BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032056
         (148 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
           GN=At5g01610 PE=1 SV=1
          Length = 170

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 32  LTNYGFPIGLLPVSVQSHTLNQTSGEFFVHLGGACRLTLPPDNYLATYSNKIRGKIEQGR 91
           L  Y  PIG+ P    ++  ++ + +  V +   C +    D+ +  ++  + G +E+G+
Sbjct: 58  LKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYK-DSSVLKFTTTVTGHLEKGK 116

Query: 92  IAELDGIRVRAFFKWWAITGIRSSGDNLVFEVGMVTAK 129
           + +++GI+ +    W  +T I +    + F  GM  ++
Sbjct: 117 LTDVEGIKTKVMI-WVKVTSISTDASKVYFTAGMKKSR 153


>sp|P15276|ALGP_PSEAE Transcriptional regulatory protein AlgP OS=Pseudomonas aeruginosa
          (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
          GN=algP PE=4 SV=2
          Length = 352

 Score = 31.6 bits (70), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 43 PVSVQSHTLNQTSGEFFVHLGGACRLTLPPDNYLATYSNKIRGKIEQ 89
          PV+   H L Q S     HL GAC+  L     L     K RGK ++
Sbjct: 7  PVTTPLHLLQQLSHSLVEHLEGACKQALVDSEKLLAKLEKQRGKAQE 53


>sp|B2IS63|KAD_STRPS Adenylate kinase OS=Streptococcus pneumoniae (strain CGSP14) GN=adk
           PE=3 SV=1
          Length = 212

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 27  LAHAELTNYGFPIGLLPVSV-QSHTLNQTSGEFFVHLGGACRLTLPPDNYLATYSNKI 83
           L+  ++   GF +   P ++ Q+H L++T  E  + L G   + + PD+ L   S +I
Sbjct: 72  LSQDDIKETGFLLDGYPRTIEQAHALDKTLAELGIELEGVINIEVNPDSLLERLSGRI 129


>sp|Q97SU1|KAD_STRPN Adenylate kinase OS=Streptococcus pneumoniae serotype 4 (strain
           ATCC BAA-334 / TIGR4) GN=adk PE=1 SV=1
          Length = 212

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 27  LAHAELTNYGFPIGLLPVSV-QSHTLNQTSGEFFVHLGGACRLTLPPDNYLATYSNKI 83
           L+  ++   GF +   P ++ Q+H L++T  E  + L G   + + PD+ L   S +I
Sbjct: 72  LSQDDIKETGFLLDGYPRTIEQAHALDKTLAELGIELEGVINIEVNPDSLLERLSGRI 129


>sp|C1CAN3|KAD_STRP7 Adenylate kinase OS=Streptococcus pneumoniae (strain 70585) GN=adk
           PE=3 SV=1
          Length = 212

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 27  LAHAELTNYGFPIGLLPVSV-QSHTLNQTSGEFFVHLGGACRLTLPPDNYLATYSNKI 83
           L+  ++   GF +   P ++ Q+H L++T  E  + L G   + + PD+ L   S +I
Sbjct: 72  LSQDDIKETGFLLDGYPRTIEQAHALDKTLAELGIELEGVINIEVNPDSLLERLSGRI 129


>sp|B5E6H6|KAD_STRP4 Adenylate kinase OS=Streptococcus pneumoniae serotype 19F (strain
           G54) GN=adk PE=3 SV=1
          Length = 212

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 27  LAHAELTNYGFPIGLLPVSV-QSHTLNQTSGEFFVHLGGACRLTLPPDNYLATYSNKI 83
           L+  ++   GF +   P ++ Q+H L++T  E  + L G   + + PD+ L   S +I
Sbjct: 72  LSQDDIKETGFLLDGYPRTIEQAHALDKTLAELGIELEGVINIEVNPDSLLERLSGRI 129


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,485,689
Number of Sequences: 539616
Number of extensions: 2286896
Number of successful extensions: 4211
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4210
Number of HSP's gapped (non-prelim): 6
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)