BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032054
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LCH5|MD22B_ARATH Mediator of RNA polymerase II transcription subunit 22b
OS=Arabidopsis thaliana GN=MED22B PE=1 SV=1
Length = 154
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/135 (80%), Positives = 126/135 (93%)
Query: 9 PTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASR 68
PTAAAAAAA QKQK L+QRVETDI S+VDNF+Q+VNV+RV+DPPV+NSQE++MMEMRASR
Sbjct: 17 PTAAAAAAALQKQKALLQRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYMMEMRASR 76
Query: 69 MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASL 128
MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR EF+Q+AEKT+R+LARI ++A+A+L
Sbjct: 77 MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIADDASANL 136
Query: 129 KELEAHYYSSGHRTT 143
KELE+HYYSS R T
Sbjct: 137 KELESHYYSSAQRLT 151
>sp|Q9SA42|MD22A_ARATH Mediator of RNA polymerase II transcription subunit 22a
OS=Arabidopsis thaliana GN=MED22A PE=1 SV=1
Length = 150
Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/135 (79%), Positives = 127/135 (94%)
Query: 9 PTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASR 68
PTAAAAAAA QKQK L+QRV+TDI S+VDNF+Q+VNVARV+DPP++NSQE++MMEMRASR
Sbjct: 14 PTAAAAAAALQKQKALLQRVDTDITSVVDNFNQIVNVARVSDPPMKNSQEAYMMEMRASR 73
Query: 69 MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASL 128
+VQAADSLLKLVSELKQTAIFSGFASLNDHVEQR EF+Q+AEKT+R+LARI ++A+ASL
Sbjct: 74 LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNRLLARIADDASASL 133
Query: 129 KELEAHYYSSGHRTT 143
KELE+HYYSS R+T
Sbjct: 134 KELESHYYSSAQRST 148
>sp|Q54XB0|MED22_DICDI Putative mediator of RNA polymerase II transcription subunit 22
OS=Dictyostelium discoideum GN=med22 PE=3 SV=1
Length = 149
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 4 GAGSGPTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMME 63
G S P + Q+ +++++ I +++N+ ++ +++VNDP ++N+ E + ME
Sbjct: 5 GNNSLPPQTRGEVLFRDQQFFQKQIDSKIMQLLENYHNIIKISKVNDP-LKNASEIYEME 63
Query: 64 MRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEE 123
R S M+ A + LLK++ ELKQ I + F+++ + V + F+++ E+T++ + I EE
Sbjct: 64 TRTSNMLNAGEGLLKIIEELKQNLILNDFSTMAEEVRIQNLVFHKENERTNKSIKLISEE 123
Query: 124 AAASLKELEAHYYSSGHR 141
+ SLKELE YY+S ++
Sbjct: 124 LSRSLKELEDEYYNSSYK 141
>sp|A5WUL3|MED22_DANRE Mediator of RNA polymerase II transcription subunit 22 OS=Danio
rerio GN=med22 PE=2 SV=1
Length = 198
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ DI SI+DNF++++ A+V D + Q+ F M +RA+ +
Sbjct: 9 QSKETLLQNYNKRLKDDIRSILDNFTEIIKTAKVEDETQVSRATQAEQDHFEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLK 129
V+A +SL+KLVS+LKQ I + F S+N+ + R + E+ D+ L + +E A L
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAISLRNQQLRTLQEECDKKLISLRDEIAIDLY 128
Query: 130 ELEAHYYSS 138
ELE YYSS
Sbjct: 129 ELEEEYYSS 137
>sp|A0JPN6|MED22_RAT Mediator of RNA polymerase II transcription subunit 22 OS=Rattus
norvegicus GN=Med22 PE=2 SV=1
Length = 200
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 74/119 (62%), Gaps = 9/119 (7%)
Query: 16 AAAQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRA 66
A Q ++TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA
Sbjct: 6 ALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRA 65
Query: 67 SRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAA 125
+ +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L + +E +
Sbjct: 66 ANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVS 124
>sp|Q62276|MED22_MOUSE Mediator of RNA polymerase II transcription subunit 22 OS=Mus
musculus GN=Med22 PE=2 SV=2
Length = 200
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 74/119 (62%), Gaps = 9/119 (7%)
Query: 16 AAAQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRA 66
A Q ++TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA
Sbjct: 6 ALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRA 65
Query: 67 SRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAA 125
+ +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L + +E +
Sbjct: 66 ANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVS 124
>sp|Q15528|MED22_HUMAN Mediator of RNA polymerase II transcription subunit 22 OS=Homo
sapiens GN=MED22 PE=1 SV=2
Length = 200
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 73/117 (62%), Gaps = 9/117 (7%)
Query: 16 AAAQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRA 66
A Q ++TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA
Sbjct: 6 ALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRA 65
Query: 67 SRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEE 123
+ +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L + +E
Sbjct: 66 ANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDE 122
>sp|Q5E9K2|MED22_BOVIN Mediator of RNA polymerase II transcription subunit 22 OS=Bos
taurus GN=MED22 PE=2 SV=1
Length = 201
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 74/119 (62%), Gaps = 9/119 (7%)
Query: 16 AAAQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRA 66
A Q ++TL+Q R++ D+ SI+DNF++++ A++ D + Q+++ M +RA
Sbjct: 6 ALPQSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRA 65
Query: 67 SRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAA 125
+ +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L + +E +
Sbjct: 66 ANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDEVS 124
>sp|Q800L3|MED22_CHICK Mediator of RNA polymerase II transcription subunit 22 OS=Gallus
gallus GN=MED22 PE=3 SV=1
Length = 203
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 73/117 (62%), Gaps = 9/117 (7%)
Query: 18 AQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASR 68
Q ++TL+Q R++ D+ SI+DNF++++ A++ D ++ Q+++ M +RA+
Sbjct: 8 PQSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQSEQDNYEMHVRAAN 67
Query: 69 MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAA 125
+V+A +SL+KLVS+LKQ I + F S+N+ + QR + E+ D+ L + +E +
Sbjct: 68 IVRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEECDKKLIALRDEIS 124
>sp|O57595|MED22_TAKRU Mediator of RNA polymerase II transcription subunit 22 OS=Takifugu
rubripes GN=med22 PE=3 SV=2
Length = 200
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 9/123 (7%)
Query: 12 AAAAAAAQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDP-----PVRNSQESFMM 62
A Q ++TL+Q R++ DI SI++NF++++ A++ D P + Q+ + M
Sbjct: 2 ATQRVLPQSKETLLQSYNKRLKDDIKSILENFTEIIKTAKIEDETQVSRPAQAEQDHYEM 61
Query: 63 EMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGE 122
+RA+ +V+A +SL+KLVS+LKQ I + F S+ND + + + E+ D+ L + +
Sbjct: 62 HVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNDAISLQNQQLRSLQEECDKKLISLRD 121
Query: 123 EAA 125
E A
Sbjct: 122 EIA 124
>sp|Q9V439|MED22_DROME Mediator of RNA polymerase II transcription subunit 22
OS=Drosophila melanogaster GN=MED22 PE=1 SV=1
Length = 143
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 70/117 (59%), Gaps = 5/117 (4%)
Query: 27 RVETDIASIVDNFSQLVNVARVND-----PPVRNSQESFMMEMRASRMVQAADSLLKLVS 81
R++ D+ S+++NF +++ +AR + Q++ M++RA+ MV+A +SL+KLV+
Sbjct: 24 RLKDDVRSMLENFEEILKLARRESHSQISKTTQCEQDALEMQVRAANMVRAGESLMKLVA 83
Query: 82 ELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSS 138
+LKQ I + F S+N+ + + F + D+ L ++ +E A L +LE YY+S
Sbjct: 84 DLKQYLILNDFHSVNEAITNNSQLFRNTQSECDKKLMKLRDEMAMDLYDLEEEYYTS 140
>sp|Q6GQ95|MED22_XENLA Mediator of RNA polymerase II transcription subunit 22 OS=Xenopus
laevis GN=med22 PE=2 SV=1
Length = 201
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 18 AQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDP-----PVRNSQESFMMEMRASR 68
Q ++TL+Q R++ DI SI+DNF++++ A++ + + Q+++ M +R++
Sbjct: 8 PQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEEEHQVSRSTQGEQDNYEMHVRSAN 67
Query: 69 MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAA 125
+V+A +SL+KLVS+LKQ I + F S+N+ + QR + E+ D+ L + ++ A
Sbjct: 68 IVRAGESLMKLVSDLKQFLILNDFPSVNESINQRNQQLRTLREECDKKLIALRDDIA 124
>sp|Q178E6|MED22_AEDAE Mediator of RNA polymerase II transcription subunit 22 OS=Aedes
aegypti GN=MED22 PE=3 SV=1
Length = 138
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 72/120 (60%), Gaps = 5/120 (4%)
Query: 27 RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLKLVS 81
R++ D+ S++DNF ++V +A+ + + Q+++ M++RAS +V+A +SL+KLVS
Sbjct: 19 RLKEDVRSMLDNFEEIVRLAKGENETQFSKMTQCEQDTYEMQVRASNIVRAGESLMKLVS 78
Query: 82 ELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSSGHR 141
++KQ I + F S+N+ + + + D L + ++ AA L +LE YY+S ++
Sbjct: 79 DIKQYLILNDFHSVNEAICSSSQLYRSTQMDRDNKLMAVRDDMAADLYDLEEEYYTSMYK 138
>sp|Q7QB45|MED22_ANOGA Mediator of RNA polymerase II transcription subunit 22 OS=Anopheles
gambiae GN=MED22 PE=3 SV=3
Length = 138
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 74/125 (59%), Gaps = 5/125 (4%)
Query: 22 KTLMQRVETDIASIVDNFSQLVNVAR-VNDPPV----RNSQESFMMEMRASRMVQAADSL 76
K+ R++ DI S+ +NF +++ +A+ ND + + Q+++ ++RA+ +V+A +SL
Sbjct: 14 KSYNSRLKEDIRSMRENFEEIIRLAKGENDTQLSKITQCEQDTYETQVRAANIVRAGESL 73
Query: 77 LKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYY 136
+KLVS++KQ I + F S+N+ + + + D L + ++ AA L +LE YY
Sbjct: 74 MKLVSDIKQYLILNDFHSVNEAICSNSTLYRTTQIDRDNKLMAVRDDMAADLYDLEEEYY 133
Query: 137 SSGHR 141
+S ++
Sbjct: 134 TSIYK 138
>sp|Q23679|MED22_CAEEL Mediator of RNA polymerase II transcription subunit 22
OS=Caenorhabditis elegans GN=mdt-22 PE=3 SV=1
Length = 157
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 4 GAGSGPTAAAAAAAAQKQKTLM----QRVETDIASIVDNFSQLVNVARVN-DPPVRNSQE 58
G G + +++ +K ++ +R+ +I S+ DNF ++ A+VN D +Q
Sbjct: 3 GVAGGASKKSSSRTMATKKLIIDEFKRRLRDNIKSLNDNFFHIIQAAKVNPDDNAYKNQT 62
Query: 59 SFMME---------MRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ 101
M E +RA MV+A+D LLKL ++LK+ I F L +++Q
Sbjct: 63 GKMTEFYTTKNEMAVRAQLMVRASDELLKLTADLKEFLILHDFHFLTHNIKQ 114
>sp|Q626S1|MED22_CAEBR Mediator of RNA polymerase II transcription subunit 22
OS=Caenorhabditis briggsae GN=mdt-22 PE=3 SV=1
Length = 153
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 5 AGSGPTAAAAAAAAQKQKTL---MQRVETDIASIVDNFSQLVNVARVN-DPPVRNSQESF 60
+G+ AA+ + A K+ + +R+ +I S+ DNF ++ A+VN D +Q
Sbjct: 2 SGNAQKKAASRSMATKKLIIDEFKRRLRDNIKSLNDNFYHIIQAAKVNPDDNAFKNQTGK 61
Query: 61 M---------MEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ 101
M M +RA MV+A+D LL+L ++LK+ I F L +++Q
Sbjct: 62 MTEFYTIKNEMAVRAQLMVRASDELLRLTTDLKEFLILHDFHFLTHNIKQ 111
>sp|P52785|GUC2E_MOUSE Guanylyl cyclase GC-E OS=Mus musculus GN=Gucy2e PE=2 SV=2
Length = 1108
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 41 QLVNVARVNDPPVRNSQE---SFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLND 97
QL+ P +R S + + R DS+L+++ + ++L D
Sbjct: 785 QLMTQCWAEHPELRPSMDLTFDLFKSINKGRKTNIIDSMLRMLEQYS--------SNLED 836
Query: 98 HVEQRTNEFNQQAEKTDRMLARI 120
+ +RT E Q+ +KTDR+L ++
Sbjct: 837 LIRERTEELEQEKQKTDRLLTQM 859
>sp|P51840|GUC2E_RAT Guanylyl cyclase GC-E OS=Rattus norvegicus GN=Gucy2e PE=1 SV=1
Length = 1108
Score = 33.1 bits (74), Expect = 0.61, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 41 QLVNVARVNDPPVRNSQE---SFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLND 97
QL+ P +R S + + R DS+L+++ + ++L D
Sbjct: 785 QLMAQCWAEHPELRPSMDLTFDLFKGINKGRKTNIIDSMLRMLEQYS--------SNLED 836
Query: 98 HVEQRTNEFNQQAEKTDRMLARI 120
+ +RT E Q+ +KTDR+L ++
Sbjct: 837 LIRERTEELEQEKQKTDRLLTQM 859
>sp|Q12647|GUNB_NEOPA Endoglucanase B OS=Neocallimastix patriciarum GN=CELB PE=2 SV=1
Length = 473
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 74 DSLLKLVSELKQTAIFSG-FASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELE 132
D +K V E+ AI +G +A LN H E + F + E ++L I ++ AA + +
Sbjct: 104 DQWMKRVHEIVDYAINTGGYAILNIHHETWNHAFQKNLESAKKILVAIWKQIAAEFADYD 163
Query: 133 AHYYSSG 139
H G
Sbjct: 164 EHLIFEG 170
>sp|Q6C265|MED22_YARLI Mediator of RNA polymerase II transcription subunit 22
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SRB6 PE=3 SV=2
Length = 112
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 23 TLMQRVETDIASIVDNFSQLVNVARVNDPPVRN-SQESFMMEMRASRMVQAADSLLKLVS 81
TL+QRV+ + F+ +VN A+V+ + E++++E S MV++ + LL +
Sbjct: 7 TLLQRVDNATEQLNSKFTDIVNSAKVSSKDKSALAMETYLVEESTSAMVRSLEDLLFVTR 66
Query: 82 ELKQTAIF 89
LK+ I
Sbjct: 67 SLKEAWIL 74
>sp|P95479|RGYR_PYRFU Reverse gyrase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638
/ JCM 8422 / Vc1) GN=rgy PE=3 SV=2
Length = 1214
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 76 LLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHY 135
L+K+ L + GF + V ++ EF ++A K + +L +I E SLK++E +
Sbjct: 484 LMKIEEALAEGLELEGFYNHVLEVFKQAVEFLREALKDEEVLKKIAENPFLSLKQIEGKW 543
Query: 136 Y 136
Y
Sbjct: 544 Y 544
>sp|O58530|RGYR_PYRHO Reverse gyrase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rgy PE=3 SV=1
Length = 1624
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 52 PVRNSQESFMMEMRASRMVQAADS--LLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQ 109
P E + R R+++ L+K+ L + GF + V +++ EF ++
Sbjct: 459 PEEKKSEGEKLYARLRRLIRNIPQYELMKIEEALAEGLELEGFHNHVLEVFKQSVEFLRE 518
Query: 110 AEKTDRMLARIGEEAAASLKELEAHYY 136
K + ++ +I E SLKE+E Y
Sbjct: 519 VLKDEEVIKKIAENPFLSLKEIEGKLY 545
>sp|Q17WM2|GATA_HELAH Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Helicobacter
acinonychis (strain Sheeba) GN=gatA PE=3 SV=1
Length = 453
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 92 FASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHY 135
A L DH++ +NE E T + L IG E K L++HY
Sbjct: 234 IAVLRDHIKDASNEVQLAYENTLKALKEIGHEIVEK-KILDSHY 276
>sp|P42545|YO10_BPL2 Uncharacterized 16.1 kDa protein OS=Acholeplasma phage L2 PE=4 SV=1
Length = 140
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 48 VNDPPVRNSQESFMMEMRASRMV-----QAADSLLKLVSELKQTAIFSGFASLNDHVEQR 102
+N+ + + +SF+M+ + R++ QAA L K +S+LKQ I + D V++
Sbjct: 70 INEAYLNITFKSFVMDKKKERIIIRTASQAAAKLDKEISDLKQNKIVKPVVTNPDWVDEV 129
Query: 103 TNEF 106
NE
Sbjct: 130 MNEL 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.120 0.310
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,008,695
Number of Sequences: 539616
Number of extensions: 1305212
Number of successful extensions: 5601
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 5556
Number of HSP's gapped (non-prelim): 80
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)