BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032060
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 262 bits (669), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 119/148 (80%), Positives = 127/148 (85%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSI LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAMG 148
PEIA +YKTDR KY AR WTQKYAMG
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAMG 150
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 257 bits (657), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 117/147 (79%), Positives = 130/147 (88%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL+DLQ+DPP CSAGPV +D+FHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 6 MALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDY 65
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLV
Sbjct: 66 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 125
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
P+IAH+YK+D+ KY AR WTQKYAM
Sbjct: 126 PDIAHIYKSDKEKYNRLAREWTQKYAM 152
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 257 bits (656), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 115/146 (78%), Positives = 135/146 (92%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
+SKRI KEL DL++DPPTSCSAGPV +D++HWQA+IMGP DSPYAGGVF ++IHFP DYP
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPK++F TK++HPNIN+NG+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVP
Sbjct: 63 FKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVP 122
Query: 122 EIAHMYKTDRSKYETTARSWTQKYAM 147
EIAH+YKTDR KYE TAR WT+KYA+
Sbjct: 123 EIAHIYKTDRPKYEATAREWTKKYAV 148
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 256 bits (653), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 119/147 (80%), Positives = 127/147 (86%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 6 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 65
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 66 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 125
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 126 PEIARIYKTDREKYNRIAREWTQKYAM 152
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 256 bits (653), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 119/147 (80%), Positives = 127/147 (86%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 256 bits (653), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 117/147 (79%), Positives = 129/147 (87%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL+DL +DPP CSAGPV +D+FHWQATIMGPP+SPY GGVF +TIHFP DY
Sbjct: 4 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR +Y AR WTQKYAM
Sbjct: 124 PEIARIYKTDRERYNQLAREWTQKYAM 150
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 256 bits (653), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 119/147 (80%), Positives = 127/147 (86%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 256 bits (653), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 119/147 (80%), Positives = 127/147 (86%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 79 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 138
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 139 PEIARIYKTDREKYNRIAREWTQKYAM 165
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 255 bits (652), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 119/147 (80%), Positives = 127/147 (86%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 121 PEIARIYKTDREKYNRIAREWTQKYAM 147
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 255 bits (652), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 117/147 (79%), Positives = 133/147 (90%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI +EL DL KDPP+S SAGPV +D+FHWQATIMGP DSPYAGGVF ++IHFP DY
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSI SLLTDPNPDDPLV
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLV 120
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIAH+YKTDRS+YE +AR WT+KYA+
Sbjct: 121 PEIAHVYKTDRSRYELSAREWTRKYAI 147
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 255 bits (651), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 118/147 (80%), Positives = 127/147 (86%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 11 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 70
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 71 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 130
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +Y+TDR KY AR WTQKYAM
Sbjct: 131 PEIARIYQTDREKYNRIAREWTQKYAM 157
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 254 bits (650), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 118/147 (80%), Positives = 127/147 (86%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 11 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 70
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 71 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 130
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY +R WTQKYAM
Sbjct: 131 PEIARIYKTDRDKYNRISREWTQKYAM 157
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 254 bits (649), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 118/147 (80%), Positives = 126/147 (85%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QW PALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 254 bits (648), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 118/147 (80%), Positives = 126/147 (85%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLD L+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 254 bits (648), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 118/147 (80%), Positives = 126/147 (85%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQAT MGP DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 253 bits (647), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 118/147 (80%), Positives = 127/147 (86%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 68
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 69 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 128
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY +R WTQKYAM
Sbjct: 129 PEIARIYKTDRDKYNRISREWTQKYAM 155
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 252 bits (644), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 118/147 (80%), Positives = 126/147 (85%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 4 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSI LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 124 PEIARIYKTDREKYNRIAREWTQKYAM 150
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 252 bits (644), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 117/146 (80%), Positives = 126/146 (86%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
A KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 122 EIAHMYKTDRSKYETTARSWTQKYAM 147
EIA +YKTDR KY +R WTQKYAM
Sbjct: 124 EIARIYKTDRDKYNRISREWTQKYAM 149
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 252 bits (644), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 116/145 (80%), Positives = 129/145 (88%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
A KRI KEL DL KDPPT+CSAGPV +DMFHWQATIMGP DSPY+GGVF + IHFP DYP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKV F TK++HPNINS G+ICLDILK+QWSPALTISKVLLSI SLLTDPNPDDPLVP
Sbjct: 82 FKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVP 141
Query: 122 EIAHMYKTDRSKYETTARSWTQKYA 146
EIAH+YK+DR +Y+ TAR W+QKYA
Sbjct: 142 EIAHLYKSDRMRYDQTAREWSQKYA 166
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 252 bits (643), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 118/147 (80%), Positives = 126/147 (85%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSI LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 79 PFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 138
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 139 PEIARIYKTDREKYNRIAREWTQKYAM 165
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 252 bits (643), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 117/146 (80%), Positives = 126/146 (86%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
A KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 120
Query: 122 EIAHMYKTDRSKYETTARSWTQKYAM 147
EIA +YKTDR KY +R WTQKYAM
Sbjct: 121 EIARIYKTDRDKYNRISREWTQKYAM 146
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 252 bits (643), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 114/147 (77%), Positives = 128/147 (87%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DLQ+DPP CSAGPV +D+FHWQATIMGPPDS Y GGVF +T+HFP DY
Sbjct: 7 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLV
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 126
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
P+IA +YK+D+ KY AR WTQKYAM
Sbjct: 127 PDIAQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 252 bits (643), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 114/147 (77%), Positives = 128/147 (87%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DLQ+DPP CSAGPV +D+FHWQATIMGPPDS Y GGVF +T+HFP DY
Sbjct: 3 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
P+IA +YK+D+ KY AR WTQKYAM
Sbjct: 123 PDIAQIYKSDKEKYNRHAREWTQKYAM 149
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 251 bits (642), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 114/147 (77%), Positives = 128/147 (87%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DLQ+DPP CSAGPV +D+FHWQATIMGPPDS Y GGVF +T+HFP DY
Sbjct: 19 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 78
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLV
Sbjct: 79 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 138
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
P+IA +YK+D+ KY AR WTQKYAM
Sbjct: 139 PDIAQIYKSDKEKYNRHAREWTQKYAM 165
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 251 bits (640), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 117/147 (79%), Positives = 126/147 (85%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNGSI LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY +R WTQKYAM
Sbjct: 121 PEIARIYKTDRDKYNRISREWTQKYAM 147
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 250 bits (639), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 117/146 (80%), Positives = 125/146 (85%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
ASKRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKVAF T+++HPNINSNGSI LDIL+ QWSPAL ISKVLLSICSLL DPNPDDPLVP
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVP 120
Query: 122 EIAHMYKTDRSKYETTARSWTQKYAM 147
EIA +YKTDR KY AR WTQKYAM
Sbjct: 121 EIARIYKTDREKYNRIAREWTQKYAM 146
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 248 bits (632), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 124/147 (84%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP C AGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HP INSNGSI LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
PEIA +YKTDR KY AR WTQKYAM
Sbjct: 121 PEIARIYKTDREKYNRIAREWTQKYAM 147
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 246 bits (628), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 112/147 (76%), Positives = 126/147 (85%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DLQ+DPP C AGPV +D+FHWQATIMGPPDS Y GGVF +T+HFP DY
Sbjct: 7 MALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPK+AF TK++HPNINSNGSI LDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLV
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 126
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAM 147
P+IA +YK+D+ KY AR WTQKYAM
Sbjct: 127 PDIAQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 218 bits (555), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 96/146 (65%), Positives = 121/146 (82%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
MA +RI KEL+++Q+DPP +CSAGPV +D+FHW ATI GP DSPY GG+F + +HFP DY
Sbjct: 4 MAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFK P+V F TKV+HPNIN NG ICLDILK+QWSPALT+S+VLLSI SLLTDPNP DPL
Sbjct: 64 PFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLD 123
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYA 146
PE+A++ + ++ ++E TAR WT+ YA
Sbjct: 124 PEVANVLRANKKQFEDTAREWTRMYA 149
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 201 bits (511), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 115/145 (79%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
++KRI KEL D+ DPP +CSAGP ++++ W++TI+GPP S Y GGVF + I F P+YP
Sbjct: 49 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYP 108
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct: 109 FKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVG 168
Query: 122 EIAHMYKTDRSKYETTARSWTQKYA 146
IA Y T+R++++ AR WT++YA
Sbjct: 169 SIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 199 bits (507), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 115/145 (79%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
++KRI KEL ++ DPP +CSAGP ++++ W++TI+GPP S Y GGVF + I F PDYP
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct: 64 FKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVG 123
Query: 122 EIAHMYKTDRSKYETTARSWTQKYA 146
IA Y T+R++++ AR WT++YA
Sbjct: 124 SIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKP 64
R+ KELKD++ + A + F W I GP +PY GG F + I P DYP+ P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 65 PKVAFRTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PK+ F TK++HPNI+S G+ICLD+LK +WSPALTI LLSI +LL+DP PDDP E+
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEV 146
Query: 124 AHMYKTDRSKYETTARSWTQKYAMG 148
A MYK + + + TA WT+ +A G
Sbjct: 147 AKMYKENHALFVKTASVWTKTFATG 171
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 146 bits (369), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 95/145 (65%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 66 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
Query: 124 AHMYKTDRSKYETTARSWTQKYAMG 148
A +KT+ ++ TAR+WT+ YAM
Sbjct: 126 AEQWKTNEAQAIETARAWTRLYAMN 150
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 146 bits (369), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 95/145 (65%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 68 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 127
Query: 124 AHMYKTDRSKYETTARSWTQKYAMG 148
A +KT+ ++ TAR+WT+ YAM
Sbjct: 128 AEQWKTNEAQAIETARAWTRLYAMN 152
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 95/145 (65%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 69 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 128
Query: 124 AHMYKTDRSKYETTARSWTQKYAMG 148
A +KT+ ++ TAR+WT+ YAM
Sbjct: 129 AEQWKTNEAQAIETARAWTRLYAMN 153
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 93/143 (65%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFK 63
+RI KE ++L +PP A PV E+ H+ I GP +PY GG + + + P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PPKV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ P PDDPL ++
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123
Query: 124 AHMYKTDRSKYETTARSWTQKYA 146
A +K D++ E AR W + YA
Sbjct: 124 AEHFKQDKNDAEHVARQWNKIYA 146
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 146 bits (368), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 95/145 (65%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 123
Query: 124 AHMYKTDRSKYETTARSWTQKYAMG 148
A +KT+ ++ TAR+WT+ YAM
Sbjct: 124 AEQWKTNEAQAIETARAWTRLYAMN 148
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 146 bits (368), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 93/143 (65%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFK 63
+RI KE ++L +PP A PV E+ H+ I GP +PY GG + + + P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PPKV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ P PDDPL ++
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123
Query: 124 AHMYKTDRSKYETTARSWTQKYA 146
A +K D++ E AR W + YA
Sbjct: 124 AEHFKQDKNDAEHVARQWNKIYA 146
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 146 bits (368), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 95/145 (65%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 71 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 130
Query: 124 AHMYKTDRSKYETTARSWTQKYAMG 148
A +KT+ ++ TAR+WT+ YAM
Sbjct: 131 AEQWKTNEAQAIETARAWTRLYAMN 155
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 145 bits (367), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 97/146 (66%), Gaps = 2/146 (1%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
+KRI+KE++ ++ DP + V+E D+ H + T +GPP +PY GG F+V I P +YP
Sbjct: 4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 63
Query: 62 FKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
FKPPK+ F TKV+HPNI+S G+ICLDIL+ WSP +T+ L+S+ +LL P P+DP
Sbjct: 64 FKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQD 123
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYA 146
E+A Y DR + TA WT+ YA
Sbjct: 124 AEVAQHYLRDRESFNKTAALWTRLYA 149
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 145 bits (366), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 97/146 (66%), Gaps = 2/146 (1%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
+KRI+KE++ ++ DP + V+E D+ H + T +GPP +PY GG F+V I P +YP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 62 FKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
FKPPK+ F TKV+HPNI+S G+ICLDILK WSP +T+ L+S+ +LL P P+DP
Sbjct: 63 FKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQD 122
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYA 146
E+A Y DR + TA WT+ YA
Sbjct: 123 AEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 91/146 (62%), Gaps = 5/146 (3%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
A KR++++ K LQ+DPP S P ++ W A I GP D+P+ GG F +++ F DYP
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
KPP V F +++FHPNI ++GSICLDIL+ QWSP ++ +L SI SLL DPNP+ P
Sbjct: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
Query: 122 EIAHMYKTDRSKYETTAR-----SWT 142
E A MY + +Y R SWT
Sbjct: 125 EAARMYSESKREYNRRVRDVVEQSWT 150
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Query: 1 MAS--KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPP 58
MAS KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118
DYP + PKV F TK++HPNI+ G ICLD+LK WSPAL I VLLSI +LL PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 119 LVPEIAHMYKTDRSKYETTARSWTQKYA 146
L ++A + + + AR WT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 92/143 (64%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFK 63
KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P DYP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPNI+ G ICLD+LK WSPAL I VLLSI +LL PNP+DPL ++
Sbjct: 68 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 127
Query: 124 AHMYKTDRSKYETTARSWTQKYA 146
A + + + AR WT+ YA
Sbjct: 128 AEDWIKNEQGAKAKAREWTKLYA 150
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 87/134 (64%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
A +R++++ K LQ+DPP S P ++ W A I GP +P+ G F + I F +YP
Sbjct: 5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYP 64
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
KPP V F +K+FHPN+ ++GSICLDIL+ +WSP +S +L SI SLL +PNP+ P
Sbjct: 65 NKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANS 124
Query: 122 EIAHMYKTDRSKYE 135
+ A +Y+ ++ +YE
Sbjct: 125 QAAQLYQENKREYE 138
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 1 MAS--KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPP 58
MAS KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118
DYP + PKV F TK++HPNI+ G I LD+LK WSPAL I VLLSI +LL PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 119 LVPEIAHMYKTDRSKYETTARSWTQKYA 146
L ++A + + + AR WT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 137 bits (344), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 93/143 (65%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
+ +R++++ K LQ+DPP S P +++ W+A I GP ++P+ G F +++ F +YP
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 64
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
KPP V F +K+FHPN+ ++GSICLDIL+ +WSP ++ +L SI SLL +PNP+ P
Sbjct: 65 NKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANS 124
Query: 122 EIAHMYKTDRSKYETTARSWTQK 144
A +Y+ +R +YE + ++
Sbjct: 125 LAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 90/134 (67%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
+ +R++++ K LQ+DPP S P +++ W+A I GP ++P+ G F +++ F +YP
Sbjct: 8 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 67
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
KPP V F +K+FHPN+ ++GSICLDIL+ +WSP ++ +L SI SLL +PNP+ P
Sbjct: 68 NKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANS 127
Query: 122 EIAHMYKTDRSKYE 135
A +Y+ +R +YE
Sbjct: 128 LAAQLYQENRREYE 141
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 1 MAS--KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPP 58
MAS KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118
DYP + PKV F TK++HP I+ G I LD+LK WSPAL I VLLSI +LL PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 119 LVPEIAHMYKTDRSKYETTARSWTQKYA 146
L ++A + + + AR WT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 95/156 (60%), Gaps = 14/156 (8%)
Query: 5 RILKELKDLQK-------DPPTS------CSAGPVAEDMFHWQATIMGPPDSPYAGGVFL 51
R+LKEL D+Q+ +P + SA V D+ W+ I GP +PY GG F
Sbjct: 36 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 95
Query: 52 VTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLL 110
+ I PPDYP+ PPK+ F TK++HPNI+S G+ICLDILK +WSPALTI LLSI ++L
Sbjct: 96 LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML 155
Query: 111 TDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
DP P DP E+A M + + TA+ WT+ +A
Sbjct: 156 ADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 133 bits (334), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 92/145 (63%), Gaps = 5/145 (3%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
A +R++++ K +++D P SA P+ +++ W A I+GP D+PY G F + + F +YP
Sbjct: 5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
KPP V F +++FHPN+ +NG ICLDIL+ +W+P ++ +L SI SL DPNP P
Sbjct: 65 NKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANV 124
Query: 122 EIAHMYKTDRSKY-----ETTARSW 141
E A ++K +S+Y ET +SW
Sbjct: 125 EAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 122 bits (306), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 92/147 (62%), Gaps = 3/147 (2%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
AS+R++KEL++++K + V E ++ WQ I+ P + PY G F + I+FP +Y
Sbjct: 5 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPL 119
PFKPPK+ F+TK++HPNI+ G +CL ++ E W PA +V+ S+ +L+ DP P+ PL
Sbjct: 64 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 123
Query: 120 VPEIAHMYKTDRSKYETTARSWTQKYA 146
++A Y DR K+ A +T+KY
Sbjct: 124 RADLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 122 bits (306), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 92/147 (62%), Gaps = 3/147 (2%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
AS+R++KEL++++K + V E ++ WQ I+ P + PY G F + I+FP +Y
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 61
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPL 119
PFKPPK+ F+TK++HPNI+ G +CL ++ E W PA +V+ S+ +L+ DP P+ PL
Sbjct: 62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 121
Query: 120 VPEIAHMYKTDRSKYETTARSWTQKYA 146
++A Y DR K+ A +T+KY
Sbjct: 122 RADLAEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 122 bits (305), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 92/148 (62%), Gaps = 4/148 (2%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPF 62
+ R+ +EL L +PP + + M +A I+G ++PY GVF + + P YPF
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 63 KPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDP 118
+PP++ F T ++HPNI+S G ICLD+L K W P+L I+ VL SI L+++PNPDDP
Sbjct: 66 EPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDP 125
Query: 119 LVPEIAHMYKTDRSKYETTARSWTQKYA 146
L+ +I+ +K ++ + AR WT+K+A
Sbjct: 126 LMADISSEFKYNKPAFLKNARQWTEKHA 153
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 14/152 (9%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
A KR+LKEL+ L KD P AGP +E+ +F W I GPPD+PYA GVF + FP DY
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSIC 107
P PPK+ F + HPNI NG +C+ IL +E+WSP ++ K+LLS+
Sbjct: 65 PLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVM 124
Query: 108 SLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 139
S+L++PN + + +++ +R ++E +
Sbjct: 125 SMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 14/157 (8%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 10 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K+LLS+
Sbjct: 70 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 129
Query: 108 SLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQK 144
S+L +PN + + + M++ DR ++ A+ QK
Sbjct: 130 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 166
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 14/157 (8%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 7 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 66
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K+LLS+
Sbjct: 67 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 126
Query: 108 SLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQK 144
S+L +PN + + + M++ DR ++ A+ QK
Sbjct: 127 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 163
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 14/157 (8%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K+LLS+
Sbjct: 64 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 123
Query: 108 SLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQK 144
S+L +PN + + + M++ DR ++ A+ QK
Sbjct: 124 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 14/157 (8%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 8 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 67
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K+LLS+
Sbjct: 68 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 127
Query: 108 SLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQK 144
S+L +PN + + + M++ DR ++ A+ QK
Sbjct: 128 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 164
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 119 bits (297), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFP 57
+A +RI +E K++ K TS V E+ + I GPPD+PY GG + + I P
Sbjct: 21 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 80
Query: 58 PDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116
YPF PPKV F TK++HPNI+S G+ICLDILK+QW+ A+T+ VLLS+ +LL PD
Sbjct: 81 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 140
Query: 117 DPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
DP +A+ YK + ++ TAR W YA
Sbjct: 141 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 170
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 119 bits (297), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFP 57
+A +RI +E K++ K TS V E+ + I GPPD+PY GG + + I P
Sbjct: 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 64
Query: 58 PDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116
YPF PPKV F TK++HPNI+S G+ICLDILK+QW+ A+T+ VLLS+ +LL PD
Sbjct: 65 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 124
Query: 117 DPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
DP +A+ YK + ++ TAR W YA
Sbjct: 125 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 154
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 119 bits (297), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFP 57
+A +RI +E K++ K TS V E+ + I GPPD+PY GG + + I P
Sbjct: 57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 116
Query: 58 PDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116
YPF PPKV F TK++HPNI+S G+ICLDILK+QW+ A+T+ VLLS+ +LL PD
Sbjct: 117 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 176
Query: 117 DPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
DP +A+ YK + ++ TAR W YA
Sbjct: 177 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 206
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 118 bits (296), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFP 57
+A +RI +E K++ K TS V E+ + I GPPD+PY GG + + I P
Sbjct: 6 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 65
Query: 58 PDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116
YPF PPKV F TK++HPNI+S G+ICLDILK+QW+ A+T+ VLLS+ +LL PD
Sbjct: 66 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 125
Query: 117 DPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
DP +A+ YK + ++ TAR W YA
Sbjct: 126 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 155
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFP 57
+A +RI +E K++ K TS V E+ + I GPPD+PY GG + + I P
Sbjct: 8 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 67
Query: 58 PDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116
YPF PPKV F TK++HPNI+S G+ICLDILK+QW+ A+T+ VLLS+ +LL PD
Sbjct: 68 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 127
Query: 117 DPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
DP +A+ YK + ++ TAR W YA
Sbjct: 128 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 157
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 79/143 (55%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFK 63
+ + KE+ L DPP P ED+ Q TI GP +PYAGG+F + + D+P
Sbjct: 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PPK F TK+FHPN+ +NG IC+++LK W+ L I VLL+I LL PNP+ L E
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
Query: 124 AHMYKTDRSKYETTARSWTQKYA 146
+ + +Y AR T+ +
Sbjct: 136 GRLLLENYEEYAARARLLTEIHG 158
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 87/145 (60%), Gaps = 14/145 (9%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
S + ++L +L K+P SAG + + D++ W+ I+GPPD+ Y GGVF + FP DY
Sbjct: 18 GSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDY 77
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSIC 107
P +PPK+ F T+++HPN++ NG +C+ IL +E+W P T+ +++S+
Sbjct: 78 PLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVI 137
Query: 108 SLLTDPNPDDPLVPEIAHMYKTDRS 132
S+L DPN D P + A ++ DR+
Sbjct: 138 SMLADPNGDSPANVDAAKEWREDRN 162
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
SKR+ +EL+ L +A P +++F W AT+ GP D+ Y + +T+ FP DYP
Sbjct: 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYP 69
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
+KPP V F T +HPN++ +G+ICLDILKE W+ + + +LLS+ SLL +PN PL
Sbjct: 70 YKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNA 129
Query: 122 EIAHMYKTDRSKYE 135
+ A M+ +++++Y+
Sbjct: 130 QAADMW-SNQTEYK 142
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 87/142 (61%), Gaps = 14/142 (9%)
Query: 8 KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPK 66
K+L D+++ P SAG V + D++ W+ ++GPPD+ Y GG F + FP DYP KPPK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 67 VAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDP 113
+ F ++++HPNI+ G++C+ IL +E+W P T+ +LLS+ S+LTDP
Sbjct: 70 MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDP 129
Query: 114 NPDDPLVPEIAHMYKTDRSKYE 135
N + P + A M + + ++++
Sbjct: 130 NFESPANVDAAKMQRENYAEFK 151
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+ R+ +E K ++D P A P D+ +W+ I G P + + GG++ +T+
Sbjct: 10 LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMA 69
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDP 113
FP +YP +PPK F +FHPN+ +G++CL IL E+ W PA+TI ++LL I LL DP
Sbjct: 70 FPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDP 129
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N P E M+K D+ +YE R+ ++ A
Sbjct: 130 NIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI ++LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DP E +Y +R +YE R+ +K+A
Sbjct: 127 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 5 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 64
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI ++LL I LL +P
Sbjct: 65 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 124
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DP E +Y +R +YE R+ +K+A
Sbjct: 125 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 6 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 65
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI ++LL I LL +P
Sbjct: 66 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 125
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DP E +Y +R +YE R+ +K+A
Sbjct: 126 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI ++LL I LL +P
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DP E +Y +R +YE R+ +K+A
Sbjct: 124 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI ++LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DP E +Y +R +YE R+ +K+A
Sbjct: 127 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 6 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 65
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI ++LL I LL +P
Sbjct: 66 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 125
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DP E +Y +R +YE R+ +K+A
Sbjct: 126 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 9 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 68
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI ++LL I LL +P
Sbjct: 69 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 128
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DP E +Y +R +YE R+ +K+A
Sbjct: 129 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI ++LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N P E +Y +R +YE R+ +K+A
Sbjct: 127 NIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHP + +G++CL IL+E W PA+TI ++LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DP E +Y +R +YE R+ +K+A
Sbjct: 127 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI ++LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N P E +Y +R +YE R+ +K+A
Sbjct: 127 NIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++ L IL+E W PA+TI ++LL I LL +P
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DP E +Y +R +YE R+ +K+A
Sbjct: 124 NIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 14/141 (9%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
+ K +L ELK LQ++P V E D+++W+ I GPP++ Y GG F + FP DY
Sbjct: 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 67
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSIC 107
P+ PP F TK++HPNI G +C+ IL E+W+P + +LLS+
Sbjct: 68 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 127
Query: 108 SLLTDPNPDDPLVPEIAHMYK 128
SLL +PN P + + MY+
Sbjct: 128 SLLNEPNTFSPANVDASVMYR 148
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F +FHPN+ +G++ L IL+E W PA+TI ++LL I LL +P
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DP E +Y +R +YE R+ +K+A
Sbjct: 124 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 14/141 (9%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
+ K +L ELK LQ++P V E D+++W+ I GPP++ Y GG F + FP DY
Sbjct: 5 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 64
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSIC 107
P+ PP F TK++HPNI G +C+ IL E+W+P + +LLS+
Sbjct: 65 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 124
Query: 108 SLLTDPNPDDPLVPEIAHMYK 128
SLL +PN P + + MY+
Sbjct: 125 SLLNEPNTFSPANVDASVMYR 145
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 1 MASKRILKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPD 59
MAS R++KEL+DLQK PP + ++ W A ++ P PY F + I FPP+
Sbjct: 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE 62
Query: 60 YPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDP 118
YPFKPP + F TK++HPN++ NG ICL I+ E W P +VL ++ L+ PN +P
Sbjct: 63 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP 122
Query: 119 LVPEIAHMYKTDRSKYETTARSWTQKYAM 147
L ++A + + + A +T ++ +
Sbjct: 123 LRMDLADLLTQNPELFRKNAEEFTLRFGV 151
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 1 MASKRILKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPD 59
MAS R++KEL+DLQK PP + ++ W A ++ P PY F + I FPP+
Sbjct: 1 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE 59
Query: 60 YPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDP 118
YPFKPP + F TK++HPN++ NG ICL I+ E W P +VL ++ L+ PN +P
Sbjct: 60 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP 119
Query: 119 LVPEIAHMYKTDRSKYETTARSWTQKYAM 147
L ++A + + + A +T ++ +
Sbjct: 120 LRMDLADLLTQNPELFRKNAEEFTLRFGV 148
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPF 62
KR+ +EL L SA P ++++F W TI G + Y + +++ FP YP+
Sbjct: 32 GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91
Query: 63 KPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPE 122
P V F T +HPN+++ G+I LDILKE+WS + +LLSI SLL +PN D PL
Sbjct: 92 NAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 151
Query: 123 IAHMYKT 129
A ++K
Sbjct: 152 AAELWKN 158
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPP 58
+R+ +E K +KD P A PV + D+ W+A I G + +AGGV+ +T+ +P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPD 116
+YP KPPKV F +HPN+ +G+ICL IL E W PA+T+ +++L + LL PNP+
Sbjct: 69 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 128
Query: 117 DPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
P + ++++Y+ ++Y+
Sbjct: 129 SPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 158
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPP 58
+R+ +E K +KD P A PV + D+ W+A I G + +AGGV+ +T+ +P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPD 116
+YP KPPKV F +HPN+ +G+ICL IL E W PA+T+ +++L + LL PNP+
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 126
Query: 117 DPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
P + ++++Y+ ++Y+
Sbjct: 127 SPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 8 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKV 67
++ DL+++ +A PV+EDM W+ I G +S + G VF +TIHF +Y + PP V
Sbjct: 30 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 89
Query: 68 AFRTKVFHPNIN-SNGSICLDILK--EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIA 124
F T FHPN++ G C+D L E+W+ T+S +LL++ +L++P ++P+ E A
Sbjct: 90 KFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAA 149
Query: 125 HMYKTDRSKYETTARSWTQ 143
+ D S Y T R + +
Sbjct: 150 RILVKDESLYRTILRLFNR 168
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 92.8 bits (229), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
A RI K++ +L + P +C +D+ +++ I P + Y G F+ + Y
Sbjct: 7 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
P PPKV T V+HPNI+ G++CL+IL+E W P LTI+ ++ + L +PNP+DPL
Sbjct: 64 PHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLN 123
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAMG 148
E A + + +R +E + + +G
Sbjct: 124 KEAAEVLQNNRRLFEQNVQRSXRGGYIG 151
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 39 GPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPAL 97
GP +PY GGV+ V + P YPFK P + F K+FHPNI+ ++G++CLD++ + W+
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 98 TISKVLLSIC-SLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
++ + S LL PNP DPL + A MY +Y+ + + QKYA
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 30 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDI 88
MFH GP + Y GG++ V + P DYPF P + F K+ HPN++ ++GS+CLD+
Sbjct: 34 MFH------GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDV 87
Query: 89 LKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
+ + W+P ++ V + + LLT PNP DPL + A + D++ YE + + + YA
Sbjct: 88 INQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
A RI K++ +L + P +C +D+ +++ I P + Y G F+ + Y
Sbjct: 27 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGY 83
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
P PPKV T V+HPNI+ G++ L+IL+E W P LTI+ ++ + L +PNP+DPL
Sbjct: 84 PHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLN 143
Query: 121 PEIAHMYKTDRSKYETTARSWTQKYAMG 148
E A + + +R +E + + +G
Sbjct: 144 KEAAEVLQNNRRLFEQNVQRSMRGGYIG 171
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 39 GPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPAL 97
GP +PY G +++ + P DYPFK P + F ++ HPN++ +GS+CLD++ + W+P
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 98 TISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
+ + + + LL PNP DPL + AH+ DR ++ R +A
Sbjct: 106 QLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA 155
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 1 MAS--KRILKELKDLQKDPP--TSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHF 56
MAS KR+ KEL LQ DPP + + V + W + G P + Y G F + F
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 57 PPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 111
YPF P+V F + HP++ SNG ICL IL E WSPAL++ V LSI S+L+
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
+ K ++KE+ +L+ + P +C + H + P + Y GG F P Y
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-P 113
PPKV TK++HPNI G ICL +L+E W+P T+ V+ + SL TD
Sbjct: 74 NMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DDPL E A + D+ + + ++YA
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
+ K ++KE+ +L+ + P +C + H + P + Y GG F P Y
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-P 113
PPKV TK++HPNI G ICL +L+E W+P T+ V+ + SL TD
Sbjct: 74 NMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146
N DDPL E A + D+ + + ++YA
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
A+ RI KEL + K+PP +C+ ++ W +G ++ YA V+ + I FP +YP
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 62 FKPPKVAFRTK-VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 111
KPP V F K H ++ SNG ICL +L + ++P+L+IS ++LSI S+L+
Sbjct: 81 LKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLS 131
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 5 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPPDSPYAGGVFLV 52
RI+KE LK L D P + S P+ E D+ W+A I GP D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 TIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPALTISKVLLSICSL 109
I P YP PPK++F + + H N+ S G ICL+ILK E+W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 110 LTDPNPDDPLVPEIAHMYKT-DRSKYETTAR 139
L +P D PL +I ++ + D S Y+ +
Sbjct: 130 LREPVSDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%)
Query: 36 TIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSP 95
I+ P + Y G + F YP +PPKV K+FHPNI+ G++CL+IL+E WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 96 ALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 139
AL + ++ + L +PNP+DPL + A + ++ R
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 5 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPPDSPYAGGVFLV 52
RI+KE LK L D P + S P+ E D+ W+A I GP D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 TIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPALTISKVLLSICSL 109
I P YP PPK++F + + H N+ S G ICL+ILK E+W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 110 LTDPNPDDPLVPEIAHMYKT-DRSKYETTAR 139
L +P D PL +I ++ + D S Y+ +
Sbjct: 130 LREPVCDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
A+ RI KEL + +PP +C+ ++ W +G ++ YA V+ + I FP DYP
Sbjct: 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 62 FKPPKVAFRTK-VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 111
KPP V F K H ++ SNG ICL +L + ++P+L+IS ++LSI S+L+
Sbjct: 67 LKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 117
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 5 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPPDSPYAGGVFLV 52
RI+KE LK L D P + S P+ E D+ W+A I GP D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 TIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPALTISKVLLSICSL 109
I P YP PPK++F + + H N+ S G ICL+ILK E+W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 110 LTDPNPDDPLVPEIAHMYKT-DRSKYETTAR 139
L +P D PL +I + + D S Y+ +
Sbjct: 130 LREPVCDSPLDVDIGAIIRCGDMSAYQGIVK 160
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYP 61
A++R+ ++ ++KDP A P+ ++ W + GP +PY GG + + FP ++P
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 62 FKPPKVAFRTKVFHPN--INSNGSICLDILK---EQWSPALTISKVLLSICSLLTDPNP 115
FKPP + T PN N +CL I + W+PA ++S +L + S + + P
Sbjct: 75 FKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 37 IMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDIL-- 89
I GP D+PYA G F ++FP DYP PP V T F+PN+ ++G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 90 -----KEQWSPAL-TISKVLLSICSLLTDPNP 115
+E+W+P + +VL+S+ SL+ P
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 5 RILKELKDLQKD-PPTSCSAGPVAED---MFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
R+L+EL+ +K P SCS G D M W TI+GPP S + ++ ++I P+Y
Sbjct: 10 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69
Query: 61 PFKPPKVAFRTKVFHPNIN-SNGSICLDILK-EQWSPALTISKVLLSICSLLTDP 113
P PPKV F +K+ P +N + G + D W A T+ +LL + + P
Sbjct: 70 PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 5 RILKELKDLQKD-PPTSCSAGPVAED---MFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
R+L+EL+ +K P SCS G D M W TI+GPP S + ++ ++I P+Y
Sbjct: 9 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 68
Query: 61 PFKPPKVAFRTKVFHPNIN-SNGSICLDILK-EQWSPALTISKVLLSICSLLTDP 113
P PPKV F +K+ P +N + G + D W A T+ +LL + + P
Sbjct: 69 PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATP 123
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 1 MASKRILKELK------DLQKDPPTSCSAGPVA------EDMFHWQATIMGPPDSPY--A 46
+++KRI+K+LK D + +S S A + +++W + P DS Y A
Sbjct: 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGA 67
Query: 47 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSP---ALTISKVL 103
G + +++ F DYP +PP V F T V+ P + G IC ++ + W+P A + K++
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLV 127
Query: 104 LSICSLLTDPNPDDPLVPEIAH 125
L DD + PE H
Sbjct: 128 LDRVFSQYKSRRDDDVNPEARH 149
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + I P Y
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 61 PFKPPKVAFRTKVFHPNINSNGSI----CLDILKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ +NS+ + + +L +W + +I VL + L+
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + I P Y
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 61 PFKPPKVAFRTKVFHPNINSNGSI----CLDILKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ +NS+ + + +L +W + +I VL + L+
Sbjct: 99 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 3 SKRILKELKDLQK-DPPTSCSAGPVAED---MFHWQATIMGPPDSPYAGGVFLVTIHFPP 58
S R+L EL+ QK + S G + D + +W TI G P + + ++ +TI
Sbjct: 27 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDD 86
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSIC---LDILKEQWSPALTISKVLLSI 106
+YP PP V F TK+ +++ G + L ILK W+ TI +L+S+
Sbjct: 87 NYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISL 136
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 3 SKRILKELKDLQK-DPPTSCSAGPVAED---MFHWQATIMGPPDSPYAGGVFLVTIHFPP 58
S R+L EL+ QK + S G + D + +W TI G P + + ++ +TI
Sbjct: 23 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDD 82
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSIC---LDILKEQWSPALTISKVLLSI 106
+YP PP V F TK+ +++ G + L ILK W+ TI +L+S+
Sbjct: 83 NYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISL 132
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + I P Y
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 61 PFKPPKVAFRTKVFHPNINSNGSI----CLDILKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ +NS+ + + +L +W + +I VL + L+
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 141
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + + P Y
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDI----LKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ IN N S +D + +W + +I VL + L+
Sbjct: 74 PEAPPSVRFVTKINMNGIN-NSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 126
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + + P Y
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDI----LKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ IN N S +D + +W + +I VL + L+
Sbjct: 69 PEAPPSVRFVTKINMNGIN-NSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 121
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + + P Y
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDI----LKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ IN N S +D + +W + +I VL + L+
Sbjct: 68 PEAPPSVRFVTKINMNGIN-NSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 120
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + + P Y
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDI----LKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ IN N S +D + +W + +I VL + L+
Sbjct: 79 PEAPPSVRFVTKINMNGIN-NSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 131
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 2 ASKRILKELKDLQKDPPTSC---SAGPVAEDMFHWQATIMG-PPDSPYAGGV-------- 49
AS R++KEL+D+ + S + + ++ W + PDSP +
Sbjct: 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEG 87
Query: 50 ---FLVTIHFPPDYPFKPPKVAFRTKVFHPN-INSNGSICLDIL-KEQWSPALTISKVLL 104
L+ F ++PF PP V V + G++C+++L K+ WS A +I V++
Sbjct: 88 IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIM 147
Query: 105 SICSLLT 111
I + L
Sbjct: 148 QINATLV 154
>pdb|3R3Q|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain
pdb|3R42|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain In Complex
With A Vps27 Psdp Peptide
Length = 162
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 52 VTIHFPPDYPFKPPKVAFRTKVFHPN-----------INSNGSICLDILKEQWSP-ALTI 99
V + P YP KPP ++ + F N I+SNG I L IL W P A+ +
Sbjct: 85 VIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDPAAMNL 143
Query: 100 SKVLLSICSLLTDPNPD 116
V+ + SLL +P D
Sbjct: 144 IMVVQELMSLLHEPPQD 160
>pdb|3CP3|A Chain A, Crystal Structure Of Conserved Protein Of Unknown
Function Dip1874 From Corynebacterium Diphtheriae
Length = 148
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 54 IHFPPDYPFKPPKVAFR----TKVFHPNINSNGSICLDILK--EQWSPAL 97
++F DY + P+V FR TK+F N+NS+ +D E WS L
Sbjct: 45 VNFVLDYSAEQPRVYFRTAEGTKLFSVNLNSDVLFEVDRFDDAEGWSVVL 94
>pdb|1UZX|A Chain A, A Complex Of The Vps23 Uev With Ubiquitin
Length = 169
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 57 PPDYPFKPPKVAFRTKVFHPN-----------INSNGSICLDILKEQWSP-ALTISKVLL 104
P YP KPP ++ + F N I+SNG I L IL W P A + V+
Sbjct: 96 PSXYPVKPPFISINLENFDXNTISSSLPIQEYIDSNGWIALPIL-HCWDPAAXNLIXVVQ 154
Query: 105 SICSLLTDPNPD 116
+ SLL +P D
Sbjct: 155 ELXSLLHEPPQD 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,323,623
Number of Sequences: 62578
Number of extensions: 217567
Number of successful extensions: 632
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 127
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)