Query 032058
Match_columns 148
No_of_seqs 107 out of 149
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 09:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1349 Gpi-anchor transamidas 99.6 9.2E-17 2E-21 137.8 3.1 56 2-57 247-302 (309)
2 COG5206 GPI8 Glycosylphosphati 99.4 2.4E-14 5.3E-19 124.5 1.8 55 1-55 246-300 (382)
3 COG4068 Uncharacterized protei 42.7 23 0.0005 25.1 2.3 33 109-144 30-62 (64)
4 COG4200 Uncharacterized protei 39.5 30 0.00064 30.0 2.9 24 124-147 141-164 (239)
5 PF01743 PolyA_pol: Poly A pol 31.9 13 0.00029 27.6 -0.4 34 16-49 78-120 (126)
6 PF12451 VPS11_C: Vacuolar pro 30.7 13 0.00028 24.3 -0.5 10 38-47 37-47 (49)
7 PF03818 MadM: Malonate/sodium 24.7 79 0.0017 22.2 2.5 24 123-146 7-30 (60)
8 PF12259 DUF3609: Protein of u 20.8 90 0.0019 27.9 2.7 31 113-143 288-320 (361)
9 KOG2641 Predicted seven transm 20.2 74 0.0016 29.1 2.1 21 126-146 71-91 (386)
10 PF03619 Solute_trans_a: Organ 19.5 93 0.002 25.9 2.4 21 127-147 40-60 (274)
No 1
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9.2e-17 Score=137.81 Aligned_cols=56 Identities=45% Similarity=0.595 Sum_probs=49.6
Q ss_pred CChhhHHHHHhcCCCCccccccccccccCCCCCCCccccccCCccceEEecCCccc
Q 032058 2 YDNPSLSSLFTSYNPTLLMSTTYYRTDLYQRKLEEVPMTNFFGSVMETIHTDSAYR 57 (148)
Q Consensus 2 ~S~aTL~dLF~Sy~~~~~~St~GvRtDLf~R~l~~V~ITDFFGSV~~Vel~~s~~~ 57 (148)
.++.||+|||++||+++|+||||+|+|||+|+|++|+||||||+||...++.+.+.
T Consensus 247 ~~~~~l~dl~~s~~~~~~~St~gvr~dl~~r~~~~v~itDFFg~vr~~~~~~~~~~ 302 (309)
T KOG1349|consen 247 AKNRTLQDLFDSCPKRLLGSTPGVRTDLYQRDPKDVLITDFFGSVRIELHTSEEIK 302 (309)
T ss_pred chhhhHHHHHHhCChhhhcCCcCcccccccCCcccceeeeecccceeEeccchhhc
Confidence 35669999999999999999999999999999999999999999996666555443
No 2
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.4e-14 Score=124.54 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=52.3
Q ss_pred CCChhhHHHHHhcCCCCccccccccccccCCCCCCCccccccCCccceEEecCCc
Q 032058 1 MYDNPSLSSLFTSYNPTLLMSTTYYRTDLYQRKLEEVPMTNFFGSVMETIHTDSA 55 (148)
Q Consensus 1 ~~S~aTL~dLF~Sy~~~~~~St~GvRtDLf~R~l~~V~ITDFFGSV~~Vel~~s~ 55 (148)
+.|+.||||||++|+++.+|||||+|.++|.|+|+++++|||||+||+++++...
T Consensus 246 ~~skltlqDL~~s~n~e~ihS~~gv~~~~fdr~p~d~litDFF~nVqn~~l~~~k 300 (382)
T COG5206 246 IGSKLTLQDLLASLNKEPIHSHVGVRELVFDRRPSDFLITDFFANVQNSALELLK 300 (382)
T ss_pred cCCeeEHHHHHHhcCcccccCCCCcccccccCCccceeehHhhhhhhhcchhhcc
Confidence 4689999999999999999999999999999999999999999999999998765
No 3
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=42.74 E-value=23 Score=25.09 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=21.4
Q ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHHHHHHhHh
Q 032058 109 NAFQDKLEKIERIDSLVNYGFIIMFPLLLISTWLLL 144 (148)
Q Consensus 109 ~~~~~~~~~~~~~d~~v~ygl~~m~~ll~~~~wls~ 144 (148)
.++++|-.+-...-++..|+++. |+++.+||++
T Consensus 30 ~eil~ker~R~r~~~~~~~li~a---Li~v~vvL~~ 62 (64)
T COG4068 30 GEILNKERKRQRNFMILMFLILA---LILVMVVLPY 62 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcc
Confidence 45666555555555666677655 4778889875
No 4
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.46 E-value=30 Score=29.97 Aligned_cols=24 Identities=29% Similarity=0.740 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhc
Q 032058 124 LVNYGFIIMFPLLLISTWLLLIFV 147 (148)
Q Consensus 124 ~v~ygl~~m~~ll~~~~wls~~~~ 147 (148)
+.-||++.-+|+.++=.||||.|-
T Consensus 141 ~~~~gll~alpl~~lQ~wLsm~fk 164 (239)
T COG4200 141 LLILGLLLALPLVALQFWLSMRFK 164 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445999999999999999999884
No 5
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=31.95 E-value=13 Score=27.56 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=24.7
Q ss_pred CCccccccccccccCCCC---------CCCccccccCCccceE
Q 032058 16 PTLLMSTTYYRTDLYQRK---------LEEVPMTNFFGSVMET 49 (148)
Q Consensus 16 ~~~~~St~GvRtDLf~R~---------l~~V~ITDFFGSV~~V 49 (148)
|..+...+..+.||.+|+ +..-.|-|+||++..+
T Consensus 78 ~~~~~~~~~i~~Dl~rRDFTiNAla~~~~~~~liDp~gG~~DL 120 (126)
T PF01743_consen 78 PDVVEFGPTIEEDLKRRDFTINALAYDLETGKLIDPFGGLEDL 120 (126)
T ss_dssp -CCCCCSSTHHHHHCTSSBGGGSEEEECTTTCEEESSSHHHHH
T ss_pred cccccccCCHHHHHHhcCCeehheeEECCCCeEEcCCCCHHHH
Confidence 344455557888999998 4577899999987654
No 6
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=30.73 E-value=13 Score=24.28 Aligned_cols=10 Identities=40% Similarity=0.966 Sum_probs=8.0
Q ss_pred cccccCC-ccc
Q 032058 38 PMTNFFG-SVM 47 (148)
Q Consensus 38 ~ITDFFG-SV~ 47 (148)
.|+|||| +|+
T Consensus 37 vIaeyfGrGv~ 47 (49)
T PF12451_consen 37 VIAEYFGRGVM 47 (49)
T ss_pred hHHHHHccccc
Confidence 6899999 665
No 7
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=24.69 E-value=79 Score=22.18 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhHhhh
Q 032058 123 SLVNYGFIIMFPLLLISTWLLLIF 146 (148)
Q Consensus 123 ~~v~ygl~~m~~ll~~~~wls~~~ 146 (148)
.+..+||++-+-++-+..|+|+..
T Consensus 7 vl~~ngLitaFa~vG~~m~~S~~l 30 (60)
T PF03818_consen 7 VLTKNGLITAFAVVGIIMWVSYWL 30 (60)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHH
Confidence 466789999988888888998764
No 8
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=20.80 E-value=90 Score=27.95 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=22.6
Q ss_pred HHHhhhcCcchh--hhhHHHHHHHHHHHHHHhH
Q 032058 113 DKLEKIERIDSL--VNYGFIIMFPLLLISTWLL 143 (148)
Q Consensus 113 ~~~~~~~~~d~~--v~ygl~~m~~ll~~~~wls 143 (148)
.+++++++.+++ .-.|.++|.++++..+|+-
T Consensus 288 ~~~~~~~~~~~~~i~v~~~~vli~vl~~~~~~~ 320 (361)
T PF12259_consen 288 KNLEQIGDYPIVHIAVCGAIVLIIVLISLAWLY 320 (361)
T ss_pred hhhhhhcCCceEEEehhHHHHHHHHHHHHHhhe
Confidence 667788887777 4466777777787888873
No 9
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=20.15 E-value=74 Score=29.10 Aligned_cols=21 Identities=14% Similarity=0.453 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHhHhhh
Q 032058 126 NYGFIIMFPLLLISTWLLLIF 146 (148)
Q Consensus 126 ~ygl~~m~~ll~~~~wls~~~ 146 (148)
.|.|+.|.|+.++..|+||++
T Consensus 71 iv~il~mvPIys~~S~vsl~~ 91 (386)
T KOG2641|consen 71 IVRILFMVPIYSVASFVSLLV 91 (386)
T ss_pred hhhhhhhhHHHHHHHHHHHhc
Confidence 378999999999999999985
No 10
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=19.49 E-value=93 Score=25.85 Aligned_cols=21 Identities=29% Similarity=0.592 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHhHhhhc
Q 032058 127 YGFIIMFPLLLISTWLLLIFV 147 (148)
Q Consensus 127 ygl~~m~~ll~~~~wls~~~~ 147 (148)
.-++.|.|+-++.+|+|+++.
T Consensus 40 irIl~m~Piyai~S~~sl~~p 60 (274)
T PF03619_consen 40 IRILLMVPIYAICSLLSLLFP 60 (274)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 458899999999999999863
Done!