Query 032054
Match_columns 148
No_of_seqs 79 out of 81
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 14:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032054.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032054hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p90a1 c.56.8.1 (A:6-274) Hyp 53.1 13 0.00096 27.5 5.9 56 70-135 206-261 (269)
2 d2b0ha1 a.24.9.2 (A:1838-1973) 28.5 40 0.0029 22.3 4.6 26 23-48 74-99 (136)
3 d1st6a7 a.24.9.1 (A:719-855) V 26.2 59 0.0043 22.1 5.3 56 23-87 60-117 (137)
4 d1xzpa1 a.24.25.1 (A:118-211,A 22.0 81 0.0059 21.3 5.4 23 111-133 30-52 (173)
5 d1jmsa1 a.60.6.1 (A:148-242) T 21.1 30 0.0022 22.1 2.6 64 34-108 20-83 (95)
6 d2fmpa1 a.60.6.1 (A:10-91) DNA 20.8 28 0.002 21.6 2.4 67 29-108 3-69 (82)
7 d2ayua1 d.305.1.1 (A:70-370) N 20.8 88 0.0064 23.8 5.8 41 93-137 17-57 (301)
8 d1yzma1 a.2.19.1 (A:456-501) F 20.3 32 0.0024 20.2 2.4 16 122-137 28-43 (46)
9 d1booa_ c.66.1.11 (A:) m.PvuII 19.2 18 0.0013 25.8 1.1 12 5-16 259-270 (320)
10 d2qy9a1 a.24.13.1 (A:201-284) 18.9 46 0.0034 20.4 3.1 53 79-131 27-82 (84)
No 1
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=53.09 E-value=13 Score=27.54 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=32.6
Q ss_pred HHhHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032054 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHY 135 (148)
Q Consensus 70 VrAaEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~del~~~L~eLEeeY 135 (148)
-+|+-.||+.++++=-.= =|...|.+....-..++++..+ =.+|+...+..||++|
T Consensus 206 P~AA~~lL~~l~~~~gl~--id~~~L~e~Ae~~e~~i~~l~e--------~~~e~~~~v~~LE~~y 261 (269)
T d2p90a1 206 PAATLKLLQSIADSADLN--LPLLALERDAEKVHRQLMEQTE--------ESSEIQRVVGALEQQY 261 (269)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCHHHHHHHHHHHHHHHHHHH--------HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--CChHHHHHHHHHHHHHHHHHHh--------hCHHHHHHHHHHHHhH
Confidence 467777777777652211 1555555544443333332222 2367888899999988
No 2
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.47 E-value=40 Score=22.34 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcc
Q 032054 23 TLMQRVETDIASIVDNFSQLVNVARV 48 (148)
Q Consensus 23 sl~~Rl~~dI~slldnF~~Iik~Akv 48 (148)
....+|.+.++.+.+...+||..||.
T Consensus 74 ~~q~~ll~~ak~v~~s~~~Lv~aak~ 99 (136)
T d2b0ha1 74 EIGAHIKHRVQELGHGCSALVTKAGA 99 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555553
No 3
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.20 E-value=59 Score=22.13 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCC--CCccchHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 032054 23 TLMQRVETDIASIVDNFSQLVNVARVND--PPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTA 87 (148)
Q Consensus 23 sl~~Rl~~dI~slldnF~~Iik~Akv~d--~~~~~~~e~fem~vrAa~mVrAaEsLLkLvseLKq~l 87 (148)
.|.+||...+++|-+.-..++..||.=- +.-...++ .++.|++.|+.=|++++..+
T Consensus 60 ~y~~~V~~Avk~La~~~~~~v~~ak~va~np~d~~~q~---------~~~daa~~l~~aV~~Vr~Al 117 (137)
T d1st6a7 60 KFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQK---------SFLDSGYRILGAVAKVREAF 117 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCTTTTTHH---------HHTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCCHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999998888643 22233333 34788999999999999876
No 4
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.04 E-value=81 Score=21.27 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032054 111 EKTDRMLARIGEEAAASLKELEA 133 (148)
Q Consensus 111 e~~d~~L~~l~del~~~L~eLEe 133 (148)
-...+.+..||+++-..+..+|-
T Consensus 30 G~ls~~i~~ir~~L~~l~a~iEa 52 (173)
T d1xzpa1 30 GGLRDFVDSLRRELIEVLAEIRV 52 (173)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555553
No 5
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.09 E-value=30 Score=22.10 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=46.0
Q ss_pred HHHHhHHHHHHhhccCCCCccchHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHH
Q 032054 34 SIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQ 108 (148)
Q Consensus 34 slldnF~~Iik~Akv~d~~~~~~~e~fem~vrAa~mVrAaEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~ 108 (148)
.+++.|..|-+..++..++ -|+-.--||+++|-++-.+++...=|.+.|.+...+.....++-+
T Consensus 20 ~i~~~L~~la~~~e~~g~~-----------fr~~AY~rAa~~i~~l~~~i~~~~~l~~i~GIGk~i~~kI~Eil~ 83 (95)
T d1jmsa1 20 LFTDALDILAENDELRENE-----------GSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIE 83 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHhCCcccCCHHHHHhccchhHHHHHHHHHHHH
Confidence 3667777777777665422 345556788999888876666555578889999999888887764
No 6
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.82 E-value=28 Score=21.64 Aligned_cols=67 Identities=12% Similarity=0.215 Sum_probs=43.3
Q ss_pred HHHHHHHHHhHHHHHHhhccCCCCccchHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHH
Q 032054 29 ETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQ 108 (148)
Q Consensus 29 ~~dI~slldnF~~Iik~Akv~d~~~~~~~e~fem~vrAa~mVrAaEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~ 108 (148)
+.+|..+++.+.++.+.. +.. .-|+..--||+.+|-+|-.++...-=|.+.|.+...+.....++-.
T Consensus 3 N~~i~~~L~ela~l~~~~--~~~-----------~fr~~AY~~Aa~~i~~l~~~i~~~~~l~~i~GIGk~ia~kI~E~~~ 69 (82)
T d2fmpa1 3 NGGITDMLTELANFEKNV--SQA-----------IHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLA 69 (82)
T ss_dssp THHHHHHHHHHHHHHHHT--TCC-----------HHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh--CcC-----------hHHHHHHHHHHHHHHhCCcccCCHHHHhcCCCccHHHHHHHHHHHH
Confidence 456777777777776633 211 2345556788888888765443333357888888888887777653
No 7
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.82 E-value=88 Score=23.76 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032054 93 ASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYS 137 (148)
Q Consensus 93 ~slne~i~~~~~~l~~~~e~~d~~L~~l~del~~~L~eLEeeYYs 137 (148)
.+|-..|.++...|+..+.++ ..|..+....+++||-.|..
T Consensus 17 ~~Lp~~v~~rv~aLk~lq~e~----~~le~~f~~e~~~LE~ky~~ 57 (301)
T d2ayua1 17 GGLPKNVKEKLLSLKTLQSEL----FEVEKEFQVEMFELENKFLQ 57 (301)
T ss_dssp HHSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 788899999999998666544 55677778888888888863
No 8
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.33 E-value=32 Score=20.16 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 032054 122 EEAAASLKELEAHYYS 137 (148)
Q Consensus 122 del~~~L~eLEeeYYs 137 (148)
+-+...|+||+++||.
T Consensus 28 ~~Le~NLreLq~e~~~ 43 (46)
T d1yzma1 28 RTLQENLRQLQDEYDQ 43 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4567889999999984
No 9
>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}
Probab=19.18 E-value=18 Score=25.78 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=9.4
Q ss_pred CCCCchHHHHHH
Q 032054 5 AGSGPTAAAAAA 16 (148)
Q Consensus 5 ~~~~~~~~~~~~ 16 (148)
+|||.|++||-.
T Consensus 259 ~GSGTT~~AA~~ 270 (320)
T d1booa_ 259 GGSNTTGLVAER 270 (320)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 479999988754
No 10
>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]}
Probab=18.95 E-value=46 Score=20.37 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCc-hhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 032054 79 LVSELKQTAIFSGF-ASLNDHVEQRTNEFNQQA--EKTDRMLARIGEEAAASLKEL 131 (148)
Q Consensus 79 LvseLKq~liL~Df-~slne~i~~~~~~l~~~~--e~~d~~L~~l~del~~~L~eL 131 (148)
...+|-+.||.+|+ +...+.|-...+.-.... ...+.....++++|...|...
T Consensus 27 ~leeLEe~LI~aDvG~~tt~~ii~~lk~~~~~~~~~~~~~l~~~L~~~i~~iL~~~ 82 (84)
T d2qy9a1 27 LFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKV 82 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCBGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhchh
Confidence 45688888999999 555555554444322111 234455666777777766543
Done!