BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032056
         (148 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
           Thaliana Protein Containing Duf538 Domain
          Length = 170

 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 32  LTNYGFPIGLLPVSVQSHTLNQTSGEFFVHLGGACRLTLPPDNYLATYSNKIRGKIEQGR 91
           L  Y  PIG+ P    ++  ++ + +  V +   C +    D+ +  ++  + G +E+G+
Sbjct: 58  LKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYK-DSSVLKFTTTVTGHLEKGK 116

Query: 92  IAELDGIRVRAFFKWWAITGIRSSGDNLVFEVGM 125
           + +++GI+ +    W  +T I +    + F  GM
Sbjct: 117 LTDVEGIKTKVMI-WVKVTSISTDASKVYFTAGM 149


>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
          Length = 123

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 91  RIAELDGIRVRAFFKWWAITGIRSSGDNLVFEV 123
           RI E+DG+ +R      A+  IR +G+ +VF V
Sbjct: 83  RIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115


>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
           (Mupp-1)
          Length = 103

 Score = 27.3 bits (59), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 91  RIAELDGIRVRAFFKWWAITGIRSSGDNLVFEV 123
           RI E+DG+ +R      A+  IR +G+ +VF V
Sbjct: 63  RIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95


>pdb|3OSV|A Chain A, The Crytsal Structure Of Flgd From P. Aeruginosa
 pdb|3OSV|B Chain B, The Crytsal Structure Of Flgd From P. Aeruginosa
 pdb|3OSV|C Chain C, The Crytsal Structure Of Flgd From P. Aeruginosa
 pdb|3OSV|D Chain D, The Crytsal Structure Of Flgd From P. Aeruginosa
          Length = 138

 Score = 26.9 bits (58), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 42  LPVSVQSHTLNQTSGEFFVHLGGACRLTL 70
           LP +V S TL Q  GE  ++L G   + L
Sbjct: 102 LPANVDSVTLGQNGGELMLNLAGLGSIAL 130


>pdb|3P51|A Chain A, Three-Dimensional Structure Of Protein Q2y8n9_nitmu From
           Nitrosospira Multiformis, Northeast Structural Genomics
           Consortium Target Nmr118
          Length = 160

 Score = 25.8 bits (55), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 21  DPNPPTLAHAELTNYGFPIGLLPVSVQSHTLNQTSGEF 58
           D  P  ++  E+ NY   + LLPV++   T  + SG +
Sbjct: 77  DEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSW 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,267,426
Number of Sequences: 62578
Number of extensions: 159059
Number of successful extensions: 280
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 5
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)