Query 032055
Match_columns 148
No_of_seqs 147 out of 1101
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:59:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.8E-57 3.9E-62 317.4 15.4 148 1-148 1-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 7.7E-56 1.7E-60 315.2 17.1 146 2-147 6-152 (153)
3 PLN00172 ubiquitin conjugating 100.0 4.8E-53 1.1E-57 302.0 18.4 147 1-147 1-147 (147)
4 PTZ00390 ubiquitin-conjugating 100.0 1E-52 2.3E-57 301.6 18.5 147 2-148 3-149 (152)
5 KOG0419 Ubiquitin-protein liga 100.0 7.3E-53 1.6E-57 287.1 14.9 145 2-146 5-149 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 3.6E-48 7.8E-53 271.2 15.8 144 2-145 6-163 (171)
7 KOG0418 Ubiquitin-protein liga 100.0 8.4E-47 1.8E-51 271.5 14.5 147 2-148 4-154 (200)
8 KOG0426 Ubiquitin-protein liga 100.0 3.5E-46 7.5E-51 254.7 14.1 145 1-145 4-162 (165)
9 KOG0424 Ubiquitin-protein liga 100.0 4.7E-46 1E-50 257.2 14.8 147 2-148 5-158 (158)
10 PF00179 UQ_con: Ubiquitin-con 100.0 8.8E-46 1.9E-50 262.6 14.5 138 5-142 1-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 1.8E-45 3.8E-50 261.4 15.9 139 4-142 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.2E-44 2.6E-49 258.2 17.2 143 4-146 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 3.2E-44 6.9E-49 248.2 12.1 142 3-145 31-172 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 2.2E-41 4.8E-46 232.9 14.0 146 1-147 2-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 7.3E-40 1.6E-44 232.2 12.0 144 2-148 4-149 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 6.7E-38 1.5E-42 222.6 12.1 143 2-147 29-175 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 1.4E-37 3.1E-42 221.2 8.0 146 3-148 12-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 6.8E-33 1.5E-37 189.2 11.5 118 1-119 15-134 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 8.3E-30 1.8E-34 187.2 14.7 115 2-118 6-125 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 2E-25 4.2E-30 164.7 13.8 140 5-145 23-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 2E-23 4.4E-28 156.4 9.8 107 2-111 12-121 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 2.5E-18 5.4E-23 149.7 7.3 109 4-112 854-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 7E-16 1.5E-20 134.6 10.6 111 3-113 284-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 2.3E-14 4.9E-19 98.8 8.1 109 4-112 8-123 (138)
25 KOG0897 Predicted ubiquitin-co 98.9 8.8E-09 1.9E-13 69.3 6.3 93 49-142 12-110 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.8 1.9E-08 4.2E-13 70.7 7.5 67 46-112 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.5 2.2E-07 4.7E-12 64.4 6.0 78 30-112 32-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.5 1.8E-07 4E-12 65.4 3.7 95 3-103 26-135 (161)
29 KOG2391 Vacuolar sorting prote 97.9 8.3E-05 1.8E-09 59.2 9.1 77 37-114 55-139 (365)
30 KOG3357 Uncharacterized conser 97.8 3.3E-05 7.2E-10 53.5 4.6 94 3-102 29-137 (167)
31 PF05773 RWD: RWD domain; Int 97.0 0.0034 7.3E-08 41.8 6.2 69 4-73 4-74 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.9 0.015 3.3E-07 40.2 9.3 89 20-111 13-120 (122)
33 smart00591 RWD domain in RING 96.8 0.019 4E-07 37.9 8.6 27 46-72 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.6 0.15 3.2E-06 37.1 8.5 62 51-112 56-126 (162)
35 PF09765 WD-3: WD-repeat regio 93.7 0.15 3.4E-06 40.3 5.2 85 4-111 102-187 (291)
36 KOG0309 Conserved WD40 repeat- 88.4 2.4 5.2E-05 37.9 7.4 66 6-72 425-491 (1081)
37 KOG4018 Uncharacterized conser 87.1 1.6 3.4E-05 33.0 4.9 60 7-69 8-70 (215)
38 PF14460 Prok-E2_D: Prokaryoti 76.1 4.2 9E-05 29.7 3.6 38 71-111 90-130 (175)
39 PF06113 BRE: Brain and reprod 72.4 13 0.00028 30.1 5.8 66 30-107 53-121 (333)
40 TIGR03737 PRTRC_B PRTRC system 63.8 11 0.00024 28.9 3.7 38 71-112 131-172 (228)
41 smart00340 HALZ homeobox assoc 58.1 8.8 0.00019 21.4 1.7 14 3-16 21-34 (44)
42 cd00421 intradiol_dioxygenase 53.9 22 0.00047 25.0 3.7 25 46-70 64-89 (146)
43 PF06113 BRE: Brain and reprod 53.6 33 0.00072 27.8 5.0 28 47-75 305-332 (333)
44 KOG0177 20S proteasome, regula 51.8 8.5 0.00018 28.7 1.3 32 81-112 135-166 (200)
45 cd03457 intradiol_dioxygenase_ 50.7 26 0.00055 26.0 3.7 25 46-70 85-109 (188)
46 KOG0662 Cyclin-dependent kinas 47.5 20 0.00044 27.1 2.7 55 62-116 167-225 (292)
47 cd07981 TAF12 TATA Binding Pro 44.1 73 0.0016 19.5 4.5 43 105-147 6-48 (72)
48 KOG0744 AAA+-type ATPase [Post 44.0 30 0.00064 28.5 3.3 69 27-114 170-249 (423)
49 cd03459 3,4-PCD Protocatechuat 42.1 43 0.00093 24.1 3.7 25 46-70 71-100 (158)
50 cd05845 Ig2_L1-CAM_like Second 40.5 73 0.0016 20.8 4.3 26 45-72 16-41 (95)
51 PF03366 YEATS: YEATS family; 38.9 1E+02 0.0022 19.6 4.7 41 31-73 2-42 (84)
52 PF03847 TFIID_20kDa: Transcri 38.4 92 0.002 19.1 4.3 43 105-147 4-46 (68)
53 PF14135 DUF4302: Domain of un 36.9 1.2E+02 0.0026 23.1 5.6 48 2-60 10-57 (235)
54 KOG3285 Spindle assembly check 36.8 63 0.0014 24.0 3.8 41 2-42 120-160 (203)
55 PF11333 DUF3135: Protein of u 35.6 80 0.0017 20.2 3.8 24 122-145 8-31 (83)
56 KOG4445 Uncharacterized conser 34.8 50 0.0011 26.6 3.2 25 48-72 45-69 (368)
57 PF13950 Epimerase_Csub: UDP-g 34.3 46 0.00099 19.9 2.4 19 92-110 37-55 (62)
58 COG0544 Tig FKBP-type peptidyl 33.8 1E+02 0.0023 26.0 5.2 13 50-62 211-223 (441)
59 PF09280 XPC-binding: XPC-bind 32.8 70 0.0015 19.0 3.0 22 118-139 33-54 (59)
60 KOG1047 Bifunctional leukotrie 32.2 46 0.00099 29.0 2.8 30 42-72 247-279 (613)
61 PF09606 Med15: ARC105 or Med1 31.0 16 0.00035 33.1 0.0 25 48-72 714-738 (799)
62 TIGR02423 protocat_alph protoc 30.7 76 0.0017 23.6 3.5 25 46-70 95-124 (193)
63 PF12018 DUF3508: Domain of un 30.6 74 0.0016 25.0 3.7 31 116-146 236-266 (281)
64 PF00845 Gemini_BL1: Geminivir 30.3 1.3E+02 0.0029 23.5 4.8 46 28-74 100-154 (276)
65 PRK15486 hpaC 4-hydroxyphenyla 29.9 2.2E+02 0.0047 20.6 6.2 69 6-91 6-77 (170)
66 PRK11700 hypothetical protein; 29.4 2.4E+02 0.0052 21.0 7.2 71 29-105 87-184 (187)
67 KOG2851 Eukaryotic-type DNA pr 28.4 1.3E+02 0.0028 24.9 4.6 30 80-109 335-369 (412)
68 cd03463 3,4-PCD_alpha Protocat 27.7 94 0.002 23.0 3.6 24 47-70 92-120 (185)
69 PF12065 DUF3545: Protein of u 27.5 45 0.00097 20.0 1.5 13 4-16 37-49 (59)
70 cd01145 TroA_c Periplasmic bin 26.1 74 0.0016 23.4 2.8 47 93-145 111-157 (203)
71 cd01019 ZnuA Zinc binding prot 25.1 1E+02 0.0023 24.0 3.6 48 92-145 123-170 (286)
72 KOG0700 Protein phosphatase 2C 24.3 1.7E+02 0.0036 24.5 4.7 100 6-112 250-359 (390)
73 PF00779 BTK: BTK motif; Inte 24.1 30 0.00064 18.1 0.2 15 73-87 2-17 (32)
74 PF01175 Urocanase: Urocanase; 23.8 1.3E+02 0.0028 26.1 4.1 26 121-146 272-297 (546)
75 COG3866 PelB Pectate lyase [Ca 23.4 1.5E+02 0.0033 24.0 4.1 39 31-70 197-239 (345)
76 KOG4274 Positive cofactor 2 (P 23.0 1.5E+02 0.0033 26.1 4.3 81 6-117 624-708 (742)
77 PF04881 Adeno_GP19K: Adenovir 23.0 93 0.002 21.8 2.6 19 27-45 44-62 (139)
78 PF11745 DUF3304: Protein of u 22.4 39 0.00085 22.9 0.6 20 80-99 49-68 (118)
79 PRK05414 urocanate hydratase; 22.3 1.4E+02 0.003 25.9 3.9 26 121-146 282-307 (556)
80 TIGR01228 hutU urocanate hydra 21.9 1.4E+02 0.0031 25.8 3.9 26 121-146 273-298 (545)
81 PF02563 Poly_export: Polysacc 21.8 1.6E+02 0.0034 18.3 3.4 36 77-112 34-69 (82)
82 KOG4064 Cysteine dioxygenase C 20.7 2E+02 0.0044 20.9 4.0 49 93-145 7-60 (196)
83 PF04314 DUF461: Protein of un 20.6 1.3E+02 0.0029 19.8 3.0 27 32-58 77-103 (110)
84 COG2819 Predicted hydrolase of 20.5 1.6E+02 0.0035 23.1 3.8 31 42-72 15-47 (264)
85 PF02970 TBCA: Tubulin binding 20.3 81 0.0018 20.3 1.8 14 2-15 8-21 (90)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-57 Score=317.41 Aligned_cols=148 Identities=78% Similarity=1.414 Sum_probs=145.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeC
Q 032055 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~ 80 (148)
+|.+||++|+++|++.+++|+++.++++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||++
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCccccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 032055 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||+|+|.+.|+|+.+|..||.+|+++|.+||+++|++.++|++|+.|+++|+++||+|+++|||+
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-56 Score=315.23 Aligned_cols=146 Identities=60% Similarity=1.168 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCC-CCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeC
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~ 80 (148)
|.+||++|+++|+++++.++++.++++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++|||||||+
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 678999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCccccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 032055 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|+||+|+|.+.|+|++++.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||++++++|.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 3
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.8e-53 Score=301.98 Aligned_cols=147 Identities=74% Similarity=1.326 Sum_probs=144.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeC
Q 032055 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~ 80 (148)
||.+||++|+++|+++++.++.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||++
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCccccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 032055 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|.+|+++|.++|++|+++||.
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1e-52 Score=301.60 Aligned_cols=147 Identities=48% Similarity=0.896 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCC
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~ 81 (148)
+.|||++|+++|+++++.|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+++
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCccccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 032055 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 148 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|.||+++|.+.|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++||++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-53 Score=287.14 Aligned_cols=145 Identities=43% Similarity=0.905 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCC
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~ 81 (148)
|-|||++|+++|+++++.|++..|.++|++.|.+.|.||.+|||+||+|++.|+|+++||.+||.|+|++..||||||.+
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCccccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhc
Q 032055 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 146 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
|.+|+|+|...|+|++++..||.+||+||.+||+++|+|.|||++|.+|+.+|.+++++.+.|..
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999988753
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-48 Score=271.22 Aligned_cols=144 Identities=39% Similarity=0.845 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCC-CCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeC
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~ 80 (148)
|..-|+++|++|++++.+|+.+..+++ |+++|.|.|.||++|.|+||.|+..+.||.+||.+||++||.|++||||||+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 346789999999999999999988875 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCcc-------------ccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHh
Q 032055 81 NGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKY 145 (148)
Q Consensus 81 ~G~icl~~l~-------------~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
+|.+|++||. +.|+|..|+++||++|.+||.+||.++|+|.+||+.|++|+++|+++++.+|++.
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999999995 4699999999999999999999999999999999999999999999999999864
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-47 Score=271.53 Aligned_cols=147 Identities=46% Similarity=0.832 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHhhcCC---CCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCcee
Q 032055 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNI 78 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~---~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv 78 (148)
|.+||++|++++.+++ ..|+.++.+++|+.+..+.|.||++||||||.|.+.|++|++||++||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999997 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred eC-CCceeecCccccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 032055 79 NS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 148 (148)
Q Consensus 79 ~~-~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
.+ +|.||+|++.+.|.+++|+..+|.+||++|..|++.+|.+.+.|+.|.+|++.|.+.||.|+..||++
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 96 99999999999999999999999999999999999999999999999999999999999999999985
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-46 Score=254.71 Aligned_cols=145 Identities=39% Similarity=0.850 Sum_probs=139.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecC-CCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceee
Q 032055 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~-~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~ 79 (148)
+|+|||++||++|..++++|+.+.|.+ +|++.|.+.|.||++|+|+||+|..+++||.+||.+||+++|...+|||||+
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 489999999999999999999999886 7899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCcc-------------ccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHh
Q 032055 80 SNGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKY 145 (148)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
.+|+||+++|. +.|+|.++++.||.++.+||.+||.++.+|.+|+.++++|+++|.+.|+..++|.
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKT 162 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999994 4699999999999999999999999999999999999999999999999998875
No 9
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-46 Score=257.17 Aligned_cols=147 Identities=39% Similarity=0.789 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecC-----CCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCc
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHP 76 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~-----~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hp 76 (148)
++.||+.|-+.+.++.+-|+++.|.. .|++.|+|.|.|+++|+||||.|.+++.||++||.+||+++|.+++|||
T Consensus 5 ~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HP 84 (158)
T KOG0424|consen 5 ALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHP 84 (158)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCC
Confidence 67899999999999999999999886 4799999999999999999999999999999999999999999999999
Q ss_pred eeeCCCceeecCcccc--CCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 032055 77 NINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 148 (148)
Q Consensus 77 nv~~~G~icl~~l~~~--W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|||++|.|||++|.+. |+|+.||.+||..||+||.+||+.+|+|.||...|.+|+.+|.++||.++++||.+
T Consensus 85 NVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 85 NVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 9999999999999755 99999999999999999999999999999999999999999999999999999864
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=8.8e-46 Score=262.58 Aligned_cols=138 Identities=57% Similarity=1.133 Sum_probs=129.1
Q ss_pred HHHHHHHHhhcCCCCCeeEeecCC-CCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCCCc
Q 032055 5 RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G~ 83 (148)
||++|+++++++++.|+.+.+.++ |+.+|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCccc-cCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHH
Q 032055 84 ICLDILKE-QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWT 142 (148)
Q Consensus 84 icl~~l~~-~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 142 (148)
||+++|.. .|+|++++.+||.+|+++|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999984 599999999999999999999999999999999999999999999999984
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.8e-45 Score=261.38 Aligned_cols=139 Identities=58% Similarity=1.136 Sum_probs=136.0
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCCCc
Q 032055 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G~ 83 (148)
|||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcccc-CCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHH
Q 032055 84 ICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWT 142 (148)
Q Consensus 84 icl~~l~~~-W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 142 (148)
||++++... |+|++++.+||.+|+++|.+|+.++++|.+||++|++|+++|+++|++|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999876 99999999999999999999999999999999999999999999999974
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.2e-44 Score=258.21 Aligned_cols=143 Identities=60% Similarity=1.160 Sum_probs=139.2
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCC-CCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCCC
Q 032055 4 KRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G 82 (148)
+||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988875 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCcc-ccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhc
Q 032055 83 SICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 146 (148)
Q Consensus 83 ~icl~~l~-~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.||++++. ++|+|++++.+||.+|+++|.+|+.++++|.+|+++|.+|+++|+++|++++++++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999985
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-44 Score=248.21 Aligned_cols=142 Identities=39% Similarity=0.768 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCCC
Q 032055 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G 82 (148)
.|||++|+..|+-...+|+++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.||||||..|
T Consensus 31 ~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~G 110 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSG 110 (175)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCccccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHh
Q 032055 83 SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKY 145 (148)
Q Consensus 83 ~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
.||+|||.++|+..++++.||.+||++|-+||..+|+|..||+++. |+++|++.+.++-++.
T Consensus 111 nIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 111 NICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999 9999999998876653
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=232.88 Aligned_cols=146 Identities=38% Similarity=0.801 Sum_probs=138.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCee-EeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceee
Q 032055 1 MASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~-~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~ 79 (148)
+|.+||.+|+.+|+++....+. +...++|++.|++.|. |.+.||..|.|.++|.||.+|||+||+|.|.|.|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4789999999999998766443 5566789999999998 9999999999999999999999999999999999999999
Q ss_pred CCCceeecCcc-ccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 032055 80 SNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 147 (148)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+.|++|+.++. ++|.|++.+.+||+.|..++.+|+++.|++.++|..|..|+..|.++|.+++++|+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 99999999995 899999999999999999999999999999999999999999999999999999985
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-40 Score=232.23 Aligned_cols=144 Identities=36% Similarity=0.758 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeC-
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS- 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~- 80 (148)
+.||+-.|...|... +..+...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|+++||||||++
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 458999999988875 4568888889999999999999999999999999999999999999999999999999996
Q ss_pred CCceeecCccccCCCCcCHHHHHHH-HHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 032055 81 NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~-l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||++.++..|+|.+++..|+.. |-.||..||+.+|+|.|||.+|..++++|++++|+++++||++
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999999999874 5678899999999999999999999999999999999999974
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-38 Score=222.59 Aligned_cols=143 Identities=35% Similarity=0.708 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeec--CCCCc--eEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCce
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPV--AEDMF--HWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPN 77 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~--~~n~~--~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpn 77 (148)
|+-||++|..+++- +++++.... .++.. ..+++|. |.++.|+||.|.|.+++|+.||++||+|+|+|++||||
T Consensus 29 a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 29 ALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred HHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 45677777776654 445543222 24444 5999998 99999999999999999999999999999999999999
Q ss_pred eeCCCceeecCccccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 032055 78 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 147 (148)
Q Consensus 78 v~~~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
|+.+|.||++||+++|.|+.+|.+|+.+|+.+|.+|+++||+|.|||+.+++|++.|...||.....++-
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998876653
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=221.24 Aligned_cols=146 Identities=40% Similarity=0.709 Sum_probs=142.6
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCCC
Q 032055 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G 82 (148)
+|.|.+|++.|...|++|+.|.+.++|+....+.|.||.||||++|.|...+.+..+||.+||+-.|+|+||||||-.+|
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCccccCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 032055 83 SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 148 (148)
Q Consensus 83 ~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+||.+.|..+|+|..+|.+||..|.++|..|++++++|.||+++..++.++|.++||-++.-+|++
T Consensus 92 EICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred eehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999988864
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-33 Score=189.23 Aligned_cols=118 Identities=38% Similarity=0.792 Sum_probs=109.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecc-cCceee
Q 032055 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNIN 79 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i-~Hpnv~ 79 (148)
+|.+||+||+.+++.+++.|+... +.+|+.+|.+.+.|-+||.|+|..|.++++||+.||++.|.|.|..++ .||+||
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 378999999999999999999997 779999999999999999999999999999999999999999999875 699999
Q ss_pred CCCceeecCccccCCCCcCHHHHHHHHHHhhcCC-CCCCCC
Q 032055 80 SNGSICLDILKEQWSPALTISKVLLSICSLLTDP-NPDDPL 119 (148)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p-~~~~~~ 119 (148)
+||.||+++|.+.|+|++++.+|..+|.+||++- .-..|.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 9999999999999999999999999999999863 333443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.3e-30 Score=187.19 Aligned_cols=115 Identities=35% Similarity=0.755 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCC
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~ 81 (148)
|.|||+|||+.|+++|.+++.+.|..+|+.+||.+|.||++|||+||.|+..|.||.+||++||.|+++|+ +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998 5566678
Q ss_pred CceeecCc---cccCCCCcCHHHHHHHHHHhhcC--CCCCCC
Q 032055 82 GSICLDIL---KEQWSPALTISKVLLSICSLLTD--PNPDDP 118 (148)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il~~l~~~l~~--p~~~~~ 118 (148)
-++||++- .+.|+|++++..||.+|.++|.+ |...+.
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI 125 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSI 125 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcc
Confidence 89999776 48999999999999999999975 444444
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-25 Score=164.70 Aligned_cols=140 Identities=24% Similarity=0.432 Sum_probs=128.3
Q ss_pred HHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCC--CCCeeEEeecccCceeeC-C
Q 032055 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPF--KPPKVAFRTKVFHPNINS-N 81 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~--~pP~i~f~t~i~Hpnv~~-~ 81 (148)
.|+.||..+.+.+.+|+++.|+-.|-+.|.++|++ ..+.|.||+|+|.|.+|++||. +-|+|.|.+.++||+|.+ +
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 57889999999999999999999999999999995 5567999999999999999995 689999999999999996 9
Q ss_pred CceeecCccccCCCCc-CHHHHHHHHHHhhcCCCCCCC--CcHHHHHHHhhCHHHHHHHHHHHHHHh
Q 032055 82 GSICLDILKEQWSPAL-TISKVLLSICSLLTDPNPDDP--LVPEIAHMYKTDKAKYESTARSWTQKY 145 (148)
Q Consensus 82 G~icl~~l~~~W~p~~-~i~~il~~l~~~l~~p~~~~~--~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
+.+|++-....|...- +|+++|..+|..|++|+...+ .|+||+.+|.+++++|.++|+++++..
T Consensus 102 keLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 102 KELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred cceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999988777798775 599999999999999987765 599999999999999999999998753
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-23 Score=156.35 Aligned_cols=107 Identities=37% Similarity=0.810 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCC
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~ 81 (148)
|.|||++|-++|+ +|-+.+...|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ +..+..+
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 6899999999999 777888899999999999999999999999999999999999999999999999987 5566668
Q ss_pred CceeecCcc---ccCCCCcCHHHHHHHHHHhhc
Q 032055 82 GSICLDILK---EQWSPALTISKVLLSICSLLT 111 (148)
Q Consensus 82 G~icl~~l~---~~W~p~~~i~~il~~l~~~l~ 111 (148)
-+||++|-. +.|.|+++++..|..|..+|-
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 889999884 889999999999999999885
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.5e-18 Score=149.67 Aligned_cols=109 Identities=33% Similarity=0.671 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeec--ccCceeeCC
Q 032055 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK--VFHPNINSN 81 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~--i~Hpnv~~~ 81 (148)
+..+.|++-|..+.+.|+.|...++.+.-..+.|.||.+|||..|.|.|.+.||.+||.+||.+...+. .++||.|++
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 557788899999999999999999999999999999999999999999999999999999999999876 579999999
Q ss_pred CceeecCcc-------ccCCCCcCHHHHHHHHHHhhcC
Q 032055 82 GSICLDILK-------EQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 82 G~icl~~l~-------~~W~p~~~i~~il~~l~~~l~~ 112 (148)
|+||+++|+ +.|+|+.++.++|.+||.|+-+
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 999999995 6799999999999999998864
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7e-16 Score=134.60 Aligned_cols=111 Identities=41% Similarity=0.729 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeec---ccCceee
Q 032055 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK---VFHPNIN 79 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~---i~Hpnv~ 79 (148)
.+|+++|++-+.++.++++.+.+.+..+...++.|.||.+|||++|.|.|.|.||..||..||.+.+.+. .+.||.|
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999977 5799999
Q ss_pred CCCceeecCcc-------ccCCCC-cCHHHHHHHHHHhhcCC
Q 032055 80 SNGSICLDILK-------EQWSPA-LTISKVLLSICSLLTDP 113 (148)
Q Consensus 80 ~~G~icl~~l~-------~~W~p~-~~i~~il~~l~~~l~~p 113 (148)
.+|+||+++|- +.|+|. .+|.++|.+||.++.+-
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 99999999983 679999 78999999999999754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.3e-14 Score=98.75 Aligned_cols=109 Identities=28% Similarity=0.508 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecC--CC--CceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceee
Q 032055 4 KRILKELKDLQKDPPTSCSAGPVA--ED--MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~--~n--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~ 79 (148)
-||.+|+.+-++--.++......+ +| +..|..+|.||+.|+||+-+|.+.|....+||..||+|+|.+++--.-|+
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 378888888877544444332232 23 67899999999999999999999999999999999999999999888887
Q ss_pred C-CCceeecCc--cccCCCCcCHHHHHHHHHHhhcC
Q 032055 80 S-NGSICLDIL--KEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 80 ~-~G~icl~~l--~~~W~p~~~i~~il~~l~~~l~~ 112 (148)
. +|.|.-..+ -.+|.-.+++..+|..++.++..
T Consensus 88 ~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 88 SSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 4 778876444 37899999999999999976654
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.8e-09 Score=69.33 Aligned_cols=93 Identities=20% Similarity=0.428 Sum_probs=71.1
Q ss_pred EEEEEEEcCCCCCCCCCeeEEeeccc-CceeeCCCceeecCcc-ccCCCCcCHHHHHHHHHHhhcCC--CCCCCCcHHHH
Q 032055 49 VFLVSIHFPPDYPFKPPKVAFRTKVF-HPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDP--NPDDPLVPEIA 124 (148)
Q Consensus 49 ~f~~~i~fp~~YP~~pP~i~f~t~i~-Hpnv~~~G~icl~~l~-~~W~p~~~i~~il~~l~~~l~~p--~~~~~~n~~a~ 124 (148)
..-+.+.|+++||+.||.+|...++- -.-|-.+|.||+.++. ++|+.+++++.++.++..++... ....+++.+..
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk 91 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK 91 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh
Confidence 35677889999999999999886643 3556679999999995 88999999999999999999876 45666655543
Q ss_pred HHH--hhCHHHHHHHHHHHH
Q 032055 125 HMY--KTDKAKYESTARSWT 142 (148)
Q Consensus 125 ~~~--~~~~~~f~~~~~~~~ 142 (148)
+| ..-.+.|+..++...
T Consensus 92 -~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 92 -LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred -HhhHHHHHHHHHHHHHHHH
Confidence 43 334556666666543
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.82 E-value=1.9e-08 Score=70.65 Aligned_cols=67 Identities=33% Similarity=0.780 Sum_probs=61.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEeecc---cCceeeCCCceee---cCccccCCCCcCHHHHHHHHHHhhcC
Q 032055 46 AGGVFLVSIHFPPDYPFKPPKVAFRTKV---FHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 46 ~gg~f~~~i~fp~~YP~~pP~i~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~il~~l~~~l~~ 112 (148)
.|+.+.+.|.||+.||..||.|....+. +-|||+.+|.+|+ +..-+.|.|.-.+.++|.+++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999987554 6799999999999 77789999999999999999999984
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.55 E-value=2.2e-07 Score=64.35 Aligned_cols=78 Identities=24% Similarity=0.593 Sum_probs=54.4
Q ss_pred CceEEEEEECCCCCCCCCcEE--EEEEEcCCCCCCCCCeeEEeecc-----cCceeeCCCceeecCccccCCC-CcCHHH
Q 032055 30 MFHWQATIMGPPDSPYAGGVF--LVSIHFPPDYPFKPPKVAFRTKV-----FHPNINSNGSICLDILKEQWSP-ALTISK 101 (148)
Q Consensus 30 ~~~w~~~i~gp~~t~y~gg~f--~~~i~fp~~YP~~pP~i~f~t~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~i~~ 101 (148)
+....++|. -.|.|..| .+.|-+|.+||.+||.+...... -+.+|+++|+|.+..| ++|++ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 444455554 24888887 57778999999999999875332 2449999999999888 78988 678999
Q ss_pred HHHHHHHhhcC
Q 032055 102 VLLSICSLLTD 112 (148)
Q Consensus 102 il~~l~~~l~~ 112 (148)
++..+...|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999988864
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.45 E-value=1.8e-07 Score=65.45 Aligned_cols=95 Identities=22% Similarity=0.373 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcE----------EEEEEEcCCCCCCCCCeeEEeec
Q 032055 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVSIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~i~f~t~ 72 (148)
..||..||..|.+ +++.+.++-..|.-.=.-++||-|.|.+ |.+++.+|..||..||.|..-.-
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 4799999999887 3444444445554444456777776665 66788899999999999976421
Q ss_pred -ccCceeeCCCceeecCcc-ccC---CCCcCHHHHH
Q 032055 73 -VFHPNINSNGSICLDILK-EQW---SPALTISKVL 103 (148)
Q Consensus 73 -i~Hpnv~~~G~icl~~l~-~~W---~p~~~i~~il 103 (148)
--..-.|.+|+||++... .-| .|.++|.+.+
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 124456779999998875 445 5777877765
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=8.3e-05 Score=59.15 Aligned_cols=77 Identities=22% Similarity=0.518 Sum_probs=60.1
Q ss_pred EECCCCCCCCCcEEE--EEEEcCCCCCCCCCeeEEeec-----ccCceeeCCCceeecCccccCC-CCcCHHHHHHHHHH
Q 032055 37 IMGPPDSPYAGGVFL--VSIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILKEQWS-PALTISKVLLSICS 108 (148)
Q Consensus 37 i~gp~~t~y~gg~f~--~~i~fp~~YP~~pP~i~f~t~-----i~Hpnv~~~G~icl~~l~~~W~-p~~~i~~il~~l~~ 108 (148)
+.|---++|.|.+|. +.|-+.+.||..||.+..... --|-+|+.+|.|.|..| .+|. |+.++..+++.+..
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a 133 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIA 133 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHH
Confidence 344444578888765 677799999999999866422 13899999999999999 6797 55679999999999
Q ss_pred hhcCCC
Q 032055 109 LLTDPN 114 (148)
Q Consensus 109 ~l~~p~ 114 (148)
.|.++.
T Consensus 134 ~f~~~p 139 (365)
T KOG2391|consen 134 AFSEDP 139 (365)
T ss_pred HhcCCC
Confidence 998643
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=3.3e-05 Score=53.46 Aligned_cols=94 Identities=21% Similarity=0.373 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcE----------EEEEEEcCCCCCCCCCeeEEeec
Q 032055 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVSIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~i~f~t~ 72 (148)
.+||..||+.|.. +++...++-..|.-.-..++||-|-|.+ |.+++.+|-.||..+|.|..-.-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 4799999999877 3444455556665555668999998877 66777789999999999865311
Q ss_pred -ccCceeeCCCceeecCc-cccCC---CCcCHHHH
Q 032055 73 -VFHPNINSNGSICLDIL-KEQWS---PALTISKV 102 (148)
Q Consensus 73 -i~Hpnv~~~G~icl~~l-~~~W~---p~~~i~~i 102 (148)
--.-..|.+|.||+.-. ..-|. |.+++.+.
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 01224557999999544 34564 55555554
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.96 E-value=0.0034 Score=41.84 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEEC--CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 032055 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV 73 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i 73 (148)
.+...|+..|+..-+..+ ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 456788888888654444 22334555667777732 2344445678999999999999999999877653
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.94 E-value=0.015 Score=40.17 Aligned_cols=89 Identities=21% Similarity=0.390 Sum_probs=60.6
Q ss_pred CeeEeecCCCCceEEEEEEC--CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCCCce--eecCc------
Q 032055 20 SCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI--CLDIL------ 89 (148)
Q Consensus 20 ~~~~~~~~~n~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G~i--cl~~l------ 89 (148)
|+..+.+.+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|-+.+..+-.... .+|.+ |-+..
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCe
Confidence 5667766666677766 666 55666999999999999999999998776654421110 12333 33221
Q ss_pred --------cccCCCCc-CHHHHHHHHHHhhc
Q 032055 90 --------KEQWSPAL-TISKVLLSICSLLT 111 (148)
Q Consensus 90 --------~~~W~p~~-~i~~il~~l~~~l~ 111 (148)
...|.|.. +|.+.|..|...|.
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 24699987 48888888887764
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.78 E-value=0.019 Score=37.89 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEeec
Q 032055 46 AGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 46 ~gg~f~~~i~fp~~YP~~pP~i~f~t~ 72 (148)
....+.+.+.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999987653
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.57 E-value=0.15 Score=37.06 Aligned_cols=62 Identities=34% Similarity=0.539 Sum_probs=49.4
Q ss_pred EEEEEcCCCCCCCCCeeEEeeccc---CceeeCC-----CceeecCcc-ccCCCCcCHHHHHHHHHHhhcC
Q 032055 51 LVSIHFPPDYPFKPPKVAFRTKVF---HPNINSN-----GSICLDILK-EQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 51 ~~~i~fp~~YP~~pP~i~f~t~i~---Hpnv~~~-----G~icl~~l~-~~W~p~~~i~~il~~l~~~l~~ 112 (148)
.+.|.|+.+||..+|.+.+..+.| +||++.. ..+|+---. ..|.++.++..+|..|...|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 356899999999999887765543 5888855 679985442 6799999999999999999864
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=93.70 E-value=0.15 Score=40.34 Aligned_cols=85 Identities=20% Similarity=0.446 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCCCc
Q 032055 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G~ 83 (148)
++|.+|+.++..+... .+ ..++++...++.+. -+.-...++|.+|.+||.++|.+...-++
T Consensus 102 s~ll~EIe~IGW~kl~--~i-~~d~~ls~i~l~~~------D~~R~H~l~l~l~~~yp~~~p~~~~~~P~---------- 162 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLV--QI-QFDDDLSTIKLKIF------DSSRQHYLELKLPSNYPFEPPSCSLDLPI---------- 162 (291)
T ss_dssp -CHHHHHHHHHCGCCE--EE-EE-CCCSEEEEEEE------TTCEEEEEEEETTTTTTTSEEEECS-TTS----------
T ss_pred HHHHHHHHHhccccce--EE-ecCCCccEEEEEEE------cCCceEEEEEEECCCCCCCCceeeCCCCc----------
Confidence 5688888888775432 22 23688999999888 23367889999999999999965322111
Q ss_pred eeecCccccCCC-CcCHHHHHHHHHHhhc
Q 032055 84 ICLDILKEQWSP-ALTISKVLLSICSLLT 111 (148)
Q Consensus 84 icl~~l~~~W~p-~~~i~~il~~l~~~l~ 111 (148)
.+...|.+ ..++.+++...+..+.
T Consensus 163 ----~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 ----PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp -----HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ----chhhhhcccccCHHHHHHHHHHHHH
Confidence 12246888 6678887776666554
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.38 E-value=2.4 Score=37.90 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=40.8
Q ss_pred HHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCC-CCeeEEeec
Q 032055 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK-PPKVAFRTK 72 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~-pP~i~f~t~ 72 (148)
|.+|+.-|-.. -..+.++-.+..-..-.+.+.||-.-.-.-...++.|.||.+||.+ +|.+.|..+
T Consensus 425 LgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 425 LGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred HHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 55555554432 2334444334445666777777654432223458999999999995 789999744
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.13 E-value=1.6 Score=33.04 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCCCe-eEeecCCCCceEEEEEECC--CCCCCCCcEEEEEEEcCCCCCCCCCeeEE
Q 032055 7 LKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGP--PDSPYAGGVFLVSIHFPPDYPFKPPKVAF 69 (148)
Q Consensus 7 ~~E~~~l~~~~~~~~-~~~~~~~n~~~w~~~i~gp--~~t~y~gg~f~~~i~fp~~YP~~pP~i~f 69 (148)
.+|+..|...-+..+ .+ .+.+...+.+.|.-- .+.-+.| .+.+.+.++++||..+|.|.+
T Consensus 8 e~E~EaLeSIY~de~~~i--~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 8 EEELEALESIYPDEFKHI--NSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred HHHHHHHHHhccchhhhh--hccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 356666666544433 22 233333356666521 1222333 789999999999999999943
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=76.07 E-value=4.2 Score=29.72 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=23.2
Q ss_pred ecccC---ceeeCCCceeecCccccCCCCcCHHHHHHHHHHhhc
Q 032055 71 TKVFH---PNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 111 (148)
Q Consensus 71 t~i~H---pnv~~~G~icl~~l~~~W~p~~~i~~il~~l~~~l~ 111 (148)
|++|| +||+.+|.||+.... .|.......+......|.
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff 130 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFF 130 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHh
Confidence 44565 499999999997642 234433444555555444
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=72.36 E-value=13 Score=30.10 Aligned_cols=66 Identities=23% Similarity=0.442 Sum_probs=45.1
Q ss_pred CceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEe-ecccCceeeCCCceeecCccccCCCCc--CHHHHHHHH
Q 032055 30 MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFR-TKVFHPNINSNGSICLDILKEQWSPAL--TISKVLLSI 106 (148)
Q Consensus 30 ~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~-t~i~Hpnv~~~G~icl~~l~~~W~p~~--~i~~il~~l 106 (148)
.....+.|. |.|...+-+|.|...||..||-+.|- ..-|+|... . +..| .+|++.- .+..++..|
T Consensus 53 ~DRF~l~IP------y~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLIP------YCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEee------ccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHH
Confidence 445666664 99999999999999999999999996 344777421 1 1222 5787764 355555444
Q ss_pred H
Q 032055 107 C 107 (148)
Q Consensus 107 ~ 107 (148)
.
T Consensus 121 ~ 121 (333)
T PF06113_consen 121 R 121 (333)
T ss_pred H
Confidence 4
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=63.84 E-value=11 Score=28.92 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=25.5
Q ss_pred ecccC---ceeeCCCceeecCccccCCCCc-CHHHHHHHHHHhhcC
Q 032055 71 TKVFH---PNINSNGSICLDILKEQWSPAL-TISKVLLSICSLLTD 112 (148)
Q Consensus 71 t~i~H---pnv~~~G~icl~~l~~~W~p~~-~i~~il~~l~~~l~~ 112 (148)
|++|| +||+++|.||+.... .|.. ++.+ +....+.|.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhC
Confidence 34566 389999999997653 4443 4555 7777776654
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=58.06 E-value=8.8 Score=21.44 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhcC
Q 032055 3 SKRILKELKDLQKD 16 (148)
Q Consensus 3 ~kRL~~E~~~l~~~ 16 (148)
-|||++|+.+|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 38999999999875
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=53.93 E-value=22 Score=25.04 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=22.4
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeeEEe
Q 032055 46 AGGVFLVSIHFPPDYP-FKPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~fp~~YP-~~pP~i~f~ 70 (148)
+.|.|.|.-.+|..|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 4588999999999999 999999885
No 43
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=53.62 E-value=33 Score=27.83 Aligned_cols=28 Identities=29% Similarity=0.655 Sum_probs=23.3
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEeecccC
Q 032055 47 GGVFLVSIHFPPDYPFKPPKVAFRTKVFH 75 (148)
Q Consensus 47 gg~f~~~i~fp~~YP~~pP~i~f~t~i~H 75 (148)
+=.|-++|.+|..||...|.++|.+- ||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS~-yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQSV-YH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEee-cc
Confidence 44588899999999999999999863 44
No 44
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.77 E-value=8.5 Score=28.66 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=26.3
Q ss_pred CCceeecCccccCCCCcCHHHHHHHHHHhhcC
Q 032055 81 NGSICLDILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~ 112 (148)
.+.+|++++.+.|+|.+|..+-+.-++.++.+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 67799999999999999988887766665543
No 45
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=50.68 E-value=26 Score=26.01 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=22.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEe
Q 032055 46 AGGVFLVSIHFPPDYPFKPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~fp~~YP~~pP~i~f~ 70 (148)
+.|.|.|.=.+|--||..+|.|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4588999999999999999999886
No 46
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=47.53 E-value=20 Score=27.08 Aligned_cols=55 Identities=29% Similarity=0.554 Sum_probs=45.1
Q ss_pred CCCCeeEEeecccCceee--CCCceeecCccccC--CCCcCHHHHHHHHHHhhcCCCCC
Q 032055 62 FKPPKVAFRTKVFHPNIN--SNGSICLDILKEQW--SPALTISKVLLSICSLLTDPNPD 116 (148)
Q Consensus 62 ~~pP~i~f~t~i~Hpnv~--~~G~icl~~l~~~W--~p~~~i~~il~~l~~~l~~p~~~ 116 (148)
..||-|-|-.+.|.-.|+ +-|.|--++...+| .|+.++.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 379999999999999998 57777667777777 58889999999999999887543
No 47
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=44.08 E-value=73 Score=19.53 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 032055 105 SICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 147 (148)
Q Consensus 105 ~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
.|+.++..-++...+.++|...+.+=-+.|...+-..+.++|+
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666656677789999999999889999888777776663
No 48
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.97 E-value=30 Score=28.48 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=44.6
Q ss_pred CCCCceEE--EEEECCCCCCCCCcE-------EEEEEEcCCCCCCCCCeeEEeecccCceeeCCCceeecCccccCCCC-
Q 032055 27 AEDMFHWQ--ATIMGPPDSPYAGGV-------FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPA- 96 (148)
Q Consensus 27 ~~n~~~w~--~~i~gp~~t~y~gg~-------f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~G~icl~~l~~~W~p~- 96 (148)
+.|+-.|+ +.++||+|| |.+ =++.|...+.|+..- +- +|..-.|..+|...
T Consensus 170 ntnlIt~NRliLlhGPPGT---GKTSLCKaLaQkLSIR~~~~y~~~~-------------li---EinshsLFSKWFsES 230 (423)
T KOG0744|consen 170 NTNLITWNRLILLHGPPGT---GKTSLCKALAQKLSIRTNDRYYKGQ-------------LI---EINSHSLFSKWFSES 230 (423)
T ss_pred CCceeeeeeEEEEeCCCCC---ChhHHHHHHHHhheeeecCccccce-------------EE---EEehhHHHHHHHhhh
Confidence 46777774 567999999 443 567777777776532 10 11111234678644
Q ss_pred -cCHHHHHHHHHHhhcCCC
Q 032055 97 -LTISKVLLSICSLLTDPN 114 (148)
Q Consensus 97 -~~i~~il~~l~~~l~~p~ 114 (148)
.-+..++..|+.|+.+++
T Consensus 231 gKlV~kmF~kI~ELv~d~~ 249 (423)
T KOG0744|consen 231 GKLVAKMFQKIQELVEDRG 249 (423)
T ss_pred hhHHHHHHHHHHHHHhCCC
Confidence 448888999999999865
No 49
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=42.06 E-value=43 Score=24.05 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.1
Q ss_pred CCcEEEEEEEcCCCCC-----CCCCeeEEe
Q 032055 46 AGGVFLVSIHFPPDYP-----FKPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~fp~~YP-----~~pP~i~f~ 70 (148)
+.|.|.|.-.+|.-|| ..||.|.|.
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 3488999999999999 799999886
No 50
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=40.52 E-value=73 Score=20.77 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=21.1
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 032055 45 YAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 45 y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 72 (148)
-+|..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46788889988899999 488888754
No 51
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=38.90 E-value=1e+02 Score=19.61 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=28.2
Q ss_pred ceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 032055 31 FHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV 73 (148)
Q Consensus 31 ~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i 73 (148)
..|.+-+.|+.+.....-+=++...+.++|+. |...+..+.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pP 42 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPP 42 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTT
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCC
Confidence 57999999988765566677888899888876 665555443
No 52
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=38.37 E-value=92 Score=19.07 Aligned_cols=43 Identities=14% Similarity=0.310 Sum_probs=30.3
Q ss_pred HHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 032055 105 SICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 147 (148)
Q Consensus 105 ~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
.|+.++..-++...+.+++..+..+=-+.|...+-..+.+.|+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777778888899999999988888898888777776653
No 53
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=36.88 E-value=1.2e+02 Score=23.05 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCC
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~Y 60 (148)
+..||.+.++++++.. .....-|.+.+. |...---|| |.+.++|.++=
T Consensus 10 ~~eR~~e~~~~~k~~L---------~~a~~GW~~~yy-p~~~~~~GG-y~f~~kF~~~~ 57 (235)
T PF14135_consen 10 PAERINEALAEYKKIL---------TSAPNGWKLEYY-PKTDQSYGG-YTFLMKFDDDG 57 (235)
T ss_pred HHHHHHHHHHHHHHHH---------hcCCCceEEEEE-CCCCccCCc-EEEEEEECCCC
Confidence 4578888888887732 233445888887 444321244 88888887553
No 54
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.76 E-value=63 Score=24.00 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCC
Q 032055 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPD 42 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~ 42 (148)
..+|+++|++++.++--..++..|.-+..-.+.+.+.--.+
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD 160 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC
Confidence 36899999999999877778887877777778887775443
No 55
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=35.64 E-value=80 Score=20.23 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=19.4
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHh
Q 032055 122 EIAHMYKTDKAKYESTARSWTQKY 145 (148)
Q Consensus 122 ~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
+...++++||++|.+..++.++..
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~ 31 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEM 31 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHH
Confidence 456788999999999888877653
No 56
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=34.80 E-value=50 Score=26.59 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.4
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEeec
Q 032055 48 GVFLVSIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 48 g~f~~~i~fp~~YP~~pP~i~f~t~ 72 (148)
-++.+++..+..||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5688999999999999999998765
No 57
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=34.33 E-value=46 Score=19.88 Aligned_cols=19 Identities=11% Similarity=0.440 Sum_probs=12.4
Q ss_pred cCCCCcCHHHHHHHHHHhh
Q 032055 92 QWSPALTISKVLLSICSLL 110 (148)
Q Consensus 92 ~W~p~~~i~~il~~l~~~l 110 (148)
+|.|.++|.+++...-...
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999998776644
No 58
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=33.85 E-value=1e+02 Score=25.97 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=11.6
Q ss_pred EEEEEEcCCCCCC
Q 032055 50 FLVSIHFPPDYPF 62 (148)
Q Consensus 50 f~~~i~fp~~YP~ 62 (148)
..+.++||++|+.
T Consensus 211 k~i~vtFP~dy~a 223 (441)
T COG0544 211 KDIKVTFPEDYHA 223 (441)
T ss_pred eEEEEEcccccch
Confidence 6688999999998
No 59
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=32.83 E-value=70 Score=19.05 Aligned_cols=22 Identities=5% Similarity=0.212 Sum_probs=19.0
Q ss_pred CCcHHHHHHHhhCHHHHHHHHH
Q 032055 118 PLVPEIAHMYKTDKAKYESTAR 139 (148)
Q Consensus 118 ~~n~~a~~~~~~~~~~f~~~~~ 139 (148)
..|++.+++..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 3789999999999999988754
No 60
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=32.21 E-value=46 Score=29.04 Aligned_cols=30 Identities=33% Similarity=0.750 Sum_probs=24.8
Q ss_pred CCCCCCcEEEEEEEcCCCCCC---CCCeeEEeec
Q 032055 42 DSPYAGGVFLVSIHFPPDYPF---KPPKVAFRTK 72 (148)
Q Consensus 42 ~t~y~gg~f~~~i~fp~~YP~---~pP~i~f~t~ 72 (148)
.+||.=|.|.+ +.+|.+||+ +-|-++|+|+
T Consensus 247 ~GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 247 FGPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred cCCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 34677788987 568999999 6799999987
No 61
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=31.05 E-value=16 Score=33.07 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=0.0
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEeec
Q 032055 48 GVFLVSIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 48 g~f~~~i~fp~~YP~~pP~i~f~t~ 72 (148)
.+=.++|.+|.+||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 4456889999999999999877544
No 62
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=30.74 E-value=76 Score=23.61 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=20.8
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeeEEe
Q 032055 46 AGGVFLVSIHFPPDYPF-----KPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~fp~~YP~-----~pP~i~f~ 70 (148)
+.|.|.|+-..|..||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34779999999999998 78877664
No 63
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=30.60 E-value=74 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=26.7
Q ss_pred CCCCcHHHHHHHhhCHHHHHHHHHHHHHHhc
Q 032055 116 DDPLVPEIAHMYKTDKAKYESTARSWTQKYA 146 (148)
Q Consensus 116 ~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
..-.+.+|+..|.++++.|...+.+.+++.+
T Consensus 236 y~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 236 YAFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EEeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 3447889999999999999999999988754
No 64
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=30.34 E-value=1.3e+02 Score=23.48 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=33.1
Q ss_pred CCCceEEEEEECCCCCCCCCc----EEEEEEEcC-----CCCCCCCCeeEEeeccc
Q 032055 28 EDMFHWQATIMGPPDSPYAGG----VFLVSIHFP-----PDYPFKPPKVAFRTKVF 74 (148)
Q Consensus 28 ~n~~~w~~~i~gp~~t~y~gg----~f~~~i~fp-----~~YP~~pP~i~f~t~i~ 74 (148)
.|..-|++.... .+|.-..| .|+..+++. .+-||++|+|+.+++-|
T Consensus 100 KDp~PWkl~YrV-~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRV-EDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEe-ecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 567778888874 44443333 367777775 68899999999998855
No 65
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=29.89 E-value=2.2e+02 Score=20.63 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEe---ecccCceeeCCC
Q 032055 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFR---TKVFHPNINSNG 82 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~---t~i~Hpnv~~~G 82 (148)
+..++++.+..-..|+++....++ +.+ .|-+-.-...+. .+||.|-+- +.--|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCC
Confidence 456789999998999987543321 111 122211112221 369999874 335688888999
Q ss_pred ceeecCccc
Q 032055 83 SICLDILKE 91 (148)
Q Consensus 83 ~icl~~l~~ 91 (148)
.+|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999964
No 66
>PRK11700 hypothetical protein; Provisional
Probab=29.45 E-value=2.4e+02 Score=21.01 Aligned_cols=71 Identities=20% Similarity=0.454 Sum_probs=44.2
Q ss_pred CCceEEEEE---ECCCCCCC-CCcEEEEEEEcCC--------------CCCCCCCeeEEe--ec------ccCceee-CC
Q 032055 29 DMFHWQATI---MGPPDSPY-AGGVFLVSIHFPP--------------DYPFKPPKVAFR--TK------VFHPNIN-SN 81 (148)
Q Consensus 29 n~~~w~~~i---~gp~~t~y-~gg~f~~~i~fp~--------------~YP~~pP~i~f~--t~------i~Hpnv~-~~ 81 (148)
.+..|.+.. .=|.+.-| .-|.=|+++.+|. +.|..++-|++. +| .-+|-|- ++
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 345564443 33655555 6678889999883 344555545443 33 5678776 69
Q ss_pred CceeecCccccCCCCcCHHHHHHH
Q 032055 82 GSICLDILKEQWSPALTISKVLLS 105 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~ 105 (148)
|.+|+.+. .++|.+|+.+
T Consensus 167 ~~vcIK~H------P~slk~IV~S 184 (187)
T PRK11700 167 GGICIKFH------PHSIKEIVAS 184 (187)
T ss_pred CCEEEEEc------CccHHHHHHh
Confidence 99999766 3457766653
No 67
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=28.43 E-value=1.3e+02 Score=24.95 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=24.0
Q ss_pred CCCceeecCcc---ccCCCCc--CHHHHHHHHHHh
Q 032055 80 SNGSICLDILK---EQWSPAL--TISKVLLSICSL 109 (148)
Q Consensus 80 ~~G~icl~~l~---~~W~p~~--~i~~il~~l~~~ 109 (148)
.+|+||.++=- +...|.. +|.+++..|.++
T Consensus 335 ~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 335 KTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred CCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 39999997652 6677775 799999999888
No 68
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.69 E-value=94 Score=22.96 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.6
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeeEEe
Q 032055 47 GGVFLVSIHFPPDYPF-----KPPKVAFR 70 (148)
Q Consensus 47 gg~f~~~i~fp~~YP~-----~pP~i~f~ 70 (148)
.|.|.|.-.+|.-||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4789999999999995 77777664
No 69
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=27.45 E-value=45 Score=20.04 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhcC
Q 032055 4 KRILKELKDLQKD 16 (148)
Q Consensus 4 kRL~~E~~~l~~~ 16 (148)
+||++|++++.-.
T Consensus 37 ~rL~kEL~d~D~~ 49 (59)
T PF12065_consen 37 QRLRKELQDMDMC 49 (59)
T ss_pred HHHHHHHHHcccc
Confidence 6899999988654
No 70
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.13 E-value=74 Score=23.40 Aligned_cols=47 Identities=11% Similarity=0.258 Sum_probs=34.2
Q ss_pred CCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHh
Q 032055 93 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKY 145 (148)
Q Consensus 93 W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
|.....+..+...|...|..-+| +-+..|++|.+.|.++.++-.+++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~l~~l~~~~ 157 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDP------SEQEEYKENLRVFLAKLNKLLREW 157 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777788888999999987443 335578888888888776554443
No 71
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.09 E-value=1e+02 Score=23.98 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=36.1
Q ss_pred cCCCCcCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhCHHHHHHHHHHHHHHh
Q 032055 92 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKY 145 (148)
Q Consensus 92 ~W~p~~~i~~il~~l~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
-|.....+..++..|..-|.. ++++-+..|+.|-++|.++.++.-+++
T Consensus 123 iWldp~n~~~~a~~I~~~L~~------~dP~~~~~y~~N~~~~~~~L~~l~~~~ 170 (286)
T cd01019 123 LWLSPENAAEVAQAVAEKLSA------LDPDNAATYAANLEAFNARLAELDATI 170 (286)
T ss_pred cCCCHHHHHHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 377667788888999998887 334456689999999998877665544
No 72
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=24.33 E-value=1.7e+02 Score=24.45 Aligned_cols=100 Identities=11% Similarity=0.276 Sum_probs=55.0
Q ss_pred HHHHHHHhhcCCCCCeeEeecCCCCceEEEEEECCCCCCCCCcEEE---------EEEEcCCCCCCCCCeeEEeecccCc
Q 032055 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFL---------VSIHFPPDYPFKPPKVAFRTKVFHP 76 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~---------~~i~fp~~YP~~pP~i~f~t~i~Hp 76 (148)
+..|.++|...+|..-.+..... -...+.|. |... +-.+.++ +. .|...|+..||-+.....+.|-
T Consensus 250 ne~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~-vsRA-fGd~~lK~~~~n~e~l~~-~fr~~~~~t~PyltaeP~i~~H 324 (390)
T KOG0700|consen 250 NEDEVRRIRSEHPDDPHIVVNKH--WRVKGILQ-VSRA-FGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTAEPSITHH 324 (390)
T ss_pred cHHHHHHHHHhCCCCcceEeecc--ceeeEEEE-eeee-ccceeecchhhccchhHh-hcCCCCCCCCCceeccceEEEE
Confidence 56788888888776555543332 22233444 2222 3333322 12 7888999999999999888776
Q ss_pred eeeCCCceeecCcccc-CCCCcCHHHHHHHHHHhhcC
Q 032055 77 NINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 77 nv~~~G~icl~~l~~~-W~p~~~i~~il~~l~~~l~~ 112 (148)
-+.++-++=+ +-.++ |. .++=++++.-+...+..
T Consensus 325 rL~p~DkFLI-lASDGLwE-~lsNeeaV~lV~~~i~~ 359 (390)
T KOG0700|consen 325 KLTPNDKFLI-LASDGLWE-YLSNEEAVSLVHEFISG 359 (390)
T ss_pred EcCCCCeEEE-Eeccchhh-hcChHHHHHHHHHhhcc
Confidence 6665544322 00122 32 12334555555555553
No 73
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=24.13 E-value=30 Score=18.08 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=9.1
Q ss_pred ccCceeeCCCc-eeec
Q 032055 73 VFHPNINSNGS-ICLD 87 (148)
Q Consensus 73 i~Hpnv~~~G~-icl~ 87 (148)
.|||.++.+|+ .|..
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999998776 5654
No 74
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=23.82 E-value=1.3e+02 Score=26.06 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=21.8
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhc
Q 032055 121 PEIAHMYKTDKAKYESTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++..+|+++|.+.+++...++.
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 46777888999999999999887763
No 75
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=23.44 E-value=1.5e+02 Score=24.03 Aligned_cols=39 Identities=31% Similarity=0.560 Sum_probs=28.1
Q ss_pred ceEEEEEECCCCC-CCCCcEEEEEEE---cCCCCCCCCCeeEEe
Q 032055 31 FHWQATIMGPPDS-PYAGGVFLVSIH---FPPDYPFKPPKVAFR 70 (148)
Q Consensus 31 ~~w~~~i~gp~~t-~y~gg~f~~~i~---fp~~YP~~pP~i~f~ 70 (148)
.+|+..|.|-.++ -|++|.+++++. |-.. =.+.|+|||-
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~-~qR~PriRfG 239 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL-YQRGPRIRFG 239 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccc-cccCCceEee
Confidence 5689999994444 788999998876 3333 3456799994
No 76
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=23.02 E-value=1.5e+02 Score=26.10 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCCCCeeEeec----CCCCceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeecccCceeeCC
Q 032055 6 ILKELKDLQKDPPTSCSAGPV----AEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~----~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~Hpnv~~~ 81 (148)
|++|+..|.. .+.|.++ ++|--+..|.|. -+.-| .+++..|.+||.-.
T Consensus 624 lqgElarLD~----kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq~----------------- 675 (742)
T KOG4274|consen 624 LQGELARLDA----KFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQN----------------- 675 (742)
T ss_pred HHHHHHhhcc----ceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeeccccccccc-----------------
Confidence 6777777765 3444333 245444555554 33333 48889999999843
Q ss_pred CceeecCccccCCCCcCHHHHHHHHHHhhcCCCCCC
Q 032055 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDD 117 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~ 117 (148)
+|.+-- -.+..+.-+.++=.++++-|+.|...+
T Consensus 676 --~~vdr~-~~y~a~pflq~vq~s~~~RlsrP~~~S 708 (742)
T KOG4274|consen 676 --VTVDRA-VIYLAAPFLQDVQNSVYERLSRPGLSS 708 (742)
T ss_pred --hhhhhH-HHhhhcHHHHHHHHHHHHHHccCCcch
Confidence 343211 112333345666667777777665554
No 77
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=23.00 E-value=93 Score=21.79 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.7
Q ss_pred CCCCceEEEEEECCCCCCC
Q 032055 27 AEDMFHWQATIMGPPDSPY 45 (148)
Q Consensus 27 ~~n~~~w~~~i~gp~~t~y 45 (148)
..|...|.|++.|+.|++.
T Consensus 44 PGd~~~ytVtV~G~dGs~~ 62 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIR 62 (139)
T ss_pred CCCCcceEEEEECCCCcce
Confidence 4778889999999888765
No 78
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=22.36 E-value=39 Score=22.89 Aligned_cols=20 Identities=35% Similarity=0.772 Sum_probs=15.8
Q ss_pred CCCceeecCccccCCCCcCH
Q 032055 80 SNGSICLDILKEQWSPALTI 99 (148)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i 99 (148)
..|.+|.-.+..+|.|.+++
T Consensus 49 GGg~~CC~~~p~~W~pg~tv 68 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTV 68 (118)
T ss_pred CCceEEEEEcCCCCCCCCEE
Confidence 35667888888999999874
No 79
>PRK05414 urocanate hydratase; Provisional
Probab=22.26 E-value=1.4e+02 Score=25.95 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=22.2
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhc
Q 032055 121 PEIAHMYKTDKAKYESTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++..+|+++|.+.|++..+++.
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 47778889999999999999887763
No 80
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=21.85 E-value=1.4e+02 Score=25.77 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=22.0
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhc
Q 032055 121 PEIAHMYKTDKAKYESTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++..+|+++|.+.|++...++.
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 46778889999999999999887663
No 81
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=21.79 E-value=1.6e+02 Score=18.27 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=24.5
Q ss_pred eeeCCCceeecCccccCCCCcCHHHHHHHHHHhhcC
Q 032055 77 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 77 nv~~~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~ 112 (148)
-|+++|.|-+..+..---.+.|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 477899999999876666678888887777777665
No 82
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=20.73 E-value=2e+02 Score=20.87 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=33.4
Q ss_pred CCCCc-CHHHHHHHHHHhhcCCCCCCCCcHH----HHHHHhhCHHHHHHHHHHHHHHh
Q 032055 93 WSPAL-TISKVLLSICSLLTDPNPDDPLVPE----IAHMYKTDKAKYESTARSWTQKY 145 (148)
Q Consensus 93 W~p~~-~i~~il~~l~~~l~~p~~~~~~n~~----a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
..|.+ ++.+++..|..+|... -+|.| .-..|+.|+.++.+.|+.-.-+|
T Consensus 7 ~~p~~~sl~dLv~~lh~~F~~~----~vnveeV~~lM~sYkSnp~EWr~yAkFD~y~Y 60 (196)
T KOG4064|consen 7 LKPRMISLVDLVVQLHEIFQQK----LVNVEEVMKLMASYKSNPNEWRRYAKFDMYKY 60 (196)
T ss_pred cCchhhhHHHHHHHHHHHHHhc----ccCHHHHHHHHHHhhcCHHHHHHHHhhhHHHH
Confidence 44443 6888888998888753 23443 22357889999998888765554
No 83
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=20.57 E-value=1.3e+02 Score=19.84 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.9
Q ss_pred eEEEEEECCCCCCCCCcEEEEEEEcCC
Q 032055 32 HWQATIMGPPDSPYAGGVFLVSIHFPP 58 (148)
Q Consensus 32 ~w~~~i~gp~~t~y~gg~f~~~i~fp~ 58 (148)
-.|+.|.|++..+=.|..+.+++.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 478999999999899999999999864
No 84
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.48 E-value=1.6e+02 Score=23.14 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=26.5
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCC--CeeEEeec
Q 032055 42 DSPYAGGVFLVSIHFPPDYPFKP--PKVAFRTK 72 (148)
Q Consensus 42 ~t~y~gg~f~~~i~fp~~YP~~p--P~i~f~t~ 72 (148)
.+.+.|-.|++.+..|.+||-.- |.|.|+..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDG 47 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLDG 47 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEecc
Confidence 45688999999999999999988 99988743
No 85
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=20.33 E-value=81 Score=20.35 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHhhc
Q 032055 2 ASKRILKELKDLQK 15 (148)
Q Consensus 2 a~kRL~~E~~~l~~ 15 (148)
+++||.+|+....+
T Consensus 8 ~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 8 VVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777665544
Done!