Query 032058
Match_columns 148
No_of_seqs 107 out of 149
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 14:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032058.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032058hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 10.0 7.2 0.00052 24.0 -2.9 16 34-49 30-45 (50)
2 d1y8xb1 c.111.1.2 (B:349-440) 9.3 32 0.0023 22.9 0.0 54 3-56 9-82 (92)
3 d1xmec1 f.23.9.1 (C:2-34) Bact 9.2 1.3E+02 0.0093 16.5 2.7 20 127-146 8-27 (33)
4 d1y74a1 a.194.1.1 (A:17-73) Li 7.9 8.4 0.00061 24.2 -3.3 16 34-49 31-46 (57)
5 d1d1ta2 c.2.1.1 (A:163-338) Al 6.6 37 0.0027 23.0 -0.7 37 102-139 12-48 (176)
6 d1xx6a1 c.37.1.24 (A:2-142) Th 6.4 76 0.0056 21.4 1.0 29 97-129 87-115 (141)
7 d1p1xa_ c.1.10.1 (A:) Deoxyrib 5.0 50 0.0036 24.8 -0.9 28 104-131 76-111 (250)
8 d1oxda_ d.22.1.1 (A:) Green fl 4.7 1E+02 0.0075 23.2 0.8 29 14-44 55-83 (227)
9 d1q90n_ f.23.27.1 (N:) PetN su 4.7 2.9E+02 0.021 14.7 2.6 20 124-145 5-24 (31)
10 d1v3ya_ d.167.1.1 (A:) Peptide 4.7 83 0.006 22.0 0.2 38 16-53 99-137 (182)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=9.99 E-value=7.2 Score=23.98 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=13.1
Q ss_pred CCCccccccCCccceE
Q 032058 34 LEEVPMTNFFGSVMET 49 (148)
Q Consensus 34 l~~V~ITDFFGSV~~V 49 (148)
+.+|+-+|||.+||.|
T Consensus 30 LqkVLqSdF~~avREV 45 (50)
T d1zl8a1 30 LQQVLQSEFFGAVREV 45 (50)
T ss_dssp HHHHHSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3478889999999875
No 2
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.28 E-value=32 Score=22.89 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=34.4
Q ss_pred ChhhHHHHHhcC--CCCccccccccccc-------cCCCCCC----------Ccccccc-CCccceEEecCCcc
Q 032058 3 DNPSLSSLFTSY--NPTLLMSTTYYRTD-------LYQRKLE----------EVPMTNF-FGSVMETIHTDSAY 56 (148)
Q Consensus 3 S~aTL~dLF~Sy--~~~~~~St~GvRtD-------Lf~R~l~----------~V~ITDF-FGSV~~Vel~~s~~ 56 (148)
.+.||+||.+.. +++.-++.|++|+. ||-|.|. .-.+.|- .-.-+.+-+++.++
T Consensus 9 ~~~TL~~li~~L~e~p~~qlk~Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLgl~dG~ei~VtD~t~ 82 (92)
T d1y8xb1 9 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTT 82 (92)
T ss_dssp TTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTTC
T ss_pred CCCcHHHHHHHHhhChHhhccCCceeeecCCCccEEEecCcHHHHHHhhhccccCHHHhCCcCCCEEEEecCCC
Confidence 467999999865 35688899999884 7766652 2344554 33445555555443
No 3
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=9.24 E-value=1.3e+02 Score=16.48 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHhHhhh
Q 032058 127 YGFIIMFPLLLISTWLLLIF 146 (148)
Q Consensus 127 ygl~~m~~ll~~~~wls~~~ 146 (148)
+|.+..+-|.+..-|++.+-
T Consensus 8 l~vi~il~l~ilvfw~gv~a 27 (33)
T d1xmec1 8 LAVILVLTLTILVFWLGVYA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777987653
No 4
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.88 E-value=8.4 Score=24.21 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.0
Q ss_pred CCCccccccCCccceE
Q 032058 34 LEEVPMTNFFGSVMET 49 (148)
Q Consensus 34 l~~V~ITDFFGSV~~V 49 (148)
+.+|+-+|||.+||.|
T Consensus 31 LqkVLqSdF~~avREV 46 (57)
T d1y74a1 31 LQRVLQSRFCSAIREV 46 (57)
T ss_dssp HHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3478889999999876
No 5
>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}
Probab=6.56 E-value=37 Score=23.02 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=27.9
Q ss_pred CCchhhHHHHHHHHhhhcCcchhhhhHHHHHHHHHHHH
Q 032058 102 CPFTRRWNAFQDKLEKIERIDSLVNYGFIIMFPLLLIS 139 (148)
Q Consensus 102 ~~~~~~w~~~~~~~~~~~~~d~~v~ygl~~m~~ll~~~ 139 (148)
|.+.-.|+++..+.+ ++.=|+|+-+|.+.++.+.+..
T Consensus 12 Ca~~T~~~Av~~~~~-~~~g~tVlI~G~GgvGl~ai~~ 48 (176)
T d1d1ta2 12 CGFSTGYGAAVKTGK-VKPGSTCVVFGLGGVGLSVIMG 48 (176)
T ss_dssp THHHHHHHHHHTTSC-CCTTCEEEEECCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhC-CCCCCEEEEECCCchhHHHHHH
Confidence 888999999865443 7778888889988887655443
No 6
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=6.43 E-value=76 Score=21.37 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=20.0
Q ss_pred hccccCCchhhHHHHHHHHhhhcCcchhhhhHH
Q 032058 97 IEDKQCPFTRRWNAFQDKLEKIERIDSLVNYGF 129 (148)
Q Consensus 97 ~e~~~~~~~~~w~~~~~~~~~~~~~d~~v~ygl 129 (148)
-|+|. |+....++..++..- +.+ |++|||
T Consensus 87 DE~QF--f~d~~~~~~~~l~~~-g~~-Viv~GL 115 (141)
T d1xx6a1 87 DEVQF--FDDEIVEIVNKIAES-GRR-VICAGL 115 (141)
T ss_dssp CSGGG--SCTHHHHHHHHHHHT-TCE-EEEEEC
T ss_pred eehhh--ccccHHHHHHhheeC-CcE-EEEEEe
Confidence 58999 666666677777654 454 666987
No 7
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}
Probab=5.01 E-value=50 Score=24.84 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=21.4
Q ss_pred chhhHHHHHHHHhhhc--------CcchhhhhHHHH
Q 032058 104 FTRRWNAFQDKLEKIE--------RIDSLVNYGFII 131 (148)
Q Consensus 104 ~~~~w~~~~~~~~~~~--------~~d~~v~ygl~~ 131 (148)
|.++......|+.+.+ .+|+|+|||.+-
T Consensus 76 FP~G~~~~e~K~~E~~~Ai~~GAdEID~Vin~~~l~ 111 (250)
T d1p1xa_ 76 FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALM 111 (250)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHH
T ss_pred cCCCCccHhHHHHHHHHHHHcCCCeEEEeecchhhc
Confidence 7777777777776664 479999999864
No 8
>d1oxda_ d.22.1.1 (A:) Green fluorescent protein, GFP {Jellyfish (Aequorea victoria) [TaxId: 6100]}
Probab=4.74 E-value=1e+02 Score=23.25 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=22.9
Q ss_pred CCCCccccccccccccCCCCCCCccccccCC
Q 032058 14 YNPTLLMSTTYYRTDLYQRKLEEVPMTNFFG 44 (148)
Q Consensus 14 y~~~~~~St~GvRtDLf~R~l~~V~ITDFFG 44 (148)
+++..+..+.++| -|.+-|+..+.+|||=
T Consensus 55 fs~~il~~~~~y~--~f~~yP~~i~~~DyFK 83 (227)
T d1oxda_ 55 VPWPTLVTTLXVQ--CFSRYPDHMKRHDFFK 83 (227)
T ss_dssp SCGGGGTTTC-CG--GGCBCCGGGGGGCHHH
T ss_pred CCHHHhhhhhhhh--heeeCCCCCCccChhH
Confidence 4566777788888 5999999999999994
No 9
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.72 E-value=2.9e+02 Score=14.75 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHHHHHHHhHhh
Q 032058 124 LVNYGFIIMFPLLLISTWLLLI 145 (148)
Q Consensus 124 ~v~ygl~~m~~ll~~~~wls~~ 145 (148)
+||.+.+.. ...+|..||++
T Consensus 5 iv~~awaa~--~atfsfslslv 24 (31)
T d1q90n_ 5 IVQIGWAAT--CVMFSFSLSLV 24 (31)
T ss_dssp HHHHHHHHH--HHHHHHHHHHH
T ss_pred EEEhHHHHH--HHhheeeEEEE
Confidence 456665544 45555556654
No 10
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus [TaxId: 274]}
Probab=4.72 E-value=83 Score=21.97 Aligned_cols=38 Identities=11% Similarity=-0.127 Sum_probs=28.0
Q ss_pred CCccccccccccccCCCCCC-CccccccCCccceEEecC
Q 032058 16 PTLLMSTTYYRTDLYQRKLE-EVPMTNFFGSVMETIHTD 53 (148)
Q Consensus 16 ~~~~~St~GvRtDLf~R~l~-~V~ITDFFGSV~~Vel~~ 53 (148)
.+-|.|-||.+...-+|+.. .|...|--|.....+++.
T Consensus 99 ~EGCLS~Pg~~~~~V~R~~~I~v~y~d~~G~~~~~~~~G 137 (182)
T d1v3ya_ 99 TEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEG 137 (182)
T ss_dssp EECCTTSTTCCEEEEEECSEEEEEEECTTSCEEEEEEEH
T ss_pred cccccCCCCceeeEEecCCEEEEEEEecCCCEEEEEEEc
Confidence 47899999987644445433 677799999988888753
Done!