BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032063
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 257 bits (657), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 117/148 (79%), Positives = 127/148 (85%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+I LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAMG 148
PEIA + KTD+ KY AR WTQKYAMG
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAMG 150
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 253 bits (645), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 113/146 (77%), Positives = 135/146 (92%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
+SKRI KEL DL+RDPPTSCSAGPV +D++HWQA+I+GP DSPYAGGVF ++IHFP DYP
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPK++F TK++HPNIN+NGNICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVP
Sbjct: 63 FKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVP 122
Query: 122 EIAHMCKTDKTKYESSARSWTQKYAM 147
EIAH+ KTD+ KYE++AR WT+KYA+
Sbjct: 123 EIAHIYKTDRPKYEATAREWTKKYAV 148
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 253 bits (645), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 130/147 (88%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL+DLQRDPP CSAGPV +D+FHWQATI+GP+DSPY GGVF +TIHFP DY
Sbjct: 6 MALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDY 65
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF TK++HPNINSNG+ICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLV
Sbjct: 66 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 125
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
P+IAH+ K+DK KY AR WTQKYAM
Sbjct: 126 PDIAHIYKSDKEKYNRLAREWTQKYAM 152
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 251 bits (642), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 117/147 (79%), Positives = 127/147 (86%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 6 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 65
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 66 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 125
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 126 PEIARIYKTDREKYNRIAREWTQKYAM 152
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 251 bits (641), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 117/147 (79%), Positives = 127/147 (86%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 79 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 138
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 139 PEIARIYKTDREKYNRIAREWTQKYAM 165
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 251 bits (641), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 117/147 (79%), Positives = 127/147 (86%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 251 bits (641), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 117/147 (79%), Positives = 127/147 (86%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 251 bits (640), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 117/147 (79%), Positives = 127/147 (86%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 121 PEIARIYKTDREKYNRIAREWTQKYAM 147
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 250 bits (639), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 127/147 (86%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 11 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 70
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 71 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 130
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + +TD+ KY AR WTQKYAM
Sbjct: 131 PEIARIYQTDREKYNRIAREWTQKYAM 157
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 249 bits (637), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 127/147 (86%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 11 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 70
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 71 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 130
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY +R WTQKYAM
Sbjct: 131 PEIARIYKTDRDKYNRISREWTQKYAM 157
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 249 bits (637), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 126/147 (85%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QW PALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 249 bits (636), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 126/147 (85%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLD L+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 249 bits (636), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 126/147 (85%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQAT +GPNDSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 249 bits (635), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 127/147 (86%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 68
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 69 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 128
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY +R WTQKYAM
Sbjct: 129 PEIARIYKTDRDKYNRISREWTQKYAM 155
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 248 bits (632), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 126/147 (85%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 4 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 63
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+I LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 124 PEIARIYKTDREKYNRIAREWTQKYAM 150
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 248 bits (632), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 126/147 (85%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+I LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 79 PFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 138
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 139 PEIARIYKTDREKYNRIAREWTQKYAM 165
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 247 bits (631), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 115/146 (78%), Positives = 126/146 (86%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DYP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 122 EIAHMCKTDKTKYESSARSWTQKYAM 147
EIA + KTD+ KY +R WTQKYAM
Sbjct: 124 EIARIYKTDRDKYNRISREWTQKYAM 149
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 247 bits (630), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 115/146 (78%), Positives = 126/146 (86%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DYP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 120
Query: 122 EIAHMCKTDKTKYESSARSWTQKYAM 147
EIA + KTD+ KY +R WTQKYAM
Sbjct: 121 EIARIYKTDRDKYNRISREWTQKYAM 146
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 246 bits (628), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 126/147 (85%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+I LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY +R WTQKYAM
Sbjct: 121 PEIARIYKTDRDKYNRISREWTQKYAM 147
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 246 bits (628), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 112/147 (76%), Positives = 132/147 (89%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI +EL DL +DPP+S SAGPV +D+FHWQATI+GP DSPYAGGVF ++IHFP DY
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKV F T+++HPNINSNG+ICLDIL++QWSPALTISKVLLSI SLLTDPNPDDPLV
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLV 120
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIAH+ KTD+++YE SAR WT+KYA+
Sbjct: 121 PEIAHVYKTDRSRYELSAREWTRKYAI 147
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 245 bits (626), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 115/146 (78%), Positives = 125/146 (85%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
ASKRI KEL DL RDPP CSAGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DYP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKVAF T+++HPNINSNG+I LDIL+ QWSPAL ISKVLLSICSLL DPNPDDPLVP
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVP 120
Query: 122 EIAHMCKTDKTKYESSARSWTQKYAM 147
EIA + KTD+ KY AR WTQKYAM
Sbjct: 121 EIARIYKTDREKYNRIAREWTQKYAM 146
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 245 bits (625), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 113/147 (76%), Positives = 127/147 (86%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL+DL RDPP CSAGPV +D+FHWQATI+GP +SPY GGVF +TIHFP DY
Sbjct: 4 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HPNINSNG+ICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ +Y AR WTQKYAM
Sbjct: 124 PEIARIYKTDRERYNQLAREWTQKYAM 150
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 244 bits (622), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 112/147 (76%), Positives = 126/147 (85%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DLQRDPP CSAGPV +D+FHWQATI+GP DS Y GGVF +T+HFP DY
Sbjct: 7 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPK+AF TK++HPNINSNG+ICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLV
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 126
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
P+IA + K+DK KY AR WTQKYAM
Sbjct: 127 PDIAQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 244 bits (622), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 112/147 (76%), Positives = 126/147 (85%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DLQRDPP CSAGPV +D+FHWQATI+GP DS Y GGVF +T+HFP DY
Sbjct: 19 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 78
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPK+AF TK++HPNINSNG+ICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLV
Sbjct: 79 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 138
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
P+IA + K+DK KY AR WTQKYAM
Sbjct: 139 PDIAQIYKSDKEKYNRHAREWTQKYAM 165
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 244 bits (622), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 112/147 (76%), Positives = 126/147 (85%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DLQRDPP CSAGPV +D+FHWQATI+GP DS Y GGVF +T+HFP DY
Sbjct: 3 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPK+AF TK++HPNINSNG+ICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 122
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
P+IA + K+DK KY AR WTQKYAM
Sbjct: 123 PDIAQIYKSDKEKYNRHAREWTQKYAM 149
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 243 bits (621), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 111/145 (76%), Positives = 127/145 (87%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A KRI KEL DL +DPPT+CSAGPV +DMFHWQATI+GP DSPY+GGVF + IHFP DYP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKV F TK++HPNINS G ICLDILK+QWSPALTISKVLLSI SLLTDPNPDDPLVP
Sbjct: 82 FKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVP 141
Query: 122 EIAHMCKTDKTKYESSARSWTQKYA 146
EIAH+ K+D+ +Y+ +AR W+QKYA
Sbjct: 142 EIAHLYKSDRMRYDQTAREWSQKYA 166
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 243 bits (621), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/147 (77%), Positives = 124/147 (84%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DL RDPP C AGPV +DMFHWQATI+GPNDSPY GGVF +TIHFP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPKVAF T+++HP INSNG+I LDIL+ QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
PEIA + KTD+ KY AR WTQKYAM
Sbjct: 121 PEIARIYKTDREKYNRIAREWTQKYAM 147
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 238 bits (608), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 110/147 (74%), Positives = 124/147 (84%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA KRI KEL DLQRDPP C AGPV +D+FHWQATI+GP DS Y GGVF +T+HFP DY
Sbjct: 7 MALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFKPPK+AF TK++HPNINSNG+I LDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLV
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 126
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYAM 147
P+IA + K+DK KY AR WTQKYAM
Sbjct: 127 PDIAQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 219 bits (558), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 97/146 (66%), Positives = 122/146 (83%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
MA +RI KELR++Q+DPP +CSAGPV +D+FHW ATI GP+DSPY GG+F + +HFP DY
Sbjct: 4 MAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDY 63
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
PFK P+V F TKV+HPNIN NG ICLDILK+QWSPALT+S+VLLSI SLLTDPNP DPL
Sbjct: 64 PFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLD 123
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYA 146
PE+A++ + +K ++E +AR WT+ YA
Sbjct: 124 PEVANVLRANKKQFEDTAREWTRMYA 149
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 188 bits (478), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 87/145 (60%), Positives = 112/145 (77%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
++KRI KEL D+ DPP +CSAGP ++++ W++TI+GP S Y GGVF + I F P+YP
Sbjct: 49 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYP 108
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKV F+T+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct: 109 FKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVG 168
Query: 122 EIAHMCKTDKTKYESSARSWTQKYA 146
IA T++ +++ AR WT++YA
Sbjct: 169 SIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 187 bits (474), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 87/145 (60%), Positives = 112/145 (77%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
++KRI KEL ++ DPP +CSAGP ++++ W++TI+GP S Y GGVF + I F PDYP
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
FKPPKV F+T+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct: 64 FKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVG 123
Query: 122 EIAHMCKTDKTKYESSARSWTQKYA 146
IA T++ +++ AR WT++YA
Sbjct: 124 SIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 145 bits (367), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 92/143 (64%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFK 63
+RI KE ++L +PP A PV E+ H+ I GP+ +PY GG + + + P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 64 PPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PPKV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ P PDDPL ++
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123
Query: 124 AHMCKTDKTKYESSARSWTQKYA 146
A K DK E AR W + YA
Sbjct: 124 AEHFKQDKNDAEHVARQWNKIYA 146
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 145 bits (367), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 92/143 (64%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFK 63
+RI KE ++L +PP A PV E+ H+ I GP+ +PY GG + + + P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 64 PPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PPKV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ P PDDPL ++
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123
Query: 124 AHMCKTDKTKYESSARSWTQKYA 146
A K DK E AR W + YA
Sbjct: 124 AEHFKQDKNDAEHVARQWNKIYA 146
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 94/145 (64%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 64 PPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 66 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
Query: 124 AHMCKTDKTKYESSARSWTQKYAMG 148
A KT++ + +AR+WT+ YAM
Sbjct: 126 AEQWKTNEAQAIETARAWTRLYAMN 150
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 94/144 (65%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 64 PPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 68 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 127
Query: 124 AHMCKTDKTKYESSARSWTQKYAM 147
A KT++ + +AR+WT+ YAM
Sbjct: 128 AEQWKTNEAQAIETARAWTRLYAM 151
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 94/145 (64%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 64 PPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 123
Query: 124 AHMCKTDKTKYESSARSWTQKYAMG 148
A KT++ + +AR+WT+ YAM
Sbjct: 124 AEQWKTNEAQAIETARAWTRLYAMN 148
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 94/144 (65%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 64 PPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 69 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 128
Query: 124 AHMCKTDKTKYESSARSWTQKYAM 147
A KT++ + +AR+WT+ YAM
Sbjct: 129 AEQWKTNEAQAIETARAWTRLYAM 152
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 94/144 (65%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 64 PPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 71 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 130
Query: 124 AHMCKTDKTKYESSARSWTQKYAM 147
A KT++ + +AR+WT+ YAM
Sbjct: 131 AEQWKTNEAQAIETARAWTRLYAM 154
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 5/146 (3%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A KR++++ + LQ+DPP S P ++ W A I GP+D+P+ GG F +++ F DYP
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
KPP V F +++FHPNI ++G+ICLDIL+ QWSP ++ +L SI SLL DPNP+ P
Sbjct: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
Query: 122 EIAHMCKTDKTKYESSAR-----SWT 142
E A M K +Y R SWT
Sbjct: 125 EAARMYSESKREYNRRVRDVVEQSWT 150
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 RILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKP 64
R+ KEL+D++ + A + F W I GP +PY GG F + I P DYP+ P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 65 PKVAFKTKVFHPNINSN-GNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PK+ F TK++HPNI+S G ICLD+LK +WSPALTI LLSI +LL+DP PDDP E+
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEV 146
Query: 124 AHMCKTDKTKYESSARSWTQKYAMG 148
A M K + + +A WT+ +A G
Sbjct: 147 AKMYKENHALFVKTASVWTKTFATG 171
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 140 bits (352), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Query: 1 MAS--KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPP 58
MAS KRI+KE L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118
DYP + PKV F TK++HPNI+ G ICLD+LK WSPAL I VLLSI +LL PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 119 LVPEIAHMCKTDKTKYESSARSWTQKYA 146
L ++A ++ ++ AR WT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 92/143 (64%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFK 63
KRI+KE L DP +A P +++ ++Q TI GP SPY G+F + ++ P DYP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 64 PPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PKV F TK++HPNI+ G ICLD+LK WSPAL I VLLSI +LL PNP+DPL ++
Sbjct: 68 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 127
Query: 124 AHMCKTDKTKYESSARSWTQKYA 146
A ++ ++ AR WT+ YA
Sbjct: 128 AEDWIKNEQGAKAKAREWTKLYA 150
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 137 bits (344), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 1 MAS--KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPP 58
MAS KRI+KE L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118
DYP + PKV F TK++HPNI+ G I LD+LK WSPAL I VLLSI +LL PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 119 LVPEIAHMCKTDKTKYESSARSWTQKYA 146
L ++A ++ ++ AR WT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 136 bits (342), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Query: 3 SKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
+KRI+KE++ ++ DP + V+E D+ H + T +GP +PY GG FVV I P +YP
Sbjct: 4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 63
Query: 62 FKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
FKPPK+ F TKV+HPNI+S G ICLDIL+ WSP +T+ L+S+ +LL P P+DP
Sbjct: 64 FKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQD 123
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYA 146
E+A D+ + +A WT+ YA
Sbjct: 124 AEVAQHYLRDRESFNKTAALWTRLYA 149
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 136 bits (342), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Query: 3 SKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
+KRI+KE++ ++ DP + V+E D+ H + T +GP +PY GG FVV I P +YP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 62 FKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
FKPPK+ F TKV+HPNI+S G ICLDILK WSP +T+ L+S+ +LL P P+DP
Sbjct: 63 FKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQD 122
Query: 121 PEIAHMCKTDKTKYESSARSWTQKYA 146
E+A D+ + +A WT+ YA
Sbjct: 123 AEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 1 MAS--KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPP 58
MAS KRI+KE L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118
DYP + PKV F TK++HP I+ G I LD+LK WSPAL I VLLSI +LL PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 119 LVPEIAHMCKTDKTKYESSARSWTQKYA 146
L ++A ++ ++ AR WT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 85/134 (63%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A +R++++ + LQ DPP S P ++ W A I GP +P+ G F + I F +YP
Sbjct: 5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYP 64
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
KPP V F +K+FHPN+ ++G+ICLDIL+ +WSP +S +L SI SLL +PNP+ P
Sbjct: 65 NKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANS 124
Query: 122 EIAHMCKTDKTKYE 135
+ A + + +K +YE
Sbjct: 125 QAAQLYQENKREYE 138
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 14/156 (8%)
Query: 5 RILKELRDLQR-------DPPTS------CSAGPVAEDMFHWQATIIGPNDSPYAGGVFV 51
R+LKEL D+Q+ +P + SA V D+ W+ I GP +PY GG F
Sbjct: 36 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 95
Query: 52 VTIHFPPDYPFKPPKVAFKTKVFHPNINSN-GNICLDILKEQWSPALTISKVLLSICSLL 110
+ I PPDYP+ PPK+ F TK++HPNI+S G ICLDILK +WSPALTI LLSI ++L
Sbjct: 96 LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML 155
Query: 111 TDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
DP P DP E+A M + + +A+ WT+ +A
Sbjct: 156 ADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 91/143 (63%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
+ +R++++ + LQ DPP S P +++ W+A I GP ++P+ G F +++ F +YP
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 64
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
KPP V F +K+FHPN+ ++G+ICLDIL+ +WSP ++ +L SI SLL +PNP+ P
Sbjct: 65 NKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANS 124
Query: 122 EIAHMCKTDKTKYESSARSWTQK 144
A + + ++ +YE + ++
Sbjct: 125 LAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 91/143 (63%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
+ +R++++ + LQ DPP S P +++ W+A I GP ++P+ G F +++ F +YP
Sbjct: 8 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 67
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
KPP V F +K+FHPN+ ++G+ICLDIL+ +WSP ++ +L SI SLL +PNP+ P
Sbjct: 68 NKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANS 127
Query: 122 EIAHMCKTDKTKYESSARSWTQK 144
A + + ++ +YE + ++
Sbjct: 128 LAAQLYQENRREYEKRVQQIVEQ 150
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 129 bits (323), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 90/145 (62%), Gaps = 5/145 (3%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A +R++++ + ++ D P SA P+ +++ W A IIGP D+PY G F + + F +YP
Sbjct: 5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
KPP V F +++FHPN+ +NG ICLDIL+ +W+P ++ +L SI SL DPNP P
Sbjct: 65 NKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANV 124
Query: 122 EIAHMCKTDKTKY-----ESSARSW 141
E A + K K++Y E+ +SW
Sbjct: 125 EAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 92/148 (62%), Gaps = 4/148 (2%)
Query: 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPF 62
+ R+ +EL L +PP + + M +A I+G ++PY GVF + + P YPF
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 63 KPPKVAFKTKVFHPNINSNGNICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDP 118
+PP++ F T ++HPNI+S G ICLD+L K W P+L I+ VL SI L+++PNPDDP
Sbjct: 66 EPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDP 125
Query: 119 LVPEIAHMCKTDKTKYESSARSWTQKYA 146
L+ +I+ K +K + +AR WT+K+A
Sbjct: 126 LMADISSEFKYNKPAFLKNARQWTEKHA 153
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 119 bits (297), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 92/147 (62%), Gaps = 3/147 (2%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
AS+R++KEL ++++ + V E ++ WQ I+ P++ PY G F + I+FP +Y
Sbjct: 5 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 63
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPL 119
PFKPPK+ FKTK++HPNI+ G +CL ++ E W PA +V+ S+ +L+ DP P+ PL
Sbjct: 64 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 123
Query: 120 VPEIAHMCKTDKTKYESSARSWTQKYA 146
++A D+ K+ +A +T+KY
Sbjct: 124 RADLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 119 bits (297), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 92/147 (62%), Gaps = 3/147 (2%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
AS+R++KEL ++++ + V E ++ WQ I+ P++ PY G F + I+FP +Y
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 61
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPL 119
PFKPPK+ FKTK++HPNI+ G +CL ++ E W PA +V+ S+ +L+ DP P+ PL
Sbjct: 62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 121
Query: 120 VPEIAHMCKTDKTKYESSARSWTQKYA 146
++A D+ K+ +A +T+KY
Sbjct: 122 RADLAEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 80/143 (55%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFK 63
+ + KE+ L DPP P ED+ Q TI GP +PYAGG+F + + D+P
Sbjct: 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 64 PPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
PPK F TK+FHPN+ +NG IC+++LK W+ L I VLL+I LL PNP+ L E
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
Query: 124 AHMCKTDKTKYESSARSWTQKYA 146
+ + +Y + AR T+ +
Sbjct: 136 GRLLLENYEEYAARARLLTEIHG 158
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
SKR+ +ELR L +A P +++F W AT+ GP D+ Y + +T+ FP DYP
Sbjct: 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYP 69
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
+KPP V F T +HPN++ +GNICLDILKE W+ + + +LLS+ SLL +PN PL
Sbjct: 70 YKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNA 129
Query: 122 EIAHMCKTDKTKYE 135
+ A M +++T+Y+
Sbjct: 130 QAADMW-SNQTEYK 142
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 14/157 (8%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPV-AEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
A KR++ E + L +PP AGP+ E+ F W+A I+GP D+ + GVF + FP DY
Sbjct: 10 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDIL-------------KEQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K+LLS+
Sbjct: 70 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 129
Query: 108 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQK 144
S+L +PN + + + M + D+ ++ A+ QK
Sbjct: 130 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 166
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 14/157 (8%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPV-AEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
A KR++ E + L +PP AGP+ E+ F W+A I+GP D+ + GVF + FP DY
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDIL-------------KEQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K+LLS+
Sbjct: 64 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 123
Query: 108 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQK 144
S+L +PN + + + M + D+ ++ A+ QK
Sbjct: 124 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 14/157 (8%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPV-AEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
A KR++ E + L +PP AGP+ E+ F W+A I+GP D+ + GVF + FP DY
Sbjct: 8 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 67
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDIL-------------KEQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K+LLS+
Sbjct: 68 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 127
Query: 108 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQK 144
S+L +PN + + + M + D+ ++ A+ QK
Sbjct: 128 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 164
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 14/157 (8%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPV-AEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
A KR++ E + L +PP AGP+ E+ F W+A I+GP D+ + GVF + FP DY
Sbjct: 7 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 66
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDIL-------------KEQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K+LLS+
Sbjct: 67 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 126
Query: 108 SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQK 144
S+L +PN + + + M + D+ ++ A+ QK
Sbjct: 127 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 163
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 77/127 (60%), Gaps = 14/127 (11%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAED-MFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
A KR+LKEL+ L +D P AGP +E+ +F W I GP D+PYA GVF + FP DY
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDIL-------------KEQWSPALTISKVLLSIC 107
P PPK+ F + HPNI NG +C+ IL +E+WSP ++ K+LLS+
Sbjct: 65 PLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVM 124
Query: 108 SLLTDPN 114
S+L++PN
Sbjct: 125 SMLSEPN 131
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 14/145 (9%)
Query: 8 KELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPK 66
K+L D++R P SAG V + D++ W+ +IGP D+ Y GG F + FP DYP KPPK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 67 VAFKTKVFHPNINSNGNICLDIL-------------KEQWSPALTISKVLLSICSLLTDP 113
+ F ++++HPNI+ GN+C+ IL +E+W P T+ +LLS+ S+LTDP
Sbjct: 70 MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDP 129
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSA 138
N + P + A M + + +++
Sbjct: 130 NFESPANVDAAKMQRENYAEFKKKV 154
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 109 bits (272), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 85/145 (58%), Gaps = 14/145 (9%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
S + ++L +L ++P SAG + + D++ W+ IIGP D+ Y GGVF + FP DY
Sbjct: 18 GSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDY 77
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDIL-------------KEQWSPALTISKVLLSIC 107
P +PPK+ F T+++HPN++ NG++C+ IL +E+W P T+ +++S+
Sbjct: 78 PLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVI 137
Query: 108 SLLTDPNPDDPLVPEIAHMCKTDKT 132
S+L DPN D P + A + D+
Sbjct: 138 SMLADPNGDSPANVDAAKEWREDRN 162
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 1 MASKRILKELRDLQRDPPTS---CSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFP 57
+A +RI +E +++ + TS V E+ + I GP D+PY GG + + I P
Sbjct: 21 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 80
Query: 58 PDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116
YPF PPKV F TK++HPNI+S G ICLDILK+QW+ A+T+ VLLS+ +LL PD
Sbjct: 81 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 140
Query: 117 DPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
DP +A+ K + ++ +AR W YA
Sbjct: 141 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 170
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 1 MASKRILKELRDLQRDPPTS---CSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFP 57
+A +RI +E +++ + TS V E+ + I GP D+PY GG + + I P
Sbjct: 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 64
Query: 58 PDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116
YPF PPKV F TK++HPNI+S G ICLDILK+QW+ A+T+ VLLS+ +LL PD
Sbjct: 65 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 124
Query: 117 DPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
DP +A+ K + ++ +AR W YA
Sbjct: 125 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 154
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 1 MASKRILKELRDLQRDPPTS---CSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFP 57
+A +RI +E +++ + TS V E+ + I GP D+PY GG + + I P
Sbjct: 8 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 67
Query: 58 PDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116
YPF PPKV F TK++HPNI+S G ICLDILK+QW+ A+T+ VLLS+ +LL PD
Sbjct: 68 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 127
Query: 117 DPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
DP +A+ K + ++ +AR W YA
Sbjct: 128 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 157
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 1 MASKRILKELRDLQRDPPTS---CSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFP 57
+A +RI +E +++ + TS V E+ + I GP D+PY GG + + I P
Sbjct: 57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 116
Query: 58 PDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116
YPF PPKV F TK++HPNI+S G ICLDILK+QW+ A+T+ VLLS+ +LL PD
Sbjct: 117 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 176
Query: 117 DPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
DP +A+ K + ++ +AR W YA
Sbjct: 177 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 206
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 1 MASKRILKELRDLQRDPPTS---CSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFP 57
+A +RI +E +++ + TS V E+ + I GP D+PY GG + + I P
Sbjct: 6 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 65
Query: 58 PDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116
YPF PPKV F TK++HPNI+S G ICLDILK+QW+ A+T+ VLLS+ +LL PD
Sbjct: 66 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 125
Query: 117 DPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
DP +A+ K + ++ +AR W YA
Sbjct: 126 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 155
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+ R+ +E + +RD P A P D+ +W+ I G + + GG++ +T+
Sbjct: 10 LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMA 69
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQ--WSPALTISKVLLSICSLLTDP 113
FP +YP +PPK F +FHPN+ +G +CL IL E+ W PA+TI ++LL I LL DP
Sbjct: 70 FPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDP 129
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N P E M K DK +YE R+ ++ A
Sbjct: 130 NIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 1 MASKRILKELRDLQRDPPTSC-SAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPD 59
MAS R++KEL DLQ+ PP + ++ W A ++ P+ PY F + I FPP+
Sbjct: 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE 62
Query: 60 YPFKPPKVAFKTKVFHPNINSNGNICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDP 118
YPFKPP + F TK++HPN++ NG ICL I+ E W P +VL ++ L+ PN +P
Sbjct: 63 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP 122
Query: 119 LVPEIAHMCKTDKTKYESSARSWTQKYAM 147
L ++A + + + +A +T ++ +
Sbjct: 123 LRMDLADLLTQNPELFRKNAEEFTLRFGV 151
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 1 MASKRILKELRDLQRDPPTSC-SAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPD 59
MAS R++KEL DLQ+ PP + ++ W A ++ P+ PY F + I FPP+
Sbjct: 1 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE 59
Query: 60 YPFKPPKVAFKTKVFHPNINSNGNICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDP 118
YPFKPP + F TK++HPN++ NG ICL I+ E W P +VL ++ L+ PN +P
Sbjct: 60 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP 119
Query: 119 LVPEIAHMCKTDKTKYESSARSWTQKYAM 147
L ++A + + + +A +T ++ +
Sbjct: 120 LRMDLADLLTQNPELFRKNAEEFTLRFGV 148
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 5 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 64
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G +CL IL+E W PA+TI ++LL I LL +P
Sbjct: 65 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 124
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DP E + ++ +YE R+ +K+A
Sbjct: 125 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%)
Query: 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPF 62
KR+ +EL L SA P ++++F W TI G + Y + +++ FP YP+
Sbjct: 32 GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91
Query: 63 KPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPE 122
P V F T +HPN+++ GNI LDILKE+WS + +LLSI SLL +PN D PL
Sbjct: 92 NAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 151
Query: 123 IAHMCK 128
A + K
Sbjct: 152 AAELWK 157
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 6 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 65
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G +CL IL+E W PA+TI ++LL I LL +P
Sbjct: 66 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 125
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DP E + ++ +YE R+ +K+A
Sbjct: 126 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 6 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 65
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G +CL IL+E W PA+TI ++LL I LL +P
Sbjct: 66 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 125
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DP E + ++ +YE R+ +K+A
Sbjct: 126 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G +CL IL+E W PA+TI ++LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DP E + ++ +YE R+ +K+A
Sbjct: 127 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G +CL IL+E W PA+TI ++LL I LL +P
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DP E + ++ +YE R+ +K+A
Sbjct: 124 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 9 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 68
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G +CL IL+E W PA+TI ++LL I LL +P
Sbjct: 69 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 128
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DP E + ++ +YE R+ +K+A
Sbjct: 129 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G +CL IL+E W PA+TI ++LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DP E + ++ +YE R+ +K+A
Sbjct: 127 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHP + +G +CL IL+E W PA+TI ++LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DP E + ++ +YE R+ +K+A
Sbjct: 127 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIHFPP 58
+R+ +E + ++D P A PV + D+ W+A I G + +AGGV+ +T+ +P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 59 DYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDPNPD 116
+YP KPPKV F +HPN+ +G ICL IL E W PA+T+ +++L + LL PNP+
Sbjct: 69 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 128
Query: 117 DPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
P +K +Y+ ++Y+
Sbjct: 129 SPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 158
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 4 KRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIHFPP 58
+R+ +E + ++D P A PV + D+ W+A I G + +AGGV+ +T+ +P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 59 DYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDPNPD 116
+YP KPPKV F +HPN+ +G ICL IL E W PA+T+ +++L + LL PNP+
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 126
Query: 117 DPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
P +K +Y+ ++Y+
Sbjct: 127 SPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G +CL IL+E W PA+TI ++LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N P E + ++ +YE R+ +K+A
Sbjct: 127 NIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G + L IL+E W PA+TI ++LL I LL +P
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DP E + ++ +YE R+ +K+A
Sbjct: 124 NIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G +CL IL+E W PA+TI ++LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N P E + ++ +YE R+ +K+A
Sbjct: 127 NIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAE-----DMFHWQATIIGPNDSPYAGGVFVVTIH 55
+A R+ +E + ++D P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKE--QWSPALTISKVLLSICSLLTDP 113
F DYP PPK F+ +FHPN+ +G + L IL+E W PA+TI ++LL I LL +P
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DP E + ++ +YE R+ +K+A
Sbjct: 124 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A RI K++ +L + P +C D +I P++ Y G FV + YP
Sbjct: 7 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYP 64
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
PPKV +T V+HPNI+ GN+CL+IL+E W P LTI+ ++ + L +PNP+DPL
Sbjct: 65 HDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNK 124
Query: 122 EIAHMCKTDKTKYESSARSWTQKYAMG 148
E A + + ++ +E + + + +G
Sbjct: 125 EAAEVLQNNRRLFEQNVQRSXRGGYIG 151
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 14/127 (11%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
+ K +L EL+ LQ +P V E D+++W+ I GP ++ Y GG F + FP DY
Sbjct: 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 67
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDIL-------------KEQWSPALTISKVLLSIC 107
P+ PP F TK++HPNI G++C+ IL E+W+P + +LLS+
Sbjct: 68 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 127
Query: 108 SLLTDPN 114
SLL +PN
Sbjct: 128 SLLNEPN 134
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 95.9 bits (237), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 14/127 (11%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
+ K +L EL+ LQ +P V E D+++W+ I GP ++ Y GG F + FP DY
Sbjct: 5 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 64
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDIL-------------KEQWSPALTISKVLLSIC 107
P+ PP F TK++HPNI G++C+ IL E+W+P + +LLS+
Sbjct: 65 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 124
Query: 108 SLLTDPN 114
SLL +PN
Sbjct: 125 SLLNEPN 131
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 92.8 bits (229), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 30 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDI 88
MFH GPN + Y GG++ V + P DYPF P + F K+ HPN++ ++G++CLD+
Sbjct: 34 MFH------GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDV 87
Query: 89 LKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
+ + W+P ++ V + + LLT PNP DPL + A + DK YE + + + YA
Sbjct: 88 INQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 92.8 bits (229), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A RI K++ +L + P +C D +I P++ Y G FV + YP
Sbjct: 27 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYP 84
Query: 62 FKPPKVAFKTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
PPKV +T V+HPNI+ GN+ L+IL+E W P LTI+ ++ + L +PNP+DPL
Sbjct: 85 HDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNK 144
Query: 122 EIAHMCKTDKTKYESSARSWTQKYAMG 148
E A + + ++ +E + + + +G
Sbjct: 145 EAAEVLQNNRRLFEQNVQRSMRGGYIG 171
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 8 KELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKV 67
++ DL+ + +A PV+EDM W+ I G +S + G VF +TIHF +Y + PP V
Sbjct: 30 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 89
Query: 68 AFKTKVFHPNIN-SNGNICLDILK--EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIA 124
F T FHPN++ G C+D L E+W+ T+S +LL++ +L++P ++P+ E A
Sbjct: 90 KFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAA 149
Query: 125 HMCKTDKTKYESSARSWTQ 143
+ D++ Y + R + +
Sbjct: 150 RILVKDESLYRTILRLFNR 168
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 39 GPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN-SNGNICLDILKEQWSPAL 97
GP +PY GGV+ V + P YPFK P + F K+FHPNI+ ++G +CLD++ + W+
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 98 TISKVLLSIC-SLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
++ + S LL PNP DPL + A M +Y+ + + QKYA
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%)
Query: 36 TIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSP 95
I+ P++ Y G + F YP +PPKV K+FHPNI+ GN+CL+IL+E WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 96 ALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSAR 139
AL + ++ + L +PNP+DPL + A + + ++ + R
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 39 GPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS-NGNICLDILKEQWSPAL 97
GP +PY G +++ + P DYPFK P + F ++ HPN++ +G++CLD++ + W+P
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 98 TISKVL-LSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
+ + + + LL PNP DPL + AH+ D+ +++ R +A
Sbjct: 106 QLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA 155
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
+ K ++KE+ +L+ + P +C + H + P++ Y GG F P Y
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQ------WSPALTISKVLLSICSLLTD-P 113
PPKV TK++HPNI G ICL +L+E W+P T+ V+ + SL TD
Sbjct: 74 NMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DDPL E A DK + + + ++YA
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Query: 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
+ K ++KE+ +L+ + P +C + H + P++ Y GG F P Y
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73
Query: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKEQ------WSPALTISKVLLSICSLLTD-P 113
PPKV TK++HPNI G ICL +L+E W+P T+ V+ + SL TD
Sbjct: 74 NMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 114 NPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146
N DDPL E A DK + + + ++YA
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A+ RI KEL + ++PP +C+ ++ W +G ++ YA V+ + I FP +YP
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 62 FKPPKVAFKTK-VFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLT 111
KPP V F K H ++ SNG+ICL +L + ++P+L+IS ++LSI S+L+
Sbjct: 81 LKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLS 131
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A+ RI KEL + +PP +C+ ++ W +G ++ YA V+ + I FP DYP
Sbjct: 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 62 FKPPKVAFKTK-VFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLT 111
KPP V F K H ++ SNG+ICL +L + ++P+L+IS ++LSI S+L+
Sbjct: 67 LKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 117
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 1 MAS--KRILKELRDLQRDPP--TSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHF 56
MAS KR+ KEL LQ DPP + + V + W + G + Y G F + F
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 57 PPDYPFKPPKVAFKTKVF--HPNINSNGNICLDILKEQWSPALTISKVLLSICSLLT 111
YPF P+V F + HP++ SNG+ICL IL E WSPAL++ V LSI S+L+
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 16/151 (10%)
Query: 5 RILKE----LRDLQRDPPTSC-------SAGPVAE-DMFHWQATIIGPNDSPYAGGVFVV 52
RI+KE L+ L D P + S P+ E D+ W+A I GP+D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 TIHFPPDYPFKPPKVAF-KTKVFHPNINS-NGNICLDILK-EQWSPALTISKVLLSICSL 109
I P YP PPK++F + + H N+ S G ICL+ILK E+W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 110 LTDPNPDDPLVPEIAHMCKT-DKTKYESSAR 139
L +P D PL +I ++ + D + Y+ +
Sbjct: 130 LREPVSDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 16/151 (10%)
Query: 5 RILKE----LRDLQRDPPTSC-------SAGPVAE-DMFHWQATIIGPNDSPYAGGVFVV 52
RI+KE L+ L D P + S P+ E D+ W+A I GP+D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 TIHFPPDYPFKPPKVAF-KTKVFHPNINS-NGNICLDILK-EQWSPALTISKVLLSICSL 109
I P YP PPK++F + + H N+ S G ICL+ILK E+W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 110 LTDPNPDDPLVPEIAHMCKT-DKTKYESSAR 139
L +P D PL +I ++ + D + Y+ +
Sbjct: 130 LREPVCDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 5 RILKE----LRDLQRDPPTSC-------SAGPVAE-DMFHWQATIIGPNDSPYAGGVFVV 52
RI+KE L+ L D P + S P+ E D+ W+A I GP+D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 TIHFPPDYPFKPPKVAF-KTKVFHPNINS-NGNICLDILK-EQWSPALTISKVLLSICSL 109
I P YP PPK++F + + H N+ S G ICL+ILK E+W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 110 LTDPNPDDPLVPEIAHMCKT-DKTKYESSAR 139
L +P D PL +I + + D + Y+ +
Sbjct: 130 LREPVCDSPLDVDIGAIIRCGDMSAYQGIVK 160
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYP 61
A++R+ ++ +++DP A P+ ++ W + GP +PY GG + + FP ++P
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 62 FKPPKVAFKTKVFHPN--INSNGNICLDILK---EQWSPALTISKVLLSICSLLTDPNP 115
FKPP + T PN N +CL I + W+PA ++S +L + S + + P
Sbjct: 75 FKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 13/92 (14%)
Query: 37 IIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK-----VFHPNINSNGNICLDIL-- 89
I GP D+PYA G F ++FP DYP PP V +T F+PN+ ++G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 90 -----KEQWSPAL-TISKVLLSICSLLTDPNP 115
+E+W+P + +VL+S+ SL+ P
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 1 MASKRILKELRDLQRD-----------PPTSCSAGPVAED-MFHWQATIIGPNDSPY--A 46
+++KRI+K+L+ L + P S + V D +++W + P DS Y A
Sbjct: 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGA 67
Query: 47 GGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNICLDILKEQWSP---ALTISKVL 103
G + +++ F DYP +PP V F T V+ P + G IC ++ + W+P A + K++
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLV 127
Query: 104 LSICSLLTDPNPDDPLVPEIAHMCK 128
L DD + PE H +
Sbjct: 128 LDRVFSQYKSRRDDDVNPEARHYLE 152
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 5 RILKELRDLQRD-PPTSCSAGPVAED---MFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
R+L+EL ++ P SCS G D M W TI+GP S + ++ ++I P+Y
Sbjct: 10 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69
Query: 61 PFKPPKVAFKTKVFHPNIN-SNGNICLDILK-EQWSPALTISKVLLSICSLLTDP 113
P PPKV F +K+ P +N + G + D W A T+ +LL + + P
Sbjct: 70 PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 5 RILKELRDLQRD-PPTSCSAGPVAED---MFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
R+L+EL ++ P SCS G D M W TI+GP S + ++ ++I P+Y
Sbjct: 9 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 68
Query: 61 PFKPPKVAFKTKVFHPNIN-SNGNICLDILK-EQWSPALTISKVLLSICSLLTDP 113
P PPKV F +K+ P +N + G + D W A T+ +LL + + P
Sbjct: 69 PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATP 123
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 RILKELRDLQRDPPTSCSAGPVAED----MFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
R+L+EL + Q+ + + +D + W IIGP + Y ++ + I P Y
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 61 PFKPPKVAFKTKVFHPNINSNGNI----CLDILKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ +NS+ + + +L +W + +I VL + L+
Sbjct: 99 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 RILKELRDLQRDPPTSCSAGPVAED----MFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
R+L+EL + Q+ + + +D + W IIGP + Y ++ + I P Y
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 61 PFKPPKVAFKTKVFHPNINSNGNI----CLDILKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ +NS+ + + +L +W + +I VL + L+
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 141
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 RILKELRDLQRDPPTSCSAGPVAED----MFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
R+L+EL + Q+ + + +D + W I+GP + Y ++ + I P Y
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 61 PFKPPKVAFKTKVFHPNINSNGNI----CLDILKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ +NS+ + + +L +W + +I VL + L+
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 RILKELRDLQRDPPTSCSAGPVAED----MFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
R+L+EL + Q+ + + +D + W IIGP + Y ++ + + P Y
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68
Query: 61 PFKPPKVAFKTKVFHPNINSNGNIC----LDILKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ IN++ + + +L +W + +I VL + L+
Sbjct: 69 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 121
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 RILKELRDLQRDPPTSCSAGPVAED----MFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
R+L+EL + Q+ + + +D + W IIGP + Y ++ + + P Y
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 61 PFKPPKVAFKTKVFHPNINSNGNIC----LDILKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ IN++ + + +L +W + +I VL + L+
Sbjct: 74 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 126
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 RILKELRDLQRDPPTSCSAGPVAED----MFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
R+L+EL + Q+ + + +D + W IIGP + Y ++ + + P Y
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67
Query: 61 PFKPPKVAFKTKVFHPNINSNGNIC----LDILKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ IN++ + + +L +W + +I VL + L+
Sbjct: 68 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 120
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 20/159 (12%)
Query: 2 ASKRILKELRDLQRDPP---TSCSAGPVAEDMFHWQATIIGPN-DSPY----------AG 47
A+ R++KELRD+ R + + V + ++ W ++ + DS G
Sbjct: 7 ATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEG 66
Query: 48 GVFV-VTIHFPPDYPFKPPKVAFKTKVFHPN-INSNGNICLDIL-KEQWSPALTISKVLL 104
F+ + F ++PF PP V + V + G IC+++L K+ WS A +I V++
Sbjct: 67 ADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIM 126
Query: 105 SICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQ 143
I + L V A+ + T+ + S +S Q
Sbjct: 127 QISATLVKGKAR---VQFGANKSQYSLTRAQQSYKSLVQ 162
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 RILKELRDLQRDPPTSCSAGPVAED----MFHWQATIIGPNDSPYAGGVFVVTIHFPPDY 60
R+L+EL + Q+ + + +D + W IIGP + Y ++ + + P Y
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 61 PFKPPKVAFKTKVFHPNINSNGNIC----LDILKEQWSPALTISKVLLSICSLL 110
P PP V F TK+ IN++ + + +L +W + +I VL + L+
Sbjct: 79 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 131
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 5 RILKELRDLQRDPPTSCSAG-----PVAED--MFHWQATIIGPNDSPYAGGVFVVTIHFP 57
R + L +L+R + S G A+D + +W TI G + + ++ +TI
Sbjct: 26 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCD 85
Query: 58 PDYPFKPPKVAFKTKVFHPNINSNGNIC---LDILKEQWSPALTISKVLLSI 106
+YP PP V F TK+ +++ G + L ILK W+ TI +L+S+
Sbjct: 86 DNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISL 136
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 5 RILKELRDLQRDPPTSCSAG-----PVAED--MFHWQATIIGPNDSPYAGGVFVVTIHFP 57
R + L +L+R + S G A+D + +W TI G + + ++ +TI
Sbjct: 22 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCD 81
Query: 58 PDYPFKPPKVAFKTKVFHPNINSNGNIC---LDILKEQWSPALTISKVLLSI 106
+YP PP V F TK+ +++ G + L ILK W+ TI +L+S+
Sbjct: 82 DNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISL 132
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 2 ASKRILKELRDLQRDPPTSC---SAGPVAEDMFHWQATIIGPN-DSPYAGGV-------- 49
AS R++KELRD+ R S + + ++ W + + DSP +
Sbjct: 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEG 87
Query: 50 ---FVVTIHFPPDYPFKPPKVAFKTKVFHPN-INSNGNICLDIL-KEQWSPALTISKVLL 104
++ F ++PF PP V V + G +C+++L K+ WS A +I V++
Sbjct: 88 IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIM 147
Query: 105 SICSLLT 111
I + L
Sbjct: 148 QINATLV 154
>pdb|3R3Q|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain
pdb|3R42|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain In Complex
With A Vps27 Psdp Peptide
Length = 162
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 52 VTIHFPPDYPFKPPKVAFKTKVFHPN-----------INSNGNICLDILKEQWSP-ALTI 99
V + P YP KPP ++ + F N I+SNG I L IL W P A+ +
Sbjct: 85 VIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDPAAMNL 143
Query: 100 SKVLLSICSLLTDPNPD 116
V+ + SLL +P D
Sbjct: 144 IMVVQELMSLLHEPPQD 160
>pdb|1UZX|A Chain A, A Complex Of The Vps23 Uev With Ubiquitin
Length = 169
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 57 PPDYPFKPPKVAFKTKVFHPN-----------INSNGNICLDILKEQWSP-ALTISKVLL 104
P YP KPP ++ + F N I+SNG I L IL W P A + V+
Sbjct: 96 PSXYPVKPPFISINLENFDXNTISSSLPIQEYIDSNGWIALPIL-HCWDPAAXNLIXVVQ 154
Query: 105 SICSLLTDPNPD 116
+ SLL +P D
Sbjct: 155 ELXSLLHEPPQD 166
>pdb|2QP2|A Chain A, Structure Of A Macpf/perforin-like Protein
Length = 511
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 76 PNINSNGNICLDILKEQWSPAL 97
N+NS GNICL + K ++ P +
Sbjct: 388 ENLNSKGNICLFMHKAKYDPNI 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,199,352
Number of Sequences: 62578
Number of extensions: 212950
Number of successful extensions: 597
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 125
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)