Query 032058
Match_columns 148
No_of_seqs 107 out of 149
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 14:30:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zvv_Y Cyclin-dependent kinase 25.6 22 0.00076 20.4 0.8 22 31-52 1-22 (26)
2 2k47_A Phosphoprotein, P prote 14.2 47 0.0016 23.4 0.5 12 35-46 23-34 (79)
3 2lx0_A Membrane fusion protein 12.2 1.8E+02 0.0062 17.1 2.6 19 125-143 8-26 (32)
4 1y8x_B Ubiquitin-activating en 10.5 96 0.0033 21.9 1.2 26 3-28 13-40 (98)
5 2l14_B Cellular tumor antigen 9.2 1.3E+02 0.0043 19.5 1.3 22 2-23 2-23 (49)
6 2k8f_B Cellular tumor antigen 9.1 1.6E+02 0.0055 18.1 1.7 21 2-22 14-34 (39)
7 1zl8_A LIN-7; heterodimer, alp 9.0 18 0.00061 23.9 -2.9 16 34-49 33-48 (53)
8 2qyw_A Vesicle transport throu 8.3 74 0.0025 22.2 -0.1 26 2-27 8-33 (102)
9 2kog_A Vesicle-associated memb 6.5 4.7E+02 0.016 18.7 3.5 16 86-101 64-79 (119)
10 2kyj_A LITX; scorpion toxin, i 6.2 1.7E+02 0.0057 17.7 0.7 9 37-45 2-10 (36)
No 1
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=25.64 E-value=22 Score=20.36 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=17.8
Q ss_pred CCCCCCccccccCCccceEEec
Q 032058 31 QRKLEEVPMTNFFGSVMETIHT 52 (148)
Q Consensus 31 ~R~l~~V~ITDFFGSV~~Vel~ 52 (148)
.|..++.-+|||.-|-+.+...
T Consensus 1 ~rKrkQTs~TDFYhsKRRlvf~ 22 (26)
T 2zvv_Y 1 GRKRRQTSMTDFYHSKRRLIFS 22 (26)
T ss_pred CCcccccchhHHHhhhceEEEE
Confidence 3667888999999998888764
No 2
>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus}
Probab=14.23 E-value=47 Score=23.39 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=9.6
Q ss_pred CCccccccCCcc
Q 032058 35 EEVPMTNFFGSV 46 (148)
Q Consensus 35 ~~V~ITDFFGSV 46 (148)
=-|.+||||+|-
T Consensus 23 ltV~L~elFsSr 34 (79)
T 2k47_A 23 LTISLDELFSSR 34 (79)
T ss_dssp EEEESGGGCCCH
T ss_pred eEEEHHHHhcCc
Confidence 357899999974
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=12.21 E-value=1.8e+02 Score=17.07 Aligned_cols=19 Identities=26% Similarity=0.674 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHhH
Q 032058 125 VNYGFIIMFPLLLISTWLL 143 (148)
Q Consensus 125 v~ygl~~m~~ll~~~~wls 143 (148)
|.-||..++-.|++-.||-
T Consensus 8 viaglvalltflafgfwlf 26 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLF 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3468888888899999974
No 4
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=10.53 E-value=96 Score=21.90 Aligned_cols=26 Identities=12% Similarity=0.200 Sum_probs=20.6
Q ss_pred ChhhHHHHHhcC--CCCccccccccccc
Q 032058 3 DNPSLSSLFTSY--NPTLLMSTTYYRTD 28 (148)
Q Consensus 3 S~aTL~dLF~Sy--~~~~~~St~GvRtD 28 (148)
...||+||.+.. .|+.-++.|++++.
T Consensus 13 ~~~TL~~lid~L~~~p~~qlk~PSltt~ 40 (98)
T 1y8x_B 13 PSAKLQEVLDYLTNSASLQMKSPAITAT 40 (98)
T ss_dssp TTCBHHHHHHHHHHCTTCCCSSCEEEEE
T ss_pred CchhHHHHHHHHHhChHhhccCCeeeee
Confidence 467999998866 56778999999554
No 5
>2l14_B Cellular tumor antigen P53; CBP, TAD, protein binding; NMR {Homo sapiens}
Probab=9.21 E-value=1.3e+02 Score=19.51 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=18.3
Q ss_pred CChhhHHHHHhcCCCCcccccc
Q 032058 2 YDNPSLSSLFTSYNPTLLMSTT 23 (148)
Q Consensus 2 ~S~aTL~dLF~Sy~~~~~~St~ 23 (148)
-|+.|..||++-.++..+.|.-
T Consensus 2 LSQETFSdLWkLLP~nnvls~~ 23 (49)
T 2l14_B 2 LSQETFSDLWKLLPENNVLSPL 23 (49)
T ss_dssp CCTTSHHHHHHHSSTTCCCSSS
T ss_pred ccHHHHHHHHHhCCcccccccc
Confidence 3889999999999988776654
No 6
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=9.06 E-value=1.6e+02 Score=18.11 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=17.9
Q ss_pred CChhhHHHHHhcCCCCccccc
Q 032058 2 YDNPSLSSLFTSYNPTLLMST 22 (148)
Q Consensus 2 ~S~aTL~dLF~Sy~~~~~~St 22 (148)
-|+.|..||.+-.++..+.|-
T Consensus 14 LSQETFsdLW~LLP~~~ilsp 34 (39)
T 2k8f_B 14 LSQETFSDLWKLLPENNVLSP 34 (39)
T ss_dssp CSCHHHHHHHHTCSSSCCCCC
T ss_pred ccHHHHHHHHHhCCccccccc
Confidence 488999999999999888763
No 7
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=9.02 E-value=18 Score=23.92 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=12.9
Q ss_pred CCCccccccCCccceE
Q 032058 34 LEEVPMTNFFGSVMET 49 (148)
Q Consensus 34 l~~V~ITDFFGSV~~V 49 (148)
+.+|+=+|||.+||.|
T Consensus 33 Lq~VLqSdF~~aVREV 48 (53)
T 1zl8_A 33 LQQVLQSEFFGAVREV 48 (53)
T ss_dssp HHHHHSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3478889999999875
No 8
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=8.30 E-value=74 Score=22.21 Aligned_cols=26 Identities=8% Similarity=-0.052 Sum_probs=16.8
Q ss_pred CChhhHHHHHhcCCCCcccccccccc
Q 032058 2 YDNPSLSSLFTSYNPTLLMSTTYYRT 27 (148)
Q Consensus 2 ~S~aTL~dLF~Sy~~~~~~St~GvRt 27 (148)
.+.+.|.++|++|-.+-+.-...++.
T Consensus 8 ~~~~~mSelFe~YE~df~~l~~~i~~ 33 (102)
T 2qyw_A 8 AASAASSEHFEKLHEIFRGLLEDLQG 33 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888887666555554443
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=6.46 E-value=4.7e+02 Score=18.70 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=8.0
Q ss_pred CCcccCCccchhcccc
Q 032058 86 SNVQDQTSDTKIEDKQ 101 (148)
Q Consensus 86 s~~~~~~~~~~~e~~~ 101 (148)
+...+..+++..+++.
T Consensus 64 d~L~~KTe~L~~~S~~ 79 (119)
T 2kog_A 64 SELDDRADALQAGASQ 79 (119)
T ss_dssp CCCCSCCSCCCSSSHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554444
No 10
>2kyj_A LITX; scorpion toxin, insect toxin, disulfide-directed hairpin, to; NMR {Liocheles australasiae} PDB: 2lds_A
Probab=6.23 E-value=1.7e+02 Score=17.71 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=6.7
Q ss_pred ccccccCCc
Q 032058 37 VPMTNFFGS 45 (148)
Q Consensus 37 V~ITDFFGS 45 (148)
.+++||+||
T Consensus 2 ~pls~~y~s 10 (36)
T 2kyj_A 2 FPLSKEYES 10 (36)
T ss_dssp CCEECSSCB
T ss_pred Cchhhhhhh
Confidence 467888886
Done!