Query 032060
Match_columns 148
No_of_seqs 170 out of 1097
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 4.7E-58 1E-62 320.0 15.5 148 1-148 1-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 7.9E-56 1.7E-60 314.9 17.2 146 2-147 6-152 (153)
3 PLN00172 ubiquitin conjugating 100.0 3.7E-53 8E-58 302.3 18.5 147 1-147 1-147 (147)
4 PTZ00390 ubiquitin-conjugating 100.0 1.2E-52 2.6E-57 301.0 18.5 147 2-148 3-149 (152)
5 KOG0419 Ubiquitin-protein liga 100.0 1.3E-52 2.8E-57 285.6 14.8 144 2-145 5-148 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 6.4E-47 1.4E-51 264.7 15.6 144 2-145 6-163 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 1.8E-46 4E-51 258.9 14.9 148 1-148 4-158 (158)
8 KOG0418 Ubiquitin-protein liga 100.0 2.2E-46 4.9E-51 269.0 14.4 147 2-148 4-154 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 1.2E-45 2.5E-50 261.7 14.7 138 5-142 1-140 (140)
10 KOG0426 Ubiquitin-protein liga 100.0 1.2E-45 2.5E-50 251.8 14.0 146 1-146 4-163 (165)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 2.6E-45 5.5E-50 260.3 16.0 140 3-142 1-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.7E-44 3.6E-49 257.3 17.4 143 4-146 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 1.2E-44 2.6E-49 250.0 11.9 142 3-145 31-172 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 2.9E-41 6.2E-46 232.1 14.0 146 1-147 2-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 1.4E-39 3E-44 230.5 11.9 144 2-148 4-149 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 1E-37 2.3E-42 221.4 12.2 145 2-147 29-175 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 3.3E-38 7.1E-43 224.2 7.9 146 3-148 12-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 2E-33 4.2E-38 191.7 12.1 117 2-119 16-134 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 2.7E-29 5.8E-34 184.3 14.7 111 2-114 6-119 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 2E-25 4.4E-30 164.4 13.7 140 4-144 22-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 1.5E-23 3.3E-28 156.8 9.6 110 2-114 12-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 8.1E-18 1.7E-22 146.4 7.3 109 4-112 854-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 9.5E-16 2.1E-20 133.7 10.6 111 3-113 284-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 1.3E-13 2.8E-18 94.9 8.2 108 5-112 9-123 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.9 9.9E-09 2.1E-13 72.1 7.4 67 46-112 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.8 1.2E-08 2.6E-13 68.6 6.3 92 50-142 13-110 (122)
27 PF08694 UFC1: Ubiquitin-fold 98.7 8.8E-09 1.9E-13 71.9 3.5 95 3-103 26-135 (161)
28 PF05743 UEV: UEV domain; Int 98.6 1.3E-07 2.8E-12 65.5 5.8 78 30-112 32-117 (121)
29 KOG3357 Uncharacterized conser 98.1 7.8E-06 1.7E-10 56.5 4.8 95 3-103 29-138 (167)
30 KOG2391 Vacuolar sorting prote 97.9 4.3E-05 9.2E-10 60.7 7.4 76 38-114 56-139 (365)
31 PF14462 Prok-E2_E: Prokaryoti 97.1 0.0081 1.8E-07 41.5 8.9 90 19-111 12-120 (122)
32 PF05773 RWD: RWD domain; Int 97.1 0.0025 5.5E-08 42.4 6.2 69 4-73 4-74 (113)
33 smart00591 RWD domain in RING 96.6 0.035 7.7E-07 36.5 8.7 26 46-71 39-64 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.4 0.17 3.6E-06 36.7 8.4 62 51-112 56-126 (162)
35 PF09765 WD-3: WD-repeat regio 92.3 0.2 4.4E-06 39.6 4.1 85 4-111 102-187 (291)
36 KOG4018 Uncharacterized conser 86.4 2 4.2E-05 32.5 5.1 62 7-70 8-71 (215)
37 KOG0309 Conserved WD40 repeat- 83.6 5.8 0.00013 35.6 7.3 65 6-72 425-491 (1081)
38 PF06113 BRE: Brain and reprod 79.4 6.8 0.00015 31.7 5.9 68 30-109 53-123 (333)
39 PF14460 Prok-E2_D: Prokaryoti 76.2 4.4 9.6E-05 29.5 3.8 39 71-112 90-131 (175)
40 TIGR03737 PRTRC_B PRTRC system 68.6 7.7 0.00017 29.7 3.7 41 71-115 131-175 (228)
41 smart00340 HALZ homeobox assoc 63.9 6 0.00013 22.1 1.7 14 3-16 21-34 (44)
42 PF06113 BRE: Brain and reprod 59.2 24 0.00052 28.6 5.0 28 47-75 305-332 (333)
43 cd00421 intradiol_dioxygenase 51.8 25 0.00053 24.8 3.6 25 46-70 64-89 (146)
44 KOG4274 Positive cofactor 2 (P 49.4 1.2E+02 0.0025 26.8 7.7 81 6-117 624-708 (742)
45 cd03457 intradiol_dioxygenase_ 47.9 30 0.00064 25.6 3.7 25 46-70 85-109 (188)
46 KOG4445 Uncharacterized conser 47.5 24 0.00051 28.4 3.2 25 48-72 45-69 (368)
47 PF03366 YEATS: YEATS family; 47.1 60 0.0013 20.7 4.6 42 31-74 2-43 (84)
48 PRK11700 hypothetical protein; 46.8 1.2E+02 0.0026 22.6 6.8 71 29-105 87-184 (187)
49 KOG0177 20S proteasome, regula 46.8 11 0.00024 28.0 1.2 32 81-112 135-166 (200)
50 KOG3285 Spindle assembly check 42.2 44 0.00096 24.8 3.7 53 3-66 121-173 (203)
51 cd07981 TAF12 TATA Binding Pro 41.2 84 0.0018 19.2 4.7 42 105-146 6-47 (72)
52 cd03459 3,4-PCD Protocatechuat 40.4 47 0.001 23.8 3.7 25 46-70 71-100 (158)
53 cd05845 Ig2_L1-CAM_like Second 40.2 67 0.0015 20.9 4.1 26 45-72 16-41 (95)
54 PF14135 DUF4302: Domain of un 39.5 1.1E+02 0.0023 23.3 5.7 48 2-60 10-57 (235)
55 KOG0662 Cyclin-dependent kinas 39.3 32 0.00069 26.0 2.7 55 62-116 167-225 (292)
56 COG0544 Tig FKBP-type peptidyl 39.1 77 0.0017 26.7 5.2 13 50-62 211-223 (441)
57 PF03847 TFIID_20kDa: Transcri 37.0 1E+02 0.0022 18.9 4.4 42 105-146 4-45 (68)
58 PF13950 Epimerase_Csub: UDP-g 35.8 43 0.00094 20.0 2.5 20 91-110 36-55 (62)
59 PF12018 DUF3508: Domain of un 34.4 63 0.0014 25.4 3.8 30 117-146 237-266 (281)
60 PF12065 DUF3545: Protein of u 33.8 30 0.00065 20.8 1.5 12 4-15 37-48 (59)
61 KOG0744 AAA+-type ATPase [Post 30.1 72 0.0016 26.3 3.5 73 26-114 169-249 (423)
62 TIGR02423 protocat_alph protoc 29.8 81 0.0018 23.5 3.5 25 46-70 95-124 (193)
63 cd03463 3,4-PCD_alpha Protocat 27.3 97 0.0021 22.9 3.6 24 47-70 92-120 (185)
64 PF09280 XPC-binding: XPC-bind 27.1 1.1E+02 0.0023 18.2 3.1 22 118-139 33-54 (59)
65 PF11333 DUF3135: Protein of u 26.7 1.4E+02 0.003 19.1 3.8 24 122-145 8-31 (83)
66 KOG2851 Eukaryotic-type DNA pr 24.7 1.6E+02 0.0035 24.4 4.6 32 78-109 332-369 (412)
67 COG2819 Predicted hydrolase of 24.6 1.2E+02 0.0025 23.9 3.7 30 42-71 15-46 (264)
68 PF04881 Adeno_GP19K: Adenovir 24.6 86 0.0019 21.9 2.6 20 27-46 44-63 (139)
69 KOG1047 Bifunctional leukotrie 24.2 79 0.0017 27.6 2.9 30 42-72 247-279 (613)
70 PF00779 BTK: BTK motif; Inte 24.0 31 0.00067 18.0 0.3 16 73-88 2-18 (32)
71 PRK15486 hpaC 4-hydroxyphenyla 23.7 39 0.00085 24.5 0.9 68 6-90 6-76 (170)
72 PF01175 Urocanase: Urocanase; 22.4 1.4E+02 0.0031 25.8 4.1 25 121-145 272-296 (546)
73 PRK05414 urocanate hydratase; 21.5 1.1E+02 0.0024 26.5 3.2 26 121-146 282-307 (556)
74 TIGR01228 hutU urocanate hydra 21.4 1.1E+02 0.0024 26.3 3.2 26 121-146 273-298 (545)
75 cd01145 TroA_c Periplasmic bin 21.2 1.1E+02 0.0025 22.3 3.0 47 93-145 111-157 (203)
76 PF12652 CotJB: CotJB protein; 21.2 2.3E+02 0.0049 17.9 3.9 31 116-146 24-54 (78)
77 PF04314 DUF461: Protein of un 20.8 1.3E+02 0.0028 19.9 2.9 27 32-58 77-103 (110)
78 smart00803 TAF TATA box bindin 20.8 2.1E+02 0.0045 17.2 3.7 29 118-146 19-47 (65)
79 COG3866 PelB Pectate lyase [Ca 20.5 1.9E+02 0.0041 23.4 4.2 40 31-71 197-240 (345)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-58 Score=319.96 Aligned_cols=148 Identities=78% Similarity=1.415 Sum_probs=146.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeC
Q 032060 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (148)
+|.+||++|+++|++++++|+++.++.+|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||++
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhhCC
Q 032060 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||+|+|+++|+|+.+|..||.+|++||.+||+++|++.++|++|+.|+.+|.++||+|+++|||+
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-56 Score=314.86 Aligned_cols=146 Identities=60% Similarity=1.170 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeC
Q 032060 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (148)
|.+||++|++.|+++++.++++.++++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++||||||++
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 678999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhhC
Q 032060 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|+||+|+|.++|+|++++.+||.+|+++|.+||.++|+|.|||++|++|+++|.++||+++++||.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 3
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.7e-53 Score=302.32 Aligned_cols=147 Identities=75% Similarity=1.330 Sum_probs=144.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeC
Q 032060 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (148)
||.+||++|+++|++++++++.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhhC
Q 032060 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|.+|+++|.++|++|+++||.
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.2e-52 Score=301.01 Aligned_cols=147 Identities=48% Similarity=0.896 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCC
Q 032060 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
+.|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+++
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhhCC
Q 032060 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG 148 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++||++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999963
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-52 Score=285.62 Aligned_cols=144 Identities=43% Similarity=0.922 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCC
Q 032060 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|-|||++|+++|+++++.|++..|.++|++.|.+.|.||.+|||+||+|++.|.|+++||.+||.|+|.+..||||||.+
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHh
Q 032060 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKY 145 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
|.+|+|+|...|+|+|++..||.+||+||.+||+++|+|.|||++|.+|+++|.+++++.+.|.
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998764
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-47 Score=264.65 Aligned_cols=144 Identities=39% Similarity=0.844 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeC
Q 032060 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (148)
|..-|+++|++|++++.+|+.+..+++ |+++|.|.|.||++|.|+||.|+..+.||.+||.+||+++|.|.+||||||+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 346689999999999999999998886 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHh
Q 032060 81 NGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKY 145 (148)
Q Consensus 81 ~G~icl~~l~-------------~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
+|.+|+++|. +.|+|..|+++||++|.+||.+||.++|+|.+||+.|++|+++|.++++.++++.
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999999993 4699999999999999999999999999999999999999999999999999864
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-46 Score=258.93 Aligned_cols=148 Identities=39% Similarity=0.793 Sum_probs=142.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecC-----CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccc
Q 032060 1 MASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 75 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~-----~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~H 75 (148)
+|+.||+.|-+.+.++.+-|+++.|.. .|++.|+|.|.|++||+||||.|.+++.||++||.+||+++|.+++||
T Consensus 4 ~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~H 83 (158)
T KOG0424|consen 4 IALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFH 83 (158)
T ss_pred hHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcC
Confidence 378999999999999999999999886 479999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCceeccCCCCC--CCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhhCC
Q 032060 76 PNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG 148 (148)
Q Consensus 76 pnv~~~G~icl~~l~~~--W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
||||++|.|||++|.++ |+|+.||.+||..||+||.+||+.+|+|.||..+|.+|+.+|.++||.++++||.+
T Consensus 84 PNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 84 PNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 99999999999999755 99999999999999999999999999999999999999999999999999999863
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-46 Score=269.04 Aligned_cols=147 Identities=46% Similarity=0.832 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhhcCC---CCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccccee
Q 032060 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNI 78 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~---~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 78 (148)
|.+||++|++++.+++ ..++.++.+++|+.+..+.|.||+|||||||+|.+.|++|++|||+||+|+|.|.||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999997 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred eC-CCceeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhhCC
Q 032060 79 NS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG 148 (148)
Q Consensus 79 ~~-~G~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
++ +|.||+|+|++.|.+++|+..+|.+||++|..|++.+|...+.|+.|.+|++.|.+.||.|+..||++
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 95 99999999999999999999999999999999999999999999999999999999999999999975
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.2e-45 Score=261.74 Aligned_cols=138 Identities=57% Similarity=1.138 Sum_probs=129.1
Q ss_pred HHHHHHHHhhcCCCCCeeEeecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCCCc
Q 032060 5 RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (148)
||++|+++|+++++.|+.+.+.++ |+.+|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC-CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHH
Q 032060 84 ICLDILKE-QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWT 142 (148)
Q Consensus 84 icl~~l~~-~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 142 (148)
||+++|.. .|+|++++.+||.+|+++|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999974 599999999999999999999999999999999999999999999999984
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=251.84 Aligned_cols=146 Identities=39% Similarity=0.846 Sum_probs=140.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecC-CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceee
Q 032060 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~-~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (148)
+|+|||++||++|..++++|+.+.|.+ +|+++|.|.|.||++|+|+||.|..++.||.+||.+||+++|...+|||||+
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 489999999999999999999999987 6899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 032060 80 SNGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146 (148)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
++|+||+++|. +.|+|..+++.||+++.+||.+||.++.+|.+|+.++++|+++|.+.|+..++|.-
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKTL 163 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 99999999983 57999999999999999999999999999999999999999999999999998753
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.6e-45 Score=260.32 Aligned_cols=140 Identities=59% Similarity=1.137 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCCC
Q 032060 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (148)
.|||++|+++|+++++.|+++.+.++|+++|+++|.|+++|||+||.|++.|.||++||++||+|+|.++++||||+.+|
T Consensus 1 ~~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 1 SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred CchHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCC-CCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHH
Q 032060 83 SICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWT 142 (148)
Q Consensus 83 ~icl~~l~~~-W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 142 (148)
.||++++... |+|++++.+||.+|+++|.+|+.++|+|.+||.+|++|+++|.++|+.|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999876 99999999999999999999999999999999999999999999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.7e-44 Score=257.26 Aligned_cols=143 Identities=62% Similarity=1.167 Sum_probs=139.1
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCCC
Q 032060 4 KRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (148)
+||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998875 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 032060 83 SICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146 (148)
Q Consensus 83 ~icl~~l~-~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.||++++. ++|+|++++.+||.+|+++|.+|+.++++|.+||++|++|+++|.++|++++++++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999975
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=250.00 Aligned_cols=142 Identities=39% Similarity=0.767 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCCC
Q 032060 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (148)
.|||++|+..|+-...+||++.|..+|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+|+|+|+.||||||..|
T Consensus 31 ~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~G 110 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSG 110 (175)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHh
Q 032060 83 SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKY 145 (148)
Q Consensus 83 ~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
.||+|+|++.|+..|+++.||++||+||-+||.++|+|..||.++. |.++|++.+.+..++.
T Consensus 111 nIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 111 NICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999 9999999998887653
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-41 Score=232.06 Aligned_cols=146 Identities=38% Similarity=0.800 Sum_probs=137.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCee-EeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceee
Q 032060 1 MASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~-~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (148)
+|.+||.+|+.+|+++....+. +...+.|++.|.+.|. |.+-||..|.|+++|.||.+|||.||+|.|.|.|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4889999999999998766443 4456689999999998 8999999999999999999999999999999999999999
Q ss_pred CCCceeccCC-CCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhhC
Q 032060 80 SNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAM 147 (148)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+.|.+|+.++ .++|.|++.+.+||++|..++.+|+++.|++.|+|..|.+|+.+|.++|.++++||+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999998 5899999999999999999999999999999999999999999999999999999984
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=230.53 Aligned_cols=144 Identities=36% Similarity=0.747 Sum_probs=134.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeC-
Q 032060 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS- 80 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~- 80 (148)
+.||+..|...|... +..+...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 468999999888774 3457778889999999999999999999999999999999999999999999999999995
Q ss_pred CCceeccCCCCCCCCcCCHHHHHH-HHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhhCC
Q 032060 81 NGSICLDILKEQWSPALTISKVLL-SICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~-~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.|||+.++..|+|.+.+..|+. .|-.||..||+.+|+|.|||.+|.+++++|.+++++++++||+.
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999987 56789999999999999999999999999999999999999973
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-37 Score=221.38 Aligned_cols=145 Identities=35% Similarity=0.674 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCcc--eEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceee
Q 032060 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMF--HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~--~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (148)
|.-||++|..+++--+....++....++.. +.+++|. |+.+-|.||.|.|.+.+|+.||++||+|+|+|.+|||||+
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 556777777777653332222222223433 5899998 9999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhhC
Q 032060 80 SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAM 147 (148)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
.+|.|||++|+++|+|+.+|.+|+..|+.||.+|++++|+|.|||..+++|++.|...||...+.++.
T Consensus 108 ~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 108 LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999998877654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-38 Score=224.24 Aligned_cols=146 Identities=40% Similarity=0.711 Sum_probs=142.6
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCCC
Q 032060 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (148)
+|.|.+|++.|...|+.|+.+.+.++|+....+.|.||.||||++|.|+..+.+..+||.+||+-.|+|.||||||-.+|
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhhCC
Q 032060 83 SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG 148 (148)
Q Consensus 83 ~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
.||.+.|..+|+|+.+|.+||..|+.||..|++++++|.||+++..++.++|.+.||.+++-+|++
T Consensus 92 EICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred eehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999988863
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=191.66 Aligned_cols=117 Identities=38% Similarity=0.788 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecc-ccceeeC
Q 032060 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINS 80 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~~ 80 (148)
|.+||+||+.+++.+++.|+... +.+|+.+|.+.+.|.+||.|+|..|.++++||+.||++.|+|.|..++ .||+||+
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS 94 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS 94 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec
Confidence 78999999999999999999987 789999999999999999999999999999999999999999999876 7999999
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHHHhhcC-CCCCCCC
Q 032060 81 NGSICLDILKEQWSPALTISKVLLSICSLLTD-PNPDDPL 119 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~ll~~-p~~~~~~ 119 (148)
||.||+++|.+.|+|++++.+|.++|.+||++ .....|.
T Consensus 95 NGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 95 NGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred CCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 99999999999999999999999999999985 3333443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-29 Score=184.33 Aligned_cols=111 Identities=35% Similarity=0.764 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCC
Q 032060 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|.|||++||+.|.++|.+++.+.|..+|+.+||.+|.||++|||+||.|+..|.||.+||++||-|++.|| +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999997 4556678
Q ss_pred CceeccCC---CCCCCCcCCHHHHHHHHHHhhcCCC
Q 032060 82 GSICLDIL---KEQWSPALTISKVLLSICSLLTDPN 114 (148)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il~~l~~ll~~p~ 114 (148)
-++||++- .+.|+|++++.+||..|.++|.+-.
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence 89999876 4899999999999999999998643
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-25 Score=164.44 Aligned_cols=140 Identities=26% Similarity=0.437 Sum_probs=127.8
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCeeEEeeccccceeeC-
Q 032060 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPF--KPPKVAFRTKVFHPNINS- 80 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~--~pP~v~f~t~i~Hpnv~~- 80 (148)
.-|+.|+..+.+.+.+|+++.|+-.|-+.|.++|++.. +.|.||+|+|+|.+|++||. +-|+|.|.++++||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 35788889999999999999999999999999999655 56999999999999999994 689999999999999996
Q ss_pred CCceeccCCCCCCCCcC-CHHHHHHHHHHhhcCCCCCCC--CCHHHHHHHhhCHHHHHHHHHHHHHH
Q 032060 81 NGSICLDILKEQWSPAL-TISKVLLSICSLLTDPNPDDP--LVPEIAHMYKTDRSKYETTARSWTQK 144 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~-~i~~il~~l~~ll~~p~~~~~--~n~~a~~~~~~~~~~f~~~~~~~~~~ 144 (148)
++.+|++.....|...- +|+++|..||..|++|+.+.+ .|+||+.+|.+++++|.++|+++++.
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999998877898775 599999999999999987766 49999999999999999999999874
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-23 Score=156.83 Aligned_cols=110 Identities=37% Similarity=0.817 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCC
Q 032060 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|.|||++|-++|+ +|...+-..|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ +..+..+
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 6899999999999 788888899999999999999999999999999999999999999999999999987 4556668
Q ss_pred CceeccCC---CCCCCCcCCHHHHHHHHHHhhc-CCC
Q 032060 82 GSICLDIL---KEQWSPALTISKVLLSICSLLT-DPN 114 (148)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il~~l~~ll~-~p~ 114 (148)
-+|||++- .+.|.|+|+|+..|.+|..+|- .|+
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 88999987 4889999999999999999886 343
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.1e-18 Score=146.39 Aligned_cols=109 Identities=33% Similarity=0.669 Sum_probs=100.5
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeec--cccceeeCC
Q 032060 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSN 81 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpnv~~~ 81 (148)
+..+.|++-|..+.+.++++...++.+....+.|.|+.+|||..|+|.|.+.||.+||.+||.+...+. .++||.|.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 456778888999999999999999988888999999999999999999999999999999999999875 589999999
Q ss_pred CceeccCCC-------CCCCCcCCHHHHHHHHHHhhcC
Q 032060 82 GSICLDILK-------EQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 82 G~icl~~l~-------~~W~p~~~i~~il~~l~~ll~~ 112 (148)
|++|+++|+ +.|+|+.++.++|.+||.|+-+
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 999999994 6799999999999999999864
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.5e-16 Score=133.67 Aligned_cols=111 Identities=41% Similarity=0.727 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeec---cccceee
Q 032060 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK---VFHPNIN 79 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~---i~Hpnv~ 79 (148)
.+|+++|++-+.++.++++.+.+.+..+...++.|.|+.+|||++|.|.|.|.||..||..||.+.+.+. .+.||.|
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999986 5899999
Q ss_pred CCCceeccCCC-------CCCCCc-CCHHHHHHHHHHhhcCC
Q 032060 80 SNGSICLDILK-------EQWSPA-LTISKVLLSICSLLTDP 113 (148)
Q Consensus 80 ~~G~icl~~l~-------~~W~p~-~~i~~il~~l~~ll~~p 113 (148)
.+|+||+++|- +.|+|. .+|.++|.+||.++.+-
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 99999999982 679999 78999999999999754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.3e-13 Score=94.94 Aligned_cols=108 Identities=31% Similarity=0.536 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCCCCe-eEeecC-CC--cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceee-
Q 032060 5 RILKELKDLQKDPPTSC-SAGPVA-ED--MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN- 79 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~-~~~~~~-~n--~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~- 79 (148)
||.+|+.+=++--.++. +....+ +| +..|...|.||+.|+||+.+|.+.|....+||..||+|+|.+++--+-|.
T Consensus 9 rlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~ 88 (138)
T KOG0896|consen 9 RLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNS 88 (138)
T ss_pred hhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccccc
Confidence 67777766655433332 222222 23 67899999999999999999999999999999999999999999878777
Q ss_pred CCCceeccCC--CCCCCCcCCHHHHHHHHHHhhcC
Q 032060 80 SNGSICLDIL--KEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 80 ~~G~icl~~l--~~~W~p~~~i~~il~~l~~ll~~ 112 (148)
.+|.+.-..+ -.+|+-.+++..+|..++.++..
T Consensus 89 ~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 89 SNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred CCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 4777754333 28999999999999999976654
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.87 E-value=9.9e-09 Score=72.06 Aligned_cols=67 Identities=33% Similarity=0.780 Sum_probs=61.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEEeecc---ccceeeCCCceec---cCCCCCCCCcCCHHHHHHHHHHhhcC
Q 032060 46 AGGVFLVTIHFPPDYPFKPPKVAFRTKV---FHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 46 ~g~~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~il~~l~~ll~~ 112 (148)
.|+.+.+.|.||+.||..||.|....+. +-|||+.+|.+|+ +..-+.|.|.-.+.++|.+++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654 6899999999999 77779999999999999999999984
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.2e-08 Score=68.65 Aligned_cols=92 Identities=21% Similarity=0.454 Sum_probs=69.6
Q ss_pred EEEEEEcCCCCCCCCCeeEEeeccc-cceeeCCCceeccCC-CCCCCCcCCHHHHHHHHHHhhcCCC--CCCCCCHHHHH
Q 032060 50 FLVTIHFPPDYPFKPPKVAFRTKVF-HPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPN--PDDPLVPEIAH 125 (148)
Q Consensus 50 f~~~i~fp~~YP~~pP~v~f~t~i~-Hpnv~~~G~icl~~l-~~~W~p~~~i~~il~~l~~ll~~p~--~~~~~n~~a~~ 125 (148)
.-+.+.|+++||+.||.+|...++- -.-|-.+|.||+.++ .++|+.+++++.+++++..++.... ...+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 4577889999999999999886643 345557999999999 4889999999999999999998753 4556655443
Q ss_pred HH--hhCHHHHHHHHHHHH
Q 032060 126 MY--KTDRSKYETTARSWT 142 (148)
Q Consensus 126 ~~--~~~~~~f~~~~~~~~ 142 (148)
+| ..-.+.|...++.+.
T Consensus 92 ~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 44 334556666666553
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.74 E-value=8.8e-09 Score=71.91 Aligned_cols=95 Identities=22% Similarity=0.371 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeeEEeec
Q 032060 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~----------f~~~i~fp~~YP~~pP~v~f~t~ 72 (148)
..||..||+.|.+ +++.+.++-..|.-.=.-+.||-|.|.+ |.+++.+|..||.+||.|....-
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 4799999999877 4444444444454333446666666655 56677779999999999987531
Q ss_pred -cccceeeCCCceeccCCC-CCC---CCcCCHHHHH
Q 032060 73 -VFHPNINSNGSICLDILK-EQW---SPALTISKVL 103 (148)
Q Consensus 73 -i~Hpnv~~~G~icl~~l~-~~W---~p~~~i~~il 103 (148)
--..-.|.+|+||++..+ .-| .|.++|.+.+
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 234567779999998875 334 6778888765
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.59 E-value=1.3e-07 Score=65.45 Aligned_cols=78 Identities=24% Similarity=0.587 Sum_probs=54.4
Q ss_pred cceEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeEEeecc-----ccceeeCCCceeccCCCCCCCC-cCCHHH
Q 032060 30 MFHWQATIMGPPDSPYAGGVFL--VTIHFPPDYPFKPPKVAFRTKV-----FHPNINSNGSICLDILKEQWSP-ALTISK 101 (148)
Q Consensus 30 ~~~w~~~i~gp~~t~y~g~~f~--~~i~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~i~~ 101 (148)
+....++|. -.|.|..|. +.|-+|.+||.+||.+...... -+.+|+++|+|.+..| ++|++ +.++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 444455553 248888875 6677899999999999875321 2449999999999988 89998 678999
Q ss_pred HHHHHHHhhcC
Q 032060 102 VLLSICSLLTD 112 (148)
Q Consensus 102 il~~l~~ll~~ 112 (148)
++..|...|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999988864
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=7.8e-06 Score=56.51 Aligned_cols=95 Identities=21% Similarity=0.378 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeeEEeec
Q 032060 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~----------f~~~i~fp~~YP~~pP~v~f~t~ 72 (148)
++||..||+.|.. +++.+.++-..|.-.-..++||-|-|.+ |.+++.+|-.||..+|.|....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 5899999999976 4444445555565444558889888877 55666679999999999875321
Q ss_pred -cccceeeCCCceeccCC-CCCCC---CcCCHHHHH
Q 032060 73 -VFHPNINSNGSICLDIL-KEQWS---PALTISKVL 103 (148)
Q Consensus 73 -i~Hpnv~~~G~icl~~l-~~~W~---p~~~i~~il 103 (148)
--.-..+.+|.||+.-. +.-|. |.++|.+.+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 11234566999999654 45564 556666553
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=4.3e-05 Score=60.69 Aligned_cols=76 Identities=22% Similarity=0.518 Sum_probs=60.0
Q ss_pred eCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeEEeec-----cccceeeCCCceeccCCCCCCCC-cCCHHHHHHHHHHh
Q 032060 38 MGPPDSPYAGGVFL--VTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILKEQWSP-ALTISKVLLSICSL 109 (148)
Q Consensus 38 ~gp~~t~y~g~~f~--~~i~fp~~YP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~~~W~p-~~~i~~il~~l~~l 109 (148)
.|---.+|.|.+|. +.|-+.+.||..||.+..... -.|-+|+++|.|.|..| .+|.+ +.++..+++.|...
T Consensus 56 ~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~ 134 (365)
T KOG2391|consen 56 DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAA 134 (365)
T ss_pred cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHHH
Confidence 34334578888876 556679999999999876421 13899999999999999 88984 56799999999999
Q ss_pred hcCCC
Q 032060 110 LTDPN 114 (148)
Q Consensus 110 l~~p~ 114 (148)
|.++.
T Consensus 135 f~~~p 139 (365)
T KOG2391|consen 135 FSEDP 139 (365)
T ss_pred hcCCC
Confidence 98643
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.08 E-value=0.0081 Score=41.50 Aligned_cols=90 Identities=21% Similarity=0.388 Sum_probs=61.6
Q ss_pred CCeeEeecCCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCCCce--eccCC-----
Q 032060 19 TSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI--CLDIL----- 89 (148)
Q Consensus 19 ~~~~~~~~~~n~~~w~~~i~g--p~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~i--cl~~l----- 89 (148)
.|+..+.+.+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|-+-+..|-.... .+|.+ |-+..
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 45566666677777766 555 55667999999999999999999999877664432111 12334 33222
Q ss_pred ---------CCCCCCcCC-HHHHHHHHHHhhc
Q 032060 90 ---------KEQWSPALT-ISKVLLSICSLLT 111 (148)
Q Consensus 90 ---------~~~W~p~~~-i~~il~~l~~ll~ 111 (148)
...|.|..+ |.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 256999874 8888888887764
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.06 E-value=0.0025 Score=42.43 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecc
Q 032060 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV 73 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~g--p~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i 73 (148)
.+.+.|+..|...-+... ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 567888888888644444 22334455666666632 2334445568999999999999999999877653
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.55 E-value=0.035 Score=36.50 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEEee
Q 032060 46 AGGVFLVTIHFPPDYPFKPPKVAFRT 71 (148)
Q Consensus 46 ~g~~f~~~i~fp~~YP~~pP~v~f~t 71 (148)
....+.+.+.||++||..+|.|.+.+
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568999999999999999998765
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.43 E-value=0.17 Score=36.75 Aligned_cols=62 Identities=34% Similarity=0.537 Sum_probs=48.8
Q ss_pred EEEEEcCCCCCCCCCeeEEeeccc---cceeeCC-----CceeccCCC-CCCCCcCCHHHHHHHHHHhhcC
Q 032060 51 LVTIHFPPDYPFKPPKVAFRTKVF---HPNINSN-----GSICLDILK-EQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 51 ~~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l~-~~W~p~~~i~~il~~l~~ll~~ 112 (148)
.+.|.|+.+||..+|.|.+....| +||+... ..+|+.--. ..|.++.++..+|..|..-|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 367899999999999877765433 5788865 679985442 6799999999999999988863
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=92.35 E-value=0.2 Score=39.64 Aligned_cols=85 Identities=20% Similarity=0.444 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCCCc
Q 032060 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (148)
++|.+|+.+|..+....+. .++++....+.+. -+...+.++|.+|.+||.++|.+...-+
T Consensus 102 s~ll~EIe~IGW~kl~~i~---~d~~ls~i~l~~~------D~~R~H~l~l~l~~~yp~~~p~~~~~~P----------- 161 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLVQIQ---FDDDLSTIKLKIF------DSSRQHYLELKLPSNYPFEPPSCSLDLP----------- 161 (291)
T ss_dssp -CHHHHHHHHHCGCCEEEE---E-CCCSEEEEEEE------TTCEEEEEEEETTTTTTTSEEEECS-TT-----------
T ss_pred HHHHHHHHHhccccceEEe---cCCCccEEEEEEE------cCCceEEEEEEECCCCCCCCceeeCCCC-----------
Confidence 5677888887765433221 3578888888887 2236688999999999999997532211
Q ss_pred eeccCCCCCCCC-cCCHHHHHHHHHHhhc
Q 032060 84 ICLDILKEQWSP-ALTISKVLLSICSLLT 111 (148)
Q Consensus 84 icl~~l~~~W~p-~~~i~~il~~l~~ll~ 111 (148)
+ .+...|.+ ..++.+++...+..+.
T Consensus 162 --~-~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 162 --I-PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp --S--HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred --c-chhhhhcccccCHHHHHHHHHHHHH
Confidence 1 11257888 6678887776666554
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=86.42 E-value=2 Score=32.50 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCC--CCCCCCEEEEEEEcCCCCCCCCCeeEEe
Q 032060 7 LKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPD--SPYAGGVFLVTIHFPPDYPFKPPKVAFR 70 (148)
Q Consensus 7 ~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~--t~y~g~~f~~~i~fp~~YP~~pP~v~f~ 70 (148)
.+|+..|...-+.... ...+.+...+.+.|.-..+ .-+.| .+.+.+.++++||..+|.|.+.
T Consensus 8 e~E~EaLeSIY~de~~-~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 8 EEELEALESIYPDEFK-HINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHhccchhh-hhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 3566666664333331 1122333335566653222 22333 7889999999999999999443
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.56 E-value=5.8 Score=35.60 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCC-EEEEEEEcCCCCCC-CCCeeEEeec
Q 032060 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGG-VFLVTIHFPPDYPF-KPPKVAFRTK 72 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~-~f~~~i~fp~~YP~-~pP~v~f~t~ 72 (148)
|..|+.-|-. ..+.+.++-.+-.-..-.+.+.||--.. .|- ..++.|.||.+||. .+|.+.|..+
T Consensus 425 LgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 425 LGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred HHhHHhHhhc-cccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4455544433 2233344333334455666777654333 333 35789999999997 5789988643
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=79.41 E-value=6.8 Score=31.65 Aligned_cols=68 Identities=25% Similarity=0.496 Sum_probs=47.1
Q ss_pred cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEe-eccccceeeCCCceeccCCCCCCCCcC--CHHHHHHHH
Q 032060 30 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFR-TKVFHPNINSNGSICLDILKEQWSPAL--TISKVLLSI 106 (148)
Q Consensus 30 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~-t~i~Hpnv~~~G~icl~~l~~~W~p~~--~i~~il~~l 106 (148)
...+.+.| ||.|...+-+|.|...||..||-+.|- ..-|+|... . +..| .+|++.- .+..++..|
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHH
Confidence 45566666 499999999999999999999999996 334787422 1 1223 6898764 355555555
Q ss_pred HHh
Q 032060 107 CSL 109 (148)
Q Consensus 107 ~~l 109 (148)
..+
T Consensus 121 ~~~ 123 (333)
T PF06113_consen 121 RQL 123 (333)
T ss_pred HHH
Confidence 443
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=76.19 E-value=4.4 Score=29.54 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=24.2
Q ss_pred ecccc---ceeeCCCceeccCCCCCCCCcCCHHHHHHHHHHhhcC
Q 032060 71 TKVFH---PNINSNGSICLDILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 71 t~i~H---pnv~~~G~icl~~l~~~W~p~~~i~~il~~l~~ll~~ 112 (148)
|++|| +||+.+|.||+.... .|.......+......|.+
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~ 131 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFN 131 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhC
Confidence 44566 499999999997632 2444444556666555543
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=68.57 E-value=7.7 Score=29.72 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=27.7
Q ss_pred ecccc---ceeeCCCceeccCCCCCCCCcC-CHHHHHHHHHHhhcCCCC
Q 032060 71 TKVFH---PNINSNGSICLDILKEQWSPAL-TISKVLLSICSLLTDPNP 115 (148)
Q Consensus 71 t~i~H---pnv~~~G~icl~~l~~~W~p~~-~i~~il~~l~~ll~~p~~ 115 (148)
|++|| +||+++|.||+.... .|.. ++.+ +....+.|.+-.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~F 175 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRF 175 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcc
Confidence 34565 389999999997653 5553 4666 7777777765433
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=63.93 E-value=6 Score=22.07 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhcC
Q 032060 3 SKRILKELKDLQKD 16 (148)
Q Consensus 3 ~~RL~~E~~~l~~~ 16 (148)
-+||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999875
No 42
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=59.21 E-value=24 Score=28.60 Aligned_cols=28 Identities=29% Similarity=0.654 Sum_probs=22.6
Q ss_pred CCEEEEEEEcCCCCCCCCCeeEEeecccc
Q 032060 47 GGVFLVTIHFPPDYPFKPPKVAFRTKVFH 75 (148)
Q Consensus 47 g~~f~~~i~fp~~YP~~pP~v~f~t~i~H 75 (148)
+-.|-+.|.+|..||...|.++|.+- ||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS~-yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQSV-YH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEee-cc
Confidence 34477888899999999999999863 44
No 43
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=51.84 E-value=25 Score=24.75 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=22.0
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeeEEe
Q 032060 46 AGGVFLVTIHFPPDYP-FKPPKVAFR 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~YP-~~pP~v~f~ 70 (148)
+.|.|.|.-.+|..|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 4488999999999999 999999775
No 44
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=49.44 E-value=1.2e+02 Score=26.81 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=45.4
Q ss_pred HHHHHHHhhcCCCCCeeEeec----CCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCC
Q 032060 6 ILKELKDLQKDPPTSCSAGPV----AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~----~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|++|+..|.. .+.+.++ ++|-....|.|. .+.-| .+++..|.+||...
T Consensus 624 lqgElarLD~----kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq~----------------- 675 (742)
T KOG4274|consen 624 LQGELARLDA----KFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQN----------------- 675 (742)
T ss_pred HHHHHHhhcc----ceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeeccccccccc-----------------
Confidence 5677777654 2333333 245445556664 33334 48888899998743
Q ss_pred CceeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCC
Q 032060 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDD 117 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~ 117 (148)
+|.+.- -.+..+.-+.++=.++++-|+.|...+
T Consensus 676 --~~vdr~-~~y~a~pflq~vq~s~~~RlsrP~~~S 708 (742)
T KOG4274|consen 676 --VTVDRA-VIYLAAPFLQDVQNSVYERLSRPGLSS 708 (742)
T ss_pred --hhhhhH-HHhhhcHHHHHHHHHHHHHHccCCcch
Confidence 444311 112344446667777777777765554
No 45
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=47.90 E-value=30 Score=25.64 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEEe
Q 032060 46 AGGVFLVTIHFPPDYPFKPPKVAFR 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~YP~~pP~v~f~ 70 (148)
+.|.|.|.=.+|--||..+|-|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4578999999999999999999875
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=47.48 E-value=24 Score=28.36 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.5
Q ss_pred CEEEEEEEcCCCCCCCCCeeEEeec
Q 032060 48 GVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 48 ~~f~~~i~fp~~YP~~pP~v~f~t~ 72 (148)
-++.+.+..++.||.+.|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5688999999999999999998865
No 47
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=47.13 E-value=60 Score=20.70 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=28.2
Q ss_pred ceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccc
Q 032060 31 FHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF 74 (148)
Q Consensus 31 ~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~ 74 (148)
..|.+.+.|+.+.....-+=++...+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 47999999988765566677888889988886 5555554433
No 48
>PRK11700 hypothetical protein; Provisional
Probab=46.80 E-value=1.2e+02 Score=22.58 Aligned_cols=71 Identities=20% Similarity=0.480 Sum_probs=44.1
Q ss_pred CcceEEEE---EeCCCCCCC-CCCEEEEEEEcC--------------CCCCCCCCeeEEe--ec------cccceee-CC
Q 032060 29 DMFHWQAT---IMGPPDSPY-AGGVFLVTIHFP--------------PDYPFKPPKVAFR--TK------VFHPNIN-SN 81 (148)
Q Consensus 29 n~~~w~~~---i~gp~~t~y-~g~~f~~~i~fp--------------~~YP~~pP~v~f~--t~------i~Hpnv~-~~ 81 (148)
....|.+. +.-|.+.-| .-|.=|+++.+| .+.|..++-|++. +| .-+|-|- ++
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 34556443 333544445 456778888888 3344455545544 33 5688888 69
Q ss_pred CceeccCCCCCCCCcCCHHHHHHH
Q 032060 82 GSICLDILKEQWSPALTISKVLLS 105 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~ 105 (148)
|.+|+... .++|..|+.+
T Consensus 167 ~~vcIK~H------P~slk~IV~S 184 (187)
T PRK11700 167 GGICIKFH------PHSIKEIVAS 184 (187)
T ss_pred CCEEEEEc------CccHHHHHHh
Confidence 99999776 4567776654
No 49
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.79 E-value=11 Score=28.04 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=26.2
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHHHhhcC
Q 032060 81 NGSICLDILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~ll~~ 112 (148)
.+..|++++.+.|+|.+|.++-+.-++.++.+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999998887766665543
No 50
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.24 E-value=44 Score=24.77 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCe
Q 032060 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPK 66 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~ 66 (148)
.+|+++|++++.++-...++..|.-+-.-.+.+.+.-..++ ..|.++-.+-|+
T Consensus 121 ~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~ 173 (203)
T KOG3285|consen 121 LKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT-----------EVPEKWDESGPK 173 (203)
T ss_pred HHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc-----------cCCcchhcCCCe
Confidence 68999999999998777788888877777888887654443 345555555554
No 51
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=41.18 E-value=84 Score=19.24 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 032060 105 SICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146 (148)
Q Consensus 105 ~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++..-++..-+..+|...+.+--+.|...+-..+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667789999999999988999888777766665
No 52
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=40.37 E-value=47 Score=23.83 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=21.6
Q ss_pred CCCEEEEEEEcCCCCC-----CCCCeeEEe
Q 032060 46 AGGVFLVTIHFPPDYP-----FKPPKVAFR 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~YP-----~~pP~v~f~ 70 (148)
+.|.|.|.-.+|.-|| ..||.|.|.
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 3478999999999999 799998775
No 53
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=40.24 E-value=67 Score=20.94 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=21.1
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeeEEeec
Q 032060 45 YAGGVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 45 y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 72 (148)
-+|..+.|.-.-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46778888888899999 589988754
No 54
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=39.48 E-value=1.1e+02 Score=23.26 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCC
Q 032060 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 60 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~Y 60 (148)
+..||...++++++. ......-|.+......+.-| || |.+.+.|.++=
T Consensus 10 ~~eR~~e~~~~~k~~---------L~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~ 57 (235)
T PF14135_consen 10 PAERINEALAEYKKI---------LTSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDG 57 (235)
T ss_pred HHHHHHHHHHHHHHH---------HhcCCCceEEEEECCCCccC-Cc-EEEEEEECCCC
Confidence 567988887777762 12333447777773222223 33 88888886543
No 55
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=39.27 E-value=32 Score=26.00 Aligned_cols=55 Identities=29% Similarity=0.554 Sum_probs=43.6
Q ss_pred CCCCeeEEeeccccceee--CCCceeccCCCCCC--CCcCCHHHHHHHHHHhhcCCCCC
Q 032060 62 FKPPKVAFRTKVFHPNIN--SNGSICLDILKEQW--SPALTISKVLLSICSLLTDPNPD 116 (148)
Q Consensus 62 ~~pP~v~f~t~i~Hpnv~--~~G~icl~~l~~~W--~p~~~i~~il~~l~~ll~~p~~~ 116 (148)
..||-|-|-.+.|.-.|+ +.|-|--++.+.+| -|+-++.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 479999999999999998 46666556666666 58888999999999999887644
No 56
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=39.14 E-value=77 Score=26.72 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=11.4
Q ss_pred EEEEEEcCCCCCC
Q 032060 50 FLVTIHFPPDYPF 62 (148)
Q Consensus 50 f~~~i~fp~~YP~ 62 (148)
..+.++||++|+.
T Consensus 211 k~i~vtFP~dy~a 223 (441)
T COG0544 211 KDIKVTFPEDYHA 223 (441)
T ss_pred eEEEEEcccccch
Confidence 6688999999996
No 57
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=36.99 E-value=1e+02 Score=18.89 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=29.5
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 032060 105 SICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146 (148)
Q Consensus 105 ~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.|+..-++...+.+++..++.+=-+.|...+-..+.+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778877888999999999988888888888777766655
No 58
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=35.83 E-value=43 Score=19.97 Aligned_cols=20 Identities=10% Similarity=0.371 Sum_probs=12.5
Q ss_pred CCCCCcCCHHHHHHHHHHhh
Q 032060 91 EQWSPALTISKVLLSICSLL 110 (148)
Q Consensus 91 ~~W~p~~~i~~il~~l~~ll 110 (148)
-+|.|.++|.+++...-.-.
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 47999999999998766543
No 59
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=34.39 E-value=63 Score=25.37 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 032060 117 DPLVPEIAHMYKTDRSKYETTARSWTQKYA 146 (148)
Q Consensus 117 ~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.-.+.+|+..|.++++.|...+.+.+++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 447889999999999999999999988754
No 60
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=33.78 E-value=30 Score=20.76 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhc
Q 032060 4 KRILKELKDLQK 15 (148)
Q Consensus 4 ~RL~~E~~~l~~ 15 (148)
+||++|++++.-
T Consensus 37 ~rL~kEL~d~D~ 48 (59)
T PF12065_consen 37 QRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHccc
Confidence 689999988865
No 61
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.14 E-value=72 Score=26.32 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=45.4
Q ss_pred cCCCcceEE--EEEeCCCCCCC----CCCEEEEEEEcCCCCCCCCCeeEEeeccccceeeCCCceeccCCCCCCCCcCC-
Q 032060 26 VAEDMFHWQ--ATIMGPPDSPY----AGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALT- 98 (148)
Q Consensus 26 ~~~n~~~w~--~~i~gp~~t~y----~g~~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~- 98 (148)
++.|+-.|+ +.++||+||-= ++-.=++.|...+.|+..- .|... |. .|+..|-...+
T Consensus 169 vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~-liEin--------------sh-sLFSKWFsESgK 232 (423)
T KOG0744|consen 169 VNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ-LIEIN--------------SH-SLFSKWFSESGK 232 (423)
T ss_pred CCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce-EEEEe--------------hh-HHHHHHHhhhhh
Confidence 346777884 56789999811 1112567777777777532 11000 22 23478865544
Q ss_pred -HHHHHHHHHHhhcCCC
Q 032060 99 -ISKVLLSICSLLTDPN 114 (148)
Q Consensus 99 -i~~il~~l~~ll~~p~ 114 (148)
+..++..|+.|+.+++
T Consensus 233 lV~kmF~kI~ELv~d~~ 249 (423)
T KOG0744|consen 233 LVAKMFQKIQELVEDRG 249 (423)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 8888999999999865
No 62
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=29.79 E-value=81 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=20.3
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeEEe
Q 032060 46 AGGVFLVTIHFPPDYPF-----KPPKVAFR 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~YP~-----~pP~v~f~ 70 (148)
+.|.|.|+-..|..||. .||-|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34779999999999998 77877654
No 63
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.30 E-value=97 Score=22.88 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.1
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeeEEe
Q 032060 47 GGVFLVTIHFPPDYPF-----KPPKVAFR 70 (148)
Q Consensus 47 g~~f~~~i~fp~~YP~-----~pP~v~f~ 70 (148)
.|.|.|+-.+|.-||. .||-|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3779999999999995 77776553
No 64
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=27.09 E-value=1.1e+02 Score=18.24 Aligned_cols=22 Identities=5% Similarity=0.211 Sum_probs=18.9
Q ss_pred CCCHHHHHHHhhCHHHHHHHHH
Q 032060 118 PLVPEIAHMYKTDRSKYETTAR 139 (148)
Q Consensus 118 ~~n~~a~~~~~~~~~~f~~~~~ 139 (148)
..|++.+++..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 3689999999999999988754
No 65
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=26.72 E-value=1.4e+02 Score=19.06 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=19.2
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHh
Q 032060 122 EIAHMYKTDRSKYETTARSWTQKY 145 (148)
Q Consensus 122 ~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
+...++++|+++|.+..++..++.
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~ 31 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEM 31 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHH
Confidence 566788999999999888876654
No 66
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=24.69 E-value=1.6e+02 Score=24.36 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=24.9
Q ss_pred ee-CCCceeccCCC---CCCCCcC--CHHHHHHHHHHh
Q 032060 78 IN-SNGSICLDILK---EQWSPAL--TISKVLLSICSL 109 (148)
Q Consensus 78 v~-~~G~icl~~l~---~~W~p~~--~i~~il~~l~~l 109 (148)
|+ .+|+||.++=- +...|.. +|.+++..|.++
T Consensus 332 VHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 332 VHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred ccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 44 39999987652 6677775 799999999888
No 67
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=24.62 E-value=1.2e+02 Score=23.88 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.5
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCC--CeeEEee
Q 032060 42 DSPYAGGVFLVTIHFPPDYPFKP--PKVAFRT 71 (148)
Q Consensus 42 ~t~y~g~~f~~~i~fp~~YP~~p--P~v~f~t 71 (148)
.+.+.|..|++.+..|.+||-.- |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 56788999999999999999887 9998874
No 68
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=24.57 E-value=86 Score=21.94 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.2
Q ss_pred CCCcceEEEEEeCCCCCCCC
Q 032060 27 AEDMFHWQATIMGPPDSPYA 46 (148)
Q Consensus 27 ~~n~~~w~~~i~gp~~t~y~ 46 (148)
.+|...|.|++.|++||+..
T Consensus 44 PGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred CCCCcceEEEEECCCCccee
Confidence 46788899999999988763
No 69
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=24.22 E-value=79 Score=27.63 Aligned_cols=30 Identities=33% Similarity=0.750 Sum_probs=24.2
Q ss_pred CCCCCCCEEEEEEEcCCCCCC---CCCeeEEeec
Q 032060 42 DSPYAGGVFLVTIHFPPDYPF---KPPKVAFRTK 72 (148)
Q Consensus 42 ~t~y~g~~f~~~i~fp~~YP~---~pP~v~f~t~ 72 (148)
.+||.=|.|-+ +.+|.+||+ +-|-++|+|+
T Consensus 247 ~GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 247 FGPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred cCCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 35777788877 457999997 6799999987
No 70
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=23.99 E-value=31 Score=17.98 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=9.2
Q ss_pred cccceeeCCCc-eeccC
Q 032060 73 VFHPNINSNGS-ICLDI 88 (148)
Q Consensus 73 i~Hpnv~~~G~-icl~~ 88 (148)
.|||.++.+|+ .|-..
T Consensus 2 ~yHPg~~~~g~W~CC~q 18 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQ 18 (32)
T ss_dssp EE-SS-EETTCESSSS-
T ss_pred CcCCCcccCCcCcCCCC
Confidence 48999998776 56543
No 71
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=23.74 E-value=39 Score=24.52 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCCCCeeEeecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEe---eccccceeeCCC
Q 032060 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFR---TKVFHPNINSNG 82 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~---t~i~Hpnv~~~G 82 (148)
+..++++....-..|+++-...++ +.+ .|-+-.-...+. .+||.|-+. +..-|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCC
Confidence 456788888888888887543221 111 122111111121 369999885 235688899999
Q ss_pred ceeccCCC
Q 032060 83 SICLDILK 90 (148)
Q Consensus 83 ~icl~~l~ 90 (148)
.+|+++|.
T Consensus 69 ~F~VnvL~ 76 (170)
T PRK15486 69 KLCINVLN 76 (170)
T ss_pred eEEEEECh
Confidence 99999995
No 72
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=22.43 E-value=1.4e+02 Score=25.78 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=21.3
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHh
Q 032060 121 PEIAHMYKTDRSKYETTARSWTQKY 145 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
.|+.++..+|+++|.+.+++...++
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rh 296 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARH 296 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 4677788899999999999987766
No 73
>PRK05414 urocanate hydratase; Provisional
Probab=21.52 E-value=1.1e+02 Score=26.47 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.1
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhh
Q 032060 121 PEIAHMYKTDRSKYETTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+..+..+|+++|.+.+++..+++.
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 47778889999999999999887663
No 74
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=21.40 E-value=1.1e+02 Score=26.35 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=21.8
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhh
Q 032060 121 PEIAHMYKTDRSKYETTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++..+|+++|.+.|++...++.
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 46777889999999999999877663
No 75
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.24 E-value=1.1e+02 Score=22.35 Aligned_cols=47 Identities=11% Similarity=0.258 Sum_probs=34.5
Q ss_pred CCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHh
Q 032060 93 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKY 145 (148)
Q Consensus 93 W~p~~~i~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
|..-..+..+...|...|..-++. -+..|++|.+.|.++.+...+++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~l~~l~~~~ 157 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDPS------EQEEYKENLRVFLAKLNKLLREW 157 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777888888999988874433 35678888888888776655443
No 76
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.20 E-value=2.3e+02 Score=17.88 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 032060 116 DDPLVPEIAHMYKTDRSKYETTARSWTQKYA 146 (148)
Q Consensus 116 ~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
..|-+.+|-..|.+-.++..+..+++.++|.
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678889999998888888888888887774
No 77
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=20.81 E-value=1.3e+02 Score=19.91 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCCCCCCEEEEEEEcCC
Q 032060 32 HWQATIMGPPDSPYAGGVFLVTIHFPP 58 (148)
Q Consensus 32 ~w~~~i~gp~~t~y~g~~f~~~i~fp~ 58 (148)
-.|+.+.|++..+=.|..+.+++.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 478899998888889999999999854
No 78
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=20.76 E-value=2.1e+02 Score=17.21 Aligned_cols=29 Identities=17% Similarity=0.066 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 032060 118 PLVPEIAHMYKTDRSKYETTARSWTQKYA 146 (148)
Q Consensus 118 ~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
-++.+++..+.++-+.|.+.+-+-+.+|+
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999998888888777766665
No 79
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=20.46 E-value=1.9e+02 Score=23.45 Aligned_cols=40 Identities=35% Similarity=0.640 Sum_probs=28.0
Q ss_pred ceEEEEEeCCCCC-CCCCCEEEEEEE---cCCCCCCCCCeeEEee
Q 032060 31 FHWQATIMGPPDS-PYAGGVFLVTIH---FPPDYPFKPPKVAFRT 71 (148)
Q Consensus 31 ~~w~~~i~gp~~t-~y~g~~f~~~i~---fp~~YP~~pP~v~f~t 71 (148)
.+|+..|.|-.++ -|++|.+++++. |-..+ .+.|+|||-.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~ 240 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGM 240 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeE
Confidence 4688999995544 788999988775 33333 3566999954
Done!