BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032061
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native Stressed
Conforma
Length = 393
Score = 171 bits (432), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/130 (63%), Positives = 109/130 (83%)
Query: 1 MDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF 60
MDVRESIS Q V+++L KHV T +++SN++FSP+SI+V+LS+I+AGS G T DQ+LSF
Sbjct: 3 MDVRESISLQNQVSMNLAKHVITTVSQNSNVIFSPASINVVLSIIAAGSAGATKDQILSF 62
Query: 61 LKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKA 120
LK S DQLN+F+SE+V+ V ADGS +GGP+LSVANG WIDKSLS K +FKQ++++ YKA
Sbjct: 63 LKFSSTDQLNSFSSEIVSAVLADGSANGGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKA 122
Query: 121 ASNQVDFQTK 130
ASNQ DFQ+K
Sbjct: 123 ASNQADFQSK 132
>pdb|1YXA|A Chain A, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
pdb|1YXA|B Chain B, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
Length = 398
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSD 66
TD A SL K + L D+N+VFSP SI L+L+S G+KG TL+++L LK S+
Sbjct: 32 TDFAFSLYKELVLKNP-DTNIVFSPLSISAALALVSLGAKGNTLEEILEGLKFNLTETSE 90
Query: 67 DQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVD 126
++ L+ + P ++S + ++I+K + F++ +Y+A + D
Sbjct: 91 ADIHQGFGHLLQRL---NQPKDQVQISTGSALFIEKRQQILTEFQEKAKTLYQAEAFTAD 147
Query: 127 FQ 128
FQ
Sbjct: 148 FQ 149
>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
Length = 423
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSP 86
+D N+ FSP SI L+L +KG T ++ L + + +++ EL+ A P
Sbjct: 65 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFEQAENIHSGFKELLT---AFNKP 121
Query: 87 SGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQT 129
L AN ++++K+ +L T+ Q+ YKA +V+F+T
Sbjct: 122 RNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKT 164
>pdb|2B4X|I Chain I, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 55 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 114
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + S +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 115 IHFFFAKLNCRLYRKAAKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 172
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + S +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKAAKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
>pdb|2B4X|L Chain L, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 55 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 114
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + S +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 115 IHFFFAKLNCRLYRKANKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 172
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + S +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKANKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ S +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKAQKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ S +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKAQKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
>pdb|2H4Q|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Cleaved Conformation
Length = 382
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSP 86
+D N+ FSP SI L+L +KG T ++ L + + +++ EL+ A P
Sbjct: 65 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFEQAENIHSGFKELLT---AFNKP 121
Query: 87 SGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQT 129
L AN ++++K+ +L T+ Q+ YKA +V+F+T
Sbjct: 122 RNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKT 164
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + + +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKANKAS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + + +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKANKAS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + + +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKANKAS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 29 SANVDFAFSLYKQLVL-KAPDKNVIFSPPSISTALAFLSLGAHNTTLTEILKGLKFNLTE 87
Query: 64 KSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASN 123
S+ +++ L+ + S +LS+ N +++ + LSL + F + +Y + +
Sbjct: 88 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 144
Query: 124 QVDFQ 128
DFQ
Sbjct: 145 ATDFQ 149
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + + +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKANKAS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 70 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 129
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + + +L AN ++ DKSL+ T++ + + VY A +DF+
Sbjct: 130 IHFFFAKLNCRLYRKANKAS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 187
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 9 SANVDFAFSLYKQLVL-KAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTE 67
Query: 64 KSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASN 123
S+ +++ L+ + S +LS+ N +++ + LSL + F + +Y + +
Sbjct: 68 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 124
Query: 124 QVDFQ 128
DFQ
Sbjct: 125 ATDFQ 129
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 9 SANVDFAFSLYKQLVL-KAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTE 67
Query: 64 KSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASN 123
S+ +++ L+ + S +LS+ N +++ + LSL + F + +Y + +
Sbjct: 68 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 124
Query: 124 QVDFQ 128
DFQ
Sbjct: 125 ATDFQ 129
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 9 SANVDFAFSLYKQLVL-KAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTE 67
Query: 64 KSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASN 123
S+ +++ L+ + S +LS+ N +++ + LSL + F + +Y + +
Sbjct: 68 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 124
Query: 124 QVDFQ 128
DFQ
Sbjct: 125 ATDFQ 129
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 28 SANVDFAFSLYKQLVL-KAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTE 86
Query: 64 KSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASN 123
S+ +++ L+ + S +LS+ N +++ + LSL + F + +Y + +
Sbjct: 87 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 143
Query: 124 QVDFQ 128
DFQ
Sbjct: 144 ATDFQ 148
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 39 SANVDFAFSLYKQLVL-KAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTE 97
Query: 64 KSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASN 123
S+ +++ L+ + S +LS+ N +++ + LSL + F + +Y + +
Sbjct: 98 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 154
Query: 124 QVDFQ 128
DFQ
Sbjct: 155 ATDFQ 159
>pdb|1ATT|A Chain A, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
pdb|1ATT|B Chain B, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
Length = 429
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K+ DQ
Sbjct: 56 ATAFYQHLADSKNNNDNIFLSPLSISTAFAMTKLGACNNTLTQLMEVFKFDTISEKTSDQ 115
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + S L AN ++ DKS++ T++ + + VY A +DF+
Sbjct: 116 IHFFFAKLNCRLYRKANKSS--ELVSANRLFGDKSITFNETYQDISEVVYGAKLQPLDFK 173
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N++FSP SI +++S G+KG T D++L L
Sbjct: 9 NLAEFAFSLYRQLA-HQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI 67
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 68 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 124
Query: 125 VDF 127
V+F
Sbjct: 125 VNF 127
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N++FSP SI +++S G+KG T D++L L
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI 87
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDF 127
V+F
Sbjct: 145 VNF 147
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N++FSP SI +++S G+KG T D++L L
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI 87
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLHTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDF 127
V+F
Sbjct: 145 VNF 147
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N++FSP SI +++S G+KG T D++L L
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI 87
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLHTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDF 127
V+F
Sbjct: 145 VNF 147
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSK---- 64
N + A SL + +A ++ +N+ FSP SI +++S G+KG T D++L L
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI 87
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDF 127
V+F
Sbjct: 145 VNF 147
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSK---- 64
N + A SL + +A ++ +N+ FSP SI +++S G+KG T D++L L
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKGDTHDEILEGLNFNLTEI 87
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLHTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDF 127
V+F
Sbjct: 145 VNF 147
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSD 66
T AL+L KH+A + NL SP SI ++++ GS+G T DQ+ S L+ +
Sbjct: 9 TLFALNLFKHLA-KASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMASVLQFNEVGAAA 67
Query: 67 DQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVD 126
D++++ L + + A +G L N ++ +KS S + + ++ Y + VD
Sbjct: 68 DKIHSSFRSLSSAINAS---TGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVD 124
Query: 127 F-----QTKVKTLSWYTT 139
F + + K SW T
Sbjct: 125 FLECAEEARKKINSWVKT 142
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSK---- 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 10 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 68
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 69 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 125
Query: 125 VDF 127
V+F
Sbjct: 126 VNF 128
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N++FSP SI +++S G+K T D++L L
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNILFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 87
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDF 127
V+F
Sbjct: 145 VNF 147
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 6 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 64
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 65 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 121
Query: 125 VDF 127
V+F
Sbjct: 122 VNF 124
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 18 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 76
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 77 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 133
Query: 125 VDF 127
V+F
Sbjct: 134 VNF 136
>pdb|3T1P|A Chain A, Crystal Structure Of An Alpha-1-Antitrypsin Trimer
Length = 371
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 6 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 64
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 65 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 121
Query: 125 VDF 127
V+F
Sbjct: 122 VNF 124
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 14 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 72
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 73 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 129
Query: 125 VDF 127
V+F
Sbjct: 130 VNF 132
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 14 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 72
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 73 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 129
Query: 125 VDF 127
V+F
Sbjct: 130 VNF 132
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 87
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDF 127
V+F
Sbjct: 145 VNF 147
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSK---- 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 39 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 97
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 98 PEAQIHEGFQELLRTL---NQPDSQLQLTFGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 154
Query: 125 VDF 127
V+F
Sbjct: 155 VNF 157
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 59 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 117
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 118 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 174
Query: 125 VDF 127
V+F
Sbjct: 175 VNF 177
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SK 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 87
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ NG+++ + L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDF 127
V+F
Sbjct: 145 VNF 147
>pdb|2VDX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDY|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
pdb|2VDY|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
Length = 373
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 4 RESISNQTDVALSLTKH-VALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF-- 60
R S D A SL KH VAL+ K N+ SP SI + L+++S G+ G T QLL
Sbjct: 5 RGLASANVDFAFSLYKHLVALSPKK--NIFISPVSISMALAMLSLGTCGHTRAQLLQGLG 62
Query: 61 --LKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVY 118
L +S+ +++ L +FA S +++ N +++D SL L +F + + Y
Sbjct: 63 FNLTERSETEIHQGFQHL-HQLFAKSDTS--LEMTMGNALFLDGSLELLESFSADIKHYY 119
Query: 119 KAASNQVDFQ 128
++ ++FQ
Sbjct: 120 ESEVLAMNFQ 129
>pdb|4BB2|A Chain A, Crystal Structure Of Cleaved Corticosteroid-binding
Globulin In Complex With Progesterone
Length = 340
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 4 RESISNQTDVALSLTKH-VALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF-- 60
R S D A SL KH VAL+ K N+ SP SI + L+++S G+ G T QLL
Sbjct: 6 RGLASANVDFAFSLYKHLVALSPKK--NIFISPVSISMALAMLSLGTCGHTRAQLLQGLG 63
Query: 61 --LKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVY 118
L +S+ +++ L +FA S +++ N +++D SL L +F + + Y
Sbjct: 64 FNLTERSETEIHQGFQHL-HQLFAKSDTS--LEMTMGNALFLDGSLELLESFSADIAHYY 120
Query: 119 KAASNQVDFQ 128
++ ++FQ
Sbjct: 121 ESEVLAMNFQ 130
>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
Length = 407
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL---LSFLKSKSDDQ 68
D+++++ + T +D N++FSP SI + + ++ G++G T ++ + + K+ ++
Sbjct: 25 DLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEE 83
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
+F E +V A S + +AN +++ + F Q++ + AA N VDF
Sbjct: 84 F-SFLKEFSNMVTAKESQY---VMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFS 139
Query: 129 TKVKTLSW 136
V ++
Sbjct: 140 QNVAVANY 147
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSD 66
T AL+L KH+A + NL SP SI ++++ GS+G T DQ+ L+ +
Sbjct: 9 TLFALNLFKHLA-KASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQFNEVGAAA 67
Query: 67 DQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVD 126
D++++ L + + A +G L N ++ +KS S + + ++ Y + VD
Sbjct: 68 DKIHSSFRSLSSAINAS---TGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVD 124
Query: 127 F-----QTKVKTLSWYTT 139
F + + K SW T
Sbjct: 125 FLECAEEARKKINSWVKT 142
>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
Length = 397
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL---LSFLKSKSDDQ 68
D+++++ + T +D N++FSP SI + + ++ G++G T ++ + + K+ ++
Sbjct: 25 DLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEE 83
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
+F E +V A S + +AN +++ + F Q++ + AA N VDF
Sbjct: 84 F-SFLKEFSNMVTAKESQY---VMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFS 139
Query: 129 TKVKTLSW 136
V ++
Sbjct: 140 QNVAVANY 147
>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
pdb|3F02|B Chain B, Cleaved Human Neuroserpin
Length = 359
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL---LSFLKSKSDDQ 68
D+++++ + T +D N++FSP SI + + ++ G++G T ++ + + K+ ++
Sbjct: 25 DLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEE 83
Query: 69 LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
+F E +V A S + +AN +++ + F Q++ + AA N VDF
Sbjct: 84 F-SFLKEFSNMVTAKESQY---VMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFS 139
Query: 129 TKVKTLSW 136
V ++
Sbjct: 140 QNVAVANY 147
>pdb|3OZQ|A Chain A, Crystal Structure Of Serpin48, Which Is A Highly Specific
Serpin In The Insect Tenebrio Molitor
Length = 376
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 16 SLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFL--KSKSDDQLN 70
S+ K V TE +N + SP S LL+L +G +G T + Q+L F+ + K++ +
Sbjct: 21 SVYKEVLKTE--KANFLVSPFSAATLLALAQSGCRGDTAEEIRQVLHFVGDREKAEGAVK 78
Query: 71 TFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTK 130
S+L + L AN +++ + S++ F+++ VY A S VDF K
Sbjct: 79 EVLSKLTNEEYT---------LHTANKIYVKTNFSVREEFQKIAVEVYGAQSENVDFSEK 129
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ 68
N + A SL + +A +N+ FSP SI +++S G+K T D++L +
Sbjct: 5 NLAEFAFSLYRQLA--HQSSTNIFFSPVSIATAFAMLSLGTKADTHDEIL--------EG 54
Query: 69 LNTFASELVAVVFADG---------SPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYK 119
LN +E+ +G P +L+ NG+++ + L L + F + V +Y
Sbjct: 55 LNFNLTEIPEAAIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYH 114
Query: 120 AASNQVDF 127
+ + V+F
Sbjct: 115 SEAFTVNF 122
>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
Length = 336
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF----LKS 63
S++ D L + +A + A N+ FSP SI + L+++S G+ T Q+L L+
Sbjct: 7 SSRRDFTFDLYRALA-SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQK 65
Query: 64 KSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASN 123
S+ +L+ +L+ + P G +LS+ N ++ D + L++TF + +Y A +
Sbjct: 66 SSEKELHRGFQQLLQEL---NQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTF 122
Query: 124 QVDFQ 128
+F+
Sbjct: 123 PTNFR 127
>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
Length = 395
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF----LKS 63
S++ D L + +A + A N+ FSP SI + L+++S G+ T Q+L L+
Sbjct: 32 SSRRDFTFDLYRALA-SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQK 90
Query: 64 KSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASN 123
S+ +L+ +L+ + P G +LS+ N ++ D + L++TF + +Y A +
Sbjct: 91 SSEKELHRGFQQLLQEL---NQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTF 147
Query: 124 QVDFQ 128
+F+
Sbjct: 148 PTNFR 152
>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
Length = 346
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF----LKS 63
S++ D L + +A + A N+ FSP SI + L+++S G+ T Q+L L+
Sbjct: 14 SSRRDFTFDLYRALA-SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQK 72
Query: 64 KSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASN 123
S+ +L+ +L+ + P G +LS+ N ++ D + L++TF + +Y A +
Sbjct: 73 SSEKELHRGFQQLLQEL---NQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTF 129
Query: 124 QVDFQ 128
+F+
Sbjct: 130 PTNFR 134
>pdb|2H4R|A Chain A, Crystal Structure Of Wildtype Ment In The Native
Conformation
Length = 415
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 25/128 (19%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL----------------------KSK 64
+D N+ FSP SI L+L +KG T ++ L + +
Sbjct: 29 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFTEAVRAESSSVARPSRGRPKRRR 88
Query: 65 SD---DQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAA 121
D +Q S ++ A P L AN ++++K+ +L T+ Q+ YKA
Sbjct: 89 MDPEHEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAE 148
Query: 122 SNQVDFQT 129
+V+F+T
Sbjct: 149 PQKVNFKT 156
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSK---- 64
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L
Sbjct: 39 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 97
Query: 65 SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQ 124
+ Q++ EL+ + P +L+ N +++ + L L + F + V +Y + +
Sbjct: 98 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNFLFLSEGLKLVDKFLEDVKKLYHSEAFT 154
Query: 125 VDF 127
V+F
Sbjct: 155 VNF 157
>pdb|2H4P|A Chain A, Crystal Structure Of Wildtype Ment In The Cleaved
Conformation
Length = 394
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 25/128 (19%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL----------------------KSK 64
+D N+ FSP SI L+L +KG T ++ L + +
Sbjct: 49 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFTEAVRAESSSVARPSRGRPKRRR 108
Query: 65 SD---DQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAA 121
D +Q S ++ A P L AN ++++K+ +L T+ Q+ YKA
Sbjct: 109 MDPEHEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAE 168
Query: 122 SNQVDFQT 129
+V+F+T
Sbjct: 169 PQKVNFKT 176
>pdb|4IF8|A Chain A, Structure Of Vaspin
pdb|4IF8|B Chain B, Structure Of Vaspin
Length = 414
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
Query: 1 MDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL--- 57
M +E D+ L K +A N+ SP SI S++ G++ TLD++
Sbjct: 43 MAAKELARQNMDLGFKLLKKLAFYNP-GRNIFLSPLSISTAFSMLCLGAQDSTLDEIKQG 101
Query: 58 LSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNV 117
+F K D F ++ + +LS+ N ++ID+ L + F + N
Sbjct: 102 FNFRKMPEKDLHEGFH----YIIHELTQKTQDLKLSIGNTLFIDQRLQPQRKFLEDAKNF 157
Query: 118 YKAASNQVDFQ 128
Y A + +FQ
Sbjct: 158 YSAETILTNFQ 168
>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
Length = 363
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 10 QTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF----LKSKS 65
+ D L + +A + A N+ FSP SI + L+++S G+ T Q+L L+ S
Sbjct: 2 RRDFTFDLYRALA-SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSS 60
Query: 66 DDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
+ +L+ +L+ + P G +LS+ N ++ D + L++TF + +Y A +
Sbjct: 61 EKELHRGFQQLLQEL---NQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPT 117
Query: 126 DFQ 128
+F+
Sbjct: 118 NFR 120
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 9 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 67
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 68 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 120
Query: 126 DF 127
DF
Sbjct: 121 DF 122
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 71
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 72 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 124
Query: 126 DF 127
DF
Sbjct: 125 DF 126
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 26 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 84
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 85 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 137
Query: 126 DF 127
DF
Sbjct: 138 DF 139
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 71
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 72 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 124
Query: 126 DF 127
DF
Sbjct: 125 DF 126
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 71
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 72 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 124
Query: 126 DF 127
DF
Sbjct: 125 DF 126
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 71
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 72 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 124
Query: 126 DF 127
DF
Sbjct: 125 DF 126
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 17 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 75
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 76 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 128
Query: 126 DF 127
DF
Sbjct: 129 DF 130
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 11 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 69
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 70 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 122
Query: 126 DF 127
DF
Sbjct: 123 DF 124
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 71
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 72 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 124
Query: 126 DF 127
DF
Sbjct: 125 DF 126
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 71
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 72 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 124
Query: 126 DF 127
DF
Sbjct: 125 DF 126
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 71
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 72 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 124
Query: 126 DF 127
DF
Sbjct: 125 DF 126
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 71
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 72 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 124
Query: 126 DF 127
DF
Sbjct: 125 DF 126
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-- 68
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K DD+
Sbjct: 36 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGM 94
Query: 69 ---LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQV 125
L EL+ P +S + +++ + L L F ++++ QV
Sbjct: 95 APALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQV 147
Query: 126 DF 127
DF
Sbjct: 148 DF 149
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 1 MDVRESIS--NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLL 58
+ +RES + TD + + + V + +KD N+VFSP + +L+++ + G T Q+
Sbjct: 1 LPLRESHTAHQATDFGVKVFQQV-VQASKDRNVVFSPYGVSSVLAMLQMTTAGKTRRQIQ 59
Query: 59 SFLKSKSDDQ-----LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQV 113
+ K +++ L + EL+ P +S A+ +++ + L L F
Sbjct: 60 DAMGFKVNEKGTAHALRQLSKELMG-------PWNKNEISTADAIFVQRDLELVQGFMPH 112
Query: 114 VDNVYKAASNQVDF 127
+++ QVDF
Sbjct: 113 FFKLFQTMVKQVDF 126
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 22 ALTEAKDSNLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSKSDDQLNTFASELVA 78
AL + N+ FSP S+ + + AG++G T L Q L F SD L T A L A
Sbjct: 21 ALPSGPEKNVFFSPYSVSTAMGMAFAGARGQTQQELSQGLGF----SDVDL-TDAGVLDA 75
Query: 79 VVFADGSPSGGPR---LSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDF 127
P L VAN I ++L+L N+++ + + + A ++VDF
Sbjct: 76 YTHHTERLKSTPSNSTLDVANAAAIQRTLALLNSYESALQSSFGAELHKVDF 127
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 28 DSNLVFSPSSIHVLLSLISAGSKGPT---------LDQLLSF---LKSKSDDQLNTFASE 75
+ N+++SP SI +LS++ G++ T D++ F L+S+ ++ AS
Sbjct: 25 NENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHAS- 83
Query: 76 LVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQT 129
L ++ PS LS+A+ ++ +++ + + Q + +YK + V FQT
Sbjct: 84 LKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQT 137
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 2 DVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSK-------GPTL 54
DV Q L + + +SN+V SP S+ +LL+LI S T
Sbjct: 12 DVHGPFQGQRQNEFDLMFVKEIFKNHNSNVVLSPFSVKILLTLIYEASDTSFGNAVSNTK 71
Query: 55 DQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVV 114
+L S +++ + D ++ +L+ D L++A ++D + + N ++Q+
Sbjct: 72 RELSSVIQNDNIDHTRSYYKQLLESAQQDNKDYD---LNIATNFFVDDFIEVINKYQQIA 128
Query: 115 DNVYKAASNQVDFQTKVKT 133
+ Y A +V + +T
Sbjct: 129 NTHYHAMLEKVSYSNPTQT 147
>pdb|1HLE|A Chain A, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 345
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 22 ALTEAKDS-NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVV 80
AL E+ + N+ SP SI L++I G++G T Q+ L + + +++ L A +
Sbjct: 19 ALNESDPTGNIFISPLSISSALAMIFLGTRGNTAAQVSKALYFDTVEDIHSRFQSLNADI 78
Query: 81 FADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
G+P L +AN ++ +K+ + F +Y A VDFQ
Sbjct: 79 NKPGAPY---ILKLANRLYGEKTYNFLADFLASTQKMYGAELASVDFQ 123
>pdb|2V95|A Chain A, Struture Of Corticosteroid-Binding Globulin In Complex
With Cortisol
Length = 371
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 12 DVALSLTKH-VALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF-LKSKSDDQL 69
D A +L + VAL D N + SP SI + L+++S GS Q L F L S+ ++
Sbjct: 15 DFAFNLYQRLVALN--PDKNTLISPVSISMALAMVSLGSAQTQSLQSLGFNLTETSEAEI 72
Query: 70 NTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
+ L ++ G +++ N +++ + L LK++F V Y++ + +DF+
Sbjct: 73 HQSFQYLNYLL---KQSDTGLEMNMGNAMFLLQKLKLKDSFLADVKQYYESEALAIDFE 128
>pdb|2CEO|A Chain A, Thyroxine-Binding Globulin Complex With Thyroxine
pdb|2CEO|B Chain B, Thyroxine-Binding Globulin Complex With Thyroxine
Length = 379
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-SKSDDQLN 70
D A +L + + E D N+ FSP SI L ++S G+ T +++ L + +D +
Sbjct: 12 DFAFNLYRRFTV-ETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV 70
Query: 71 TFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDF 127
++ + P L + N ++I K L F V +Y+ DF
Sbjct: 71 EIQHGFQHLICSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDF 127
>pdb|2RIV|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Human
Thyroxine Binding Globulin
pdb|2XN3|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Mefenamic Acid
Length = 343
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-SKSDDQLN 70
D A +L + + E D N+ FSP SI L ++S G+ T +++ L + +D +
Sbjct: 16 DFAFNLYRRFTV-ETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV 74
Query: 71 TFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDF 127
++ + P L + N ++I K L F V +Y+ DF
Sbjct: 75 EIQHGFQHLICSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDF 131
>pdb|3F1S|A Chain A, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 385
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MDVRESISNQT-DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL 57
M R+ ++ +T + SL + +++ D N+VFSP + + ++ + G+ GPT Q+
Sbjct: 10 MASRQQLAKETSNFGFSLLRKISMRH--DGNMVFSPFGMSLAMTGLMLGATGPTETQI 65
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MDVRESISNQT-DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL 57
M R+ ++ +T + SL + +++ D N+VFSP + + ++ + G+ GPT Q+
Sbjct: 48 MASRQQLAKETSNFGFSLLRKISMRH--DGNMVFSPFGMSLAMTGLMLGATGPTETQI 103
>pdb|2RIW|A Chain A, The Reactive Loop Cleaved Human Thyroxine Binding Globulin
Complexed With Thyroxine
Length = 338
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-SKSDDQLN 70
D A +L + + E D N+ FSP SI L ++S G+ T +++ L + +D +
Sbjct: 11 DFAFNLYRRFTV-ETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV 69
Query: 71 TFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDF 127
++ + P L + N ++I K L F V +Y+ DF
Sbjct: 70 EIQHGFQHLICSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDF 126
>pdb|2XN6|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein
Length = 350
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-SKSDDQLN 70
D A +L + + E D N+ FSP SI L ++S G+ T +++ L + +D +
Sbjct: 17 DFAFNLYRRFTV-ETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV 75
Query: 71 TFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDF 127
++ + P L + N ++I K L F V +Y+ DF
Sbjct: 76 EIQHGFQHLICSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDF 132
>pdb|2XN5|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Furosemide
pdb|2XN7|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein (T405-Cf)
Length = 350
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-SKSDDQLN 70
D A +L + + E D N+ FSP SI L ++S G+ T +++ L + +D +
Sbjct: 17 DFAFNLYRRFTV-ETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV 75
Query: 71 TFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDF 127
++ + P L + N ++I K L F V +Y+ DF
Sbjct: 76 EIQHGFQHLICSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDF 132
>pdb|3H5C|A Chain A, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 423
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MDVRESISNQT-DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL 57
M R+ ++ +T + SL + +++ D N+VFSP + + ++ + G+ GPT Q+
Sbjct: 48 MASRQQLAKETSNFGFSLLRKISMRH--DGNMVFSPFGMSLAMTGLMLGATGPTETQI 103
>pdb|1M93|A Chain A, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 55
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSD 66
K N+ SP SI +L+++ G+ G T +QL +++ ++D
Sbjct: 12 KGENVFISPPSISSVLTILYYGANGSTAEQLSKYVEKEAD 51
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSD 66
K N+ SP SI +L+++ G+ G T +QL +++ ++D
Sbjct: 12 KGENVFISPPSISSVLTILYYGANGSTAEQLSKYVEKEAD 51
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSD 66
K N+ SP SI +L+++ G+ G T +QL +++ ++D
Sbjct: 12 KGENVFISPPSISSVLTILYYGANGSTAEQLSKYVEKEAD 51
>pdb|1XU8|A Chain A, The 2.8 A Structure Of A Tumour Suppressing Serpin
pdb|1XU8|B Chain B, The 2.8 A Structure Of A Tumour Suppressing Serpin
Length = 380
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 31/117 (26%)
Query: 30 NLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSK----------SD-DQLNTFASE 75
N++FSP + LSL G+KG T + Q+L F K SD ++L++F S
Sbjct: 32 NVLFSPICLSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFQTVTSDVNKLSSFYS- 90
Query: 76 LVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKVK 132
L + +++DKSL+L F Y VDF+ K++
Sbjct: 91 ----------------LKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLE 131
>pdb|1XQG|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQG|B Chain B, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQJ|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group I 4 2 2
Length = 389
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 31/117 (26%)
Query: 30 NLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSK----------SD-DQLNTFASE 75
N++FSP ++ LSL G+KG T + Q+L F K SD ++L++F S
Sbjct: 41 NVLFSPIALSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFQTVTSDVNKLSSFYS- 99
Query: 76 LVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKVK 132
L + +++DKSL+L F Y VDF+ K++
Sbjct: 100 ----------------LKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLE 140
>pdb|1WZ9|A Chain A, The 2.1 A Structure Of A Tumour Suppressing Serpin
pdb|1WZ9|B Chain B, The 2.1 A Structure Of A Tumour Suppressing Serpin
Length = 375
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 31/117 (26%)
Query: 30 NLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSK----------SD-DQLNTFASE 75
N++FSP + LSL G+KG T + Q+L F K SD ++L++F S
Sbjct: 27 NVLFSPICLSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFQTVTSDVNKLSSFYS- 85
Query: 76 LVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKVK 132
L + +++DKSL+L F Y VDF+ K++
Sbjct: 86 ----------------LKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLE 126
>pdb|2ZV6|A Chain A, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|B Chain B, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|C Chain C, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
Length = 401
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 24/145 (16%)
Query: 23 LTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFA 82
++K++N+ +SP SI L ++ G+K T Q+ L DQ+ + A
Sbjct: 30 FRKSKENNIFYSPISITSALGMVLLGAKDNTAQQIKKVLHF---DQVTENTTGKAATYHV 86
Query: 83 DGS----------------PSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVD 126
D S + L +AN ++ +K+ + + Y+ + VD
Sbjct: 87 DRSGNVHHQFQKLLTEFNKSTDAYELKIANKLFGEKTYLFLQEYLDAIKKFYQTSVESVD 146
Query: 127 F-----QTKVKTLSWYTTVIHEGLK 146
F +++ K SW + +E +K
Sbjct: 147 FANAPEESRKKINSWVESQTNEKIK 171
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 29 SNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSG 88
SNLV SP S+ + LS ++ G++ TL L L + L L++ + + P G
Sbjct: 43 SNLVLSPLSVALALSHLALGAQNQTLHSLHRVLHMNTGSCL----PHLLSHFYQNLGP-G 97
Query: 89 GPRLSVANGVWIDKSLSLKNTFKQVVDNVYKA 120
RL A +++ K +K+ F + + ++ A
Sbjct: 98 TIRL--AARIYLQKGFPIKDDFLEQSERLFGA 127
>pdb|2HTD|A Chain A, Crystal Structure Of A Putative Pyridoxamine
5'-Phosphate Oxidase (Ldb0262) From Lactobacillus
Delbrueckii Subsp. At 1.60 A Resolution
pdb|2HTD|B Chain B, Crystal Structure Of A Putative Pyridoxamine
5'-Phosphate Oxidase (Ldb0262) From Lactobacillus
Delbrueckii Subsp. At 1.60 A Resolution
Length = 140
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 65 SDDQLNTFASELV--AVVFADGSPSGGPRLS 93
+++Q+N F + LV A V ADG+P GP+ S
Sbjct: 29 TEEQVNLFKNNLVYLATVDADGNPQVGPKGS 59
>pdb|2I22|A Chain A, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|B Chain B, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|C Chain C, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|D Chain D, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I2W|A Chain A, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|B Chain B, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|C Chain C, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|D Chain D, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
Length = 212
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 55 DQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANG 97
+ L +FLK D N A + AV+ AD +GG LS NG
Sbjct: 35 ETLANFLK----DDANIHAIQRAAVLLADSFKAGGKVLSCGNG 73
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 30 NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGG 89
N+V SP I +L ++ G+ G T QL ++ +N L + A S
Sbjct: 31 NIVISPHGIASVLGMLQLGADGRTKKQLAMVMRYG----VNGVGKILKKINKAIVSKKNK 86
Query: 90 PRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ 128
++VAN V++ + ++ F +V++ V+F+
Sbjct: 87 DIVTVANAVFVKNASEIEVPFVTRNKDVFQCEVRNVNFE 125
>pdb|1MTP|A Chain A, The X-Ray Crystal Structure Of A Serpin From A
Thermophilic Prokaryote
Length = 323
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 15 LSLTKHVALTEA-KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFA 73
+L H L EA D +++SP S+ L +++AG++ + +++ L T
Sbjct: 13 FALHLHRRLAEAVPDGEVIWSPYSVACALGVLAAGAR--------ATTRTELTTLLGTDP 64
Query: 74 SELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQT 129
+ L+A + D + + P L+ +W+ + ++++F+ + + + DF+T
Sbjct: 65 APLLAAL--DRAVTDSPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRT 118
>pdb|4AJT|A Chain A, The Cystal Structure Of Mouse Protein-Z Dependent Protease
Inhibitor(Mzpi)
Length = 427
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 5 ESISNQTD-VALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL 57
+ +SN+T +L + +++ D N++FSP + V + + G+KG T Q+
Sbjct: 56 QQLSNETSSFGFNLLRKISMRH--DGNVIFSPFGLSVAMVNLMLGTKGETKVQI 107
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 35 PSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDD 67
P+++H+ L + P L+ LL++L+ KS D
Sbjct: 166 PTAMHIATVLATKQQLIPALNNLLTYLQDKSKD 198
>pdb|1SNG|A Chain A, Structure Of A Thermophilic Serpin In The Native State
Length = 370
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 15 LSLTKHVALTEA-KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFA 73
+L H L EA D +++SP S+ L +++AG++ + +++ L T
Sbjct: 17 FALHLHRRLAEAVPDGEVIWSPYSVAXALGVLAAGAR--------ATTRTELTTLLGTDP 68
Query: 74 SELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQT 129
+ L+A + D + + P L+ +W+ + ++++F+ + + + DF+T
Sbjct: 69 APLLAAL--DRAVTDSPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRT 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,869,548
Number of Sequences: 62578
Number of extensions: 135448
Number of successful extensions: 440
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 106
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)