Query 032056
Match_columns 148
No_of_seqs 105 out of 340
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 14:27:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 100.0 7.2E-47 2.5E-51 297.1 5.2 119 24-145 50-168 (170)
2 2j97_A Replicase polyprotein 1 40.0 56 0.0019 23.5 5.1 30 50-79 53-83 (109)
3 1uw7_A NSP9; viral protein, re 38.6 39 0.0013 25.4 4.2 32 48-79 85-117 (143)
4 3ee7_A Replicase polyprotein 1 38.1 34 0.0012 25.0 3.8 32 48-79 55-87 (121)
5 2nzc_A Hypothetical protein; s 37.9 11 0.00038 25.9 1.1 17 89-105 66-82 (86)
6 3qth_A Uncharacterized protein 37.1 12 0.00042 28.8 1.3 15 26-40 144-158 (176)
7 3dex_A SAV_2001; alpha-beta pr 32.6 86 0.0029 22.2 5.1 33 27-66 32-65 (107)
8 2npb_A Selenoprotein W; struct 31.7 47 0.0016 22.9 3.5 35 27-68 22-58 (96)
9 2oqm_A Hypothetical protein; s 31.3 14 0.00049 28.9 0.9 15 26-40 163-177 (192)
10 2k8q_A Protein SHQ1; beta-sand 29.7 32 0.0011 25.4 2.5 20 47-66 63-82 (134)
11 2p0g_A Selenoprotein W-related 26.0 59 0.002 22.9 3.3 35 27-68 23-58 (105)
12 3elg_A Uncharacterized peripla 25.9 43 0.0015 23.8 2.6 44 36-79 72-126 (128)
13 2oka_A Hypothetical protein; P 25.6 59 0.002 22.9 3.2 35 27-68 25-60 (104)
14 3p7j_A Heterochromatin protein 22.7 63 0.0022 22.1 2.8 28 33-62 18-45 (87)
15 3pvd_A Capsid; greek KEY, mixe 22.2 86 0.003 26.3 4.1 38 45-84 261-298 (316)
16 2ekk_A UBA domain from E3 ubiq 20.8 24 0.00082 20.8 0.3 18 22-39 6-23 (47)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=100.00 E-value=7.2e-47 Score=297.13 Aligned_cols=119 Identities=16% Similarity=0.427 Sum_probs=114.1
Q ss_pred CCccHHHHHhhCCCCCCCCCCCceeEEEecCCcEEEEEeCCeeEEEeCCCceEEEecceEEEEEcccccccccceEEEEE
Q 032056 24 PPTLAHAELTNYGFPIGLLPVSVQSHTLNQTSGEFFVHLGGACRLTLPPDNYLATYSNKIRGKIEQGRIAELDGIRVRAF 103 (148)
Q Consensus 24 ~~~tayelL~~~glP~GLLP~~V~~y~l~~~tG~f~v~l~~~C~~~f~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~K~l 103 (148)
+.+++||+|++||||+||||++|++|+||++||+|||+|+++|+|+|+ ++|+|+|+++|||+|++|+|++|+|||+|+|
T Consensus 50 ~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~-~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~L 128 (170)
T 1ydu_A 50 MQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYK-DSSVLKFTTTVTGHLEKGKLTDVEGIKTKVM 128 (170)
T ss_dssp TTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEEST-TSSEEEECSEEEEEECSSCEEEEESCEEESS
T ss_pred ccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEec-CccEEEEcCEEEEEEcCCcCccccCEEEEEE
Confidence 346999999999999999999999999999999999999999999997 5899999999999999999999999999999
Q ss_pred EeeeeeEEEEEeCCeEEEEEceeeeeeecCCccCCCCCCCCC
Q 032056 104 FKWWAITGIRSSGDNLVFEVGMVTAKYPSKNFDESPECDGHK 145 (148)
Q Consensus 104 f~Wv~V~eI~v~~~~i~F~vg~~s~sFP~s~F~~~p~C~~~~ 145 (148)
+|++|+||.|++++|+|++| ++++||+++|+.+|.|...+
T Consensus 129 -lWv~V~eI~v~~~kI~F~vG-i~ksfp~saFe~~~~c~~~~ 168 (170)
T 1ydu_A 129 -IWVKVTSISTDASKVYFTAG-MKKSRSRDAYGVQRNGLRVD 168 (170)
T ss_dssp -SEESCCCBEECSSSEECTTS-SSSCCCHHHHSSCCCCCCTT
T ss_pred -EEeeEEEEEEeCCEEEEEEc-CcccccHHHhcCCcCCcccC
Confidence 99999999999999999998 68999999999999998764
No 2
>2j97_A Replicase polyprotein 1AB; SSB, zinc, HCOV, membrane, helicase, SARS COV, viral replicase, RNA replication, ATP-binding; 1.75A {Human coronavirus 229E} PDB: 2j98_A 2j98_B
Probab=40.01 E-value=56 Score=23.48 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=22.5
Q ss_pred EEecCCcEEEEEeCCeeEEEeCC-CceEEEe
Q 032056 50 TLNQTSGEFFVHLGGACRLTLPP-DNYLATY 79 (148)
Q Consensus 50 ~l~~~tG~f~v~l~~~C~~~f~~-~~~~v~Y 79 (148)
....++|...+.|+-+|.|.++. ++-+|.|
T Consensus 53 k~e~d~g~v~iELePPckF~v~~~~G~~vkY 83 (109)
T 2j97_A 53 KWEHDSGVVTVELEPPCRFVIDTPTGPQIKY 83 (109)
T ss_dssp EECCSSSCEEEEBCCCEEEEECCTTSCEEEE
T ss_pred EEEccCCEEEEEcCCCcEEEEECCCCCEEEE
Confidence 33456899999999999999874 3455655
No 3
>1uw7_A NSP9; viral protein, replicase protein, RNA-binding; 2.8A {Sars coronavirus hku-39849} SCOP: b.140.1.1
Probab=38.65 E-value=39 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=22.6
Q ss_pred eEEEecCCcEEEEEeCCeeEEEeCCC-ceEEEe
Q 032056 48 SHTLNQTSGEFFVHLGGACRLTLPPD-NYLATY 79 (148)
Q Consensus 48 ~y~l~~~tG~f~v~l~~~C~~~f~~~-~~~v~Y 79 (148)
.+..+..+|...+.|+-+|.|.++.. +-.|.|
T Consensus 85 k~e~d~G~g~v~iELePPckF~v~~~~G~~VkY 117 (143)
T 1uw7_A 85 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKY 117 (143)
T ss_dssp EEECTTSSCEEEEEBCCCCEEEECCTTSCEEEE
T ss_pred EEEecCCceEEEEecCCCcEEEEEcCCCCEEEE
Confidence 45555456699999999999988632 344554
No 4
>3ee7_A Replicase polyprotein 1A; GXXXG, dimerization, SARS-COV, helix-helix, hydrolase, membr metal-binding, protease, RNA-binding, thiol protease; 2.60A {Sars coronavirus} SCOP: b.140.1.1 PDB: 1qz8_A
Probab=38.09 E-value=34 Score=25.00 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=21.5
Q ss_pred eEEEecCCcEEEEEeCCeeEEEeCCC-ceEEEe
Q 032056 48 SHTLNQTSGEFFVHLGGACRLTLPPD-NYLATY 79 (148)
Q Consensus 48 ~y~l~~~tG~f~v~l~~~C~~~f~~~-~~~v~Y 79 (148)
.+..+..||...+.|+-+|.|.++.. +-.|.|
T Consensus 55 k~e~d~G~g~v~iELePPckF~v~~~~g~~vkY 87 (121)
T 3ee7_A 55 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKY 87 (121)
T ss_dssp EECCC--CEEEEEEBCCCEEEEECCTTSCEEEE
T ss_pred EEEecCCCCeEEEecCCCcEEEEEcCCCCEEEE
Confidence 45555445899999999999988632 444554
No 5
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=37.92 E-value=11 Score=25.93 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=14.5
Q ss_pred ccccccccceEEEEEEe
Q 032056 89 QGRIAELDGIRVRAFFK 105 (148)
Q Consensus 89 ~g~i~~L~GVk~K~lf~ 105 (148)
.|++.+|+||++|-...
T Consensus 66 ~gkLg~i~GV~vKt~~~ 82 (86)
T 2nzc_A 66 SGKLGQISGVRVKTVPL 82 (86)
T ss_dssp HHHHHTSTTEEEEEEEC
T ss_pred HHHhCCCCCEEEEEEEe
Confidence 57999999999998753
No 6
>3qth_A Uncharacterized protein; DINB/YFIT-like putative metalloenzymes, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.20A {Colwellia psychrerythraea}
Probab=37.08 E-value=12 Score=28.81 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=14.0
Q ss_pred ccHHHHHhhCCCCCC
Q 032056 26 TLAHAELTNYGFPIG 40 (148)
Q Consensus 26 ~tayelL~~~glP~G 40 (148)
.|||.+|+..|.|.|
T Consensus 144 tTAYaILR~~GV~LG 158 (176)
T 3qth_A 144 SMVYAIAKNNGVSVT 158 (176)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCcC
Confidence 499999999999998
No 7
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=32.61 E-value=86 Score=22.22 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=23.5
Q ss_pred cHHHHHhhCCCCCCCCCCCceeEEEec-CCcEEEEEeCCee
Q 032056 27 LAHAELTNYGFPIGLLPVSVQSHTLNQ-TSGEFFVHLGGAC 66 (148)
Q Consensus 27 tayelL~~~glP~GLLP~~V~~y~l~~-~tG~f~v~l~~~C 66 (148)
-|.|+|.++ |..+.+.++.+ .+|.|+|.+++.-
T Consensus 32 laqeLl~tF-------~~~l~eVsL~Pg~gG~FeV~vdg~l 65 (107)
T 3dex_A 32 LAQELLTTF-------ETELTELALKPGTGGVFVVRVDDEV 65 (107)
T ss_dssp HHHHHHHHS-------TTTEEEEEEEEESSSCEEEEETTEE
T ss_pred HHHHHHHhc-------ccccceEEEEeCCCceEEEEECCEE
Confidence 467788876 35556677776 5688999987654
No 8
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=31.70 E-value=47 Score=22.90 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=22.6
Q ss_pred cHHHHHhhCCCCCCCCCCCce-eEEEec-CCcEEEEEeCCeeEE
Q 032056 27 LAHAELTNYGFPIGLLPVSVQ-SHTLNQ-TSGEFFVHLGGACRL 68 (148)
Q Consensus 27 tayelL~~~glP~GLLP~~V~-~y~l~~-~tG~f~v~l~~~C~~ 68 (148)
-+-++|+++ |..+. +..+.+ .+|.|+|++++.--+
T Consensus 22 laqeLl~~F-------p~~l~V~~~l~p~~~G~FEV~vng~lV~ 58 (96)
T 2npb_A 22 LKEKLEHEF-------PGCLDICGEGTPQVTGFFEVTVAGKLVH 58 (96)
T ss_dssp HHHHHHHHS-------BTTEEEEECCCSSCCSCCEEEETTEEEE
T ss_pred HHHHHHHhC-------CcceEEEEEEcCCCCcEEEEEECCEEEE
Confidence 345667666 44455 555654 479999999875444
No 9
>2oqm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.83A {Shewanella denitrificans} SCOP: a.213.1.3
Probab=31.28 E-value=14 Score=28.86 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=13.9
Q ss_pred ccHHHHHhhCCCCCC
Q 032056 26 TLAHAELTNYGFPIG 40 (148)
Q Consensus 26 ~tayelL~~~glP~G 40 (148)
.|||.+|+..|.|.|
T Consensus 163 tTAYaILR~~GV~LG 177 (192)
T 2oqm_A 163 TTAYGILRHNGVEVG 177 (192)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCCCC
Confidence 489999999999988
No 10
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=29.73 E-value=32 Score=25.39 Aligned_cols=20 Identities=5% Similarity=0.006 Sum_probs=16.1
Q ss_pred eeEEEecCCcEEEEEeCCee
Q 032056 47 QSHTLNQTSGEFFVHLGGAC 66 (148)
Q Consensus 47 ~~y~l~~~tG~f~v~l~~~C 66 (148)
..-.++.++|.|.|+|++..
T Consensus 63 ~kA~YD~d~~~~~VtLpK~~ 82 (134)
T 2k8q_A 63 STAQYDSKDECINVKVAKLN 82 (134)
T ss_dssp CEEEEETTTTEEEEEEEESS
T ss_pred cceeEeccCCEEEEEEeCCC
Confidence 45778888999999998654
No 11
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=25.95 E-value=59 Score=22.88 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=22.5
Q ss_pred cHHHHHhhCCCCCCCCCCCceeEEEec-CCcEEEEEeCCeeEE
Q 032056 27 LAHAELTNYGFPIGLLPVSVQSHTLNQ-TSGEFFVHLGGACRL 68 (148)
Q Consensus 27 tayelL~~~glP~GLLP~~V~~y~l~~-~tG~f~v~l~~~C~~ 68 (148)
-+-|+|.+++ ..+.+.++.+ .+|.|+|++++.--+
T Consensus 23 laqeLl~tF~-------~~l~~v~l~P~~~G~FEV~vng~lV~ 58 (105)
T 2p0g_A 23 LSQELLHTFS-------EEIEYVALHPDTGGRFEIFCNGVQIW 58 (105)
T ss_dssp HHHHHHHHTT-------TTEEEEEEEEESTTCEEEEETTEEEE
T ss_pred HHHHHHHHcC-------cccceEEEEeCCCceEEEEECCEEEE
Confidence 3556666653 3345666765 478999999865433
No 12
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=25.89 E-value=43 Score=23.76 Aligned_cols=44 Identities=7% Similarity=0.180 Sum_probs=27.6
Q ss_pred CCCCCCCCCCceeE-----------EEecCCcEEEEEeCCeeEEEeCCCceEEEe
Q 032056 36 GFPIGLLPVSVQSH-----------TLNQTSGEFFVHLGGACRLTLPPDNYLATY 79 (148)
Q Consensus 36 glP~GLLP~~V~~y-----------~l~~~tG~f~v~l~~~C~~~f~~~~~~v~Y 79 (148)
.+|...||+.|..| ...++.+..+|.|...-++.|...+..++.
T Consensus 72 ~ip~~~lP~~V~~~i~~~yp~~~I~~iek~~~~YeVeL~~~~el~fd~~G~~i~~ 126 (128)
T 3elg_A 72 SVPSTFIPQAISKYMKANYNGHKTVKIERNRKGYELTLENGLEVDFDQFGGFLKL 126 (128)
T ss_dssp CCCGGGSCHHHHHHHHHHSTTCCEEEEEEETTEEEEEETTSCEEEECTTSCEEEE
T ss_pred cCchHHCCHHHHHHHHHHCCCCEEEEEEEeCCEEEEEECCCeEEEEeCCCCEEec
Confidence 35666666544332 233446788888888788888766655554
No 13
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=25.59 E-value=59 Score=22.87 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=22.3
Q ss_pred cHHHHHhhCCCCCCCCCCCceeEEEec-CCcEEEEEeCCeeEE
Q 032056 27 LAHAELTNYGFPIGLLPVSVQSHTLNQ-TSGEFFVHLGGACRL 68 (148)
Q Consensus 27 tayelL~~~glP~GLLP~~V~~y~l~~-~tG~f~v~l~~~C~~ 68 (148)
-+-|+|++++ +.+.+.++.+ .+|.|+|++++.--+
T Consensus 25 laqeLl~tF~-------~~l~~v~l~P~~~G~FEV~vng~lV~ 60 (104)
T 2oka_A 25 LAQELLSTFA-------DDLGKVCLEPGTGGVFRITCDGVQVW 60 (104)
T ss_dssp HHHHHHHHST-------TTCSEEEEEEECTTCEEEEETTEEEE
T ss_pred HHHHHHHHcC-------cccceEEEEeCCCceEEEEECCEEEE
Confidence 4566777653 2344566655 479999999865433
No 14
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=22.70 E-value=63 Score=22.08 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=20.2
Q ss_pred hhCCCCCCCCCCCceeEEEecCCcEEEEEe
Q 032056 33 TNYGFPIGLLPVSVQSHTLNQTSGEFFVHL 62 (148)
Q Consensus 33 ~~~glP~GLLP~~V~~y~l~~~tG~f~v~l 62 (148)
+.+||.|||=|+.|.+..- .+|.+..-.
T Consensus 18 k~~GF~RGle~EkIlgat~--~~Gel~fLV 45 (87)
T 3p7j_A 18 GSTGFDRGLEAEKILGASD--NNGRLTFLI 45 (87)
T ss_dssp --CTTTTTCCEEEEEEEEE--ETTEEEEEE
T ss_pred CCCCccCCCCceEEeeEEc--cCCcEEEEE
Confidence 4689999999999888763 368765543
No 15
>3pvd_A Capsid; greek KEY, mixed alpha/beta structure, receptor binding, carbohydrate/sugar binding, viral protein; HET: SIA GAL NDG FUC; 1.90A {Human calicivirus} PDB: 3pum_A* 3pun_A*
Probab=22.18 E-value=86 Score=26.33 Aligned_cols=38 Identities=13% Similarity=0.347 Sum_probs=28.9
Q ss_pred CceeEEEecCCcEEEEEeCCeeEEEeCCCceEEEecceEE
Q 032056 45 SVQSHTLNQTSGEFFVHLGGACRLTLPPDNYLATYSNKIR 84 (148)
Q Consensus 45 ~V~~y~l~~~tG~f~v~l~~~C~~~f~~~~~~v~Y~~~It 84 (148)
.+-|+.|.++ |+++|.-.+.-...+..++| ++|++=|+
T Consensus 261 vLfE~KLy~~-Gf~Tv~~sg~~p~~~P~nGy-FrF~SWVn 298 (316)
T 3pvd_A 261 ALFESKLHKQ-GFMTIASSGDHPIIMPTNGY-FRFEAWVN 298 (316)
T ss_dssp EEEEEEEETT-TEEEEECCSSEEECCCTTCE-EEEEEEEC
T ss_pred EEEEEEecCC-ceEEEecCCCCceEeCCCCE-EEEeEccc
Confidence 4568999974 99999777777677777777 88877664
No 16
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.83 E-value=24 Score=20.79 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=13.8
Q ss_pred CCCCccHHHHHhhCCCCC
Q 032056 22 PNPPTLAHAELTNYGFPI 39 (148)
Q Consensus 22 ~~~~~tayelL~~~glP~ 39 (148)
+.+.....+-|.++|||+
T Consensus 6 ~~~~~~~v~~L~~MGF~~ 23 (47)
T 2ekk_A 6 SGVNQQQLQQLMDMGFTR 23 (47)
T ss_dssp CSSCHHHHHHHHHHHCCH
T ss_pred CCCCHHHHHHHHHcCCCH
Confidence 344567888899999986
Done!