BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032058
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CXY9|GPI8_MOUSE GPI-anchor transamidase OS=Mus musculus GN=Pigk PE=2 SV=2
Length = 395
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 6 SLSSLFTSYNPTLLMSTTYYRTDLYQRKLEEVPMTNFFGSV 46
+++ LF +L +ST +RTDL+QR + V +T+FFGSV
Sbjct: 267 NMNDLFQVCPKSLCVSTPGHRTDLFQRDPKNVLITDFFGSV 307
>sp|Q92643|GPI8_HUMAN GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2
Length = 395
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 6 SLSSLFTSYNPTLLMSTTYYRTDLYQRKLEEVPMTNFFGSV 46
+++ LF +L +ST +RTDL+QR + V +T+FFGSV
Sbjct: 267 NMNDLFQVCPKSLCVSTPGHRTDLFQRDPKNVLITDFFGSV 307
>sp|Q5R6L8|GPI8_PONAB GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1
Length = 395
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 6 SLSSLFTSYNPTLLMSTTYYRTDLYQRKLEEVPMTNFFGSV 46
+++ LF +L +ST +RTDL+QR + V +T+FFGSV
Sbjct: 267 NMNDLFQVCPKSLCVSTPGHRTDLFQRDPKNVLITDFFGSV 307
>sp|Q3MHZ7|GPI8_BOVIN GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1
Length = 395
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 6 SLSSLFTSYNPTLLMSTTYYRTDLYQRKLEEVPMTNFFGSV 46
+++ LF +L +ST +RTDL+QR + V +T+FFGSV
Sbjct: 267 NMNDLFQVCPRSLCVSTPGHRTDLFQRDPKNVLITDFFGSV 307
>sp|Q4KRV1|GPI8_PIG GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2 SV=1
Length = 395
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 6 SLSSLFTSYNPTLLMSTTYYRTDLYQRKLEEVPMTNFFGSV 46
+++ LF +L +ST +RTD +QR + V +T+FFGSV
Sbjct: 267 NMNDLFQVCPKSLCVSTPGHRTDPFQRDPKHVLITDFFGSV 307
>sp|Q8T4E1|GPI8_DROME Putative GPI-anchor transamidase OS=Drosophila melanogaster
GN=CG4406 PE=2 SV=1
Length = 355
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 18 LLMSTTYYRTDLYQRKLEEVPMTNFFGSVMET-IHTD 53
+ +ST R DLY R +VP+T+FFG++ T + TD
Sbjct: 280 VCISTVGVRKDLYPRDPHKVPITDFFGAIRPTRVSTD 316
>sp|P49018|GPI8_YEAST GPI-anchor transamidase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GPI8 PE=1 SV=1
Length = 411
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 6 SLSSLFTSYNPTLLMSTTYYRTDLYQRKLEEVPMTNFFGSVMETIHTDS 54
+L LF S+ + S RTDL+ R EV +T+FF +V I DS
Sbjct: 260 TLQDLFDSFTFEKIHSHVGVRTDLFDRNPSEVLITDFFANVQNVIPDDS 308
>sp|O85467|GERIA_BACCE Spore germination protein GerIA OS=Bacillus cereus GN=gerIA PE=3
SV=1
Length = 663
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 51 HTDSAYRTTRSRKTSETKMPLQQSVKHDERRQLINSNVQDQTSDTKIEDKQCPFTRRWNA 110
DS+ +S K ++ QQ+ K DE Q + Q + I D P R ++
Sbjct: 129 QGDSSQDKQQSAKQGDSSQDKQQNAKQDEPSQ----SKQQSSGGNSIYDFTKPEKDRIHS 184
Query: 111 FQDKLEKIERIDSLVNY 127
Q+ +EK+++ VNY
Sbjct: 185 LQNLIEKLKKSSDFVNY 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,546,807
Number of Sequences: 539616
Number of extensions: 1777251
Number of successful extensions: 4890
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4879
Number of HSP's gapped (non-prelim): 13
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)