Query 032062
Match_columns 148
No_of_seqs 166 out of 1274
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02378 glutathione S-transfe 100.0 1.8E-32 3.9E-37 197.2 15.4 148 1-148 1-149 (213)
2 PLN02817 glutathione dehydroge 100.0 1.4E-30 3.1E-35 192.5 13.9 147 2-148 55-201 (265)
3 TIGR00862 O-ClC intracellular 100.0 8E-29 1.7E-33 180.1 16.1 146 2-148 2-170 (236)
4 cd03061 GST_N_CLIC GST_N famil 100.0 4.7E-28 1E-32 151.3 10.8 85 2-87 5-89 (91)
5 KOG0406 Glutathione S-transfer 100.0 2E-27 4.4E-32 169.9 13.0 135 14-148 12-159 (231)
6 KOG1422 Intracellular Cl- chan 99.9 3.1E-26 6.7E-31 159.6 15.4 147 1-147 2-154 (221)
7 PRK09481 sspA stringent starva 99.9 2.7E-26 5.8E-31 164.8 13.9 130 18-148 17-156 (211)
8 KOG0868 Glutathione S-transfer 99.9 1E-24 2.3E-29 148.6 11.8 131 17-147 11-162 (217)
9 PRK15113 glutathione S-transfe 99.9 4.9E-24 1.1E-28 153.4 13.8 129 19-148 15-166 (214)
10 PLN02473 glutathione S-transfe 99.9 5.9E-23 1.3E-27 147.5 14.2 129 19-148 10-164 (214)
11 TIGR01262 maiA maleylacetoacet 99.9 5.8E-23 1.3E-27 147.0 11.3 133 16-148 4-160 (210)
12 COG0625 Gst Glutathione S-tran 99.9 2.1E-22 4.5E-27 144.5 13.2 129 18-147 7-159 (211)
13 PLN02395 glutathione S-transfe 99.9 4.5E-22 9.8E-27 142.9 14.3 126 22-148 12-163 (215)
14 PRK10357 putative glutathione 99.9 8.4E-22 1.8E-26 140.3 13.2 131 16-148 5-153 (202)
15 PRK10542 glutathionine S-trans 99.9 5.1E-22 1.1E-26 141.2 11.8 127 21-148 9-153 (201)
16 PF13417 GST_N_3: Glutathione 99.9 3.9E-22 8.5E-27 121.1 7.9 71 17-87 4-74 (75)
17 PRK13972 GSH-dependent disulfi 99.9 1.1E-21 2.5E-26 141.1 11.4 126 20-148 9-161 (215)
18 PRK10387 glutaredoxin 2; Provi 99.9 1.1E-20 2.4E-25 135.2 11.8 128 17-148 6-170 (210)
19 PRK11752 putative S-transferas 99.9 1.7E-20 3.7E-25 139.0 13.2 127 19-148 51-207 (264)
20 TIGR02182 GRXB Glutaredoxin, G 99.9 2.6E-20 5.6E-25 133.7 13.7 129 16-148 4-169 (209)
21 cd03059 GST_N_SspA GST_N famil 99.8 1.9E-20 4.1E-25 112.8 8.6 68 17-84 6-73 (73)
22 PTZ00057 glutathione s-transfe 99.8 2.8E-20 6E-25 133.1 10.7 125 19-148 12-154 (205)
23 PF13409 GST_N_2: Glutathione 99.8 2.2E-20 4.8E-25 112.0 7.8 65 19-83 1-70 (70)
24 cd03058 GST_N_Tau GST_N family 99.8 4.7E-20 1E-24 111.6 8.6 68 17-84 6-74 (74)
25 KOG0867 Glutathione S-transfer 99.8 1.6E-19 3.5E-24 131.0 12.7 129 18-147 9-161 (226)
26 cd03052 GST_N_GDAP1 GST_N fami 99.8 4.8E-20 1E-24 111.4 8.1 64 18-81 7-73 (73)
27 cd03060 GST_N_Omega_like GST_N 99.8 5.7E-20 1.2E-24 110.4 8.1 65 16-80 5-70 (71)
28 cd03038 GST_N_etherase_LigE GS 99.8 1.2E-19 2.6E-24 112.4 8.6 80 3-85 1-84 (84)
29 cd03041 GST_N_2GST_N GST_N fam 99.8 1.8E-19 4E-24 109.9 8.0 68 17-84 7-77 (77)
30 cd03045 GST_N_Delta_Epsilon GS 99.8 2.8E-19 6.1E-24 108.0 8.0 66 17-82 6-74 (74)
31 cd03053 GST_N_Phi GST_N family 99.8 6.2E-19 1.3E-23 107.0 9.0 66 18-83 8-76 (76)
32 cd03050 GST_N_Theta GST_N fami 99.8 8.5E-19 1.8E-23 106.6 8.9 67 18-84 7-76 (76)
33 cd03076 GST_N_Pi GST_N family, 99.8 5.7E-19 1.2E-23 106.6 7.3 64 19-82 9-72 (73)
34 cd03043 GST_N_1 GST_N family, 99.8 1.1E-18 2.4E-23 105.4 8.0 65 17-81 7-73 (73)
35 cd03044 GST_N_EF1Bgamma GST_N 99.8 1E-18 2.2E-23 106.0 7.6 67 16-82 5-74 (75)
36 cd03048 GST_N_Ure2p_like GST_N 99.8 1.5E-18 3.3E-23 106.6 8.4 66 20-85 9-80 (81)
37 cd03055 GST_N_Omega GST_N fami 99.8 1.6E-18 3.4E-23 108.6 8.5 65 17-81 24-89 (89)
38 cd03056 GST_N_4 GST_N family, 99.8 2E-18 4.4E-23 103.8 7.8 65 17-81 6-73 (73)
39 KOG1695 Glutathione S-transfer 99.8 7.3E-18 1.6E-22 119.8 10.7 126 20-148 12-154 (206)
40 cd03046 GST_N_GTT1_like GST_N 99.8 4.9E-18 1.1E-22 103.0 8.3 65 21-85 9-76 (76)
41 cd03049 GST_N_3 GST_N family, 99.8 3.1E-18 6.8E-23 103.2 7.3 65 17-81 6-73 (73)
42 cd03037 GST_N_GRX2 GST_N famil 99.8 4.8E-18 1E-22 101.9 7.5 66 16-82 5-71 (71)
43 cd03047 GST_N_2 GST_N family, 99.8 5.2E-18 1.1E-22 102.3 7.7 64 18-81 7-73 (73)
44 cd03080 GST_N_Metaxin_like GST 99.8 1.2E-17 2.6E-22 101.3 9.0 73 4-85 3-75 (75)
45 cd03057 GST_N_Beta GST_N famil 99.7 7.7E-18 1.7E-22 102.5 8.1 64 22-85 10-77 (77)
46 cd03051 GST_N_GTT2_like GST_N 99.7 5E-18 1.1E-22 102.2 7.1 65 17-81 6-74 (74)
47 cd03042 GST_N_Zeta GST_N famil 99.7 1E-17 2.2E-22 100.8 7.8 65 17-81 6-73 (73)
48 cd03039 GST_N_Sigma_like GST_N 99.7 5E-18 1.1E-22 102.1 6.3 65 18-82 7-72 (72)
49 cd03075 GST_N_Mu GST_N family, 99.7 1.1E-17 2.4E-22 103.2 7.5 66 19-84 8-82 (82)
50 PF02798 GST_N: Glutathione S- 99.7 1.8E-17 4E-22 100.8 8.1 63 20-82 9-76 (76)
51 cd03040 GST_N_mPGES2 GST_N fam 99.7 3.9E-17 8.4E-22 99.4 7.8 64 19-84 9-76 (77)
52 cd03054 GST_N_Metaxin GST_N fa 99.7 1.9E-16 4.1E-21 95.2 8.6 71 4-83 2-72 (72)
53 cd03077 GST_N_Alpha GST_N fami 99.7 1.5E-16 3.2E-21 97.4 8.2 64 19-85 9-77 (79)
54 cd00570 GST_N_family Glutathio 99.7 6.5E-16 1.4E-20 91.2 7.7 65 17-81 6-71 (71)
55 cd03079 GST_N_Metaxin2 GST_N f 99.6 1.6E-14 3.6E-19 86.9 7.4 72 5-83 3-74 (74)
56 PLN02907 glutamate-tRNA ligase 99.5 2.3E-13 5E-18 112.4 12.0 116 1-148 1-119 (722)
57 TIGR02190 GlrX-dom Glutaredoxi 99.4 1.7E-12 3.8E-17 79.3 7.5 71 2-81 9-79 (79)
58 KOG4420 Uncharacterized conser 99.4 5.6E-13 1.2E-17 96.4 3.9 78 15-92 27-111 (325)
59 COG2999 GrxB Glutaredoxin 2 [P 99.3 5.9E-12 1.3E-16 86.4 7.9 71 15-87 4-76 (215)
60 PRK10638 glutaredoxin 3; Provi 99.3 4.7E-11 1E-15 73.6 8.0 71 3-82 4-75 (83)
61 cd03029 GRX_hybridPRX5 Glutare 99.2 7.1E-11 1.5E-15 70.8 7.8 70 3-81 3-72 (72)
62 cd03078 GST_N_Metaxin1_like GS 99.1 4.7E-10 1E-14 67.5 8.3 60 17-83 13-72 (73)
63 KOG4244 Failed axon connection 99.1 2.4E-09 5.2E-14 77.9 11.5 76 14-96 55-130 (281)
64 PRK10329 glutaredoxin-like pro 99.0 1.2E-09 2.5E-14 67.1 6.6 62 1-71 1-62 (81)
65 KOG3029 Glutathione S-transfer 99.0 1.2E-09 2.7E-14 80.1 6.8 62 18-81 97-158 (370)
66 COG0695 GrxC Glutaredoxin and 99.0 5.6E-09 1.2E-13 63.9 7.8 70 1-79 1-73 (80)
67 KOG2903 Predicted glutathione 99.0 8.1E-09 1.7E-13 75.1 9.7 129 19-147 45-233 (319)
68 cd02066 GRX_family Glutaredoxi 98.9 1.2E-08 2.6E-13 60.1 7.4 61 19-79 9-70 (72)
69 cd03027 GRX_DEP Glutaredoxin ( 98.9 1.1E-08 2.4E-13 61.3 7.3 60 18-77 9-69 (73)
70 PRK11200 grxA glutaredoxin 1; 98.9 1.8E-08 3.9E-13 62.2 8.1 76 1-85 1-84 (85)
71 COG0435 ECM4 Predicted glutath 98.9 8E-09 1.7E-13 75.7 6.7 128 19-147 59-233 (324)
72 TIGR02196 GlrX_YruB Glutaredox 98.8 2.6E-08 5.7E-13 59.0 7.0 63 18-80 8-73 (74)
73 cd03418 GRX_GRXb_1_3_like Glut 98.8 3.7E-08 8.1E-13 59.1 7.4 63 19-81 9-73 (75)
74 cd02976 NrdH NrdH-redoxin (Nrd 98.8 3.2E-08 7E-13 58.5 6.4 55 18-72 8-63 (73)
75 TIGR02181 GRX_bact Glutaredoxi 98.7 7.4E-08 1.6E-12 58.5 7.2 65 18-82 7-72 (79)
76 TIGR02194 GlrX_NrdH Glutaredox 98.7 6.2E-08 1.4E-12 57.9 5.5 51 18-68 7-57 (72)
77 TIGR02183 GRXA Glutaredoxin, G 98.6 3.1E-07 6.8E-12 56.9 7.9 67 19-85 9-83 (86)
78 TIGR02189 GlrX-like_plant Glut 98.6 5.2E-07 1.1E-11 57.4 8.8 62 18-79 16-81 (99)
79 cd03028 GRX_PICOT_like Glutare 98.6 5.4E-07 1.2E-11 56.2 8.4 76 2-81 9-85 (90)
80 PF00462 Glutaredoxin: Glutare 98.6 1E-07 2.3E-12 54.8 4.4 53 18-70 7-60 (60)
81 TIGR00365 monothiol glutaredox 98.6 7.9E-07 1.7E-11 56.3 8.3 74 3-80 14-88 (97)
82 cd03419 GRX_GRXh_1_2_like Glut 98.5 1.3E-06 2.9E-11 53.0 8.6 64 19-82 9-76 (82)
83 PHA03050 glutaredoxin; Provisi 98.5 1.4E-06 3.1E-11 56.3 8.4 61 18-78 21-88 (108)
84 TIGR02200 GlrX_actino Glutared 98.5 5.4E-07 1.2E-11 54.0 5.7 63 18-80 8-75 (77)
85 TIGR02180 GRX_euk Glutaredoxin 98.4 5.4E-06 1.2E-10 50.4 8.5 65 18-82 7-77 (84)
86 PRK10824 glutaredoxin-4; Provi 98.2 1.4E-05 3.1E-10 52.1 8.1 74 3-80 17-91 (115)
87 PF10568 Tom37: Outer mitochon 98.1 1.6E-05 3.4E-10 47.6 6.5 55 19-80 13-71 (72)
88 PRK12759 bifunctional gluaredo 98.0 3.7E-05 8E-10 60.6 8.0 68 2-78 3-79 (410)
89 KOG1752 Glutaredoxin and relat 97.8 0.00028 6E-09 45.2 8.7 64 18-81 22-89 (104)
90 PTZ00062 glutaredoxin; Provisi 97.7 0.00026 5.6E-09 50.7 8.2 74 3-80 115-189 (204)
91 cd03031 GRX_GRX_like Glutaredo 97.7 0.00037 8.1E-09 47.4 8.2 62 19-80 15-81 (147)
92 KOG3027 Mitochondrial outer me 97.6 0.0015 3.3E-08 46.5 10.4 74 17-96 31-105 (257)
93 cd03201 GST_C_DHAR GST_C famil 97.3 0.00072 1.6E-08 44.4 5.4 57 92-148 4-60 (121)
94 cd02973 TRX_GRX_like Thioredox 97.3 0.0014 3E-08 38.0 5.9 50 19-71 10-64 (67)
95 cd03030 GRX_SH3BGR Glutaredoxi 96.8 0.0066 1.4E-07 38.0 6.2 57 22-78 18-79 (92)
96 PF11287 DUF3088: Protein of u 96.8 0.02 4.3E-07 36.9 8.3 80 7-86 8-109 (112)
97 COG0278 Glutaredoxin-related p 96.6 0.018 3.9E-07 36.3 7.0 76 2-81 16-93 (105)
98 PRK01655 spxA transcriptional 96.6 0.0051 1.1E-07 41.0 4.9 34 3-45 2-35 (131)
99 PF13192 Thioredoxin_3: Thiore 96.5 0.01 2.2E-07 35.6 5.4 50 20-73 10-63 (76)
100 TIGR00412 redox_disulf_2 small 96.5 0.024 5.2E-07 33.9 6.9 49 19-71 9-61 (76)
101 KOG3028 Translocase of outer m 96.5 0.19 4.2E-06 38.1 12.8 58 19-83 16-74 (313)
102 cd03198 GST_C_CLIC GST_C famil 96.4 0.012 2.6E-07 39.4 5.6 42 95-136 4-47 (134)
103 cd03036 ArsC_like Arsenate Red 96.4 0.0066 1.4E-07 39.2 4.2 29 18-46 7-35 (111)
104 cd03032 ArsC_Spx Arsenate Redu 96.3 0.011 2.4E-07 38.4 5.0 34 3-45 2-35 (115)
105 cd02977 ArsC_family Arsenate R 96.3 0.0096 2.1E-07 37.9 4.6 28 18-45 7-34 (105)
106 PRK12559 transcriptional regul 96.2 0.016 3.5E-07 38.6 5.2 35 3-46 2-36 (131)
107 PRK13344 spxA transcriptional 95.9 0.025 5.5E-07 37.7 5.2 28 19-46 9-36 (132)
108 cd03200 GST_C_JTV1 GST_C famil 95.8 0.023 4.9E-07 35.6 4.5 62 77-148 1-64 (96)
109 cd01659 TRX_superfamily Thiore 95.6 0.032 6.8E-07 30.4 4.1 48 18-65 7-59 (69)
110 TIGR01617 arsC_related transcr 95.5 0.023 5E-07 37.0 3.8 28 18-45 7-34 (117)
111 PF05768 DUF836: Glutaredoxin- 95.4 0.095 2.1E-06 31.7 6.2 54 3-67 2-57 (81)
112 PF13410 GST_C_2: Glutathione 95.4 0.032 7E-07 32.3 3.8 31 117-148 5-35 (69)
113 PF04908 SH3BGR: SH3-binding, 94.9 0.12 2.6E-06 32.8 5.6 74 1-77 1-84 (99)
114 TIGR00411 redox_disulf_1 small 94.6 0.26 5.7E-06 29.2 6.5 49 19-68 10-62 (82)
115 cd03026 AhpF_NTD_C TRX-GRX-lik 94.5 0.26 5.6E-06 30.4 6.4 50 19-71 23-77 (89)
116 KOG3425 Uncharacterized conser 94.5 0.44 9.5E-06 31.2 7.4 78 5-82 30-121 (128)
117 COG4545 Glutaredoxin-related p 94.1 0.21 4.5E-06 29.9 4.9 55 17-71 9-77 (85)
118 cd03035 ArsC_Yffb Arsenate Red 94.0 0.14 3.1E-06 32.7 4.5 30 17-46 6-35 (105)
119 cd03184 GST_C_Omega GST_C fami 94.0 0.19 4E-06 32.7 5.2 46 103-148 17-63 (124)
120 cd03190 GST_C_ECM4_like GST_C 93.7 0.13 2.7E-06 34.5 4.1 30 118-148 37-66 (142)
121 cd03210 GST_C_Pi GST_C family, 93.6 0.11 2.3E-06 34.0 3.6 31 118-148 35-67 (126)
122 cd03033 ArsC_15kD Arsenate Red 93.6 0.22 4.8E-06 32.3 4.9 27 19-45 9-35 (113)
123 PF00043 GST_C: Glutathione S- 93.4 0.13 2.9E-06 31.4 3.5 30 118-148 28-57 (95)
124 PF14497 GST_C_3: Glutathione 92.8 0.24 5.1E-06 30.8 4.1 32 117-148 34-66 (99)
125 PHA02125 thioredoxin-like prot 92.5 0.46 9.9E-06 28.1 4.9 45 18-65 8-52 (75)
126 cd03206 GST_C_7 GST_C family, 92.3 0.21 4.5E-06 31.1 3.4 31 117-148 32-62 (100)
127 COG1393 ArsC Arsenate reductas 92.1 0.55 1.2E-05 30.7 5.2 36 1-45 1-36 (117)
128 PF09635 MetRS-N: MetRS-N bind 91.8 0.13 2.9E-06 33.7 2.0 28 59-86 35-64 (122)
129 cd03209 GST_C_Mu GST_C family, 91.3 0.45 9.8E-06 30.7 4.3 29 119-148 36-64 (121)
130 cd00299 GST_C_family Glutathio 91.3 0.33 7.1E-06 29.5 3.4 31 117-148 35-65 (100)
131 cd03180 GST_C_2 GST_C family, 91.2 0.3 6.4E-06 30.5 3.2 29 119-148 44-72 (110)
132 PRK10026 arsenate reductase; P 90.9 0.72 1.6E-05 31.2 4.9 34 3-45 4-37 (141)
133 KOG0911 Glutaredoxin-related p 90.8 1.3 2.9E-05 32.1 6.5 76 2-81 140-216 (227)
134 cd03188 GST_C_Beta GST_C famil 90.8 0.36 7.7E-06 30.4 3.3 29 119-148 44-72 (114)
135 cd03193 GST_C_Metaxin GST_C fa 90.3 0.54 1.2E-05 28.4 3.7 30 118-148 19-48 (88)
136 PRK15317 alkyl hydroperoxide r 90.2 0.31 6.6E-06 39.7 3.2 71 3-83 120-197 (517)
137 TIGR03140 AhpF alkyl hydropero 90.2 0.27 5.9E-06 40.0 2.9 71 3-83 121-198 (515)
138 cd03204 GST_C_GDAP1 GST_C fami 90.1 0.61 1.3E-05 30.1 4.0 31 117-147 28-67 (111)
139 cd03189 GST_C_GTT1_like GST_C 90.1 0.41 9E-06 30.5 3.2 29 119-148 55-83 (119)
140 PF06110 DUF953: Eukaryotic pr 89.7 0.91 2E-05 29.7 4.5 68 7-75 26-107 (119)
141 TIGR03143 AhpF_homolog putativ 89.6 1.1 2.5E-05 36.9 6.1 50 20-72 488-542 (555)
142 PRK10853 putative reductase; P 89.6 0.88 1.9E-05 29.7 4.4 27 19-45 9-35 (118)
143 cd03177 GST_C_Delta_Epsilon GS 89.6 0.47 1E-05 30.3 3.2 32 116-148 36-67 (118)
144 cd03178 GST_C_Ure2p_like GST_C 89.2 0.71 1.5E-05 29.1 3.7 30 118-148 40-69 (113)
145 cd03179 GST_C_1 GST_C family, 88.9 0.7 1.5E-05 28.6 3.5 30 118-148 43-72 (105)
146 cd03187 GST_C_Phi GST_C family 88.8 0.63 1.4E-05 29.5 3.3 29 119-148 46-74 (118)
147 cd03202 GST_C_etherase_LigE GS 88.7 0.76 1.6E-05 30.0 3.7 31 117-148 57-87 (124)
148 cd03186 GST_C_SspA GST_N famil 88.6 0.83 1.8E-05 28.5 3.7 31 117-148 34-64 (107)
149 cd03183 GST_C_Theta GST_C fami 88.5 0.72 1.6E-05 29.8 3.5 30 119-148 46-75 (126)
150 cd03196 GST_C_5 GST_C family, 88.4 0.7 1.5E-05 29.7 3.3 31 117-148 40-70 (115)
151 TIGR01616 nitro_assoc nitrogen 88.2 1.6 3.6E-05 28.8 5.0 27 19-45 10-36 (126)
152 cd03191 GST_C_Zeta GST_C famil 88.1 0.75 1.6E-05 29.4 3.4 29 120-148 46-75 (121)
153 cd03182 GST_C_GTT2_like GST_C 88.0 0.9 2E-05 28.8 3.7 30 118-148 49-78 (117)
154 cd03207 GST_C_8 GST_C family, 87.9 0.79 1.7E-05 28.4 3.3 31 117-148 29-59 (103)
155 cd03185 GST_C_Tau GST_C family 87.8 0.94 2E-05 29.1 3.7 31 117-148 34-64 (126)
156 TIGR00014 arsC arsenate reduct 87.2 1.6 3.4E-05 28.2 4.4 27 19-45 8-34 (114)
157 cd03203 GST_C_Lambda GST_C fam 86.7 0.78 1.7E-05 29.7 2.8 29 120-148 32-61 (120)
158 cd03211 GST_C_Metaxin2 GST_C f 85.5 1.6 3.4E-05 28.7 3.8 30 117-147 56-85 (126)
159 cd03208 GST_C_Alpha GST_C fami 85.1 1.1 2.4E-05 29.8 3.0 27 122-148 43-70 (137)
160 cd03034 ArsC_ArsC Arsenate Red 84.6 2.6 5.6E-05 27.1 4.5 26 19-44 8-33 (112)
161 cd03192 GST_C_Sigma_like GST_C 84.2 1.3 2.9E-05 27.4 2.9 30 119-148 40-70 (104)
162 cd03212 GST_C_Metaxin1_3 GST_C 83.4 2.1 4.5E-05 28.6 3.7 31 117-148 63-93 (137)
163 cd03181 GST_C_EFB1gamma GST_C 83.0 2 4.3E-05 27.4 3.4 30 118-148 40-69 (123)
164 TIGR01295 PedC_BrcD bacterioci 80.9 7.6 0.00016 25.3 5.7 52 18-69 33-102 (122)
165 cd03195 GST_C_4 GST_C family, 80.3 3.3 7.2E-05 26.4 3.8 30 117-147 41-70 (114)
166 cd03194 GST_C_3 GST_C family, 79.7 4.2 9E-05 26.0 4.1 31 117-148 40-72 (114)
167 cd02975 PfPDO_like_N Pyrococcu 79.7 4.9 0.00011 25.7 4.4 47 18-65 32-81 (113)
168 PF03960 ArsC: ArsC family; I 77.7 2.6 5.5E-05 26.9 2.6 28 17-44 3-30 (110)
169 cd02952 TRP14_like Human TRX-r 71.0 26 0.00056 22.8 7.9 69 3-72 24-105 (119)
170 cd02953 DsbDgamma DsbD gamma f 69.8 17 0.00036 22.4 4.9 46 18-64 21-77 (104)
171 KOG2824 Glutaredoxin-related p 67.9 12 0.00026 28.2 4.4 57 23-79 150-211 (281)
172 PHA02278 thioredoxin-like prot 64.7 33 0.00071 21.6 6.3 52 19-70 25-85 (103)
173 cd02949 TRX_NTR TRX domain, no 62.6 32 0.0007 20.9 5.3 52 18-70 23-80 (97)
174 PF04134 DUF393: Protein of un 61.0 39 0.00084 21.2 5.6 65 18-83 5-77 (114)
175 cd02951 SoxW SoxW family; SoxW 59.1 26 0.00056 22.4 4.4 46 19-64 25-89 (125)
176 cd03205 GST_C_6 GST_C family, 58.1 19 0.00041 21.9 3.5 26 118-147 37-62 (98)
177 cd02989 Phd_like_TxnDC9 Phosdu 56.2 50 0.0011 21.0 6.2 54 18-72 32-90 (113)
178 PHA03158 hypothetical protein; 54.8 77 0.0017 22.7 6.4 65 67-135 207-271 (273)
179 COG2761 FrnE Predicted dithiol 53.0 41 0.00089 24.6 4.9 27 1-34 4-34 (225)
180 PRK09266 hypothetical protein; 51.9 22 0.00048 26.3 3.5 57 29-85 200-259 (266)
181 cd02947 TRX_family TRX family; 51.8 44 0.00096 19.1 6.0 47 19-68 21-74 (93)
182 TIGR02681 phage_pRha phage reg 50.7 19 0.00041 23.1 2.6 26 60-85 2-28 (108)
183 cd02954 DIM1 Dim1 family; Dim1 50.7 67 0.0014 20.8 5.3 52 18-70 24-81 (114)
184 cd02955 SSP411 TRX domain, SSP 49.6 72 0.0016 20.8 6.1 56 18-73 25-97 (124)
185 TIGR02187 GlrX_arch Glutaredox 48.8 18 0.00039 25.9 2.6 47 18-65 143-192 (215)
186 cd02959 ERp19 Endoplasmic reti 47.8 72 0.0016 20.4 5.4 53 18-71 29-91 (117)
187 PF00085 Thioredoxin: Thioredo 43.6 70 0.0015 19.0 8.3 62 19-82 28-102 (103)
188 PF00731 AIRC: AIR carboxylase 39.6 44 0.00096 22.8 3.2 32 20-51 13-44 (150)
189 cd02984 TRX_PICOT TRX domain, 38.8 85 0.0018 18.6 6.0 52 18-70 24-81 (97)
190 cd02957 Phd_like Phosducin (Ph 38.4 97 0.0021 19.4 4.6 52 19-72 35-91 (113)
191 PF01323 DSBA: DSBA-like thior 38.4 51 0.0011 22.5 3.5 27 19-45 9-40 (193)
192 cd03020 DsbA_DsbC_DsbG DsbA fa 37.9 81 0.0018 22.0 4.5 25 19-43 88-114 (197)
193 cd02985 TRX_CDSP32 TRX family, 37.9 97 0.0021 19.0 5.6 52 19-70 26-84 (103)
194 cd02993 PDI_a_APS_reductase PD 37.7 1E+02 0.0022 19.1 5.4 47 18-64 31-83 (109)
195 cd02970 PRX_like2 Peroxiredoxi 37.0 41 0.00089 21.8 2.8 50 18-68 34-90 (149)
196 cd02963 TRX_DnaJ TRX domain, D 36.9 1.1E+02 0.0023 19.2 5.9 51 18-69 34-91 (111)
197 PF09098 Dehyd-heme_bind: Quin 36.2 28 0.0006 24.2 1.8 14 72-85 55-68 (167)
198 PRK09381 trxA thioredoxin; Pro 35.9 1.1E+02 0.0023 18.8 6.2 51 19-70 32-88 (109)
199 cd02999 PDI_a_ERp44_like PDIa 35.6 1.1E+02 0.0023 18.8 4.6 45 18-64 28-77 (100)
200 cd02948 TRX_NDPK TRX domain, T 35.6 1.1E+02 0.0023 18.8 6.1 51 18-70 27-84 (102)
201 PF09314 DUF1972: Domain of un 35.4 40 0.00087 23.8 2.5 20 66-85 154-173 (185)
202 cd02956 ybbN ybbN protein fami 35.3 99 0.0021 18.3 4.2 51 18-69 22-78 (96)
203 KOG3029 Glutathione S-transfer 34.8 2.1E+02 0.0046 22.0 6.3 76 69-145 236-314 (370)
204 PF14595 Thioredoxin_9: Thiore 34.5 17 0.00038 23.9 0.6 46 18-64 51-102 (129)
205 PTZ00051 thioredoxin; Provisio 34.2 1E+02 0.0023 18.3 5.3 51 18-69 28-83 (98)
206 PF11711 Tim54: Inner membrane 33.8 35 0.00076 27.1 2.2 42 2-43 69-110 (382)
207 PRK11657 dsbG disulfide isomer 33.5 78 0.0017 23.4 3.9 13 19-31 128-140 (251)
208 PF09868 DUF2095: Uncharacteri 32.9 31 0.00067 22.6 1.5 61 24-84 26-91 (128)
209 cd04911 ACT_AKiii-YclM-BS_1 AC 32.7 59 0.0013 19.5 2.6 23 20-42 15-37 (76)
210 TIGR01162 purE phosphoribosyla 32.6 93 0.002 21.4 3.9 30 20-49 11-40 (156)
211 cd00449 PLPDE_IV PyridoxaL 5'- 30.6 52 0.0011 23.9 2.6 55 29-83 196-255 (256)
212 PF13344 Hydrolase_6: Haloacid 30.1 75 0.0016 19.8 3.0 65 21-88 17-82 (101)
213 cd02987 Phd_like_Phd Phosducin 30.1 1.9E+02 0.0041 20.0 6.4 52 19-72 94-150 (175)
214 cd03021 DsbA_GSTK DsbA family, 30.1 89 0.0019 22.1 3.7 25 20-44 11-39 (209)
215 COG3809 Uncharacterized protei 29.4 14 0.0003 22.4 -0.5 15 14-28 18-32 (88)
216 cd01557 BCAT_beta_family BCAT_ 27.9 38 0.00082 25.3 1.5 56 29-84 211-273 (279)
217 cd05295 MDH_like Malate dehydr 27.8 2.1E+02 0.0044 23.4 5.7 73 18-90 2-91 (452)
218 TIGR01764 excise DNA binding d 27.7 92 0.002 15.7 3.5 26 56-81 23-48 (49)
219 cd03017 PRX_BCP Peroxiredoxin 27.2 47 0.001 21.4 1.7 48 19-67 35-89 (140)
220 cd02965 HyaE HyaE family; HyaE 26.7 1.2E+02 0.0026 19.5 3.5 53 19-72 40-98 (111)
221 PF14834 GST_C_4: Glutathione 26.5 1.2E+02 0.0026 19.8 3.4 31 116-147 41-71 (117)
222 cd03003 PDI_a_ERdj5_N PDIa fam 26.4 1.5E+02 0.0033 17.8 5.5 44 19-64 29-77 (101)
223 PRK06092 4-amino-4-deoxychoris 26.1 90 0.002 23.0 3.2 55 29-84 208-265 (268)
224 cd02950 TxlA TRX-like protein 25.9 2E+02 0.0044 19.0 6.2 67 19-85 31-111 (142)
225 PRK10877 protein disulfide iso 25.7 1.6E+02 0.0034 21.5 4.4 15 18-32 117-131 (232)
226 PF14026 DUF4242: Protein of u 25.3 1E+02 0.0022 18.3 2.8 36 5-40 39-74 (77)
227 cd02971 PRX_family Peroxiredox 25.1 62 0.0013 20.7 2.0 49 19-67 34-89 (140)
228 PF08534 Redoxin: Redoxin; In 24.9 96 0.0021 20.1 2.9 48 19-67 40-94 (146)
229 KOG4023 Uncharacterized conser 24.3 1.3E+02 0.0028 19.2 3.1 43 1-46 2-44 (108)
230 cd02962 TMX2 TMX2 family; comp 24.0 2.4E+02 0.0052 19.1 6.2 53 18-71 57-122 (152)
231 PF08159 NUC153: NUC153 domain 23.4 55 0.0012 15.9 1.1 17 42-58 13-29 (30)
232 PF13728 TraF: F plasmid trans 22.7 3E+02 0.0065 19.8 6.4 45 20-64 132-188 (215)
233 KOG0912 Thiol-disulfide isomer 22.5 76 0.0016 24.6 2.2 66 18-83 23-105 (375)
234 cd03006 PDI_a_EFP1_N PDIa fami 22.5 1.3E+02 0.0028 19.2 3.1 46 18-64 39-89 (113)
235 KOG0907 Thioredoxin [Posttrans 22.5 1.9E+02 0.004 18.3 3.8 53 18-71 31-88 (106)
236 cd02996 PDI_a_ERp44 PDIa famil 22.4 2E+02 0.0043 17.6 4.3 46 18-64 28-83 (108)
237 PF12728 HTH_17: Helix-turn-he 21.6 1.4E+02 0.003 15.6 3.6 28 56-83 23-50 (51)
238 PF13098 Thioredoxin_2: Thiore 21.5 71 0.0015 19.6 1.7 27 19-45 16-49 (112)
239 cd02998 PDI_a_ERp38 PDIa famil 21.5 1.9E+02 0.0041 17.1 4.2 46 19-64 29-80 (105)
240 cd03004 PDI_a_ERdj5_C PDIa fam 21.3 1.7E+02 0.0037 17.6 3.4 45 19-64 30-78 (104)
241 PRK06606 branched-chain amino 21.2 84 0.0018 23.8 2.3 54 29-82 228-286 (306)
242 PRK13356 aminotransferase; Pro 21.2 86 0.0019 23.4 2.3 54 29-83 221-277 (286)
243 cd03024 DsbA_FrnE DsbA family, 21.0 1.3E+02 0.0027 20.8 3.1 26 19-44 8-41 (201)
244 cd02997 PDI_a_PDIR PDIa family 21.0 2E+02 0.0043 17.1 5.4 47 18-64 27-80 (104)
245 cd02994 PDI_a_TMX PDIa family, 20.6 2.1E+02 0.0044 17.1 5.1 45 19-64 27-76 (101)
246 PRK10996 thioredoxin 2; Provis 20.4 2.6E+02 0.0057 18.3 6.4 52 18-70 62-119 (139)
247 KOG4235 Mitochondrial thymidin 20.2 43 0.00092 24.4 0.5 56 19-74 162-224 (244)
248 cd03000 PDI_a_TMX3 PDIa family 20.1 2.2E+02 0.0047 17.2 4.5 46 18-64 25-77 (104)
249 cd02972 DsbA_family DsbA famil 20.1 1E+02 0.0022 17.8 2.2 14 19-32 8-21 (98)
250 TIGR03412 iscX_yfhJ FeS assemb 20.0 1.1E+02 0.0024 17.6 2.1 17 70-86 2-18 (63)
No 1
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=1.8e-32 Score=197.19 Aligned_cols=148 Identities=70% Similarity=1.122 Sum_probs=124.9
Q ss_pred CceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHH
Q 032062 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL 80 (148)
|++|||||++-+....++.||||+||+++|+++|++|+.+.+++..++++|++.||.|+||+|++||.+|+||.||++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL 80 (213)
T PLN02378 1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGIL 80 (213)
T ss_pred CceehhhhccCCCCCCCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 89999999998888889999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HhhCCCCCCCCChHHhhhhccchHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhC-CCCccCCCCCC
Q 032062 81 EEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTH-VQTNLKHRYPF 148 (148)
Q Consensus 81 ~~~~~~~~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~-~~~fl~~~~s~ 148 (148)
+++|+++.+.+..+++.+.+.++..+..+.......+...+.+.+.|+.+|++|+++ +.+++|+++|.
T Consensus 81 ~~~~~~~~l~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ 149 (213)
T PLN02378 81 EEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSA 149 (213)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCch
Confidence 999987666555677777777776655554443323445567888999999999854 34566778884
No 2
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=1.4e-30 Score=192.53 Aligned_cols=147 Identities=59% Similarity=1.047 Sum_probs=126.7
Q ss_pred ceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
++|+++|++.....+++.||||+|++++|+++|++|+.+.+++.+++++|++.||.|+||+|+++|..|+||.+|++||+
T Consensus 55 ~~~~~~~~~~~~~~~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 55 PLEVCVKASLTVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred cHHHHHhcccCCCCcCCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 37899999887788899999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hhCCCCCCCCChHHhhhhccchHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 82 EKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 82 ~~~~~~~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
++||++.|.+..+++.+.++++..+..++......+...+.+.+.|+.+|++|++++.+++|+++|+
T Consensus 135 e~~p~~~L~~~~era~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~Sl 201 (265)
T PLN02817 135 EKYPDPPLATPPEKASVGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIKENGPFINGEKISA 201 (265)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCH
Confidence 9999877777678888888888877666554433344456788899999999987556667888984
No 3
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.96 E-value=8e-29 Score=180.05 Aligned_cols=146 Identities=28% Similarity=0.495 Sum_probs=114.5
Q ss_pred ceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
.||||||+++ .+..++.||+|+||+++|.++|++|+.+.+++..++++|++.||.|+||+|+++|.+|+||.||++||+
T Consensus 2 ~~el~~ka~~-~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 2 EIELFVKAGS-DGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred ceEEEEecCC-CCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 4899999986 478899999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hhCCC---CCCCCCh-HHhhhhccchHHHHHhhccCCC--ChhHHHHHHHHHHHHHHHHhh-----------------CC
Q 032062 82 EKYPE---PSLTNPP-EFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT-----------------HV 138 (148)
Q Consensus 82 ~~~~~---~~L~p~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~le~~L~~-----------------~~ 138 (148)
++|+. +.+.|.+ ........++..+..++..... .+...+.+.+.|+.||++|.+ ++
T Consensus 81 e~~~~~~~p~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~ 160 (236)
T TIGR00862 81 ETLCPPRYPKLSPKHPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRR 160 (236)
T ss_pred HHcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCC
Confidence 99974 3345532 2222223355655555433321 133455689999999999974 33
Q ss_pred CCccCCCCCC
Q 032062 139 QTNLKHRYPF 148 (148)
Q Consensus 139 ~~fl~~~~s~ 148 (148)
.+|.|+++|+
T Consensus 161 ~f~~Gd~~tl 170 (236)
T TIGR00862 161 KFLDGDELTL 170 (236)
T ss_pred CcccCCccch
Confidence 4555778885
No 4
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.96 E-value=4.7e-28 Score=151.29 Aligned_cols=85 Identities=26% Similarity=0.525 Sum_probs=80.6
Q ss_pred ceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
.+|+|+|+|++.+. ++.||||+|+|++|+++||+|+.+.+++.++++||++.||.|+||+|+++|.+++||.+|++||+
T Consensus 5 ~~el~vka~~~~~~-~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 5 EIELFVKASSDGES-IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred cEEEEEEeccCCCC-CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 58999999988677 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCC
Q 032062 82 EKYPEP 87 (148)
Q Consensus 82 ~~~~~~ 87 (148)
++++.+
T Consensus 84 e~~~~~ 89 (91)
T cd03061 84 ETLCPP 89 (91)
T ss_pred HHccCC
Confidence 998743
No 5
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-27 Score=169.90 Aligned_cols=135 Identities=26% Similarity=0.342 Sum_probs=108.7
Q ss_pred CCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhC-CCCCCcEEEeCCeeeechHHHHHHHHhhCC-CCCCCC
Q 032062 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEIS-PEGKVPVVKFDDKWVADSDVIVRIIEEKYP-EPSLTN 91 (148)
Q Consensus 14 ~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~-p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~-~~~L~p 91 (148)
..+..+|||++|++++|+++||+|+.+.+|+.++++||++.| +.++||+|+++|..++||..|++||++.+| +++++|
T Consensus 12 L~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~iLP 91 (231)
T KOG0406|consen 12 LLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPILP 91 (231)
T ss_pred EEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCCCC
Confidence 345579999999999999999999999999999999999999 579999999999999999999999999999 589999
Q ss_pred Ch--HHhhhhccc-------hHHHHHhhccCC--CChhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 92 PP--EFASLGSKI-------FPSFVNFLKSKD--PNDGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 92 ~~--~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
.+ +|+...-|+ +......+..+. ..+...+++.+.|..+|+.|.+.+++|.|++++|
T Consensus 92 ~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~ 159 (231)
T KOG0406|consen 92 SDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGF 159 (231)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCH
Confidence 65 565544332 222223333222 2355677899999999999996566777888875
No 6
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.1e-26 Score=159.65 Aligned_cols=147 Identities=52% Similarity=0.922 Sum_probs=131.6
Q ss_pred CceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHH
Q 032062 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL 80 (148)
|.+|||+|++++.+..++.||||+|+.|.|.++|++|.++.||+..+++||++..|.|++|+|..++...+||..|.++|
T Consensus 2 p~iel~vkA~s~~~~~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~L 81 (221)
T KOG1422|consen 2 PEIELCVKAGSDGPDSLGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFL 81 (221)
T ss_pred CceEEEEEeccCCcccCCCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHH
Confidence 68999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCCC--ChHHhhhhccchHHHHHhhccC-CC-ChhHHHHHHHHHHHHHHHHhh-CCCCcc-CCCCC
Q 032062 81 EEKYPEPSLTN--PPEFASLGSKIFPSFVNFLKSK-DP-NDGTEQALLEELKALDEHLKT-HVQTNL-KHRYP 147 (148)
Q Consensus 81 ~~~~~~~~L~p--~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~l~~le~~L~~-~~~~fl-~~~~s 147 (148)
++++|.+.+.. .+|.+.+.+.+|..|..++... +. ++..++.+.+.|..||++|+. +.+.|+ |+++|
T Consensus 82 ee~l~~p~~~~~~~~E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt 154 (221)
T KOG1422|consen 82 EEKLPPPKLPTLAPPESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLT 154 (221)
T ss_pred HHhcCCCCCcccCCHHHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeee
Confidence 99999876533 6788899999999999997543 32 356778899999999999997 667777 55676
No 7
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.94 E-value=2.7e-26 Score=164.83 Aligned_cols=130 Identities=17% Similarity=0.259 Sum_probs=102.6
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCCCCCCCCh--HH
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPP--EF 95 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~--~~ 95 (148)
..||+|++|+++|+++|++|+.+.+++.+++++|++.||.|+||+|+++|.+|+||.||++||+++||+..|+|.+ ++
T Consensus 17 ~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~p~~~~~r 96 (211)
T PRK09481 17 PTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVAR 96 (211)
T ss_pred CCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 3589999999999999999999999988888999999999999999999999999999999999999987888853 56
Q ss_pred hhhhccchHH---HHH---hhccCCC--ChhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 96 ASLGSKIFPS---FVN---FLKSKDP--NDGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 96 ~~~~~~~~~~---~~~---~~~~~~~--~~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+.+..|+... +.. .+....+ .+...+.+.+.++.+|++|++ +.+++|+++|+
T Consensus 97 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~-~~~l~G~~~t~ 156 (211)
T PRK09481 97 GESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGE-KPYFMSEEFSL 156 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcc-CCcccCCCccH
Confidence 6666554321 111 1111111 134556788899999999975 45667888984
No 8
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-24 Score=148.61 Aligned_cols=131 Identities=27% Similarity=0.406 Sum_probs=101.8
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCC----CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCCCCCCCC
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD----KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNP 92 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~----~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~ 92 (148)
+.-|..++|||++|+++||+|+.+.|++.. ...+|++.||+++||+|++||.+|+||.||++||++++|+++|+|.
T Consensus 11 YWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ppLLP~ 90 (217)
T KOG0868|consen 11 YWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDPPLLPK 90 (217)
T ss_pred hhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCCCCCCc
Confidence 345777899999999999999999999864 2458999999999999999999999999999999999999999996
Q ss_pred h--HHhh-------hhccchH----HHHHhhccCCCC--h-hHHHHHHHHHHHHHHHHhhCCCCcc-CCCCC
Q 032062 93 P--EFAS-------LGSKIFP----SFVNFLKSKDPN--D-GTEQALLEELKALDEHLKTHVQTNL-KHRYP 147 (148)
Q Consensus 93 ~--~~~~-------~~~~~~~----~~~~~~~~~~~~--~-~~~~~l~~~l~~le~~L~~~~~~fl-~~~~s 147 (148)
+ .|+. +++.+.+ .+..++..+... . =....+.+.|..||+.|+.+.|.|. |+++|
T Consensus 91 d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevt 162 (217)
T KOG0868|consen 91 DPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVT 162 (217)
T ss_pred CHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceee
Confidence 4 4443 2333433 233445544332 1 1344688999999999999877666 55665
No 9
>PRK15113 glutathione S-transferase; Provisional
Probab=99.92 E-value=4.9e-24 Score=153.36 Aligned_cols=129 Identities=17% Similarity=0.259 Sum_probs=99.6
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCCCC---CCCC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS---LTNP 92 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~---L~p~ 92 (148)
.||+|+||+++|+++||+|+.+.+++.. +.++|++.||.|+||+|++||.+|+||.||++||+++|+++. |+|.
T Consensus 15 ~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~~l~p~ 94 (214)
T PRK15113 15 FSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPA 94 (214)
T ss_pred CCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcCCCCccccCCC
Confidence 3899999999999999999999999864 568999999999999999999999999999999999998765 8885
Q ss_pred h--HHhhhhccchHH---HHH---------hhccC-CC--ChhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 93 P--EFASLGSKIFPS---FVN---------FLKSK-DP--NDGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 93 ~--~~~~~~~~~~~~---~~~---------~~~~~-~~--~~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+ +++.+.+|+... +.. .+... .. .+...+.+.+.++.+|++|+++ +.|++|+||+
T Consensus 95 ~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~l~G~~Tl 166 (214)
T PRK15113 95 DLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG-QPNLFGEWCI 166 (214)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC-CCEeeCCccH
Confidence 3 666666554221 111 01111 11 2446667889999999999754 3577667884
No 10
>PLN02473 glutathione S-transferase
Probab=99.90 E-value=5.9e-23 Score=147.51 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=96.9
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCCC--CCCCCh
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEP--SLTNPP 93 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~--~L~p~~ 93 (148)
.||+++||+++|+++|++|+.+.++..+ ++++|++.||.|+||+|++||.+|+||.||++||++++++. +|+|.+
T Consensus 10 ~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~~~l~p~~ 89 (214)
T PLN02473 10 KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQGTDLLGKT 89 (214)
T ss_pred CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcCCCCCCCC
Confidence 3889999999999999999999988763 67889999999999999999999999999999999999753 588853
Q ss_pred --HHhhhhccch-------HH----HH-Hhhcc--CCC-C----hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 94 --EFASLGSKIF-------PS----FV-NFLKS--KDP-N----DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 94 --~~~~~~~~~~-------~~----~~-~~~~~--~~~-~----~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+++.+.+|+. .. +. ..+.. ... . +...+++.+.|+.+|++|+++ .+++|+++|+
T Consensus 90 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l~Gd~~t~ 164 (214)
T PLN02473 90 LEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATN-RYLGGDEFTL 164 (214)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccC-CcccCCCCCH
Confidence 5665555531 11 10 11211 111 1 223456888999999999764 4666778985
No 11
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.90 E-value=5.8e-23 Score=147.00 Aligned_cols=133 Identities=20% Similarity=0.324 Sum_probs=99.9
Q ss_pred CcCcCchHHHHHHHHHhcCCCceEEEecCC----CCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCCCCCCC
Q 032062 16 ILGDCPFSQRALLTLEEKKVPYKRHLINIS----DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTN 91 (148)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~----~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p 91 (148)
+...||+|+|+|++|+++||+|+.+.++.. .++++|++.||.|+||+|+++|.+|+||.||++||++++++..|+|
T Consensus 4 ~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~l~p 83 (210)
T TIGR01262 4 SYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLP 83 (210)
T ss_pred cCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCCCCC
Confidence 345799999999999999999999998862 2467899999999999999999999999999999999998777888
Q ss_pred C--hHHhhhhccchHH-----------HHHhhccC-CCC-----hhHHHHHHHHHHHHHHHHhhCCC-CccCCCCCC
Q 032062 92 P--PEFASLGSKIFPS-----------FVNFLKSK-DPN-----DGTEQALLEELKALDEHLKTHVQ-TNLKHRYPF 148 (148)
Q Consensus 92 ~--~~~~~~~~~~~~~-----------~~~~~~~~-~~~-----~~~~~~l~~~l~~le~~L~~~~~-~fl~~~~s~ 148 (148)
. .+++.+.+|+... +..++... ... +...+.+.+.|+.||++|+++++ +++|+++|+
T Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 160 (210)
T TIGR01262 84 ADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTL 160 (210)
T ss_pred CCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCH
Confidence 4 3566555543211 11122111 111 11334588899999999987644 567888984
No 12
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.1e-22 Score=144.47 Aligned_cols=129 Identities=27% Similarity=0.438 Sum_probs=98.0
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCC--CCchhhhhhCCCCCCcEEEeCCe-eeechHHHHHHHHhhCCCCCCCCCh-
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINIS--DKPQWFMEISPEGKVPVVKFDDK-WVADSDVIVRIIEEKYPEPSLTNPP- 93 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~--~~~~~~~~~~p~g~vP~L~~~g~-~l~eS~aI~~yL~~~~~~~~L~p~~- 93 (148)
..||||+||++++.++|++|+.+.++.. .++++|++.||.|+||+|+++|. +|+||.||++||+++||++.|+|.+
T Consensus 7 ~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~l~p~~~ 86 (211)
T COG0625 7 PTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPADP 86 (211)
T ss_pred CCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCCcCCCCc
Confidence 4579999999999999999999999987 47899999999999999998775 8999999999999999976688843
Q ss_pred ----HHhhhhccch-------HHHHHhhccC---C-C--C---hhHHHHHHHHHHHHHHHHhhCCCCccCCCCC
Q 032062 94 ----EFASLGSKIF-------PSFVNFLKSK---D-P--N---DGTEQALLEELKALDEHLKTHVQTNLKHRYP 147 (148)
Q Consensus 94 ----~~~~~~~~~~-------~~~~~~~~~~---~-~--~---~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s 147 (148)
+++.+..|+. +.+....... . . . +.....+.+.+..+|+.|++ +.+++|++||
T Consensus 87 ~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t 159 (211)
T COG0625 87 LARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLAD-GPYLAGDRFT 159 (211)
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhcc-CCcccCCCCC
Confidence 4444444432 2222221111 0 0 1 23455688899999999987 3455577898
No 13
>PLN02395 glutathione S-transferase
Probab=99.89 E-value=4.5e-22 Score=142.93 Aligned_cols=126 Identities=25% Similarity=0.337 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhcCCCceEEEecCC---CCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCC--CCCCCCh--H
Q 032062 22 FSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPE--PSLTNPP--E 94 (148)
Q Consensus 22 ~~~~v~~~l~~~gi~~~~~~i~~~---~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~--~~L~p~~--~ 94 (148)
+++|++++|+++|++|+.+.++.. .++++|++.||.|+||+|+++|.+|+||.||++||+++|+. ++|+|.+ +
T Consensus 12 ~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~ 91 (215)
T PLN02395 12 SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQGPDLLGKTIEE 91 (215)
T ss_pred cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCCcCcCCCChhH
Confidence 589999999999999999999875 35789999999999999999999999999999999999975 3588853 5
Q ss_pred Hhhhhccch-------HHHHH----hhc----cCCCC----hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 95 FASLGSKIF-------PSFVN----FLK----SKDPN----DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 95 ~~~~~~~~~-------~~~~~----~~~----~~~~~----~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
++.+.+|+. +.+.. ... ..... +...+.+.+.++.+|++|+++ ++++|+++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l~G~~~s~ 163 (215)
T PLN02395 92 RGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKS-KYLAGDFVSL 163 (215)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCC-ccccCCCcCH
Confidence 565555532 11111 111 11111 234566888999999999754 5667888984
No 14
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.88 E-value=8.4e-22 Score=140.35 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=98.0
Q ss_pred CcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEE-eCCeeeechHHHHHHHHhhCCCCCCCCCh-
Q 032062 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPP- 93 (148)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~L~p~~- 93 (148)
+...||++++||++|+++|++|+.+.++...+++++.+.||.|+||+|+ ++|.+|+||.||++||+++++++.|+|.+
T Consensus 5 ~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~ 84 (202)
T PRK10357 5 GSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPRDP 84 (202)
T ss_pred cCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCCCCCH
Confidence 3456999999999999999999999988776777888999999999998 67899999999999999999877788853
Q ss_pred -HHhhhhccch------HHHHHhhc----cC-CCC----hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 94 -EFASLGSKIF------PSFVNFLK----SK-DPN----DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 94 -~~~~~~~~~~------~~~~~~~~----~~-~~~----~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+++.+.+++. ......+. .. ... +...+.+.+.|+.+|++|.++ . ++|+++|+
T Consensus 85 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~-~-l~Gd~~t~ 153 (202)
T PRK10357 85 LAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDG-T-LKTDTVNL 153 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccC-c-ccCCCcCH
Confidence 4444443321 11111111 11 111 234457888999999999753 4 88999985
No 15
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.88 E-value=5.1e-22 Score=141.23 Aligned_cols=127 Identities=17% Similarity=0.280 Sum_probs=95.3
Q ss_pred chHHHHHHHHHhcCCCceEEEecCCC----CchhhhhhCCCCCCcEEE-eCCeeeechHHHHHHHHhhCCCCCCC-CC--
Q 032062 21 PFSQRALLTLEEKKVPYKRHLINISD----KPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLT-NP-- 92 (148)
Q Consensus 21 p~~~~v~~~l~~~gi~~~~~~i~~~~----~~~~~~~~~p~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~L~-p~-- 92 (148)
+++++++++|+++||+|+.+.+++.. .+++|++.||.|+||+|+ +||.+|+||.||++||+++++++.++ |.
T Consensus 9 s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~~~l~~p~~~ 88 (201)
T PRK10542 9 ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVGS 88 (201)
T ss_pred HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcccccCCCCCc
Confidence 46899999999999999999998853 457899999999999998 58899999999999999999877765 43
Q ss_pred hHHhhhhccch-------HHHHHhhccCCCC---hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 93 PEFASLGSKIF-------PSFVNFLKSKDPN---DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 93 ~~~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
.+++.+.+|+. +.+...+...... +...+.+.+.|+.+|+.|+++ ++++|+++|+
T Consensus 89 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l~G~~~s~ 153 (201)
T PRK10542 89 LSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADE-QWICGQRFTI 153 (201)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC-CeeeCCCCcH
Confidence 36665555543 2222222222111 223557888999999999754 5667788985
No 16
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.87 E-value=3.9e-22 Score=121.13 Aligned_cols=71 Identities=38% Similarity=0.708 Sum_probs=67.5
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCCC
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEP 87 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 87 (148)
..+||||+|+|++|+++||+|+.+.++..++.+++.+.||.|+||+|++||..++||.+|++||+++|+++
T Consensus 4 ~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 4 FPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp ETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 46799999999999999999999999988888999999999999999999999999999999999999864
No 17
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.87 E-value=1.1e-21 Score=141.07 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=92.9
Q ss_pred CchHHHHHHHHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEe-----CC--eeeechHHHHHHHHhhCCCCCC
Q 032062 20 CPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKF-----DD--KWVADSDVIVRIIEEKYPEPSL 89 (148)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~-----~g--~~l~eS~aI~~yL~~~~~~~~L 89 (148)
+|+|+||+++|+++||+|+.+.+++.. ++++|++.||.|+||+|++ || .+|+||.||++||+++++ .+
T Consensus 9 ~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~~~~~--~l 86 (215)
T PRK13972 9 TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTG--LF 86 (215)
T ss_pred CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHHHhcC--CC
Confidence 578999999999999999999998754 3688999999999999987 45 479999999999999986 35
Q ss_pred CCC--hHHhhhhccchHHH---HHh------hccC-CC--C---hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 90 TNP--PEFASLGSKIFPSF---VNF------LKSK-DP--N---DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 90 ~p~--~~~~~~~~~~~~~~---~~~------~~~~-~~--~---~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
.|. .+++.+.+|+.-.. ... +... .. . +...+.+.+.|..+|++|.++ .+++|++||+
T Consensus 87 ~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l~Gd~~t~ 161 (215)
T PRK13972 87 LSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENS-PWLGGENYSI 161 (215)
T ss_pred CCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccC-ccccCCCCCH
Confidence 563 46777777653211 110 1110 10 1 223456788899999999764 4566778984
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.85 E-value=1.1e-20 Score=135.16 Aligned_cols=128 Identities=19% Similarity=0.283 Sum_probs=89.8
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEE-EeCCeeeechHHHHHHHHhhCCCCCCCCChHH
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVV-KFDDKWVADSDVIVRIIEEKYPEPSLTNPPEF 95 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L-~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~~~ 95 (148)
...||+|+|||++|+++||+|+.+.++..... .-.+.||.|+||+| ++||..++||.||++||+++||++.+. .+++
T Consensus 6 ~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~-~~~~ 83 (210)
T PRK10387 6 YDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT-GKRS 83 (210)
T ss_pred CCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC-Cccc
Confidence 44699999999999999999999988654322 22678999999999 578999999999999999999865443 2344
Q ss_pred hhhhccchHH-------HHHhhccC---C--------------------------CChhHHHHHHHHHHHHHHHHhhCCC
Q 032062 96 ASLGSKIFPS-------FVNFLKSK---D--------------------------PNDGTEQALLEELKALDEHLKTHVQ 139 (148)
Q Consensus 96 ~~~~~~~~~~-------~~~~~~~~---~--------------------------~~~~~~~~l~~~l~~le~~L~~~~~ 139 (148)
+.+.+|+... +...+... . ..++..+.+.+.|+.+|++|++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~ 161 (210)
T PRK10387 84 PAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDPLIVK--P 161 (210)
T ss_pred HHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHHHhcC--c
Confidence 4444443211 11111000 0 0023355788899999999963 5
Q ss_pred CccCCCCCC
Q 032062 140 TNLKHRYPF 148 (148)
Q Consensus 140 ~fl~~~~s~ 148 (148)
+++|+++|+
T Consensus 162 ~l~G~~~s~ 170 (210)
T PRK10387 162 NAVNGELST 170 (210)
T ss_pred cccCCCCCH
Confidence 677888984
No 19
>PRK11752 putative S-transferase; Provisional
Probab=99.85 E-value=1.7e-20 Score=139.00 Aligned_cols=127 Identities=23% Similarity=0.315 Sum_probs=94.8
Q ss_pred cCchHHHHHHHHHhc------CCCceEEEecCCC---CchhhhhhCCCCCCcEEEeC----CeeeechHHHHHHHHhhCC
Q 032062 19 DCPFSQRALLTLEEK------KVPYKRHLINISD---KPQWFMEISPEGKVPVVKFD----DKWVADSDVIVRIIEEKYP 85 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~------gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~----g~~l~eS~aI~~yL~~~~~ 85 (148)
.||+|+||+++|+++ |++|+.+.+++.. .+++|++.||.|+||+|+++ |.+|+||.||++||+++|+
T Consensus 51 ~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~ 130 (264)
T PRK11752 51 GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFG 130 (264)
T ss_pred CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcC
Confidence 489999999999997 8999999988753 47899999999999999985 3689999999999999997
Q ss_pred CCCCCCC--hHHhhhhccchHH----------HHHhhc-cCCCC----hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 86 EPSLTNP--PEFASLGSKIFPS----------FVNFLK-SKDPN----DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 86 ~~~L~p~--~~~~~~~~~~~~~----------~~~~~~-~~~~~----~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+|+|. .+++.+.+|+.-. +..++. ..... +...+++.+.|+.+|++|+++ .+++|++||+
T Consensus 131 --~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~-~fl~Gd~~Tl 207 (264)
T PRK11752 131 --AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH-EYIAGDEYTI 207 (264)
T ss_pred --CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCccCH
Confidence 38874 3677777664321 111111 11111 223446788999999999764 4667888984
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.85 E-value=2.6e-20 Score=133.69 Aligned_cols=129 Identities=19% Similarity=0.293 Sum_probs=89.6
Q ss_pred CcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEE-eCCeeeechHHHHHHHHhhCCCCCCCCChH
Q 032062 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPPE 94 (148)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~L~p~~~ 94 (148)
....||||+|||++|+++|++|+.+.+.... .....+.||.|+||+|+ +||..++||.+|++||+++||.+.+.+. .
T Consensus 4 ~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~-~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~~~-~ 81 (209)
T TIGR02182 4 IYDHCPFCVRARMIFGLKNIPVEKHVLLNDD-EETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLTGK-V 81 (209)
T ss_pred cCCCCChHHHHHHHHHHcCCCeEEEECCCCc-chhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCCCC-C
Confidence 4557999999999999999999998775433 22347899999999998 8899999999999999999986434332 2
Q ss_pred Hhhhhccch-------HHHHHhhcc------------------CC-----------CChhHHHHHHHHHHHHHHHHhhCC
Q 032062 95 FASLGSKIF-------PSFVNFLKS------------------KD-----------PNDGTEQALLEELKALDEHLKTHV 138 (148)
Q Consensus 95 ~~~~~~~~~-------~~~~~~~~~------------------~~-----------~~~~~~~~l~~~l~~le~~L~~~~ 138 (148)
+..+.+|+. ..+...+.. +. ..++..+.+.+.|+.+|++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~L~~~- 160 (209)
T TIGR02182 82 SPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKLIDGP- 160 (209)
T ss_pred hHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHHHhCc-
Confidence 333333321 111111110 00 00234566888999999999754
Q ss_pred CCccCCCCCC
Q 032062 139 QTNLKHRYPF 148 (148)
Q Consensus 139 ~~fl~~~~s~ 148 (148)
.|++|++|+
T Consensus 161 -~~l~g~~Ti 169 (209)
T TIGR02182 161 -NAVNGELSE 169 (209)
T ss_pred -cccCCCCCH
Confidence 567888884
No 21
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.84 E-value=1.9e-20 Score=112.81 Aligned_cols=68 Identities=25% Similarity=0.381 Sum_probs=63.7
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhC
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 84 (148)
...||+|++++++|+++|++|+.+.++..+++++|++.||.|+||+|+++|..++||.||++||+++|
T Consensus 6 ~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 6 GPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 34699999999999999999999999988888999999999999999999999999999999999875
No 22
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.84 E-value=2.8e-20 Score=133.09 Aligned_cols=125 Identities=15% Similarity=0.208 Sum_probs=87.5
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCCCchhhh--------hhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCCCCCC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQWFM--------EISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLT 90 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~--------~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~ 90 (148)
.++++++||++|+++|++|+.+.++.. ++ .+. +.||+|+||+|++||.+|+||.||++||+++++ +.
T Consensus 12 ~~~~~~~vrl~L~~~gi~ye~~~~~~~-~~-~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~~---~~ 86 (205)
T PTZ00057 12 ARGKAELIRLIFAYLGIEYTDKRFGEN-GD-AFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKYK---IC 86 (205)
T ss_pred CCcchHHHHHHHHHcCCCeEEEecccc-ch-HHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHcC---CC
Confidence 478899999999999999999977532 22 332 479999999999999999999999999999997 33
Q ss_pred CChHHhhhhccchH-HH----HHhhc----cCCCChhHHHHHHHHHHHHHHHHhhCC-CCccCCCCCC
Q 032062 91 NPPEFASLGSKIFP-SF----VNFLK----SKDPNDGTEQALLEELKALDEHLKTHV-QTNLKHRYPF 148 (148)
Q Consensus 91 p~~~~~~~~~~~~~-~~----~~~~~----~~~~~~~~~~~l~~~l~~le~~L~~~~-~~fl~~~~s~ 148 (148)
+..+++.+..|+.. .. ..+.. .....+...+.+.+.|..+|+.|++++ ++++|+++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~ 154 (205)
T PTZ00057 87 GESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTY 154 (205)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccH
Confidence 44444433333211 11 11111 001112344578889999999998764 4566889985
No 23
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.83 E-value=2.2e-20 Score=111.99 Aligned_cols=65 Identities=35% Similarity=0.652 Sum_probs=56.6
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecC----CCCchhhhhhCCCCCCcEEEe-CCeeeechHHHHHHHHhh
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINI----SDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIEEK 83 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~----~~~~~~~~~~~p~g~vP~L~~-~g~~l~eS~aI~~yL~~~ 83 (148)
+||||+|++++|+++|++|+...+.. ..++++|.+.||.|+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 69999999999999999999988844 235689999999999999997 789999999999999974
No 24
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.83 E-value=4.7e-20 Score=111.56 Aligned_cols=68 Identities=28% Similarity=0.459 Sum_probs=62.9
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCC-CCCcEEEeCCeeeechHHHHHHHHhhC
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPE-GKVPVVKFDDKWVADSDVIVRIIEEKY 84 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~-g~vP~L~~~g~~l~eS~aI~~yL~~~~ 84 (148)
...||+|+|+|++|+++|++|+.+.++...++++|++.||. |+||+|+++|.+++||.||++||++++
T Consensus 6 ~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 6 AWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 45699999999999999999999998887778899999996 999999999999999999999999875
No 25
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.6e-19 Score=131.01 Aligned_cols=129 Identities=20% Similarity=0.211 Sum_probs=99.6
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCC---CCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCC-CCC-CCCC
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYP-EPS-LTNP 92 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~---~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~-~~~-L~p~ 92 (148)
..||.|+++.+++.++|++|+.+.++.. +++++|+++||+|+||+|+|+|..++||.||+.||+++|. ..+ |+|.
T Consensus 9 ~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~~~l~p~ 88 (226)
T KOG0867|consen 9 LGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLGGILLPK 88 (226)
T ss_pred CCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCCcccCCc
Confidence 3488999999999999999999987765 4789999999999999999999999999999999999996 334 7775
Q ss_pred h--HHhhhhccchHHHH-------------H-hhccC-C--CChhHHHHHHHHHHHHHHHHhhCCCCccCCCCC
Q 032062 93 P--EFASLGSKIFPSFV-------------N-FLKSK-D--PNDGTEQALLEELKALDEHLKTHVQTNLKHRYP 147 (148)
Q Consensus 93 ~--~~~~~~~~~~~~~~-------------~-~~~~~-~--~~~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s 147 (148)
+ +++.+.+|+..... . .+... . ..+....++.+.++.+|.+|.++ .+..|+++|
T Consensus 89 ~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~-~yl~g~~~t 161 (226)
T KOG0867|consen 89 DLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQ-VYLAGDQLT 161 (226)
T ss_pred CHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccC-CcccCCccc
Confidence 3 67777776532111 1 01110 1 12456778999999999999874 455566776
No 26
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.82 E-value=4.8e-20 Score=111.37 Aligned_cols=64 Identities=27% Similarity=0.507 Sum_probs=58.7
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCC---CCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~---~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
..||+|+|+|++|+++|++|+.+.+++. .++++|.+.||.|+||+|++||.+++||.||++||+
T Consensus 7 ~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 7 TQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 3589999999999999999999998874 357889999999999999999999999999999985
No 27
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.82 E-value=5.7e-20 Score=110.39 Aligned_cols=65 Identities=25% Similarity=0.447 Sum_probs=60.3
Q ss_pred CcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeC-CeeeechHHHHHHH
Q 032062 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRII 80 (148)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~-g~~l~eS~aI~~yL 80 (148)
+..+||||+|++++|+++|++|+.+.++..+++++|++.||.|+||+|+++ |..++||.||++|+
T Consensus 5 ~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 5 SFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred ecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 345799999999999999999999999988788899999999999999985 89999999999996
No 28
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.81 E-value=1.2e-19 Score=112.42 Aligned_cols=80 Identities=25% Similarity=0.286 Sum_probs=67.9
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCc---hhhhhhCCCCCCcEEEeC-CeeeechHHHHH
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKP---QWFMEISPEGKVPVVKFD-DKWVADSDVIVR 78 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~---~~~~~~~p~g~vP~L~~~-g~~l~eS~aI~~ 78 (148)
+.+|..++.+ +. ..+||+|+|+|++|.++|++|+.+.++..++. +++ +.||.|+||+|+++ |..++||.+|++
T Consensus 1 ~~~~~~~~~~-~~-~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~ 77 (84)
T cd03038 1 ITLYDLAGKD-PV-RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAE 77 (84)
T ss_pred CeeEeccCCC-CC-CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHH
Confidence 3577777754 33 78899999999999999999999998876432 344 78999999999998 899999999999
Q ss_pred HHHhhCC
Q 032062 79 IIEEKYP 85 (148)
Q Consensus 79 yL~~~~~ 85 (148)
||+++||
T Consensus 78 yL~~~~p 84 (84)
T cd03038 78 YLEEAYP 84 (84)
T ss_pred HHHHhCc
Confidence 9999885
No 29
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=1.8e-19 Score=109.87 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=60.0
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEEe--CCeeeechHHHHHHHHhhC
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKF--DDKWVADSDVIVRIIEEKY 84 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~--~g~~l~eS~aI~~yL~~~~ 84 (148)
...||||+|++++|.++||+|+.+.++... ..+++++.||.|+||+|++ +|..++||.+|++||+++|
T Consensus 7 ~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 7 FEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 346999999999999999999999887543 4678999999999999987 4689999999999999875
No 30
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.80 E-value=2.8e-19 Score=107.96 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=60.1
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHh
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~ 82 (148)
...||+|++++++|+++|++|+.+.+++.. +.++|++.||.|+||+|+++|..++||.||++||++
T Consensus 6 ~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 6 LPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 345999999999999999999999998753 468999999999999999999999999999999975
No 31
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.80 E-value=6.2e-19 Score=107.04 Aligned_cols=66 Identities=29% Similarity=0.408 Sum_probs=60.2
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCC---CCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhh
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~---~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (148)
..||+|+++|++|+++|++|+.+.++.. .++++|.+.||.|+||+|+++|..++||.||++||+++
T Consensus 8 ~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 8 AMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 3599999999999999999999988875 35688999999999999999999999999999999874
No 32
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.79 E-value=8.5e-19 Score=106.55 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=61.0
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhC
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 84 (148)
..||+|++++++|+++|++|+.+.++..+ +.++|.+.||.|+||+|+++|..++||.||++||+++|
T Consensus 7 ~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 7 LMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 45899999999999999999999998754 45789999999999999999999999999999999875
No 33
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.79 E-value=5.7e-19 Score=106.64 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=59.4
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHh
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~ 82 (148)
.|++|+++|++|+++|++|+.+.++...+.+++++.||.|+||+|+++|..++||.||++||++
T Consensus 9 ~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 9 VRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 3889999999999999999999998765667899999999999999999999999999999986
No 34
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.78 E-value=1.1e-18 Score=105.39 Aligned_cols=65 Identities=28% Similarity=0.377 Sum_probs=59.7
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCC--CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~--~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
..+||+|+|++++|+++|++|+.+.++... +.++|++.||.|+||+|+++|..++||.||++||+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 457999999999999999999999998764 46889999999999999999999999999999984
No 35
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.78 E-value=1e-18 Score=106.00 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=60.8
Q ss_pred CcCcCchHHHHHHHHHhcCCCceEEEecCC--CCchhhhhhCCCCCCcEEEe-CCeeeechHHHHHHHHh
Q 032062 16 ILGDCPFSQRALLTLEEKKVPYKRHLINIS--DKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIEE 82 (148)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~--~~~~~~~~~~p~g~vP~L~~-~g~~l~eS~aI~~yL~~ 82 (148)
....||+|++++++|+++|++|+.+.++.. .++++|++.||.|+||+|++ +|..++||.||++||++
T Consensus 5 ~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 5 TYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred cCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 345689999999999999999999999886 46789999999999999997 58999999999999986
No 36
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.78 E-value=1.5e-18 Score=106.65 Aligned_cols=66 Identities=32% Similarity=0.527 Sum_probs=60.7
Q ss_pred CchHHHHHHHHHhcCCCceEEEecCC---CCchhhhhhCCCCCCcEEEeC---CeeeechHHHHHHHHhhCC
Q 032062 20 CPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFD---DKWVADSDVIVRIIEEKYP 85 (148)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~i~~~---~~~~~~~~~~p~g~vP~L~~~---g~~l~eS~aI~~yL~~~~~ 85 (148)
+|+|++++++|+++|++|+.+.++.. .++++|++.||.|+||+|+++ |..|+||.||++||+++|+
T Consensus 9 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 9 TPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred CCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 48999999999999999999999864 367899999999999999987 8999999999999999986
No 37
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.78 E-value=1.6e-18 Score=108.61 Aligned_cols=65 Identities=42% Similarity=0.780 Sum_probs=60.0
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeC-CeeeechHHHHHHHH
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIE 81 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~-g~~l~eS~aI~~yL~ 81 (148)
...||||++++++|+++|++|+.+.++...+.+++.+.||.++||+|+++ |..++||.||++||+
T Consensus 24 ~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 24 MRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 34699999999999999999999999987777889999999999999976 899999999999985
No 38
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=2e-18 Score=103.77 Aligned_cols=65 Identities=23% Similarity=0.423 Sum_probs=59.3
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
...||+|++++++|+++|++|+.+.++... ++++|++.||.|++|+|+++|..++||.||++||+
T Consensus 6 ~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 6 FPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 456999999999999999999999998642 57889999999999999999999999999999984
No 39
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.3e-18 Score=119.81 Aligned_cols=126 Identities=18% Similarity=0.214 Sum_probs=91.2
Q ss_pred CchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCCCCCCCCh--HHhh
Q 032062 20 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPP--EFAS 97 (148)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~--~~~~ 97 (148)
..+++.+|+++++.|++||++.+...+..+..+...|+||+|+|..||..|.||.||+|||+++|+ |.+.. |.+.
T Consensus 12 RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g---l~Gkt~~E~a~ 88 (206)
T KOG1695|consen 12 RGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG---LAGKTEEEEAW 88 (206)
T ss_pred chhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---cCCCCHHHHHH
Confidence 456899999999999999999999887444456678999999999999999999999999999998 66643 4443
Q ss_pred hh------ccchHH-HHHhhccCCCC--h-----hHHHHHHHHHHHHHHHHhhCCC-CccCCCCCC
Q 032062 98 LG------SKIFPS-FVNFLKSKDPN--D-----GTEQALLEELKALDEHLKTHVQ-TNLKHRYPF 148 (148)
Q Consensus 98 ~~------~~~~~~-~~~~~~~~~~~--~-----~~~~~l~~~l~~le~~L~~~~~-~fl~~~~s~ 148 (148)
++ .++... +...+...... + .......+.++.+++.|.+|++ +++|+++||
T Consensus 89 vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~ 154 (206)
T KOG1695|consen 89 VDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTW 154 (206)
T ss_pred HHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccH
Confidence 33 122222 11222211111 1 2233567889999999997754 566889997
No 40
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.76 E-value=4.9e-18 Score=102.96 Aligned_cols=65 Identities=35% Similarity=0.496 Sum_probs=60.0
Q ss_pred chHHHHHHHHHhcCCCceEEEecCC---CCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCC
Q 032062 21 PFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (148)
Q Consensus 21 p~~~~v~~~l~~~gi~~~~~~i~~~---~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~ 85 (148)
+++++++++|+++|++|+.+.++.. .++++|++.||.++||+|+++|..++||.||++||+++||
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 4689999999999999999999874 4678899999999999999999999999999999999875
No 41
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.76 E-value=3.1e-18 Score=103.23 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=59.6
Q ss_pred cCcCchHHHHHHHHHh--cCCCceEEEecCCCCchhhhhhCCCCCCcEEE-eCCeeeechHHHHHHHH
Q 032062 17 LGDCPFSQRALLTLEE--KKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIE 81 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~--~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~-~~g~~l~eS~aI~~yL~ 81 (148)
...||+|+|+|++|++ +|++|+.+.++...+.++|++.||.|+||+|+ ++|..++||.||++||+
T Consensus 6 ~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 6 SPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 4569999999999999 88999999998877788999999999999998 47899999999999985
No 42
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.75 E-value=4.8e-18 Score=101.90 Aligned_cols=66 Identities=26% Similarity=0.446 Sum_probs=56.6
Q ss_pred CcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeC-CeeeechHHHHHHHHh
Q 032062 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIEE 82 (148)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~-g~~l~eS~aI~~yL~~ 82 (148)
....||||+|+|++|+++|++|+.+.++... .....+.+|.++||+|+++ |..++||.+|++||++
T Consensus 5 ~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 5 IYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred ecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 3456999999999999999999999887543 2345678999999999875 8999999999999975
No 43
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.75 E-value=5.2e-18 Score=102.33 Aligned_cols=64 Identities=27% Similarity=0.379 Sum_probs=58.0
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCC---CCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~---~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
..||++++++++|+++|++|+.+.++.. .+.++|++.||.|+||+|+++|..++||.||++||+
T Consensus 7 ~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 7 RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 4589999999999999999999988753 246889999999999999999999999999999984
No 44
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.75 E-value=1.2e-17 Score=101.33 Aligned_cols=73 Identities=25% Similarity=0.449 Sum_probs=61.5
Q ss_pred eeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhh
Q 032062 4 EICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (148)
Q Consensus 4 ~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (148)
.||..... ...-.+||+|+|++++|+++|++|+.+.++. .+.||.|+||+|+++|..++||.+|++||+++
T Consensus 3 ~L~~~~~~--~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 3 TLYQFPRA--FGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPKGKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEecCCC--CCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 45555443 2334579999999999999999999988764 36889999999999999999999999999998
Q ss_pred CC
Q 032062 84 YP 85 (148)
Q Consensus 84 ~~ 85 (148)
|+
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 74
No 45
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.75 E-value=7.7e-18 Score=102.51 Aligned_cols=64 Identities=23% Similarity=0.476 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeC-CeeeechHHHHHHHHhhCC
Q 032062 22 FSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIEEKYP 85 (148)
Q Consensus 22 ~~~~v~~~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~-g~~l~eS~aI~~yL~~~~~ 85 (148)
+++++|++|+++|++|+.+.++..+ ++++|++.||.|+||+|+++ |..++||.||++||+++||
T Consensus 10 ~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 10 CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 4889999999999999999988754 47899999999999999986 8999999999999999886
No 46
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.75 E-value=5e-18 Score=102.17 Aligned_cols=65 Identities=25% Similarity=0.430 Sum_probs=58.1
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEe-CCeeeechHHHHHHHH
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIE 81 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~-~g~~l~eS~aI~~yL~ 81 (148)
..+||+|+|+|++|.++|++|+.+.++... +.++|.+.||.|+||+|++ +|..++||.||++||+
T Consensus 6 ~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 6 SPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 456999999999999999999999988643 4678999999999999984 7789999999999985
No 47
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.74 E-value=1e-17 Score=100.77 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=59.2
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCC---CCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~---~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
...||+|+++|++|+++|++|+.+.+++. .+.++|++.||.|+||+|+++|..++||.||++||+
T Consensus 6 ~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 6 YFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 44689999999999999999999999874 356889999999999999999999999999999984
No 48
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.74 E-value=5e-18 Score=102.08 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=57.7
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCCC-chhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHh
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~-~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~ 82 (148)
..|++|+++|++|+++|++|+.+.++.... .++|.+.||.|+||+|+++|..++||.||++||++
T Consensus 7 ~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 7 NIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred cCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 358899999999999999999999887542 34588999999999999999999999999999974
No 49
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.74 E-value=1.1e-17 Score=103.16 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=56.0
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCCC----chhhhh-h----CCCCCCcEEEeCCeeeechHHHHHHHHhhC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISDK----PQWFME-I----SPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~~----~~~~~~-~----~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 84 (148)
.+++|+++|++|+++|++|+.+.+++... .+++.+ . +|+|+||+|++||..++||.||++||+++|
T Consensus 8 ~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~~ 82 (82)
T cd03075 8 IRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARKH 82 (82)
T ss_pred CccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhcC
Confidence 46889999999999999999999987641 244442 2 299999999999999999999999999875
No 50
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.73 E-value=1.8e-17 Score=100.77 Aligned_cols=63 Identities=30% Similarity=0.430 Sum_probs=55.6
Q ss_pred CchHHHHHHHHHhcCCCceEEEecCCC---CchhhhhhCCC-CCCcEEEeC-CeeeechHHHHHHHHh
Q 032062 20 CPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPE-GKVPVVKFD-DKWVADSDVIVRIIEE 82 (148)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~-g~vP~L~~~-g~~l~eS~aI~~yL~~ 82 (148)
..++.++|++|+++|++|+.+.+++.. ++++|++.||. |+||+|+++ |..++||.||++||++
T Consensus 9 ~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 9 RGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp STTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 337999999999999999999999854 35899999999 999999999 9999999999999985
No 51
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.72 E-value=3.9e-17 Score=99.40 Aligned_cols=64 Identities=23% Similarity=0.470 Sum_probs=55.1
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeC----CeeeechHHHHHHHHhhC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD----DKWVADSDVIVRIIEEKY 84 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~----g~~l~eS~aI~~yL~~~~ 84 (148)
.||||+++|++|+++|++|+.+.++....++ .+.||.++||+|+++ |.+++||.+|++||+++.
T Consensus 9 ~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~--~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 9 TCPFCCKVRAFLDYHGIPYEVVEVNPVSRKE--IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CCHHHHHHHHHHHHCCCceEEEECCchhHHH--HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 4999999999999999999999887643333 467999999999865 789999999999999864
No 52
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.69 E-value=1.9e-16 Score=95.19 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=59.9
Q ss_pred eeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhh
Q 032062 4 EICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (148)
Q Consensus 4 ~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (148)
+||..... .....+||+|++++++|+++|++|+.+.++.. ..||.|+||+|+++|..++||.+|++||+++
T Consensus 2 ~L~~~~~~--~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~-------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 2 ELYQWGRA--FGLPSLSPECLKVETYLRMAGIPYEVVFSSNP-------WRSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred EEEEeCCC--CCCCCCCHHHHHHHHHHHhCCCceEEEecCCc-------ccCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 45555542 34456899999999999999999999988753 2789999999999999999999999999874
No 53
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.69 E-value=1.5e-16 Score=97.45 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=55.0
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhC-----CCCCCcEEEeCCeeeechHHHHHHHHhhCC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEIS-----PEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~-----p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~ 85 (148)
.|+.|++++++|+++|++|+.+.++.. +++.+.+ |.|+||+|++||..++||.||++||+++|+
T Consensus 9 ~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 9 GRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 367899999999999999999988753 3344343 589999999999999999999999999986
No 54
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.66 E-value=6.5e-16 Score=91.15 Aligned_cols=65 Identities=31% Similarity=0.484 Sum_probs=57.8
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCCCch-hhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQ-WFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~-~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
...||+|++++++|+++|++|+.+.++...... ++++.+|.+++|+|+++|..++||.+|++||+
T Consensus 6 ~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 6 FPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 345999999999999999999999998765433 58889999999999999999999999999984
No 55
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.57 E-value=1.6e-14 Score=86.86 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=56.0
Q ss_pred eeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhh
Q 032062 5 ICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (148)
Q Consensus 5 ~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (148)
+|.+.. ++-..+..+++|.|++++|++.|++|+.+.+. . . ...+|.|+||+|++||.+++||.||+.||+++
T Consensus 3 ~~~~~~-~~~~~~~~~~~~~kv~~~L~elglpye~~~~~--~--~--~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 3 LYQPYE-EEQILLPDNASCLAVQTFLKMCNLPFNVRCRA--N--A--EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred cccCCc-cCeeecCCCCCHHHHHHHHHHcCCCcEEEecC--C--c--cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 444433 23445568999999999999999999988432 1 1 12567899999999999999999999999864
No 56
>PLN02907 glutamate-tRNA ligase
Probab=99.51 E-value=2.3e-13 Score=112.41 Aligned_cols=116 Identities=11% Similarity=0.132 Sum_probs=87.1
Q ss_pred CceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEe-CCeeeechHHHHHH
Q 032062 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRI 79 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~-~g~~l~eS~aI~~y 79 (148)
|+..||..+++ .+.++.++|++.|++|+.+. .+|.|+||+|++ +|..++||.||++|
T Consensus 1 ~~~kLy~~~~S----------~~~~v~~~L~~lgv~~e~~~------------~~p~GkVPvLv~ddG~~L~ES~AIl~Y 58 (722)
T PLN02907 1 MEAKLSFPPDS----------PPLAVIAAAKVAGVPLTIDP------------SLKSGSAPTLLFSSGEKLTGTNVLLRY 58 (722)
T ss_pred CeEEEEECCCC----------ChHHHHHHHHHcCCCcEEee------------cCCCCCCcEEEECCCCEEECHHHHHHH
Confidence 55555555543 26679999999999999874 258999999984 88999999999999
Q ss_pred HHhhCCCCCCCCCh--HHhhhhccchHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 80 IEEKYPEPSLTNPP--EFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 80 L~~~~~~~~L~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
|++.+++..|+|.. +++.+.+|+..... +. ....+.+.++.||++|+.+ ++++|+++|.
T Consensus 59 La~~~p~~~L~p~d~~erAqV~qWL~~~~~--~~-------~~~~l~~~L~~LE~~L~~r-tYLvGd~lTL 119 (722)
T PLN02907 59 IARSASLPGFYGQDAFESSQVDEWLDYAPT--FS-------SGSEFENACEYVDGYLASR-TFLVGYSLTI 119 (722)
T ss_pred HHHhCCCcCCCCCCHHHHHHHHHHHHHHhh--cc-------cHHHHHHHHHHHHHHhccC-CeecCCCCCH
Confidence 99999887888853 67778888753211 10 0124667899999999764 5667888883
No 57
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.40 E-value=1.7e-12 Score=79.32 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=60.4
Q ss_pred ceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
.|.||.+.+ ||+|.+++.+|+..|++|+.+.++-....+++...++..+||++..+|..+.++..|.+||+
T Consensus 9 ~V~ly~~~~---------Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPG---------CPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCC---------CHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 466666655 99999999999999999999988765444566777888999999999999999999999984
No 58
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.36 E-value=5.6e-13 Score=96.36 Aligned_cols=78 Identities=27% Similarity=0.523 Sum_probs=68.5
Q ss_pred CCcCcCch---HHHHHHHHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCC-C
Q 032062 15 DILGDCPF---SQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPE-P 87 (148)
Q Consensus 15 ~~~~~sp~---~~~v~~~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~-~ 87 (148)
+.+++-|| ++|||++++++||+|+...|++.+ .++||...||.|.||||++++.+|+++.-|++|++++|-+ .
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger 106 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGER 106 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcccc
Confidence 44555554 799999999999999999998864 6899999999999999999999999999999999999965 4
Q ss_pred CCCCC
Q 032062 88 SLTNP 92 (148)
Q Consensus 88 ~L~p~ 92 (148)
.|+|.
T Consensus 107 ~l~pe 111 (325)
T KOG4420|consen 107 VLMPE 111 (325)
T ss_pred ccccc
Confidence 67874
No 59
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.9e-12 Score=86.40 Aligned_cols=71 Identities=25% Similarity=0.452 Sum_probs=59.0
Q ss_pred CCcCcCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEE-eCCeeeechHHHHHHHHhhCCCC
Q 032062 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEP 87 (148)
Q Consensus 15 ~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 87 (148)
..+.+||||.|+||++-.+|||++.+.+.-++ .++ ...-..++||+|+ +||..+.||..|++|+++..+.+
T Consensus 4 YIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp--~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 4 YIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP--IRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred eEeccChHHHHHHHHhhccCCChhhheeccCcccCh--hhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 34568999999999999999999998776543 333 5566678999996 68999999999999999988754
No 60
>PRK10638 glutaredoxin 3; Provisional
Probab=99.26 E-value=4.7e-11 Score=73.59 Aligned_cols=71 Identities=28% Similarity=0.405 Sum_probs=60.1
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
|.+|.+.+ ||||++++.+|+.+|++|+.++++... ..+++.+.+|.++||++..+|..+.....+..+-.
T Consensus 4 v~ly~~~~---------Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 4 VEIYTKAT---------CPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred EEEEECCC---------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 56666555 999999999999999999999987654 45678899999999999999999999988887754
Q ss_pred h
Q 032062 82 E 82 (148)
Q Consensus 82 ~ 82 (148)
+
T Consensus 75 ~ 75 (83)
T PRK10638 75 R 75 (83)
T ss_pred c
Confidence 3
No 61
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.24 E-value=7.1e-11 Score=70.77 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=58.1
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
|.||.+.+ ||+|.+++.+|+..|++|+.++++.......+.......+||++..+|..+.++..|.+||+
T Consensus 3 v~lys~~~---------Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 3 VSLFTKPG---------CPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred EEEEECCC---------CHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 55665544 99999999999999999999988765433445566777899999999999999999999984
No 62
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.15 E-value=4.7e-10 Score=67.50 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=51.1
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhh
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (148)
-..||+|.++.+.|+..|++|+.+...- -...|.|++|+|+++|..+.+|..|++||.++
T Consensus 13 ps~sp~clk~~~~Lr~~~~~~~v~~~~n-------~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 13 PSVDPECLAVLAYLKFAGAPLKVVPSNN-------PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CcCCHHHHHHHHHHHcCCCCEEEEecCC-------CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 3578999999999999999998874321 23458999999999999999999999999875
No 63
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.10 E-value=2.4e-09 Score=77.91 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=62.2
Q ss_pred CCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCCCCCCCCh
Q 032062 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPP 93 (148)
Q Consensus 14 ~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~ 93 (148)
+..-+.||||.++...|+..+||||.+.-.+ +..++.|++|.++.+|..+.+|.-|..+|.+.++-+..+|+.
T Consensus 55 ~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~-------~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~~e 127 (281)
T KOG4244|consen 55 KTCPNLSPFCLKVETFLRAYDIPYEIVDCSL-------KRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLSAE 127 (281)
T ss_pred CCCCCCChHHHHHHHHHHHhCCCceeccccc-------eeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCCCHH
Confidence 3444579999999999999999999985433 356678999999999999999999999999988765535554
Q ss_pred HHh
Q 032062 94 EFA 96 (148)
Q Consensus 94 ~~~ 96 (148)
+++
T Consensus 128 ~~a 130 (281)
T KOG4244|consen 128 QRA 130 (281)
T ss_pred HHH
Confidence 443
No 64
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.03 E-value=1.2e-09 Score=67.11 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=48.2
Q ss_pred CceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeee
Q 032062 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~ 71 (148)
|.|.+|.+.+ ||+|.+++-+|+.+||+|+.++++-.....+....++..+||+++.+|..+.
T Consensus 1 ~~v~lYt~~~---------Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 1 MRITIYTRND---------CVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred CEEEEEeCCC---------CHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 5677776655 9999999999999999999998875432233344568899999998886554
No 65
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.00 E-value=1.2e-09 Score=80.07 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=53.6
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
..||||-+||..|.++||+|+.++|++-.+.+ .+.+..++||+|..+|..+.||.+|+.-|+
T Consensus 97 etCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~SsykKVPil~~~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 97 ETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSYKKVPILLIRGEQMVDSSVIISLLA 158 (370)
T ss_pred ccCchHHHHHHHHhhcCCceEEEEecchhhhh--ccccccccccEEEeccceechhHHHHHHHH
Confidence 47999999999999999999999999865544 555578999999887888999999988764
No 66
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5.6e-09 Score=63.89 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=54.8
Q ss_pred CceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCC--Cchhhhhh-CCCCCCcEEEeCCeeeechHHHH
Q 032062 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFMEI-SPEGKVPVVKFDDKWVADSDVIV 77 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~--~~~~~~~~-~p~g~vP~L~~~g~~l~eS~aI~ 77 (148)
|.|.+|.+++ ||||.++.-+|..+|++|+.+.++... ...++.+. ++..+||++..||..+..+..+.
T Consensus 1 ~~v~iyt~~~---------CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~ 71 (80)
T COG0695 1 ANVTIYTKPG---------CPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLD 71 (80)
T ss_pred CCEEEEECCC---------CchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHH
Confidence 5677777776 999999999999999999999988776 44455544 48899999999997776544444
Q ss_pred HH
Q 032062 78 RI 79 (148)
Q Consensus 78 ~y 79 (148)
++
T Consensus 72 ~~ 73 (80)
T COG0695 72 AL 73 (80)
T ss_pred HH
Confidence 44
No 67
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.1e-09 Score=75.06 Aligned_cols=129 Identities=19% Similarity=0.233 Sum_probs=82.7
Q ss_pred cCchHHHHHHHHHhcCCC----ceEEEe--cCC-----C------C-----------------chhhhhhCCC----CCC
Q 032062 19 DCPFSQRALLTLEEKKVP----YKRHLI--NIS-----D------K-----------------PQWFMEISPE----GKV 60 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~----~~~~~i--~~~-----~------~-----------------~~~~~~~~p~----g~v 60 (148)
.|||++|..++++++|++ +..+.- +.. + . .+-|....|. -+|
T Consensus 45 aCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~Y~grfTV 124 (319)
T KOG2903|consen 45 ACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPNYTGRFTV 124 (319)
T ss_pred cCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCCCCceEEE
Confidence 699999999999999984 322211 000 0 0 0122333443 369
Q ss_pred cEEEeCC---eeeechHHHHHHHHhhCC---------CCCCCCChHHh---hhhccchHHHHH------hhccCCCChhH
Q 032062 61 PVVKFDD---KWVADSDVIVRIIEEKYP---------EPSLTNPPEFA---SLGSKIFPSFVN------FLKSKDPNDGT 119 (148)
Q Consensus 61 P~L~~~g---~~l~eS~aI~~yL~~~~~---------~~~L~p~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~ 119 (148)
|||.|-. .+-.||..|++.+.+.|. .-.|+|..=++ ...+|+++.... +....+..+..
T Consensus 125 PVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INNGVYk~GFA~~~e~Ye~~ 204 (319)
T KOG2903|consen 125 PVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINNGVYKCGFAEKQEAYEEE 204 (319)
T ss_pred EEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccCceeeeccccccchHHHH
Confidence 9998843 456799999999983332 23467765444 445677775432 22222333567
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcc-CCCCC
Q 032062 120 EQALLEELKALDEHLKTHVQTNL-KHRYP 147 (148)
Q Consensus 120 ~~~l~~~l~~le~~L~~~~~~fl-~~~~s 147 (148)
.+.+-+.|+++|++|+++.++|+ |+++|
T Consensus 205 V~~lfe~LDr~E~vL~~~~~~f~~G~~LT 233 (319)
T KOG2903|consen 205 VNQLFEALDRCEDVLGKNRKYFLCGDTLT 233 (319)
T ss_pred HHHHHHHHHHHHHHHhcccceEeeccccc
Confidence 77899999999999999876666 66776
No 68
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.90 E-value=1.2e-08 Score=60.14 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=52.3
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEEeCCeeeechHHHHHH
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~y 79 (148)
+||+|++++.+|+.+|++|+.+.++... ..+++.+.++..++|++..+|..+.++..|.+.
T Consensus 9 ~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 9 TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 3999999999999999999988876543 346677889999999999999999999887754
No 69
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.90 E-value=1.1e-08 Score=61.34 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=49.9
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEEeCCeeeechHHHH
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIV 77 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~ 77 (148)
..||+|.+++.+|+.+||+|+.+.++... ..+++.+.++.+++|++..+|..+..-....
T Consensus 9 ~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~ 69 (73)
T cd03027 9 LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLK 69 (73)
T ss_pred CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHH
Confidence 34999999999999999999999887543 3457888899999999999998887655544
No 70
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.88 E-value=1.8e-08 Score=62.22 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=62.0
Q ss_pred CceeeeeeecCCCCCCcCcCchHHHHHHHHHh-----cCCCceEEEecCCC-CchhhhhhCCC--CCCcEEEeCCeeeec
Q 032062 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEE-----KKVPYKRHLINISD-KPQWFMEISPE--GKVPVVKFDDKWVAD 72 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~-----~gi~~~~~~i~~~~-~~~~~~~~~p~--g~vP~L~~~g~~l~e 72 (148)
|.|.+|.+.+ ||+|.+++-+|+. .|++|+.+.++... ..+++...... ..||++..||..+..
T Consensus 1 m~v~iy~~~~---------C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg 71 (85)
T PRK11200 1 MFVVIFGRPG---------CPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGG 71 (85)
T ss_pred CEEEEEeCCC---------ChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcC
Confidence 7888888877 9999999999999 89999999887542 12345544433 689999999999999
Q ss_pred hHHHHHHHHhhCC
Q 032062 73 SDVIVRIIEEKYP 85 (148)
Q Consensus 73 S~aI~~yL~~~~~ 85 (148)
...|..++.+.++
T Consensus 72 ~~~~~~~~~~~~~ 84 (85)
T PRK11200 72 CTDFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988764
No 71
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=8e-09 Score=75.70 Aligned_cols=128 Identities=19% Similarity=0.299 Sum_probs=83.0
Q ss_pred cCchHHHHHHHHHhcCCC-ceEE-EecC--CC--C--------------------chhhhhhCCC----CCCcEEEeCC-
Q 032062 19 DCPFSQRALLTLEEKKVP-YKRH-LINI--SD--K--------------------PQWFMEISPE----GKVPVVKFDD- 67 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~-~~~~-~i~~--~~--~--------------------~~~~~~~~p~----g~vP~L~~~g- 67 (148)
.|||++|..++-+++|++ .-.+ .+.+ .. + .+-|....|. -+||+|.|..
T Consensus 59 aCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVPVLwDk~~ 138 (324)
T COG0435 59 ACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVPVLWDKKT 138 (324)
T ss_pred cCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEEEEEecCC
Confidence 599999999999999985 2222 2222 11 0 0123344453 3799998853
Q ss_pred -e-eeechHHHHHHHHhhCCC-----CCCCCCh---HHhhhhccchHHHHHhhc------cCCCChhHHHHHHHHHHHHH
Q 032062 68 -K-WVADSDVIVRIIEEKYPE-----PSLTNPP---EFASLGSKIFPSFVNFLK------SKDPNDGTEQALLEELKALD 131 (148)
Q Consensus 68 -~-~l~eS~aI~~yL~~~~~~-----~~L~p~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~l~~le 131 (148)
+ +-.||..|++-+...|.+ ..|+|.. +...+..|+++....-++ .++..++..+.+.+.|+.+|
T Consensus 139 ~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~lF~~Ld~lE 218 (324)
T COG0435 139 QTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVKKLFEALDKLE 218 (324)
T ss_pred CeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcccccCceeeecccchHHHHHHHHHHHHHHHHHHH
Confidence 3 346999999999877652 3578865 455666777775532211 11112556678899999999
Q ss_pred HHHhhCCCCccCCCCC
Q 032062 132 EHLKTHVQTNLKHRYP 147 (148)
Q Consensus 132 ~~L~~~~~~fl~~~~s 147 (148)
+.|+++ .+++|+++|
T Consensus 219 ~~L~~~-ryl~Gd~lT 233 (324)
T COG0435 219 QILSER-RYLTGDQLT 233 (324)
T ss_pred HHhhcC-eeeccccch
Confidence 999885 455677776
No 72
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.82 E-value=2.6e-08 Score=59.03 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=50.8
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEEeCCeee--echHHHHHHH
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWV--ADSDVIVRII 80 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~~g~~l--~eS~aI~~yL 80 (148)
.+||+|++++.+|...|++|..+.++... ..+++.+.++.+.||+++.+|..+ +++.+|.++|
T Consensus 8 ~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 8 PWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 35999999999999999999998776543 234577888999999999988877 6667776665
No 73
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.81 E-value=3.7e-08 Score=59.08 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=50.3
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCC-CCcEEEeCCeeeechHHHHHHHH
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEG-KVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g-~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
+||+|.+++-+|+.+|++|+.+.++... ..+++....+.. +||++..+|..+.....+.++-.
T Consensus 9 ~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 9 NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 4999999999999999999999887642 123444555555 89999999999999988887654
No 74
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.77 E-value=3.2e-08 Score=58.54 Aligned_cols=55 Identities=20% Similarity=0.416 Sum_probs=46.2
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEEeCCeeeec
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVAD 72 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~~g~~l~e 72 (148)
.+||+|.+++.+|..+|++|..+.++... ..+++.+.||.+++|+++++|..+..
T Consensus 8 ~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 8 PDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred CCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 45999999999999999999999887643 34568888999999999998876654
No 75
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.73 E-value=7.4e-08 Score=58.49 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=54.0
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHh
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~ 82 (148)
..||+|.+++-+|+.+|++|+.+.++... ..+++.+.++...+|++..+|..+.....+..+..+
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 34999999999999999999999987643 234566677788999999999999988888877654
No 76
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.68 E-value=6.2e-08 Score=57.92 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=40.0
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCe
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDK 68 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~ 68 (148)
..||+|++++-+|+.+|++|+.+.++-.....+..+..+...||+++.+|.
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 459999999999999999999998876543333344557789999988653
No 77
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.63 E-value=3.1e-07 Score=56.86 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=52.1
Q ss_pred cCchHHHHHHHHHhcC-----CCceEEEecCCC-CchhhhhhCCC--CCCcEEEeCCeeeechHHHHHHHHhhCC
Q 032062 19 DCPFSQRALLTLEEKK-----VPYKRHLINISD-KPQWFMEISPE--GKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~g-----i~~~~~~i~~~~-~~~~~~~~~p~--g~vP~L~~~g~~l~eS~aI~~yL~~~~~ 85 (148)
+||||.+++-+|+..+ ++|+.+.++... ..+++...... ..||++..+|..+.++..|..++.+.++
T Consensus 9 ~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~~~ 83 (86)
T TIGR02183 9 GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKENFD 83 (86)
T ss_pred CCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhccc
Confidence 4999999999999984 567777766432 12345555443 6899999999999999999999988765
No 78
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.62 E-value=5.2e-07 Score=57.35 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=50.0
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCCCch----hhhhhCCCCCCcEEEeCCeeeechHHHHHH
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQ----WFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~----~~~~~~p~g~vP~L~~~g~~l~eS~aI~~y 79 (148)
.+||||.+++-+|...|++|+.++|+...... .+.+.++..+||.+..+|..+.....+...
T Consensus 16 ~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 16 SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 35999999999999999999999998654322 345556788999999999999888776664
No 79
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.60 E-value=5.4e-07 Score=56.24 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=57.9
Q ss_pred ceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCC-chhhhhhCCCCCCcEEEeCCeeeechHHHHHHH
Q 032062 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~-~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL 80 (148)
.|.+|+|-.+ ...+||||.+++-+|...|++|+.++++.... ..++.+.+...++|++..+|..+.....+....
T Consensus 9 ~vvvf~k~~~----~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 9 PVVLFMKGTP----EEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CEEEEEcCCC----CCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 4666766432 34579999999999999999999998865421 234556677789999999999998888877754
Q ss_pred H
Q 032062 81 E 81 (148)
Q Consensus 81 ~ 81 (148)
.
T Consensus 85 ~ 85 (90)
T cd03028 85 E 85 (90)
T ss_pred H
Confidence 3
No 80
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.58 E-value=1e-07 Score=54.84 Aligned_cols=53 Identities=28% Similarity=0.509 Sum_probs=44.1
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEEeCCeee
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWV 70 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~~g~~l 70 (148)
..||+|.+++-.|+.+|++|+.++++... ..+++.+.....++|++..||..+
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 34999999999999999999999998763 345566667789999999888754
No 81
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.55 E-value=7.9e-07 Score=56.32 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=54.6
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCC-chhhhhhCCCCCCcEEEeCCeeeechHHHHHHH
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~-~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL 80 (148)
|.+|.|-. ....+||||.+++-+|..+|++|+.++++-... ...+.+.+...+||.+..+|..+.....+....
T Consensus 14 Vvvf~kg~----~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 14 VVLYMKGT----PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred EEEEEccC----CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 45554422 234679999999999999999999888753321 234456677789999999999888877776644
No 82
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.53 E-value=1.3e-06 Score=53.05 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=53.8
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCCCc----hhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHh
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISDKP----QWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~----~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~ 82 (148)
+||+|.+++-+|...+++|+.+.++..... ..+.+.+...++|++..+|..+.++..|.++..+
T Consensus 9 ~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 9 YCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 499999999999999999999998876542 2345666778999999999999999999988765
No 83
>PHA03050 glutaredoxin; Provisional
Probab=98.50 E-value=1.4e-06 Score=56.25 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=49.5
Q ss_pred CcCchHHHHHHHHHhcCC---CceEEEecCCCC----chhhhhhCCCCCCcEEEeCCeeeechHHHHH
Q 032062 18 GDCPFSQRALLTLEEKKV---PYKRHLINISDK----PQWFMEISPEGKVPVVKFDDKWVADSDVIVR 78 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi---~~~~~~i~~~~~----~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~ 78 (148)
.+||||.+++-+|...|+ +|+.++++-... .+++.+.+...+||.+..+|..+.....+..
T Consensus 21 ~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 21 FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 459999999999999999 788888875322 3456777888899999999998888776665
No 84
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.47 E-value=5.4e-07 Score=54.01 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=46.9
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCCC-chhhhhhC-CCCCCcEEE-eCCeeeech--HHHHHHH
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEIS-PEGKVPVVK-FDDKWVADS--DVIVRII 80 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~-~~~~~~~~-p~g~vP~L~-~~g~~l~eS--~aI~~yL 80 (148)
.+||+|++++..|+..|++|+.+.++-... .+.+.+.| +.+.||+++ ++|..+.++ .-+..+|
T Consensus 8 ~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 8 TWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 359999999999999999999887765432 35566776 889999996 467776544 3444444
No 85
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.37 E-value=5.4e-06 Score=50.44 Aligned_cols=65 Identities=17% Similarity=0.375 Sum_probs=52.9
Q ss_pred CcCchHHHHHHHHHhcCCC--ceEEEecCCCCch----hhhhhCCCCCCcEEEeCCeeeechHHHHHHHHh
Q 032062 18 GDCPFSQRALLTLEEKKVP--YKRHLINISDKPQ----WFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~--~~~~~i~~~~~~~----~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~ 82 (148)
.+||+|.+++-+|...+++ |+.+.++.....+ .+.+.....++|.+..+|..+.++..+.++..+
T Consensus 7 ~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 7 SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4599999999999999999 8888888754332 245556778999999999999999888887654
No 86
>PRK10824 glutaredoxin-4; Provisional
Probab=98.21 E-value=1.4e-05 Score=52.07 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=56.4
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHH
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL 80 (148)
|.+|.|-+ ....+||||.++.-+|...|++|..++++-.. -...+...+...+||-+-.+|..+..+..+....
T Consensus 17 Vvvf~Kg~----~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 17 ILLYMKGS----PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred EEEEECCC----CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 55665533 34568999999999999999999998776432 1234566777889999999999998887777653
No 87
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.13 E-value=1.6e-05 Score=47.58 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=47.3
Q ss_pred cCchHHHHHHHHHhcCCC---ceEEEecCCCCchhhhhhCCCCCCcEEEe-CCeeeechHHHHHHH
Q 032062 19 DCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRII 80 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~---~~~~~i~~~~~~~~~~~~~p~g~vP~L~~-~g~~l~eS~aI~~yL 80 (148)
.+|-|.++.+.|...+.+ ++.+..+- -..+|.|++|+|.+ +++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-------~~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-------PWLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-------CCcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 689999999999999999 77665432 23678999999999 899999999999998
No 88
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.98 E-value=3.7e-05 Score=60.63 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=50.6
Q ss_pred ceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhh-hh--------CCCCCCcEEEeCCeeeec
Q 032062 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFM-EI--------SPEGKVPVVKFDDKWVAD 72 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~-~~--------~p~g~vP~L~~~g~~l~e 72 (148)
.|.+|.+.+ ||+|.++.-+|..+||+|+.+.|+-.....++. .. ++...||++..||..+..
T Consensus 3 ~V~vys~~~---------Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igG 73 (410)
T PRK12759 3 EVRIYTKTN---------CPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGG 73 (410)
T ss_pred cEEEEeCCC---------CHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeC
Confidence 366666655 999999999999999999999987433222332 22 356789999999988877
Q ss_pred hHHHHH
Q 032062 73 SDVIVR 78 (148)
Q Consensus 73 S~aI~~ 78 (148)
-..+..
T Consensus 74 f~~l~~ 79 (410)
T PRK12759 74 YDNLMA 79 (410)
T ss_pred chHHHH
Confidence 766655
No 89
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00028 Score=45.18 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=52.1
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCCCchhh----hhhCCCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWF----MEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~----~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
.+||||++++-+|.-.|+.+..+++|-.....++ .+.....+||.+..+|..+..+..+..+-.
T Consensus 22 s~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 22 SSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred CcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 3599999999999999999999999887644333 345566799999999999988888777643
No 90
>PTZ00062 glutaredoxin; Provisional
Probab=97.74 E-value=0.00026 Score=50.73 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=54.9
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCC-chhhhhhCCCCCCcEEEeCCeeeechHHHHHHH
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~-~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL 80 (148)
|-+|+|-+ ..-.+||||+++.-+|...|++|+..+|+-... .+.+++.+...+||.+..+|..+.....+.+..
T Consensus 115 Vvvf~Kg~----~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 115 ILLFMKGS----KTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred EEEEEccC----CCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 55666632 233569999999999999999999888764322 234556667789999999999888877777643
No 91
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.71 E-value=0.00037 Score=47.38 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=49.3
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCC----CCCcEEEeCCeeeechHHHHHHH
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPE----GKVPVVKFDDKWVADSDVIVRII 80 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~----g~vP~L~~~g~~l~eS~aI~~yL 80 (148)
.||+|.+++-+|+.+||+|++++|++.. ..+++.+.... ..||.+..+|..|.....+.+.-
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L~ 81 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRLN 81 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 5899999999999999999999988753 23445555443 78999999999998888777753
No 92
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0015 Score=46.52 Aligned_cols=74 Identities=23% Similarity=0.239 Sum_probs=55.3
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCCC-CCCCCChHH
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPE-PSLTNPPEF 95 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~-~~L~p~~~~ 95 (148)
++...-|..|...|...++||.++--+- . .-.+|.|+||.|..|.+.++|-.+|+.+...+.-. .+.+..+++
T Consensus 31 l~d~ascLAVqtfLrMcnLPf~v~~~~N----a--efmSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~qk 104 (257)
T KOG3027|consen 31 LPDNASCLAVQTFLRMCNLPFNVRQRAN----A--EFMSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQK 104 (257)
T ss_pred cccchhHHHHHHHHHHcCCCceeeecCC----c--cccCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHHH
Confidence 3444559999999999999999874321 1 23569999999999999999999999999987632 223344455
Q ss_pred h
Q 032062 96 A 96 (148)
Q Consensus 96 ~ 96 (148)
+
T Consensus 105 a 105 (257)
T KOG3027|consen 105 A 105 (257)
T ss_pred H
Confidence 4
No 93
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=97.31 E-value=0.00072 Score=44.39 Aligned_cols=57 Identities=60% Similarity=0.831 Sum_probs=45.7
Q ss_pred ChHHhhhhccchHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 92 PPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
.+|.+.+.+.+++.+++++..++..++..+.+.+.|..||++|++++.+++|++||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~Tl 60 (121)
T cd03201 4 PPEKASVGSKIFSTFVGFLKSKDSNDGTEQALLDELEALEDHLKENGPFINGEKISA 60 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCH
Confidence 356778888999999999887766666778899999999999986445666788883
No 94
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.28 E-value=0.0014 Score=38.02 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=34.6
Q ss_pred cCchHHHHHHHHHhc-----CCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeee
Q 032062 19 DCPFSQRALLTLEEK-----KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~-----gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~ 71 (148)
+||+|.+++-.|+.. ++++..++++ . .+++.+......+|++..+|..++
T Consensus 10 ~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~-~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 10 TCPYCPDAVQAANRIAALNPNISAEMIDAA--E-FPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred CCCCcHHHHHHHHHHHHhCCceEEEEEEcc--c-CHhHHHHcCCcccCEEEECCEEEE
Confidence 499999999888764 4555555443 2 244555666678999998887654
No 95
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.84 E-value=0.0066 Score=37.99 Aligned_cols=57 Identities=25% Similarity=0.388 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCC----CCCCcEEEeCCeeeechHHHHH
Q 032062 22 FSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISP----EGKVPVVKFDDKWVADSDVIVR 78 (148)
Q Consensus 22 ~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p----~g~vP~L~~~g~~l~eS~aI~~ 78 (148)
.|++++.+|.-+||+|+.++|+.+. ..++..+..+ ...+|-+..+|..+.....+..
T Consensus 18 ~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 18 RQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred HHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 4899999999999999999998754 2344555543 3789999889988888766554
No 96
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=96.82 E-value=0.02 Score=36.90 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=55.1
Q ss_pred eeecCCCCCCc---CcCchHHHHHHHHHhc---CCCceEEEecCCCCchhhhhhC--CCCCCcEEEeC-Ce---------
Q 032062 7 VKAAVGAPDIL---GDCPFSQRALLTLEEK---KVPYKRHLINISDKPQWFMEIS--PEGKVPVVKFD-DK--------- 68 (148)
Q Consensus 7 ~~~~~~~~~~~---~~sp~~~~v~~~l~~~---gi~~~~~~i~~~~~~~~~~~~~--p~g~vP~L~~~-g~--------- 68 (148)
.+++..++..- .+||.|..+.=+|+.. .-..+++.|+.........+.- ..+..|+|+.+ |.
T Consensus 8 L~pgF~D~~~PG~~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~ 87 (112)
T PF11287_consen 8 LRPGFEDPAGPGQRFYCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSH 87 (112)
T ss_pred ecCCCcCCCCCCceEECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCccccccc
Confidence 44554443333 5899999999998753 2346667777765444454432 25789999863 33
Q ss_pred ----eeechHHHHHHHHhhCCC
Q 032062 69 ----WVADSDVIVRIIEEKYPE 86 (148)
Q Consensus 69 ----~l~eS~aI~~yL~~~~~~ 86 (148)
.|.++..|++||+++|+-
T Consensus 88 ~~~rfi~d~~~I~~~La~r~g~ 109 (112)
T PF11287_consen 88 GGRRFIDDPRRILRYLAERHGF 109 (112)
T ss_pred CCeEEeCCHHHHHHHHHHHcCC
Confidence 689999999999999973
No 97
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.018 Score=36.33 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=54.1
Q ss_pred ceeeeeeecCCCCCCcCcCchHHHHHHHHHhcC-CCceEEEecCCC-CchhhhhhCCCCCCcEEEeCCeeeechHHHHHH
Q 032062 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKK-VPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~g-i~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~y 79 (148)
.|.||+|-++ ..+-|.|+.++--+|...| ++|..+.|-.+. -.+.+++.+-=-++|-|-.+|..+..|..|.+.
T Consensus 16 ~VvLFMKGtp----~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em 91 (105)
T COG0278 16 PVVLFMKGTP----EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREM 91 (105)
T ss_pred ceEEEecCCC----CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHH
Confidence 4788999774 5778999999999999999 566666553321 122233334346899998899999888877765
Q ss_pred HH
Q 032062 80 IE 81 (148)
Q Consensus 80 L~ 81 (148)
..
T Consensus 92 ~q 93 (105)
T COG0278 92 YQ 93 (105)
T ss_pred HH
Confidence 43
No 98
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.62 E-value=0.0051 Score=41.00 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.8
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCC
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~ 45 (148)
|.||.+++ ||+|++++-.|..+||+|+.+.+.-.
T Consensus 2 i~iY~~~~---------C~~C~ka~~~L~~~gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPS---------CTSCRKAKAWLEEHDIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCC---------ChHHHHHHHHHHHcCCCcEEeeccCC
Confidence 56666655 99999999999999999999988543
No 99
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.55 E-value=0.01 Score=35.57 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=33.2
Q ss_pred CchHHHHHHHH----HhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeech
Q 032062 20 CPFSQRALLTL----EEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADS 73 (148)
Q Consensus 20 sp~~~~v~~~l----~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS 73 (148)
||+|.++.-++ ...|+.++.+.+ ...++. .......+|+++.||...+..
T Consensus 10 C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 10 CPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp CTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 99998666644 455777766654 234444 566678999999888765543
No 100
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.49 E-value=0.024 Score=33.90 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=35.1
Q ss_pred cCchHHHH----HHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeee
Q 032062 19 DCPFSQRA----LLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (148)
Q Consensus 19 ~sp~~~~v----~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~ 71 (148)
+||.|..+ .-+++..|++++.+.++- .++ ...-....+|++..+|..+.
T Consensus 9 ~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~-a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 9 GCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNE-ILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred CCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHH-HHHcCCCcCCEEEECCEEEE
Confidence 49999888 557777888888888871 222 33345679999988886553
No 101
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.19 Score=38.08 Aligned_cols=58 Identities=28% Similarity=0.245 Sum_probs=46.4
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEe-CCeeeechHHHHHHHHhh
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIEEK 83 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~-~g~~l~eS~aI~~yL~~~ 83 (148)
-||-|.++.+.+...+-+.+++..+- -...|.|++|+|+. +|..+..-.-|+.||...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-------~~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~ 74 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-------PWRSPSGKLPYLITDNGTKVAGPVKIVQFLKKN 74 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-------CCCCCCCCCCeEEecCCceeccHHHHHHHHHHh
Confidence 58999999999999996666654432 23457899999976 569999999999999874
No 102
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=96.41 E-value=0.012 Score=39.45 Aligned_cols=42 Identities=36% Similarity=0.684 Sum_probs=33.8
Q ss_pred HhhhhccchHHHHHhhccCCC--ChhHHHHHHHHHHHHHHHHhh
Q 032062 95 FASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT 136 (148)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~le~~L~~ 136 (148)
...+.+.+|+.+..++.++.+ .+...+.+.+.|+.||++|.+
T Consensus 4 ~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~ 47 (134)
T cd03198 4 SNTAGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNS 47 (134)
T ss_pred hhhhHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHcc
Confidence 345677889999999887643 466778999999999999986
No 103
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.40 E-value=0.0066 Score=39.23 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=25.3
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCC
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISD 46 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~ 46 (148)
..||+|++++-.|+.+|++|+.+.+.-..
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVEEP 35 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccCCc
Confidence 34999999999999999999999886543
No 104
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.34 E-value=0.011 Score=38.40 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=28.3
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCC
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~ 45 (148)
|.+|...+ ||+|.+++-.|+.+|++|+.+.+.-.
T Consensus 2 i~iY~~~~---------C~~c~ka~~~L~~~gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPS---------CSSCRKAKQWLEEHQIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCC---------CHHHHHHHHHHHHCCCceEEEecCCC
Confidence 55665555 99999999999999999999988543
No 105
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.31 E-value=0.0096 Score=37.91 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=24.7
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCC
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINIS 45 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~ 45 (148)
..||+|++++-.|+.+|++|+.+.+.-.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLKE 34 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeeccC
Confidence 3499999999999999999999988643
No 106
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.16 E-value=0.016 Score=38.62 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=28.9
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCC
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~ 46 (148)
|.+|..++ |+.|++++-.|..+|++|+.+.+.-..
T Consensus 2 i~iY~~~~---------C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTAS---------CASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCC---------ChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 55555555 999999999999999999999886544
No 107
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=95.89 E-value=0.025 Score=37.72 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=24.8
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCCC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINISD 46 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~~ 46 (148)
.|+.|++++-.|..+|++|+.+.+.-..
T Consensus 9 ~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 9 SCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 3999999999999999999999886543
No 108
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=95.81 E-value=0.023 Score=35.65 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=40.2
Q ss_pred HHHHHhhCCCCCCCCC--hHHhhhhccchHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 77 VRIIEEKYPEPSLTNP--PEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 77 ~~yL~~~~~~~~L~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+|||++.- +|.|. .+.+.++.|+.-....+.. ...+++.+.++.+|++|+++ ++++|+++|.
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~------~~~~~~~~~l~~le~~L~~~-~fl~Gd~~ti 64 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE------GSSKEKAAVLRALNSALGRS-PWLVGSEFTV 64 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHcCC-CccCCCCCCH
Confidence 47899872 47774 3677888887633222221 13345667888999999764 4566778883
No 109
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.56 E-value=0.032 Score=30.44 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=32.1
Q ss_pred CcCchHHHHHHHHH-----hcCCCceEEEecCCCCchhhhhhCCCCCCcEEEe
Q 032062 18 GDCPFSQRALLTLE-----EKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF 65 (148)
Q Consensus 18 ~~sp~~~~v~~~l~-----~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~ 65 (148)
.+||+|.+.+..+. ..++.+..+.++............+.+.+|+++.
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 7 PWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 45999999999998 3455555555544333332335678899999864
No 110
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.52 E-value=0.023 Score=36.96 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.5
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCC
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINIS 45 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~ 45 (148)
..||+|++++-.|+.+|++|+.+.+.-.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (117)
T TIGR01617 7 PNCTTCKKARRWLEANGIEYQFIDIGED 34 (117)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEecCCC
Confidence 3499999999999999999999987543
No 111
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.44 E-value=0.095 Score=31.70 Aligned_cols=54 Identities=24% Similarity=0.530 Sum_probs=37.1
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcC--CCceEEEecCCCCchhhhhhCCCCCCcEEEeCC
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKK--VPYKRHLINISDKPQWFMEISPEGKVPVVKFDD 67 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~g--i~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g 67 (148)
|.||-+++ |+-|..+.-+|+... .+++...+|....+.++.+-. -.||||..+|
T Consensus 2 l~l~~k~~---------C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPG---------CHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SS---------SHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC--TSTSEEEETT
T ss_pred EEEEcCCC---------CChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc--CCCCEEEEcC
Confidence 55666666 999999999998654 456666677665444333332 4899998777
No 112
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=95.36 E-value=0.032 Score=32.29 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
++.++.+.+.|+.+|++|+++ ++++|+++|.
T Consensus 5 ~~~~~~~~~~l~~le~~L~~~-~fl~G~~~s~ 35 (69)
T PF13410_consen 5 ERARAQLEAALDALEDHLADG-PFLFGDRPSL 35 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-SBTTBSS--H
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCCCCCCH
Confidence 456778999999999999876 4777889883
No 113
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=94.91 E-value=0.12 Score=32.76 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=41.9
Q ss_pred CceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCCC-chhhhhhC---------CCCCCcEEEeCCeee
Q 032062 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEIS---------PEGKVPVVKFDDKWV 70 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~-~~~~~~~~---------p~g~vP~L~~~g~~l 70 (148)
|-|.+|+.-.++ ...---.++++..+|+.++|+|+.++|..... ..+.++.. +....|-|..||..+
T Consensus 1 m~I~vy~ss~sg---~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 1 MVIKVYISSISG---SREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYC 77 (99)
T ss_dssp -SEEEEE-SS-S---SHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEE
T ss_pred CEEEEEEecccC---CHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEE
Confidence 778888865544 11112247899999999999999999887542 23334333 222446788888777
Q ss_pred echHHHH
Q 032062 71 ADSDVIV 77 (148)
Q Consensus 71 ~eS~aI~ 77 (148)
.+=..+-
T Consensus 78 Gdye~f~ 84 (99)
T PF04908_consen 78 GDYEDFE 84 (99)
T ss_dssp EEHHHHH
T ss_pred eeHHHHH
Confidence 6554443
No 114
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.62 E-value=0.26 Score=29.19 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=33.0
Q ss_pred cCchHHHHHHHHHh----cCCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCe
Q 032062 19 DCPFSQRALLTLEE----KKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDK 68 (148)
Q Consensus 19 ~sp~~~~v~~~l~~----~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~ 68 (148)
+||+|..+.-.++. .+..+....||.... ++..+......+|++..+|.
T Consensus 10 ~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 10 TCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN-PQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred CCcchHHHHHHHHHHHHHhcCceEEEEEeCccC-HHHHHHcCCccCCEEEECCE
Confidence 49999988888753 344466667776543 33445556678999987775
No 115
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.51 E-value=0.26 Score=30.44 Aligned_cols=50 Identities=12% Similarity=-0.028 Sum_probs=32.8
Q ss_pred cCchHHHHHHHHHhc-----CCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeee
Q 032062 19 DCPFSQRALLTLEEK-----KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~-----gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~ 71 (148)
+||+|..+.-++... ++.++.+.++ . .++......-..+|+++.+|..+.
T Consensus 23 ~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~-~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 23 SCHNCPDVVQALNLMAVLNPNIEHEMIDGA--L-FQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred CCCCcHHHHHHHHHHHHHCCCceEEEEEhH--h-CHHHHHHcCCccCCEEEECCEEEE
Confidence 499998877776543 4555555543 2 344555666778999988886554
No 116
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.44 Score=31.24 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=52.3
Q ss_pred eeeeecCCCCCCcCcCchHHHHHH----HHHhcCCCceEEEecCCCCchhhhhhCCCC-------CCcEEE--e-CCeee
Q 032062 5 ICVKAAVGAPDILGDCPFSQRALL----TLEEKKVPYKRHLINISDKPQWFMEISPEG-------KVPVVK--F-DDKWV 70 (148)
Q Consensus 5 ~~~~~~~~~~~~~~~sp~~~~v~~----~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g-------~vP~L~--~-~g~~l 70 (148)
++...+.+..-+-.|||.|.++.= +|.+.+-+...+.+..++.+.|--..||++ -||+|. . .+..+
T Consensus 30 vlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL 109 (128)
T KOG3425|consen 30 VLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRL 109 (128)
T ss_pred EEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccc
Confidence 344566656778889999987654 455667778888888887766655555554 478884 2 34567
Q ss_pred echHHHHHHHHh
Q 032062 71 ADSDVIVRIIEE 82 (148)
Q Consensus 71 ~eS~aI~~yL~~ 82 (148)
.+..+-...|.+
T Consensus 110 ~~~q~~~~~Lve 121 (128)
T KOG3425|consen 110 DGLQCLNDHLVE 121 (128)
T ss_pred hHhHhhHHHHHH
Confidence 777766666654
No 117
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.21 Score=29.94 Aligned_cols=55 Identities=29% Similarity=0.202 Sum_probs=39.6
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCC-----------CCchhhhh--hCCCCCCcEE-EeCCeeee
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINIS-----------DKPQWFME--ISPEGKVPVV-KFDDKWVA 71 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~-----------~~~~~~~~--~~p~g~vP~L-~~~g~~l~ 71 (148)
-..||-|....-.|+-.+++|+.++|.-. +..++|-. .|..--+|+| ++||.++.
T Consensus 9 sn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 9 SNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred cccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 34699999999999999999999998643 12455543 3444568988 56666554
No 118
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=93.97 E-value=0.14 Score=32.67 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=25.6
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecCCC
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~ 46 (148)
...|+.|++++-.|..+|++|+.+.+.-..
T Consensus 6 ~~~C~~crka~~~L~~~~i~~~~~di~~~p 35 (105)
T cd03035 6 IKNCDTVKKARKWLEARGVAYTFHDYRKDG 35 (105)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEecccCC
Confidence 345999999999999999999999886543
No 119
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=93.95 E-value=0.19 Score=32.68 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=30.5
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhC-CCCccCCCCCC
Q 032062 103 FPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTH-VQTNLKHRYPF 148 (148)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~-~~~fl~~~~s~ 148 (148)
.+.+...+......+...+.+.+.|+.+|+.|+++ +++++|+++|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~ 63 (124)
T cd03184 17 VSAFYKLLGAPSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGM 63 (124)
T ss_pred hHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccH
Confidence 33334444332233567778999999999999863 45666778884
No 120
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=93.75 E-value=0.13 Score=34.54 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 118 GTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
...+.+.+.|+.+|++|+++ .+++|+++|+
T Consensus 37 ~~~~~l~~~l~~LE~~L~~~-~yl~Gd~~Tl 66 (142)
T cd03190 37 EAVDELFEALDRLEELLSDR-RYLLGDRLTE 66 (142)
T ss_pred HHHHHHHHHHHHHHHHHccC-CeeeCCCccH
Confidence 45667899999999999754 5666788884
No 121
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=93.64 E-value=0.11 Score=33.98 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHhhC--CCCccCCCCCC
Q 032062 118 GTEQALLEELKALDEHLKTH--VQTNLKHRYPF 148 (148)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~--~~~fl~~~~s~ 148 (148)
...+.+.+.|..+|+.|+++ +++++|+++||
T Consensus 35 ~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ 67 (126)
T cd03210 35 DYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISF 67 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccH
Confidence 34556888999999999875 34666778986
No 122
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=93.61 E-value=0.22 Score=32.27 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=24.0
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINIS 45 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~ 45 (148)
.|+-|++++-.|+.+|++|+.+.+.-.
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~d~~~~ 35 (113)
T cd03033 9 GCANNARQKALLEAAGHEVEVRDLLTE 35 (113)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehhcC
Confidence 399999999999999999999987544
No 123
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=93.38 E-value=0.13 Score=31.40 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 118 GTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
...+.+.+.|+.+|+.|++ +++++|+++|+
T Consensus 28 ~~~~~~~~~l~~le~~l~~-~~~l~G~~~t~ 57 (95)
T PF00043_consen 28 EARAKVPRYLEVLEKRLKG-GPYLVGDKLTI 57 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SSSSSBSS-CH
T ss_pred HHHHHHHHHHHHHHHHHcC-CCeeeccCCch
Confidence 3456788899999999984 45677888985
No 124
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=92.84 E-value=0.24 Score=30.83 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCC-CccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQ-TNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~-~fl~~~~s~ 148 (148)
+...+++.+.+..+|++|+.+++ +++|+++|.
T Consensus 34 ~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~ 66 (99)
T PF14497_consen 34 DFSREELPKALKILEKHLAERGGDFLVGDKPTL 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--H
T ss_pred HhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCH
Confidence 45677899999999999999865 667888873
No 125
>PHA02125 thioredoxin-like protein
Probab=92.46 E-value=0.46 Score=28.09 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=32.7
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEecCCCCchhhhhhCCCCCCcEEEe
Q 032062 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF 65 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~ 65 (148)
.+||.|.++.-.|+ +++++...+|... .+++.+......+|++.+
T Consensus 8 ~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 8 EWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHIRSLPTLVN 52 (75)
T ss_pred CCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCCceeCeEEC
Confidence 36999998888775 4567777776543 345667777789999984
No 126
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=92.31 E-value=0.21 Score=31.05 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
++...++.+.++.+|+.|+++ ++++|+++|+
T Consensus 32 ~~~~~~~~~~l~~le~~L~~~-~~l~G~~~t~ 62 (100)
T cd03206 32 ETAIARAHRLLRLLEEHLAGR-DWLAGDRPTI 62 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CccCCCCCCH
Confidence 456778999999999999865 5677888884
No 127
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=92.12 E-value=0.55 Score=30.66 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=28.1
Q ss_pred CceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCC
Q 032062 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~ 45 (148)
|.|.||-.++ |.=|++++-.|+.+||+|+.+.+--.
T Consensus 1 ~~itiy~~p~---------C~t~rka~~~L~~~gi~~~~~~y~~~ 36 (117)
T COG1393 1 MMITIYGNPN---------CSTCRKALAWLEEHGIEYTFIDYLKT 36 (117)
T ss_pred CeEEEEeCCC---------ChHHHHHHHHHHHcCCCcEEEEeecC
Confidence 4455665555 77789999999999999999877543
No 128
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=91.77 E-value=0.13 Score=33.66 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=14.0
Q ss_pred CCcEEEe--CCeeeechHHHHHHHHhhCCC
Q 032062 59 KVPVVKF--DDKWVADSDVIVRIIEEKYPE 86 (148)
Q Consensus 59 ~vP~L~~--~g~~l~eS~aI~~yL~~~~~~ 86 (148)
.-|-|.+ +|..+.|+.||+||+.+-|-+
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 4477744 679999999999999998764
No 129
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=91.35 E-value=0.45 Score=30.70 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 119 TEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 119 ~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
..+.+.+.|..||++|+++ ++++|+++|+
T Consensus 36 ~~~~~~~~l~~le~~L~~~-~~l~G~~~T~ 64 (121)
T cd03209 36 YLAKLPDKLKLFSDFLGDR-PWFAGDKITY 64 (121)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCcCCCCccH
Confidence 4456788999999999764 5677888985
No 130
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=91.28 E-value=0.33 Score=29.47 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+...+.+.+.++.+|+.|+++ ++++|+++|+
T Consensus 35 ~~~~~~~~~~~~~l~~~L~~~-~~~~g~~~t~ 65 (100)
T cd00299 35 EEAREELAAALAALEKLLAGR-PYLAGDRFSL 65 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CCCCCCCcCH
Confidence 345667899999999999764 5677888884
No 131
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=91.23 E-value=0.3 Score=30.54 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 119 TEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 119 ~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
..+.+.+.|+.+|+.|+++ ++++|+++|+
T Consensus 44 ~~~~~~~~l~~lE~~L~~~-~~l~g~~~t~ 72 (110)
T cd03180 44 SLAAWAKLMAILDAQLAGR-PYLAGDRFTL 72 (110)
T ss_pred HHHHHHHHHHHHHHHhCCC-CcccCCCCCH
Confidence 4567899999999999763 5667888884
No 132
>PRK10026 arsenate reductase; Provisional
Probab=90.88 E-value=0.72 Score=31.16 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=27.6
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCC
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~ 45 (148)
+.||..++ |.=|++++-.|+.+|++|+.+.+--.
T Consensus 4 i~iY~~p~---------Cst~RKA~~wL~~~gi~~~~~d~~~~ 37 (141)
T PRK10026 4 ITIYHNPA---------CGTSRNTLEMIRNSGTEPTIIHYLET 37 (141)
T ss_pred EEEEeCCC---------CHHHHHHHHHHHHCCCCcEEEeeeCC
Confidence 55555555 88899999999999999999987543
No 133
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=1.3 Score=32.13 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=55.0
Q ss_pred ceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCC-CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHH
Q 032062 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL 80 (148)
.|-||+|-++ ..+-|.|++.+.-+|...|++|...+|--+. -.+-.++.+-=-+.|-|-.+|..+..+..|...+
T Consensus 140 ~v~lFmKG~p----~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 140 PVMLFMKGTP----EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred eEEEEecCCC----CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 3678888764 4566999999999999999999988775432 1222344444568898988998888777766554
Q ss_pred H
Q 032062 81 E 81 (148)
Q Consensus 81 ~ 81 (148)
.
T Consensus 216 ~ 216 (227)
T KOG0911|consen 216 E 216 (227)
T ss_pred h
Confidence 4
No 134
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=90.78 E-value=0.36 Score=30.39 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 119 TEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 119 ~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
..+.+.+.++.+|++|+++ ++++|+++|+
T Consensus 44 ~~~~~~~~l~~le~~l~~~-~~l~G~~~t~ 72 (114)
T cd03188 44 ARERLAARLAYLDAQLAGG-PYLLGDRFSV 72 (114)
T ss_pred HHHHHHHHHHHHHHHhcCC-CeeeCCCcch
Confidence 4557889999999999743 4566788985
No 135
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=90.31 E-value=0.54 Score=28.43 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 118 GTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+..+++.+.++.+|+.|+++ ++++|+++|.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~-~yl~Gd~~t~ 48 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDK-KFFFGDKPTS 48 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CccCCCCCCH
Confidence 45667899999999999864 5677888883
No 136
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.22 E-value=0.31 Score=39.74 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=41.3
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCC---CceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeech----HH
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKV---PYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADS----DV 75 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi---~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS----~a 75 (148)
|.+|++.+ ||||-.+.-+++...+ ..+...|+-. ..+++...-....||.+..+|..+.+. ..
T Consensus 120 i~~fv~~~---------Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~-~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~ 189 (517)
T PRK15317 120 FETYVSLS---------CHNCPDVVQALNLMAVLNPNITHTMIDGA-LFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEE 189 (517)
T ss_pred EEEEEcCC---------CCCcHHHHHHHHHHHHhCCCceEEEEEch-hCHhHHHhcCCcccCEEEECCcEEEecCCCHHH
Confidence 55666665 8888776666644322 2222333332 345566666678999998877665542 34
Q ss_pred HHHHHHhh
Q 032062 76 IVRIIEEK 83 (148)
Q Consensus 76 I~~yL~~~ 83 (148)
+++.+.+.
T Consensus 190 ~~~~~~~~ 197 (517)
T PRK15317 190 ILAKLDTG 197 (517)
T ss_pred HHHHHhcc
Confidence 55555543
No 137
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.15 E-value=0.27 Score=40.01 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=40.8
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCC---ceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeech----HH
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADS----DV 75 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~---~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~eS----~a 75 (148)
|++|++.+ ||||-.+.-+++...+. .+...++-. .-+++...-....||.+..+|..+.+. ..
T Consensus 121 i~~f~~~~---------Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~-~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~ 190 (515)
T TIGR03140 121 FETYVSLT---------CQNCPDVVQALNQMALLNPNISHTMIDGA-LFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAE 190 (515)
T ss_pred EEEEEeCC---------CCCCHHHHHHHHHHHHhCCCceEEEEEch-hCHHHHHhcCCcccCEEEECCcEEEecCCCHHH
Confidence 55666666 88887776666543322 222223332 234556666678999998877665543 24
Q ss_pred HHHHHHhh
Q 032062 76 IVRIIEEK 83 (148)
Q Consensus 76 I~~yL~~~ 83 (148)
+++.+.+.
T Consensus 191 ~~~~l~~~ 198 (515)
T TIGR03140 191 LLEKLEET 198 (515)
T ss_pred HHHHHhhc
Confidence 44555443
No 138
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=90.14 E-value=0.61 Score=30.11 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhCC---------CCccCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHV---------QTNLKHRYP 147 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~---------~~fl~~~~s 147 (148)
+...+.+.+.|+.+|++|.++. .+++|++||
T Consensus 28 ~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~T 67 (111)
T cd03204 28 KKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFT 67 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCC
Confidence 3466788999999999998653 256677888
No 139
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=90.11 E-value=0.41 Score=30.50 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 119 TEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 119 ~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
....+.+.|+.+|++|+++ .+++|+++|+
T Consensus 55 ~~~~~~~~l~~le~~L~~~-~~l~Gd~~t~ 83 (119)
T cd03189 55 INPELKKHLDFLEDRLAKK-GYFVGDKLTA 83 (119)
T ss_pred HhHHHHHHHHHHHHHHccC-CCCCCCCCCH
Confidence 3446888999999999764 5677888984
No 140
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=89.67 E-value=0.91 Score=29.75 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=33.5
Q ss_pred eeecCCCCCCcCcCchHHHHHHHHHh--cCC--CceEEEecCCCCch------hhhh--hCCCCCCcEEEe--CCeeeec
Q 032062 7 VKAAVGAPDILGDCPFSQRALLTLEE--KKV--PYKRHLINISDKPQ------WFME--ISPEGKVPVVKF--DDKWVAD 72 (148)
Q Consensus 7 ~~~~~~~~~~~~~sp~~~~v~~~l~~--~gi--~~~~~~i~~~~~~~------~~~~--~~p~g~vP~L~~--~g~~l~e 72 (148)
...+.+ .-+..|||.|.++.-.+.. ... ....+.+...+++. .|++ .-....||+|+- ++..|.|
T Consensus 26 F~gs~d-~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 26 FTGSKD-ETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp EE--B--TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEH
T ss_pred EEccCC-CCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccch
Confidence 334444 6788899999988866643 223 45555555554322 2333 122467999963 4566766
Q ss_pred hHH
Q 032062 73 SDV 75 (148)
Q Consensus 73 S~a 75 (148)
...
T Consensus 105 ~e~ 107 (119)
T PF06110_consen 105 EEC 107 (119)
T ss_dssp HHH
T ss_pred hhh
Confidence 543
No 141
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.60 E-value=1.1 Score=36.86 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=33.3
Q ss_pred CchHHHHHHHH----Hhc-CCCceEEEecCCCCchhhhhhCCCCCCcEEEeCCeeeec
Q 032062 20 CPFSQRALLTL----EEK-KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVAD 72 (148)
Q Consensus 20 sp~~~~v~~~l----~~~-gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~~g~~l~e 72 (148)
||||-.+.-++ .+. +|..+.+++.. .++..+.-....||.++.||..+.+
T Consensus 488 C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~---~~~~~~~~~v~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 488 CTLCPDVVLAAQRIASLNPNVEAEMIDVSH---FPDLKDEYGIMSVPAIVVDDQQVYF 542 (555)
T ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEECcc---cHHHHHhCCceecCEEEECCEEEEe
Confidence 88886655443 444 67777776644 2455656667899999988865543
No 142
>PRK10853 putative reductase; Provisional
Probab=89.57 E-value=0.88 Score=29.69 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.2
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINIS 45 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~ 45 (148)
.|.=|++++-.|+.+|++|+.+++--.
T Consensus 9 ~C~t~rkA~~~L~~~~i~~~~~d~~k~ 35 (118)
T PRK10853 9 NCDTIKKARRWLEAQGIDYRFHDYRVD 35 (118)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehccC
Confidence 388899999999999999999987543
No 143
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=89.57 E-value=0.47 Score=30.33 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=25.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 116 NDGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 116 ~~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
.+...+.+.+.|+.+|++|+++ ++++|+++|+
T Consensus 36 ~~~~~~~~~~~l~~le~~L~~~-~~l~G~~~s~ 67 (118)
T cd03177 36 PEEKLDKLEEALDFLETFLEGS-DYVAGDQLTI 67 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHccC-CeeCCCCcCH
Confidence 3567778999999999999754 5677888884
No 144
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=89.15 E-value=0.71 Score=29.06 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 118 GTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
.....+.+.++.+|+.|+++ ++++|+++|+
T Consensus 40 ~~~~~~~~~l~~le~~L~~~-~~l~G~~~t~ 69 (113)
T cd03178 40 RYTNEAKRLYGVLDKRLAGR-DYLAGDEYSI 69 (113)
T ss_pred HHHHHHHHHHHHHHHHHccC-CcccCCCCCe
Confidence 35567889999999999753 5666788885
No 145
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=88.86 E-value=0.7 Score=28.58 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 118 GTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
...+.+.+.++.+|+.|+++ +++.|+++|+
T Consensus 43 ~~~~~~~~~l~~le~~L~~~-~~l~g~~~sl 72 (105)
T cd03179 43 FLRERGHAALAVLEAHLAGR-DFLVGDALTI 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHccC-ccccCCCCCH
Confidence 45667888999999999653 4566788884
No 146
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=88.79 E-value=0.63 Score=29.47 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 119 TEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 119 ~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
..+.+.+.|+.+|++|+++ ++++|+++|.
T Consensus 46 ~~~~~~~~l~~le~~L~~~-~~l~G~~~t~ 74 (118)
T cd03187 46 NEEKLKKVLDVYEARLSKS-KYLAGDSFTL 74 (118)
T ss_pred HHHHHHHHHHHHHHHcccC-cccCCCCccH
Confidence 4567889999999999753 5667888884
No 147
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=88.74 E-value=0.76 Score=29.97 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+...+.+.+.|+.+|+.|+++ .+++|+++|+
T Consensus 57 ~~~~~~~~~~l~~l~~~L~~~-~fl~Gd~~t~ 87 (124)
T cd03202 57 EAALANFRAALEPLRATLKGQ-PFLGGAAPNY 87 (124)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CccCCCCCch
Confidence 456778999999999999763 4566789985
No 148
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=88.60 E-value=0.83 Score=28.55 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+...+.+.+.|+.+|+.|++ +.+++|++||.
T Consensus 34 ~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~ 64 (107)
T cd03186 34 EKARKELRESLLALAPVFAH-KPYFMSEEFSL 64 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCcccCCCCcH
Confidence 34566789999999999975 35566778873
No 149
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=88.46 E-value=0.72 Score=29.76 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 119 TEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 119 ~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
..+.+.+.+..+|+.|.+.+++++|+++|+
T Consensus 46 ~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ 75 (126)
T cd03183 46 AEENLEESLDLLENYFLKDKPFLAGDEISI 75 (126)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCCCCH
Confidence 455788999999998544334566888984
No 150
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=88.43 E-value=0.7 Score=29.68 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+...+.+.+.++.+|+.|+++ ++++|+++|+
T Consensus 40 ~~~~~~i~~~l~~le~~L~~~-~yl~Gd~~tl 70 (115)
T cd03196 40 EEYRQQAEAFLKDLEARLQQH-SYLLGDKPSL 70 (115)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CccCCCCccH
Confidence 445668999999999999864 5666788884
No 151
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=88.16 E-value=1.6 Score=28.80 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=23.3
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINIS 45 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~ 45 (148)
.|.=|++++-.|+.+|++|+.+++.-.
T Consensus 10 ~Cst~RKA~~~L~~~gi~~~~~d~~~~ 36 (126)
T TIGR01616 10 GCANNARQKAALKASGHDVEVQDILKE 36 (126)
T ss_pred CCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence 388889999999999999999987543
No 152
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=88.09 E-value=0.75 Score=29.44 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCccCCCCCC
Q 032062 120 EQALLEELKALDEHLKTH-VQTNLKHRYPF 148 (148)
Q Consensus 120 ~~~l~~~l~~le~~L~~~-~~~fl~~~~s~ 148 (148)
.+.+.+.|+.+|++|+++ +++++|+++|+
T Consensus 46 ~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 75 (121)
T cd03191 46 RHWIARGFAALEKLLAQTAGKFCFGDEPTL 75 (121)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeecCCcCCH
Confidence 345788899999999863 34666888884
No 153
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=87.98 E-value=0.9 Score=28.75 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 118 GTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+....+.+.|..+|+.|+++ ++++|+++|.
T Consensus 49 ~~~~~l~~~l~~le~~L~~~-~~l~gd~~t~ 78 (117)
T cd03182 49 RSKARAADFLAYLDTRLAGS-PYVAGDRFTI 78 (117)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcccCCCCCH
Confidence 35567889999999999764 4677888873
No 154
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=87.89 E-value=0.79 Score=28.43 Aligned_cols=31 Identities=19% Similarity=0.121 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+.....+.+.++.+|++|+++ ++++|+++|.
T Consensus 29 ~~~~~~~~~~l~~le~~l~~~-~~l~g~~~t~ 59 (103)
T cd03207 29 MAGFGSYDDVLAALEQALAKG-PYLLGERFTA 59 (103)
T ss_pred hhhhhhHHHHHHHHHHHHccC-CcccCCccCH
Confidence 445667999999999999864 5677888873
No 155
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=87.78 E-value=0.94 Score=29.08 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
+...+.+.+.++.+|+.|+++ ++++|+++|+
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~-~~l~G~~~t~ 64 (126)
T cd03185 34 EKAKEEALEALKVLEEELGGK-PFFGGDTIGY 64 (126)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCCCCCcch
Confidence 345667889999999999763 5666778984
No 156
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=87.24 E-value=1.6 Score=28.20 Aligned_cols=27 Identities=22% Similarity=0.205 Sum_probs=23.4
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecCC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINIS 45 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~~ 45 (148)
.|+-|++++-.|+.+|++|+.+++.-.
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (114)
T TIGR00014 8 RCSKSRNTLALLEDKGIEPEVVKYLKN 34 (114)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccCC
Confidence 388899999999999999999887544
No 157
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=86.74 E-value=0.78 Score=29.67 Aligned_cols=29 Identities=7% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhh-CCCCccCCCCCC
Q 032062 120 EQALLEELKALDEHLKT-HVQTNLKHRYPF 148 (148)
Q Consensus 120 ~~~l~~~l~~le~~L~~-~~~~fl~~~~s~ 148 (148)
.+.+.+.++.||+.|++ +++.|++|++|.
T Consensus 32 ~~~~~~~l~~Le~~L~~~~~~~fl~G~~tl 61 (120)
T cd03203 32 SAEAAAALDYIENALSKFDDGPFFLGQFSL 61 (120)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCcCCCccH
Confidence 33567888999999974 123455448874
No 158
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=85.46 E-value=1.6 Score=28.69 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYP 147 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s 147 (148)
++..+...+.|+.|++.|+++ .+|+|+++|
T Consensus 56 ee~~~~~~~~l~aLs~~Lg~~-~~l~Gd~pT 85 (126)
T cd03211 56 DQVIEEVDQCCQALSQRLGTQ-PYFFGDQPT 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CCCCCCCCc
Confidence 566778899999999999874 577888887
No 159
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=85.10 E-value=1.1 Score=29.80 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhCC-CCccCCCCCC
Q 032062 122 ALLEELKALDEHLKTHV-QTNLKHRYPF 148 (148)
Q Consensus 122 ~l~~~l~~le~~L~~~~-~~fl~~~~s~ 148 (148)
.+.+.|+.||+.|.+++ ++++|+++|+
T Consensus 43 ~~~~~l~~lE~~L~~~~~~~l~G~~~T~ 70 (137)
T cd03208 43 AKNRYFPVFEKVLKSHGQDFLVGNKLSR 70 (137)
T ss_pred HHHHHHHHHHHHHHhCCCCeeeCCCCCH
Confidence 45788999999998543 4566888985
No 160
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=84.60 E-value=2.6 Score=27.07 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=22.8
Q ss_pred cCchHHHHHHHHHhcCCCceEEEecC
Q 032062 19 DCPFSQRALLTLEEKKVPYKRHLINI 44 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~i~~ 44 (148)
.|.=|++++-.|+.+|++|+.+++.-
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (112)
T cd03034 8 RCSKSRNALALLEEAGIEPEIVEYLK 33 (112)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccc
Confidence 48889999999999999999987753
No 161
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=84.23 E-value=1.3 Score=27.38 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCCccCCCCCC
Q 032062 119 TEQALLEELKALDEHLKTH-VQTNLKHRYPF 148 (148)
Q Consensus 119 ~~~~l~~~l~~le~~L~~~-~~~fl~~~~s~ 148 (148)
..+.+.+.++.+|+.|.+. +++++|+++|+
T Consensus 40 ~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~ 70 (104)
T cd03192 40 LKEAIPKYLKKLEKILKENGGGYLVGDKLTW 70 (104)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCeeeCCCccH
Confidence 4456888999999999762 24567788884
No 162
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=83.36 E-value=2.1 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.000 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
++..+...+.++.+|+.|+++ .+|+|+++|.
T Consensus 63 ~~~~~~a~~~l~~l~~~L~~~-~~~~Gd~~t~ 93 (137)
T cd03212 63 AEIYRDAKECLNLLSQRLGES-QFFFGDTPTS 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CcCCCCCCcH
Confidence 455667888999999999874 5677888873
No 163
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=82.95 E-value=2 Score=27.41 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCccCCCCCC
Q 032062 118 GTEQALLEELKALDEHLKTHVQTNLKHRYPF 148 (148)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~fl~~~~s~ 148 (148)
...+.+.+.|+.+|+.|+.+ ++++|+++|.
T Consensus 40 ~~~~~~~~~l~~le~~l~~~-~~l~G~~~si 69 (123)
T cd03181 40 AALEELDRVLGVLEERLLKR-TYLVGERLTL 69 (123)
T ss_pred HHHHHHHHHHHHHHHHHccC-ceeccCCccH
Confidence 35567888999999999764 5677888873
No 164
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=80.93 E-value=7.6 Score=25.28 Aligned_cols=52 Identities=19% Similarity=0.122 Sum_probs=29.5
Q ss_pred CcCchHHHHHHHHHh----cCCCceEEEecCCC---Cc-----hhhhhhC----CCCCCcEEE--eCCee
Q 032062 18 GDCPFSQRALLTLEE----KKVPYKRHLINISD---KP-----QWFMEIS----PEGKVPVVK--FDDKW 69 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~----~gi~~~~~~i~~~~---~~-----~~~~~~~----p~g~vP~L~--~~g~~ 69 (148)
.+||+|+.+.-.|.. .++++-.+.++... .. .+|.+.. ....+|+++ .+|..
T Consensus 33 ~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 33 KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 479999987776643 34555555555321 11 1344433 344599985 36643
No 165
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=80.34 E-value=3.3 Score=26.38 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCccCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTHVQTNLKHRYP 147 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s 147 (148)
+...+.+.+.+..+|..|.++++ |+.|+||
T Consensus 41 ~~~~~~~~~~~~~le~~l~~~~~-~l~G~fS 70 (114)
T cd03195 41 EAAQAAAEKLIAVAEALLPPGAA-NLFGEWC 70 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-cccCCcc
Confidence 45677888899999999974324 5544787
No 166
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=79.75 E-value=4.2 Score=25.99 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhC--CCCccCCCCCC
Q 032062 117 DGTEQALLEELKALDEHLKTH--VQTNLKHRYPF 148 (148)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~--~~~fl~~~~s~ 148 (148)
+...+.+.+.++.+|..|+.. +++++|+ ||+
T Consensus 40 ~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ 72 (114)
T cd03194 40 EAVQADIARIEAIWAECLARFQGGPFLFGD-FSI 72 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcH
Confidence 456667778888888887643 3456677 884
No 167
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=79.70 E-value=4.9 Score=25.69 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=30.2
Q ss_pred CcCchHHHHHHHHHhcCCC---ceEEEecCCCCchhhhhhCCCCCCcEEEe
Q 032062 18 GDCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKF 65 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~---~~~~~i~~~~~~~~~~~~~p~g~vP~L~~ 65 (148)
.|||+|..++-+++...-. .+...++.. ..+++...-....+|++..
T Consensus 32 ~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 32 EGCQYCEVTKQLLEELSELSDKLKLEIYDFD-EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred CCCCChHHHHHHHHHHHHhcCceEEEEEeCC-cCHHHHHHcCCCcCCEEEE
Confidence 3799999888777643321 234445544 3455666667789999854
No 168
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=77.65 E-value=2.6 Score=26.88 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=20.8
Q ss_pred cCcCchHHHHHHHHHhcCCCceEEEecC
Q 032062 17 LGDCPFSQRALLTLEEKKVPYKRHLINI 44 (148)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~i~~ 44 (148)
...|.-|++++-.|+.+|++|+.+.+.-
T Consensus 3 ~~~C~t~rka~~~L~~~gi~~~~~d~~k 30 (110)
T PF03960_consen 3 NPNCSTCRKALKWLEENGIEYEFIDYKK 30 (110)
T ss_dssp -TT-HHHHHHHHHHHHTT--EEEEETTT
T ss_pred CCCCHHHHHHHHHHHHcCCCeEeehhhh
Confidence 3458889999999999999999987754
No 169
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=70.99 E-value=26 Score=22.83 Aligned_cols=69 Identities=14% Similarity=0.072 Sum_probs=38.8
Q ss_pred eeeeeeecCCCCCCcCcCchHHHHHHHHHh----cCCCceEEEecCCCC------chhhhhhCCCC-CCcEEEe--CCee
Q 032062 3 VEICVKAAVGAPDILGDCPFSQRALLTLEE----KKVPYKRHLINISDK------PQWFMEISPEG-KVPVVKF--DDKW 69 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~----~gi~~~~~~i~~~~~------~~~~~~~~p~g-~vP~L~~--~g~~ 69 (148)
|-+...++.+. -+..|||.|+.+.-.++. ..-.+..+.|+.++. ..++...--.. .+|++.. +|..
T Consensus 24 vvV~F~A~~~~-~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 24 IFILFYGDKDP-DGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQR 102 (119)
T ss_pred EEEEEEccCCC-CCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCce
Confidence 44555566653 677899999977655532 222355566665432 23454433334 7999853 4444
Q ss_pred eec
Q 032062 70 VAD 72 (148)
Q Consensus 70 l~e 72 (148)
+.|
T Consensus 103 l~~ 105 (119)
T cd02952 103 LVE 105 (119)
T ss_pred ecc
Confidence 443
No 170
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=69.81 E-value=17 Score=22.41 Aligned_cols=46 Identities=9% Similarity=-0.126 Sum_probs=27.5
Q ss_pred CcCchHHHHHHHH--------HhcCCCceEEEecCCCC---chhhhhhCCCCCCcEEE
Q 032062 18 GDCPFSQRALLTL--------EEKKVPYKRHLINISDK---PQWFMEISPEGKVPVVK 64 (148)
Q Consensus 18 ~~sp~~~~v~~~l--------~~~gi~~~~~~i~~~~~---~~~~~~~~p~g~vP~L~ 64 (148)
.+|++|.+..-.+ .+.+ .+....++.... .+++.+......+|++.
T Consensus 21 ~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 21 DWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred chhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 3688888765333 2232 466666665432 24556666678899874
No 171
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.94 E-value=12 Score=28.19 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCCceEEEecCCCC-chhhhhhC----CCCCCcEEEeCCeeeechHHHHHH
Q 032062 23 SQRALLTLEEKKVPYKRHLINISDK-PQWFMEIS----PEGKVPVVKFDDKWVADSDVIVRI 79 (148)
Q Consensus 23 ~~~v~~~l~~~gi~~~~~~i~~~~~-~~~~~~~~----p~g~vP~L~~~g~~l~eS~aI~~y 79 (148)
|..||.+|+-.+|.|++.+|.++.. .+++..+- -.-.+|.+-.+|..|.....|.+-
T Consensus 150 C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 150 CNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 8999999999999999999999752 34444332 234789777899988888877765
No 172
>PHA02278 thioredoxin-like protein
Probab=64.67 E-value=33 Score=21.59 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=29.8
Q ss_pred cCchHHHHHHHHHhc----CCCceEEEecCCCC---chhhhhhCCCCCCcEEE--eCCeee
Q 032062 19 DCPFSQRALLTLEEK----KVPYKRHLINISDK---PQWFMEISPEGKVPVVK--FDDKWV 70 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~----gi~~~~~~i~~~~~---~~~~~~~~p~g~vP~L~--~~g~~l 70 (148)
||+.|+...=.++.. +.......++.+.. .+++.+..-...+|++. .+|..+
T Consensus 25 WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 25 NCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred CCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 688887666544332 22233444555432 24566666678999985 377554
No 173
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=62.64 E-value=32 Score=20.85 Aligned_cols=52 Identities=19% Similarity=0.106 Sum_probs=30.9
Q ss_pred CcCchHHHHHHHHHh----cCCCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCeee
Q 032062 18 GDCPFSQRALLTLEE----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWV 70 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~----~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~l 70 (148)
.+|+.|....-.++. .+-.+....+|... .+++........+|++. .+|..+
T Consensus 23 ~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 23 PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred CCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCCeeccEEEEEECCeEE
Confidence 369999888776644 11134555666543 34455555567899874 356444
No 174
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=60.95 E-value=39 Score=21.23 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=36.9
Q ss_pred CcCchHHHHHHHHHhcCC--CceEEEecCCCCch--hhhhh---CCCCCCcEEEeCCe-eeechHHHHHHHHhh
Q 032062 18 GDCPFSQRALLTLEEKKV--PYKRHLINISDKPQ--WFMEI---SPEGKVPVVKFDDK-WVADSDVIVRIIEEK 83 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi--~~~~~~i~~~~~~~--~~~~~---~p~g~vP~L~~~g~-~l~eS~aI~~yL~~~ 83 (148)
+.||+|.+..-.+...+. .++.+.+......+ ..... +....+-+ ..+|. ....+.|+.+-+...
T Consensus 5 g~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 5 GDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 369999888877776654 45555442111111 11112 22234444 55665 899999998876653
No 175
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=59.13 E-value=26 Score=22.37 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=24.3
Q ss_pred cCchHHHHHHHH-------HhcCCCceEEEecCCCC------------chhhhhhCCCCCCcEEE
Q 032062 19 DCPFSQRALLTL-------EEKKVPYKRHLINISDK------------PQWFMEISPEGKVPVVK 64 (148)
Q Consensus 19 ~sp~~~~v~~~l-------~~~gi~~~~~~i~~~~~------------~~~~~~~~p~g~vP~L~ 64 (148)
+||+|++..-.+ ...+-.+..+.++.... ..++........+|+++
T Consensus 25 wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 25 GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 699998875332 11111355555655432 13344444456788763
No 176
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=58.14 E-value=19 Score=21.94 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCccCCCCC
Q 032062 118 GTEQALLEELKALDEHLKTHVQTNLKHRYP 147 (148)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~fl~~~~s 147 (148)
...+.+.+.|..+|++|+++ .| ++||
T Consensus 37 ~~~~~~~~~l~~le~~L~~~--~~--d~~T 62 (98)
T cd03205 37 RQRGKIERALDALEAELAKL--PL--DPLD 62 (98)
T ss_pred HHHHHHHHHHHHHHHhhhhC--CC--CCCC
Confidence 45667889999999999754 34 7776
No 177
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=56.18 E-value=50 Score=20.95 Aligned_cols=54 Identities=17% Similarity=0.016 Sum_probs=34.2
Q ss_pred CcCchHHHHHHHHHhcC---CCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCeeeec
Q 032062 18 GDCPFSQRALLTLEEKK---VPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWVAD 72 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~g---i~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~l~e 72 (148)
.+|+.|+.+.-.++... -......||... .++..+......+|++. .+|..+..
T Consensus 32 ~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~-~~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 32 PEFFRCKIMDKHLEILAKKHLETKFIKVNAEK-APFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred CCCccHHHHHHHHHHHHHHcCCCEEEEEEccc-CHHHHHHCCCccCCEEEEEECCEEEEE
Confidence 36888887776664421 124566666544 34466667788999985 37766653
No 178
>PHA03158 hypothetical protein; Provisional
Probab=54.81 E-value=77 Score=22.74 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=42.3
Q ss_pred CeeeechHHHHHHHHhhCCCCCCCCChHHhhhhccchHHHHHhhccCCCChhHHHHHHHHHHHHHHHHh
Q 032062 67 DKWVADSDVIVRIIEEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLK 135 (148)
Q Consensus 67 g~~l~eS~aI~~yL~~~~~~~~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~ 135 (148)
-.+.++|..-.+.|++..|.=-+....+++.+.+-+..+..++..+. +.++++.+.++.+|+.+.
T Consensus 207 ~~V~y~sLpf~ERl~Rs~pPWCv~t~~EK~~~~kQllka~kkc~~~s----~~~~~leeei~eleks~a 271 (273)
T PHA03158 207 KHVRFDDLPFMERIKRSGPPWCIKTAKEKAAILKQLLKAAKKCCKNS----EHEKELEEEIEELEKSLA 271 (273)
T ss_pred EEEEeccCcHHHHHhccCCCcEeecHHHhHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHHHHhhc
Confidence 37789999999999987652112345566666655555554544333 456677888888887764
No 179
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.04 E-value=41 Score=24.65 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=14.9
Q ss_pred CceeeeeeecCCCCCCcCcCchHH----HHHHHHHhcC
Q 032062 1 MAVEICVKAAVGAPDILGDCPFSQ----RALLTLEEKK 34 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~----~v~~~l~~~g 34 (148)
|+++|.+.--. .||||. |..-++...+
T Consensus 4 ~~i~I~v~sD~-------vCPwC~ig~~rL~ka~~~~~ 34 (225)
T COG2761 4 MKIEIDVFSDV-------VCPWCYIGKRRLEKALAEYP 34 (225)
T ss_pred ceEEEEEEeCC-------cCchhhcCHHHHHHHHHhcC
Confidence 44555554443 499995 4444444444
No 180
>PRK09266 hypothetical protein; Provisional
Probab=51.89 E-value=22 Score=26.27 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=40.5
Q ss_pred HHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhCC
Q 032062 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (148)
Q Consensus 29 ~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~ 85 (148)
.+...|++.+...+++.+ ..+-|..-+-.|-+||-..++..+..+..|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 345668999998887754 223344444569999998888877655678888877764
No 181
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=51.79 E-value=44 Score=19.06 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=28.7
Q ss_pred cCchHHHHHHHHHh-----cCCCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCe
Q 032062 19 DCPFSQRALLTLEE-----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDK 68 (148)
Q Consensus 19 ~sp~~~~v~~~l~~-----~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~ 68 (148)
+|++|+...-.+.. .++.+ ..++... ..++.+......+|++. .+|.
T Consensus 21 ~C~~C~~~~~~~~~~~~~~~~~~~--~~i~~~~-~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 21 WCGPCKAIAPVLEELAEEYPKVKF--VKVDVDE-NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CChhHHHhhHHHHHHHHHCCCceE--EEEECCC-ChhHHHhcCcccccEEEEEECCE
Confidence 69999888777765 44443 3444432 34455555667899874 3554
No 182
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=50.69 E-value=19 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.6
Q ss_pred CcEE-EeCCeeeechHHHHHHHHhhCC
Q 032062 60 VPVV-KFDDKWVADSDVIVRIIEEKYP 85 (148)
Q Consensus 60 vP~L-~~~g~~l~eS~aI~~yL~~~~~ 85 (148)
+|.+ ..+|.+++.|..|+++...+|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 4655 4689999999999999876654
No 183
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=50.68 E-value=67 Score=20.79 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=31.8
Q ss_pred CcCchHHHHHHHHHhcCCC----ceEEEecCCCCchhhhhhCCCCCCcEEE--eCCeee
Q 032062 18 GDCPFSQRALLTLEEKKVP----YKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWV 70 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~----~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~l 70 (148)
.|||.|+...-.++..--. .....||.+. .+++.+......+|++. .+|..+
T Consensus 24 ~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~-~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 24 DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE-VPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred CCChhHHHHHHHHHHHHHHccCceEEEEEECCC-CHHHHHHcCCCCCCEEEEEECCEEE
Confidence 4788888776666432211 3445566654 34566666678899985 366554
No 184
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=49.57 E-value=72 Score=20.84 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=32.9
Q ss_pred CcCchHHHHHH-HH------HhcCCCceEEEecCCCCchh---hh----hhCCCCCCcEEEe---CCeeeech
Q 032062 18 GDCPFSQRALL-TL------EEKKVPYKRHLINISDKPQW---FM----EISPEGKVPVVKF---DDKWVADS 73 (148)
Q Consensus 18 ~~sp~~~~v~~-~l------~~~gi~~~~~~i~~~~~~~~---~~----~~~p~g~vP~L~~---~g~~l~eS 73 (148)
.+|++|++..- .+ ....-.|..+.+|....++. +. ..+..+-+|+++. +|..+..+
T Consensus 25 ~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 25 STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 47999987742 22 22233688888887653321 11 1234567998753 57777665
No 185
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=48.79 E-value=18 Score=25.86 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=29.5
Q ss_pred CcCchHHHHHHHHHhcC---CCceEEEecCCCCchhhhhhCCCCCCcEEEe
Q 032062 18 GDCPFSQRALLTLEEKK---VPYKRHLINISDKPQWFMEISPEGKVPVVKF 65 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~g---i~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~ 65 (148)
.+||+|..+..+++..- -......+|.. ..++.........+|+++.
T Consensus 143 ~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~-~~~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 143 PTCPYCPYAVLMAHKFALANDKILGEMIEAN-ENPDLAEKYGVMSVPKIVI 192 (215)
T ss_pred CCCCCcHHHHHHHHHHHHhcCceEEEEEeCC-CCHHHHHHhCCccCCEEEE
Confidence 46999998887776422 12333445543 3445666666778999865
No 186
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=47.79 E-value=72 Score=20.38 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=26.2
Q ss_pred CcCchHHHHHHHHHh------cCCCceEEEecCCCCchhhhhhCCCC-CCcEEE--e-CCeeee
Q 032062 18 GDCPFSQRALLTLEE------KKVPYKRHLINISDKPQWFMEISPEG-KVPVVK--F-DDKWVA 71 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~------~gi~~~~~~i~~~~~~~~~~~~~p~g-~vP~L~--~-~g~~l~ 71 (148)
.+|++|++..-.+.. .+..|-.+.++-... +.-...+..| .+|++. + +|..+.
T Consensus 29 ~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 29 TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCCCCch
Confidence 479999877555543 122344444443221 1112334443 599874 2 455443
No 187
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=43.55 E-value=70 Score=19.01 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=39.4
Q ss_pred cCchHHHHHHHHH-----hcCCCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCeee------echHHHHHHHHh
Q 032062 19 DCPFSQRALLTLE-----EKKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWV------ADSDVIVRIIEE 82 (148)
Q Consensus 19 ~sp~~~~v~~~l~-----~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~l------~eS~aI~~yL~~ 82 (148)
+|+.|....-.+. +.+ ++....+|... .+++.+......+|++. .+|... .....|..+|.+
T Consensus 28 ~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 28 WCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-NKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp TSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-SHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred CCCccccccceeccccccccc-ccccchhhhhc-cchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 6999988775553 233 56666777653 35566666789999984 466443 244566666653
No 188
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=39.59 E-value=44 Score=22.82 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=23.0
Q ss_pred CchHHHHHHHHHhcCCCceEEEecCCCCchhh
Q 032062 20 CPFSQRALLTLEEKKVPYKRHLINISDKPQWF 51 (148)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~ 51 (148)
-|.+++++-.|+..|++|+...+.....++++
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l 44 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVASAHRTPERL 44 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--TTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeccCCHHHH
Confidence 56799999999999999998777665544443
No 189
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=38.75 E-value=85 Score=18.60 Aligned_cols=52 Identities=13% Similarity=-0.103 Sum_probs=31.4
Q ss_pred CcCchHHHHHHHHHhc----CCCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCeee
Q 032062 18 GDCPFSQRALLTLEEK----KVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWV 70 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~----gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~l 70 (148)
.+|+.|++..-.+... +-.+....+|.... +++.+.-....+|++. .+|..+
T Consensus 24 ~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 24 PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-PEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-HHHHHhcCCccccEEEEEECCEEE
Confidence 3688898887766531 33566666665433 3344444567799874 366543
No 190
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=38.43 E-value=97 Score=19.37 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=29.6
Q ss_pred cCchHHHHHHHHHhcCC---CceEEEecCCCCchhhhhhCCCCCCcEEE--eCCeeeec
Q 032062 19 DCPFSQRALLTLEEKKV---PYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWVAD 72 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi---~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~l~e 72 (148)
+|+.|+.+.-.++...- ......+|.... .+.+......+|+++ .+|..+..
T Consensus 35 ~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 35 GFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred CCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCCCcCCEEEEEECCEEEEE
Confidence 68878776655543211 234455555433 455555567999885 36765543
No 191
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=38.40 E-value=51 Score=22.54 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=17.9
Q ss_pred cCchHHHHHH----HHHhc-CCCceEEEecCC
Q 032062 19 DCPFSQRALL----TLEEK-KVPYKRHLINIS 45 (148)
Q Consensus 19 ~sp~~~~v~~----~l~~~-gi~~~~~~i~~~ 45 (148)
.||||....- +++.. ++.++.+.+.+.
T Consensus 9 ~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 9 ICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp TBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 3999964443 33444 788888877764
No 192
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=37.92 E-value=81 Score=22.00 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=16.6
Q ss_pred cCchHHHHHHHHHh--cCCCceEEEec
Q 032062 19 DCPFSQRALLTLEE--KKVPYKRHLIN 43 (148)
Q Consensus 19 ~sp~~~~v~~~l~~--~gi~~~~~~i~ 43 (148)
.||||++..-.+.. .++.+..+.+.
T Consensus 88 ~Cp~C~~~~~~l~~~~~~v~v~~~~~p 114 (197)
T cd03020 88 DCPYCRKLEKELKPNADGVTVRIFPVP 114 (197)
T ss_pred CCccHHHHHHHHhhccCceEEEEEEcC
Confidence 69999999888874 34444444443
No 193
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=37.89 E-value=97 Score=19.02 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=28.7
Q ss_pred cCchHHHHHHHHHhcC---CCceEEEecCCCCc--hhhhhhCCCCCCcEEEe--CCeee
Q 032062 19 DCPFSQRALLTLEEKK---VPYKRHLINISDKP--QWFMEISPEGKVPVVKF--DDKWV 70 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~g---i~~~~~~i~~~~~~--~~~~~~~p~g~vP~L~~--~g~~l 70 (148)
||+.|+...-.++... -......|+.+..+ .++.+......+|+++. +|..+
T Consensus 26 wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 26 HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 6888876655453211 12344555544322 35666666778998743 66543
No 194
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=37.71 E-value=1e+02 Score=19.12 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=26.4
Q ss_pred CcCchHHHHHHHHH-----hcCCCceEEEecCCCCchhhh-hhCCCCCCcEEE
Q 032062 18 GDCPFSQRALLTLE-----EKKVPYKRHLINISDKPQWFM-EISPEGKVPVVK 64 (148)
Q Consensus 18 ~~sp~~~~v~~~l~-----~~gi~~~~~~i~~~~~~~~~~-~~~p~g~vP~L~ 64 (148)
.+||.|++..-.+. +++..+....++.......+. +......+|++.
T Consensus 31 ~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 31 PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTIL 83 (109)
T ss_pred CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEE
Confidence 36888876654443 234345555666543222333 335677899875
No 195
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=36.98 E-value=41 Score=21.81 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=26.6
Q ss_pred CcCchHHHHHHHHHh-----cCCCceEEEecCCCCc--hhhhhhCCCCCCcEEEeCCe
Q 032062 18 GDCPFSQRALLTLEE-----KKVPYKRHLINISDKP--QWFMEISPEGKVPVVKFDDK 68 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~-----~gi~~~~~~i~~~~~~--~~~~~~~p~g~vP~L~~~g~ 68 (148)
.+||.|.+-.-.|.. ..-.++.+-|...... ..|.+... -..|++.|.+.
T Consensus 34 ~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~-~~~p~~~D~~~ 90 (149)
T cd02970 34 FGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF-LPFPVYADPDR 90 (149)
T ss_pred CCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC-CCCeEEECCch
Confidence 379999875544432 1234555555554321 22444433 35788877553
No 196
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=36.90 E-value=1.1e+02 Score=19.17 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=28.2
Q ss_pred CcCchHHHHHHHH-----HhcCCCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCee
Q 032062 18 GDCPFSQRALLTL-----EEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKW 69 (148)
Q Consensus 18 ~~sp~~~~v~~~l-----~~~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~ 69 (148)
.+|+.|+...-.+ .+.|.......++... .+..........+|++. .+|..
T Consensus 34 ~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 34 DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCCccCCEEEEEECCEE
Confidence 4677776554333 2333334455555433 33455556678999874 46643
No 197
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=36.23 E-value=28 Score=24.20 Aligned_cols=14 Identities=7% Similarity=0.313 Sum_probs=11.8
Q ss_pred chHHHHHHHHhhCC
Q 032062 72 DSDVIVRIIEEKYP 85 (148)
Q Consensus 72 eS~aI~~yL~~~~~ 85 (148)
|-.+|++||++.++
T Consensus 55 er~avVkYLAd~~G 68 (167)
T PF09098_consen 55 ERRAVVKYLADTQG 68 (167)
T ss_dssp HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHccC
Confidence 66799999999997
No 198
>PRK09381 trxA thioredoxin; Provisional
Probab=35.89 E-value=1.1e+02 Score=18.82 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=29.4
Q ss_pred cCchHHHHHHHHHh----cCCCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCeee
Q 032062 19 DCPFSQRALLTLEE----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWV 70 (148)
Q Consensus 19 ~sp~~~~v~~~l~~----~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~l 70 (148)
+||.|....-.++. .+-.+....++.... +.+.+......+|+++ .+|..+
T Consensus 32 ~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 32 WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-hhHHHhCCCCcCCEEEEEeCCeEE
Confidence 68888877654432 111355566666543 3344445678899874 366544
No 199
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=35.62 E-value=1.1e+02 Score=18.83 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=25.7
Q ss_pred CcCchHHHHHHHHHh-----cCCCceEEEecCCCCchhhhhhCCCCCCcEEE
Q 032062 18 GDCPFSQRALLTLEE-----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK 64 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~-----~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~ 64 (148)
.||+.|++..-.++. .++ ....++..+..+++.+......+|++.
T Consensus 28 ~WC~~C~~~~p~l~~la~~~~~~--~~~~vd~~~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 28 SWCPFSASFRPHFNALSSMFPQI--RHLAIEESSIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred CCCHHHHhHhHHHHHHHHHhccC--ceEEEECCCCCHHHHHhcCCeecCEEE
Confidence 368888877655533 333 334455442334455555567899874
No 200
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=35.55 E-value=1.1e+02 Score=18.77 Aligned_cols=51 Identities=6% Similarity=-0.096 Sum_probs=27.9
Q ss_pred CcCchHHHHHHHHHh-----cCCCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCeee
Q 032062 18 GDCPFSQRALLTLEE-----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWV 70 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~-----~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~l 70 (148)
.|||.|....-.+.. .+-......++.. .++..+..-...+|++. .+|..+
T Consensus 27 ~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 27 EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 378888766545532 2112344444444 33455555678899874 366543
No 201
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=35.39 E-value=40 Score=23.85 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=18.1
Q ss_pred CCeeeechHHHHHHHHhhCC
Q 032062 66 DDKWVADSDVIVRIIEEKYP 85 (148)
Q Consensus 66 ~g~~l~eS~aI~~yL~~~~~ 85 (148)
.+..|++|..|.+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 46778999999999999998
No 202
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=35.35 E-value=99 Score=18.34 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=30.4
Q ss_pred CcCchHHHHHHHHHhc----CCCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCee
Q 032062 18 GDCPFSQRALLTLEEK----KVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKW 69 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~----gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~ 69 (148)
.+|+.|++..-.+... +-.+....+|... .+++.+.-....+|+++ .+|..
T Consensus 22 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 22 PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3688888776666432 1135555666543 34455555678899885 46643
No 203
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=34.78 E-value=2.1e+02 Score=22.02 Aligned_cols=76 Identities=12% Similarity=-0.007 Sum_probs=40.8
Q ss_pred eeechHHHHHHHHhhCCCCCCCCChHHhhh---hccchHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCccCCC
Q 032062 69 WVADSDVIVRIIEEKYPEPSLTNPPEFASL---GSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHVQTNLKHR 145 (148)
Q Consensus 69 ~l~eS~aI~~yL~~~~~~~~L~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~fl~~~ 145 (148)
...||.+--+|+.....=...+|.-|+... ....+-.+.+.+..+..-.+.++.+-++.+..-..|+++ .+|+||+
T Consensus 236 n~~EsletFewf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgkn-r~flGG~ 314 (370)
T KOG3029|consen 236 NMGESLETFEWFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKN-RPFLGGK 314 (370)
T ss_pred ChhhHHHHHHHHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCC-CCccCCC
Confidence 456777777777754321234565554311 111122222333333222336677888887777777754 5788874
No 204
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=34.50 E-value=17 Score=23.93 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=22.8
Q ss_pred CcCchHHHHHHHH----Hhc-CCCceEEEecCCC-CchhhhhhCCCCCCcEEE
Q 032062 18 GDCPFSQRALLTL----EEK-KVPYKRHLINISD-KPQWFMEISPEGKVPVVK 64 (148)
Q Consensus 18 ~~sp~~~~v~~~l----~~~-gi~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~ 64 (148)
.|||-|.+.-=++ ++. +|+++.+..+-.. ..+.|+. +....||+++
T Consensus 51 ~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 51 TWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEE
T ss_pred CCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEE
Confidence 4899997654443 344 5666655443221 1234555 6778999985
No 205
>PTZ00051 thioredoxin; Provisional
Probab=34.24 E-value=1e+02 Score=18.28 Aligned_cols=51 Identities=14% Similarity=0.045 Sum_probs=29.4
Q ss_pred CcCchHHHHHHHHHhc---CCCceEEEecCCCCchhhhhhCCCCCCcEEEe--CCee
Q 032062 18 GDCPFSQRALLTLEEK---KVPYKRHLINISDKPQWFMEISPEGKVPVVKF--DDKW 69 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~---gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~~--~g~~ 69 (148)
.+|+.|+...-.+... ...+....++... ...+.+......+|+++. +|..
T Consensus 28 ~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 28 EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCCceeeEEEEEeCCeE
Confidence 3688888776655432 2234455555542 344556666788998742 5543
No 206
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=33.82 E-value=35 Score=27.09 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=33.3
Q ss_pred ceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEec
Q 032062 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLIN 43 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~ 43 (148)
.|.+|..+.+++++.-+..-|=.-|.=+|.++||+|+++.=.
T Consensus 69 KlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~ 110 (382)
T PF11711_consen 69 KLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGR 110 (382)
T ss_pred eEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccc
Confidence 367888888877666666667788899999999999998643
No 207
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=33.50 E-value=78 Score=23.38 Aligned_cols=13 Identities=15% Similarity=0.618 Sum_probs=10.7
Q ss_pred cCchHHHHHHHHH
Q 032062 19 DCPFSQRALLTLE 31 (148)
Q Consensus 19 ~sp~~~~v~~~l~ 31 (148)
.||||++..-.+.
T Consensus 128 ~CpyC~kl~~~l~ 140 (251)
T PRK11657 128 NCPYCKQFWQQAR 140 (251)
T ss_pred CChhHHHHHHHHH
Confidence 7999999877664
No 208
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.92 E-value=31 Score=22.55 Aligned_cols=61 Identities=15% Similarity=0.006 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCceEEEecCCCC-chhhhhhCC-CCCCcEEEe---CCeeeechHHHHHHHHhhC
Q 032062 24 QRALLTLEEKKVPYKRHLINISDK-PQWFMEISP-EGKVPVVKF---DDKWVADSDVIVRIIEEKY 84 (148)
Q Consensus 24 ~~v~~~l~~~gi~~~~~~i~~~~~-~~~~~~~~p-~g~vP~L~~---~g~~l~eS~aI~~yL~~~~ 84 (148)
+-++=++...|++.+-...+.... ..+-....| .|.+|+++| --...-|...|+.|+.+..
T Consensus 26 ~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 26 ALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344555667788777655543221 111112334 388898876 3455678888999998754
No 209
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.69 E-value=59 Score=19.48 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.8
Q ss_pred CchHHHHHHHHHhcCCCceEEEe
Q 032062 20 CPFSQRALLTLEEKKVPYKRHLI 42 (148)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~i 42 (148)
-.|++|+.-+|+..|++|+..+-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecC
Confidence 35799999999999999998754
No 210
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=32.55 E-value=93 Score=21.44 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=24.6
Q ss_pred CchHHHHHHHHHhcCCCceEEEecCCCCch
Q 032062 20 CPFSQRALLTLEEKKVPYKRHLINISDKPQ 49 (148)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~i~~~~~~~ 49 (148)
-|.++++...|+..||+|+.........++
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~ 40 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAHRTPE 40 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECcccCHH
Confidence 467899999999999999998887665443
No 211
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=30.62 E-value=52 Score=23.92 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=36.3
Q ss_pred HHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeee--echHHHHHHHHhh
Q 032062 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWV--ADSDVIVRIIEEK 83 (148)
Q Consensus 29 ~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l--~eS~aI~~yL~~~ 83 (148)
.++..|++++...+.+.+ ..+-|..-+..|-+|+-..++..+ .....|.+.|-+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 456789999998887653 223344444568999998887766 3456677766543
No 212
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.14 E-value=75 Score=19.76 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=40.3
Q ss_pred chHHHHHHHHHhcCCCceEEEecCCCCchhhhh-hCCCCCCcEEEeCCeeeechHHHHHHHHhhCCCCC
Q 032062 21 PFSQRALLTLEEKKVPYKRHLINISDKPQWFME-ISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS 88 (148)
Q Consensus 21 p~~~~v~~~l~~~gi~~~~~~i~~~~~~~~~~~-~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~ 88 (148)
|-+....-.|...|.++-.+.=+....+.++.+ ....| +| +..+.+++-+.++.+||.+.++...
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~G-i~--~~~~~i~ts~~~~~~~l~~~~~~~~ 82 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLG-IP--VDEDEIITSGMAAAEYLKEHKGGKK 82 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTT-TT----GGGEEEHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcC-cC--CCcCEEEChHHHHHHHHHhcCCCCE
Confidence 445666666777888877765333333355543 33334 55 3457889999999999999765444
No 213
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=30.14 E-value=1.9e+02 Score=20.01 Aligned_cols=52 Identities=12% Similarity=-0.060 Sum_probs=30.5
Q ss_pred cCchHHHHHHHHHhc---CCCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCeeeec
Q 032062 19 DCPFSQRALLTLEEK---KVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWVAD 72 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~---gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~l~e 72 (148)
+||.|..+.-.|... --....+.|+.... +.....+...+|++. -+|..+..
T Consensus 94 wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 94 GIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred CCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 688887655444221 11345566665432 455666778999985 37765543
No 214
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=30.06 E-value=89 Score=22.06 Aligned_cols=25 Identities=12% Similarity=-0.012 Sum_probs=16.2
Q ss_pred CchHH----HHHHHHHhcCCCceEEEecC
Q 032062 20 CPFSQ----RALLTLEEKKVPYKRHLINI 44 (148)
Q Consensus 20 sp~~~----~v~~~l~~~gi~~~~~~i~~ 44 (148)
||||. +.+-+++..+++.+.+.+.+
T Consensus 11 cPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 11 SPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 99985 34444555677777666654
No 215
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.36 E-value=14 Score=22.38 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=9.0
Q ss_pred CCCcCcCchHHHHHH
Q 032062 14 PDILGDCPFSQRALL 28 (148)
Q Consensus 14 ~~~~~~sp~~~~v~~ 28 (148)
++.+.+||.|+-|++
T Consensus 18 ~vEiD~CPrCrGVWL 32 (88)
T COG3809 18 GVEIDYCPRCRGVWL 32 (88)
T ss_pred CceeeeCCccccEee
Confidence 566666776665543
No 216
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=27.93 E-value=38 Score=25.29 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=37.2
Q ss_pred HHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeee----echHHHHHHHHhhC
Q 032062 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWV----ADSDVIVRIIEEKY 84 (148)
Q Consensus 29 ~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l----~eS~aI~~yL~~~~ 84 (148)
+++..|++.+...+.+.+ ..+-|..-+..|-+||-..++..+ .....|.+.|.+.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~~ 273 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDLL 273 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHHHH
Confidence 456789999998887753 223344444568999998877665 44556666665543
No 217
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=27.85 E-value=2.1e+02 Score=23.43 Aligned_cols=73 Identities=16% Similarity=0.332 Sum_probs=53.0
Q ss_pred CcCchHHHHHHHHHhc--CC-CceEEEecCC--CCchhhhhhC---C--CCCCcEEE----e-C--CeeeechHHHHHHH
Q 032062 18 GDCPFSQRALLTLEEK--KV-PYKRHLINIS--DKPQWFMEIS---P--EGKVPVVK----F-D--DKWVADSDVIVRII 80 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~--gi-~~~~~~i~~~--~~~~~~~~~~---p--~g~vP~L~----~-~--g~~l~eS~aI~~yL 80 (148)
..|||=.|+.++..+. ++ +|+.+.|... .|.+|+.+.+ . .++-|++. | | |.-|.....-++|.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 3599999999999885 45 4888776543 3566666543 2 37899983 3 3 46789999999999
Q ss_pred HhhCCCCCCC
Q 032062 81 EEKYPEPSLT 90 (148)
Q Consensus 81 ~~~~~~~~L~ 90 (148)
..-|+-.+.+
T Consensus 82 ~~yyg~~s~m 91 (452)
T cd05295 82 ESYYGITSSM 91 (452)
T ss_pred HHHhCccccc
Confidence 9999865544
No 218
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=27.75 E-value=92 Score=15.66 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=20.3
Q ss_pred CCCCCcEEEeCCeeeechHHHHHHHH
Q 032062 56 PEGKVPVVKFDDKWVADSDVIVRIIE 81 (148)
Q Consensus 56 p~g~vP~L~~~g~~l~eS~aI~~yL~ 81 (148)
-.|.+|....++..+.....|.+|+.
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 35788887667888888888888875
No 219
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=27.23 E-value=47 Score=21.38 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=23.1
Q ss_pred cCchHHHHHHHH-----HhcCCCceEEEecCCCC--chhhhhhCCCCCCcEEEeCC
Q 032062 19 DCPFSQRALLTL-----EEKKVPYKRHLINISDK--PQWFMEISPEGKVPVVKFDD 67 (148)
Q Consensus 19 ~sp~~~~v~~~l-----~~~gi~~~~~~i~~~~~--~~~~~~~~p~g~vP~L~~~g 67 (148)
+||.|.+..-.+ .+.+-.++.+.|..... -.+|.+.+.. ..|++.|.+
T Consensus 35 ~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~-~~~~l~D~~ 89 (140)
T cd03017 35 DTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGL-PFPLLSDPD 89 (140)
T ss_pred CCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC-CceEEECCc
Confidence 588886533322 12222345555554332 2344554443 477776644
No 220
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=26.71 E-value=1.2e+02 Score=19.53 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=33.7
Q ss_pred cCchHHHHHHHHHhcCCC----ceEEEecCCCCchhhhhhCCCCCCcEEEe--CCeeeec
Q 032062 19 DCPFSQRALLTLEEKKVP----YKRHLINISDKPQWFMEISPEGKVPVVKF--DDKWVAD 72 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~----~~~~~i~~~~~~~~~~~~~p~g~vP~L~~--~g~~l~e 72 (148)
.||-|+.+.-.|...--. .....++..+. ++.........+|+++. +|..+..
T Consensus 40 ~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 40 RFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-QALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred cCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-HHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 388898888777553323 33345555443 46677777889999853 7765543
No 221
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=26.52 E-value=1.2e+02 Score=19.82 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHHHHHHHHHhhCCCCccCCCCC
Q 032062 116 NDGTEQALLEELKALDEHLKTHVQTNLKHRYP 147 (148)
Q Consensus 116 ~~~~~~~l~~~l~~le~~L~~~~~~fl~~~~s 147 (148)
.+..++...+.+...+..|.. ++.++.|.+|
T Consensus 41 s~~a~~~a~kL~~~a~~ll~~-g~~~LFGews 71 (117)
T PF14834_consen 41 SEAAQAAAQKLIAVAERLLAD-GGPNLFGEWS 71 (117)
T ss_dssp -HHHHHHHHHHHHHHHHHTTT---SSTTSS--
T ss_pred CHHHHHHHHHHHHHHHHHhcc-CCCCccccch
Confidence 356777788888888887765 5667777776
No 222
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=26.40 E-value=1.5e+02 Score=17.77 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=25.7
Q ss_pred cCchHHHHHHHHHh-----cCCCceEEEecCCCCchhhhhhCCCCCCcEEE
Q 032062 19 DCPFSQRALLTLEE-----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK 64 (148)
Q Consensus 19 ~sp~~~~v~~~l~~-----~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~ 64 (148)
+|+.|+...-.+.. .| .+....+|.... +.+.+......+|++.
T Consensus 29 wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 29 RCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-RMLCRSQGVNSYPSLY 77 (101)
T ss_pred CChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-HHHHHHcCCCccCEEE
Confidence 68888766555532 23 244556665433 4455555668899884
No 223
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=26.11 E-value=90 Score=22.98 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=36.6
Q ss_pred HHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhhC
Q 032062 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (148)
Q Consensus 29 ~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 84 (148)
.++..|++++...+.+.+ ..+-|..-+-.|-+||-..|+..+. +..+.+.|.+.+
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~~-~g~~~~~l~~~~ 265 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYS-SGTLTRYLQPLC 265 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEcc-chHHHHHHHHHH
Confidence 345679999998887653 2233444445689999988887663 356777766554
No 224
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=25.90 E-value=2e+02 Score=18.96 Aligned_cols=67 Identities=7% Similarity=0.041 Sum_probs=34.7
Q ss_pred cCchHHHHHHHHHh----cCCCceEEEecCCCC-chhhhhhCCCCCCcEEE-e--CCeeee------chHHHHHHHHhhC
Q 032062 19 DCPFSQRALLTLEE----KKVPYKRHLINISDK-PQWFMEISPEGKVPVVK-F--DDKWVA------DSDVIVRIIEEKY 84 (148)
Q Consensus 19 ~sp~~~~v~~~l~~----~gi~~~~~~i~~~~~-~~~~~~~~p~g~vP~L~-~--~g~~l~------eS~aI~~yL~~~~ 84 (148)
||+.|.+..-.+.. .+-.+..+.|+.... ...+........+|+++ . +|..+. ....|...|.+..
T Consensus 31 WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 31 WCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred cCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 68888776655532 122344555555432 23445555567899873 3 464442 2234555555544
Q ss_pred C
Q 032062 85 P 85 (148)
Q Consensus 85 ~ 85 (148)
.
T Consensus 111 ~ 111 (142)
T cd02950 111 A 111 (142)
T ss_pred c
Confidence 3
No 225
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=25.71 E-value=1.6e+02 Score=21.45 Aligned_cols=15 Identities=7% Similarity=0.341 Sum_probs=11.8
Q ss_pred CcCchHHHHHHHHHh
Q 032062 18 GDCPFSQRALLTLEE 32 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~ 32 (148)
+.||||++..--+..
T Consensus 117 p~CpyCkkl~~~l~~ 131 (232)
T PRK10877 117 ITCGYCHKLHEQMKD 131 (232)
T ss_pred CCChHHHHHHHHHHH
Confidence 479999998776654
No 226
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=25.32 E-value=1e+02 Score=18.32 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=22.8
Q ss_pred eeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEE
Q 032062 5 ICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRH 40 (148)
Q Consensus 5 ~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~ 40 (148)
-|+....+.-..++-.|....+|=..+..|+|++.+
T Consensus 39 s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~p~d~I 74 (77)
T PF14026_consen 39 SYVSEDDGKIFCLYEAPDEEAVREHARRAGLPADRI 74 (77)
T ss_pred EEEecCCCeEEEEEECCCHHHHHHHHHHcCCCcceE
Confidence 344444444455566666777777777778777654
No 227
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=25.06 E-value=62 Score=20.75 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=24.0
Q ss_pred cCchHHHHHHHHHh-----cCCCceEEEecCCCC--chhhhhhCCCCCCcEEEeCC
Q 032062 19 DCPFSQRALLTLEE-----KKVPYKRHLINISDK--PQWFMEISPEGKVPVVKFDD 67 (148)
Q Consensus 19 ~sp~~~~v~~~l~~-----~gi~~~~~~i~~~~~--~~~~~~~~p~g~vP~L~~~g 67 (148)
+||.|.+..-.|.. ..-.++.+.|..... ...|.+..+....|++.|.+
T Consensus 34 ~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~ 89 (140)
T cd02971 34 FTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPD 89 (140)
T ss_pred CCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCC
Confidence 58877654333321 112345555554332 23444444345678776544
No 228
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=24.89 E-value=96 Score=20.13 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=25.1
Q ss_pred cCchHHHHHHHHHh-----cCCCceEEEecCCC--CchhhhhhCCCCCCcEEEeCC
Q 032062 19 DCPFSQRALLTLEE-----KKVPYKRHLINISD--KPQWFMEISPEGKVPVVKFDD 67 (148)
Q Consensus 19 ~sp~~~~v~~~l~~-----~gi~~~~~~i~~~~--~~~~~~~~~p~g~vP~L~~~g 67 (148)
+||.|++-.-.+.. +.-.++.+-+.... ...++.+. -...+|++.|.+
T Consensus 40 ~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~-~~~~~~~~~D~~ 94 (146)
T PF08534_consen 40 WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK-YGINFPVLSDPD 94 (146)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH-TTTTSEEEEETT
T ss_pred CCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh-hCCCceEEechH
Confidence 69999866644432 23344454444332 23344444 234677777643
No 229
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.28 E-value=1.3e+02 Score=19.17 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=29.0
Q ss_pred CceeeeeeecCCCCCCcCcCchHHHHHHHHHhcCCCceEEEecCCC
Q 032062 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~i~~~~ 46 (148)
|-|..|++-+++...+.. --+.+.+.|+...|+++.+.|....
T Consensus 2 ~~irvyvasssg~~eik~---kqqevv~~Ld~~ki~fk~~di~~~e 44 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKK---KQQEVVRFLDANKIGFKEIDITAYE 44 (108)
T ss_pred CceEEEEecCCCchHHHh---hhhhhhhhhhcccCCcceeeccchh
Confidence 456777776665222221 1467888899999999999887653
No 230
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=24.03 E-value=2.4e+02 Score=19.12 Aligned_cols=53 Identities=19% Similarity=0.020 Sum_probs=29.0
Q ss_pred CcCchHHHHHHHHHh-----cCCCceEEEecCCCCchhhhhhCCC------CCCcEEE--eCCeeee
Q 032062 18 GDCPFSQRALLTLEE-----KKVPYKRHLINISDKPQWFMEISPE------GKVPVVK--FDDKWVA 71 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~-----~gi~~~~~~i~~~~~~~~~~~~~p~------g~vP~L~--~~g~~l~ 71 (148)
.+||.|+...-.++. .+-.+....||..+. ++..+.... +++|+++ .+|..+.
T Consensus 57 ~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 57 TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 368888766655532 223356666776543 333333223 3499885 4676554
No 231
>PF08159 NUC153: NUC153 domain; InterPro: IPR012580 This small domain is found in a novel nucleolar family [].; GO: 0005634 nucleus
Probab=23.45 E-value=55 Score=15.86 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=11.4
Q ss_pred ecCCCCchhhhhhCCCC
Q 032062 42 INISDKPQWFMEISPEG 58 (148)
Q Consensus 42 i~~~~~~~~~~~~~p~g 58 (148)
..+...+++|+..+|..
T Consensus 13 F~ID~t~~~yk~~~~~~ 29 (30)
T PF08159_consen 13 FAIDPTSPEYKKTNPME 29 (30)
T ss_pred cccCCCCHHHHhhCccc
Confidence 33444678899888864
No 232
>PF13728 TraF: F plasmid transfer operon protein
Probab=22.73 E-value=3e+02 Score=19.80 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=26.0
Q ss_pred CchHHHHHHHH----HhcCCCceEEEecCCC--------CchhhhhhCCCCCCcEEE
Q 032062 20 CPFSQRALLTL----EEKKVPYKRHLINISD--------KPQWFMEISPEGKVPVVK 64 (148)
Q Consensus 20 sp~~~~v~~~l----~~~gi~~~~~~i~~~~--------~~~~~~~~~p~g~vP~L~ 64 (148)
||+|+.-.-+| ...|++...+.+|-.. ......+.-....+|+|.
T Consensus 132 C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 132 CPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred CchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 99997654444 4567777777666321 112233333346899874
No 233
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=22.49 E-value=76 Score=24.64 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=38.0
Q ss_pred CcCchHHHHHHHHHhcCCCc-------eEEEecCC-CCchhhhhhCCCCCCcEEEe--CCeeee-------chHHHHHHH
Q 032062 18 GDCPFSQRALLTLEEKKVPY-------KRHLINIS-DKPQWFMEISPEGKVPVVKF--DDKWVA-------DSDVIVRII 80 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~-------~~~~i~~~-~~~~~~~~~~p~g~vP~L~~--~g~~l~-------eS~aI~~yL 80 (148)
.||||+++..-.++++.-.| +.++-..+ ++.......--..+.|+|.. +|..+. .--|..+|+
T Consensus 23 dWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi 102 (375)
T KOG0912|consen 23 DWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFI 102 (375)
T ss_pred hhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHH
Confidence 49999999988887754322 22222222 12333344444578899843 675554 124777777
Q ss_pred Hhh
Q 032062 81 EEK 83 (148)
Q Consensus 81 ~~~ 83 (148)
..+
T Consensus 103 ~kq 105 (375)
T KOG0912|consen 103 EKQ 105 (375)
T ss_pred HHH
Confidence 654
No 234
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=22.48 E-value=1.3e+02 Score=19.21 Aligned_cols=46 Identities=22% Similarity=-0.094 Sum_probs=25.4
Q ss_pred CcCchHHHHHHHHHhcCC----CceEEEecCCCCchhhh-hhCCCCCCcEEE
Q 032062 18 GDCPFSQRALLTLEEKKV----PYKRHLINISDKPQWFM-EISPEGKVPVVK 64 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi----~~~~~~i~~~~~~~~~~-~~~p~g~vP~L~ 64 (148)
.||+.|+...-.++...- ......||... .++.. +..-...+|++.
T Consensus 39 ~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~-~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 39 PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW-PQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-ChHHHHHhcCCcccCEEE
Confidence 378888777666654321 23445555432 33343 344457899885
No 235
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.46 E-value=1.9e+02 Score=18.32 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=32.4
Q ss_pred CcCchHHHHHHHHHhcCCC---ceEEEecCCCCchhhhhhCCCCCCcEEEe--CCeeee
Q 032062 18 GDCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKF--DDKWVA 71 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~---~~~~~i~~~~~~~~~~~~~p~g~vP~L~~--~g~~l~ 71 (148)
.||+-|..+.=.+...-.. .....+|.++ .+++........+|+++. +|..+.
T Consensus 31 ~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~~~~~~~~~V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 31 TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-LEEVAKEFNVKAMPTFVFYKGGEEVD 88 (106)
T ss_pred CCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-CHhHHHhcCceEeeEEEEEECCEEEE
Confidence 4788887776665543333 3344556555 555666666788999853 665443
No 236
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=22.35 E-value=2e+02 Score=17.57 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=26.5
Q ss_pred CcCchHHHHHHHHHhc-----C-C----CceEEEecCCCCchhhhhhCCCCCCcEEE
Q 032062 18 GDCPFSQRALLTLEEK-----K-V----PYKRHLINISDKPQWFMEISPEGKVPVVK 64 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~~-----g-i----~~~~~~i~~~~~~~~~~~~~p~g~vP~L~ 64 (148)
.+|+.|++..-.++.. + . .+....+|... .+++.+......+|++.
T Consensus 28 ~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-~~~l~~~~~v~~~Ptl~ 83 (108)
T cd02996 28 DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-ESDIADRYRINKYPTLK 83 (108)
T ss_pred CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-CHHHHHhCCCCcCCEEE
Confidence 3688888776555321 1 1 23444555443 34555666678999885
No 237
>PF12728 HTH_17: Helix-turn-helix domain
Probab=21.59 E-value=1.4e+02 Score=15.58 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=22.2
Q ss_pred CCCCCcEEEeCCeeeechHHHHHHHHhh
Q 032062 56 PEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (148)
Q Consensus 56 p~g~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (148)
-.|.+|....++.....-..|.+|+.++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 23 RQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 3578888887788888888888988763
No 238
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=21.53 E-value=71 Score=19.61 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=15.1
Q ss_pred cCchHHHHHHHHHh-----c--CCCceEEEecCC
Q 032062 19 DCPFSQRALLTLEE-----K--KVPYKRHLINIS 45 (148)
Q Consensus 19 ~sp~~~~v~~~l~~-----~--gi~~~~~~i~~~ 45 (148)
+||+|++..-.+.. . .-.+..+.++..
T Consensus 16 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 16 WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 59999988665542 1 113555666554
No 239
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=21.48 E-value=1.9e+02 Score=17.09 Aligned_cols=46 Identities=9% Similarity=0.038 Sum_probs=26.5
Q ss_pred cCchHHHHHHHHHh-----cC-CCceEEEecCCCCchhhhhhCCCCCCcEEE
Q 032062 19 DCPFSQRALLTLEE-----KK-VPYKRHLINISDKPQWFMEISPEGKVPVVK 64 (148)
Q Consensus 19 ~sp~~~~v~~~l~~-----~g-i~~~~~~i~~~~~~~~~~~~~p~g~vP~L~ 64 (148)
+||.|++..-.+.. .+ -.+....++.....+.+.+.-....+|++.
T Consensus 29 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 29 WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 68888655444422 21 235666666554234555555678899874
No 240
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=21.29 E-value=1.7e+02 Score=17.60 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=25.3
Q ss_pred cCchHHHHHHHHHhc----CCCceEEEecCCCCchhhhhhCCCCCCcEEE
Q 032062 19 DCPFSQRALLTLEEK----KVPYKRHLINISDKPQWFMEISPEGKVPVVK 64 (148)
Q Consensus 19 ~sp~~~~v~~~l~~~----gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~ 64 (148)
+|+.|++..-.+... +-.+....+|.... +++.+......+|++.
T Consensus 30 wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 30 WCGPCQALLPELRKAARALKGKVKVGSVDCQKY-ESLCQQANIRAYPTIR 78 (104)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHcCCCcccEEE
Confidence 688887655444322 11244455555433 4455555678899874
No 241
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=21.24 E-value=84 Score=23.76 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=34.8
Q ss_pred HHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeeee--chHHHHHHHHh
Q 032062 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVA--DSDVIVRIIEE 82 (148)
Q Consensus 29 ~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l~--eS~aI~~yL~~ 82 (148)
+++..|++.+...+.+.+ ..+-|..-+..|-+|+-..|+..+. ....+.+-|-+
T Consensus 228 ~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~id~~~~~~g~~g~~~~~L~~ 286 (306)
T PRK06606 228 LAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREVDGRQIGNGKRGPITEKLQS 286 (306)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECcEECCCCCCCHHHHHHHH
Confidence 556789999998887653 2233444455689999988887664 33444444433
No 242
>PRK13356 aminotransferase; Provisional
Probab=21.24 E-value=86 Score=23.43 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=35.3
Q ss_pred HHHhcCCCceEEEecCCC---CchhhhhhCCCCCCcEEEeCCeeeechHHHHHHHHhh
Q 032062 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (148)
Q Consensus 29 ~l~~~gi~~~~~~i~~~~---~~~~~~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (148)
.+...|++.+...+.+.+ ..+-|..-+..+-+||-..+|..+. ...|.+.|.+.
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~id~~~~~-~g~~~~~l~~~ 277 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFDDRSLQ-PGPVTRRAREL 277 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEECCEEec-CChHHHHHHHH
Confidence 456789999998887653 2333454455688999988887663 23555555443
No 243
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.98 E-value=1.3e+02 Score=20.77 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=14.4
Q ss_pred cCchHHHHHH----HHHhc----CCCceEEEecC
Q 032062 19 DCPFSQRALL----TLEEK----KVPYKRHLINI 44 (148)
Q Consensus 19 ~sp~~~~v~~----~l~~~----gi~~~~~~i~~ 44 (148)
.||||.-..- +.+.. +++++.+.+.+
T Consensus 8 ~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 8 VCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred cCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 4999974443 33344 45555555544
No 244
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=20.96 E-value=2e+02 Score=17.07 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=25.6
Q ss_pred CcCchHHHHHHHH-----HhcC-CCceEEEecCCC-CchhhhhhCCCCCCcEEE
Q 032062 18 GDCPFSQRALLTL-----EEKK-VPYKRHLINISD-KPQWFMEISPEGKVPVVK 64 (148)
Q Consensus 18 ~~sp~~~~v~~~l-----~~~g-i~~~~~~i~~~~-~~~~~~~~~p~g~vP~L~ 64 (148)
.+||.|+...-.+ ...+ -.+....++... ..+.+.+......+|+++
T Consensus 27 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 27 PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 3689888764333 1221 224444555543 244455555667899874
No 245
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=20.62 E-value=2.1e+02 Score=17.11 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=26.1
Q ss_pred cCchHHHHHHHHHh-----cCCCceEEEecCCCCchhhhhhCCCCCCcEEE
Q 032062 19 DCPFSQRALLTLEE-----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK 64 (148)
Q Consensus 19 ~sp~~~~v~~~l~~-----~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~ 64 (148)
+||.|....-.+.. .+..+....+|... .+.+.+......+|++.
T Consensus 27 wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 27 WCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFVTALPTIY 76 (101)
T ss_pred CCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCCcccCEEE
Confidence 68888766544432 23344555555543 34455555678899875
No 246
>PRK10996 thioredoxin 2; Provisional
Probab=20.42 E-value=2.6e+02 Score=18.27 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=31.0
Q ss_pred CcCchHHHHHHHHHh----cCCCceEEEecCCCCchhhhhhCCCCCCcEEE--eCCeee
Q 032062 18 GDCPFSQRALLTLEE----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWV 70 (148)
Q Consensus 18 ~~sp~~~~v~~~l~~----~gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~--~~g~~l 70 (148)
.+|+.|++..-.+.. .+-.+....+|.... +++.+......+|+++ .+|..+
T Consensus 62 ~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 62 PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-RELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-HHHHHhcCCCccCEEEEEECCEEE
Confidence 378888876544433 222355566666433 4556666678899874 366544
No 247
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=20.20 E-value=43 Score=24.36 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=30.2
Q ss_pred cCchHHHHHHHH----HhcCCCceEEEecCCCCchhhhhhC-C-CCCCcEEEeC-CeeeechH
Q 032062 19 DCPFSQRALLTL----EEKKVPYKRHLINISDKPQWFMEIS-P-EGKVPVVKFD-DKWVADSD 74 (148)
Q Consensus 19 ~sp~~~~v~~~l----~~~gi~~~~~~i~~~~~~~~~~~~~-p-~g~vP~L~~~-g~~l~eS~ 74 (148)
.||-+---|+.+ +++|||.+.-.---....+|+++.+ | ...+|+|+.| +..+--|.
T Consensus 162 asPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDad~n~df~~ 224 (244)
T KOG4235|consen 162 ASPETCYKRIYLRAREEEKGIPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDADHNMDFSL 224 (244)
T ss_pred cChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEecccchhHHH
Confidence 455543333333 5789987653211112456777654 3 3899999865 33333333
No 248
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=20.12 E-value=2.2e+02 Score=17.24 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=25.3
Q ss_pred CcCchHHHHHHHHH-----hc--CCCceEEEecCCCCchhhhhhCCCCCCcEEE
Q 032062 18 GDCPFSQRALLTLE-----EK--KVPYKRHLINISDKPQWFMEISPEGKVPVVK 64 (148)
Q Consensus 18 ~~sp~~~~v~~~l~-----~~--gi~~~~~~i~~~~~~~~~~~~~p~g~vP~L~ 64 (148)
.+||.|++..-.+. +. |..+....++... .+++.+......+|++.
T Consensus 25 ~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 25 PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-YSSIASEFGVRGYPTIK 77 (104)
T ss_pred CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-CHhHHhhcCCccccEEE
Confidence 36888886654442 21 3334444555433 23444455567899874
No 249
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=20.10 E-value=1e+02 Score=17.78 Aligned_cols=14 Identities=29% Similarity=0.422 Sum_probs=10.7
Q ss_pred cCchHHHHHHHHHh
Q 032062 19 DCPFSQRALLTLEE 32 (148)
Q Consensus 19 ~sp~~~~v~~~l~~ 32 (148)
.||+|....-.+..
T Consensus 8 ~Cp~C~~~~~~l~~ 21 (98)
T cd02972 8 LCPYCYLFEPELEK 21 (98)
T ss_pred CCHhHHhhhHHHHH
Confidence 49999887777754
No 250
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=20.00 E-value=1.1e+02 Score=17.64 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.7
Q ss_pred eechHHHHHHHHhhCCC
Q 032062 70 VADSDVIVRIIEEKYPE 86 (148)
Q Consensus 70 l~eS~aI~~yL~~~~~~ 86 (148)
.++|..|+.-|.++||+
T Consensus 2 W~D~~eIA~~L~e~~pd 18 (63)
T TIGR03412 2 WTDSQEIAIALAEAHPD 18 (63)
T ss_pred ccCHHHHHHHHHHHCCC
Confidence 36789999999999986
Done!