Query 032063
Match_columns 148
No_of_seqs 134 out of 1099
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 09:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 2.8E-57 6.1E-62 314.9 15.5 148 1-148 1-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 4.9E-55 1.1E-59 309.7 17.1 146 2-147 6-152 (153)
3 PLN00172 ubiquitin conjugating 100.0 2E-52 4.2E-57 297.6 18.3 147 1-147 1-147 (147)
4 PTZ00390 ubiquitin-conjugating 100.0 4.4E-52 9.5E-57 297.1 18.4 147 2-148 3-149 (152)
5 KOG0419 Ubiquitin-protein liga 100.0 2.5E-52 5.3E-57 283.1 14.9 144 2-145 5-148 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 6.4E-47 1.4E-51 263.6 15.7 144 2-145 6-163 (171)
7 KOG0418 Ubiquitin-protein liga 100.0 1.5E-46 3.2E-51 268.9 14.6 147 2-148 4-154 (200)
8 KOG0424 Ubiquitin-protein liga 100.0 3.8E-46 8.3E-51 256.3 15.2 148 1-148 4-158 (158)
9 KOG0426 Ubiquitin-protein liga 100.0 9.9E-46 2.2E-50 251.2 14.0 146 1-146 4-163 (165)
10 PF00179 UQ_con: Ubiquitin-con 100.0 3.8E-45 8.3E-50 258.3 15.1 138 5-142 1-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 6.7E-45 1.4E-49 257.4 16.1 139 4-142 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 3E-44 6.6E-49 255.1 17.2 143 4-146 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 1.7E-43 3.7E-48 243.3 12.5 142 3-145 31-172 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 5.3E-40 1.2E-44 224.9 14.1 146 1-147 2-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 1.3E-38 2.8E-43 224.7 11.9 144 2-148 4-149 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 8.9E-37 1.9E-41 215.8 12.3 142 2-146 29-174 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 2.5E-37 5.3E-42 218.9 8.0 146 3-148 12-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 4.8E-33 1E-37 189.0 11.1 112 1-113 15-127 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 3.5E-29 7.6E-34 183.0 14.4 112 2-115 6-120 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 1.2E-25 2.7E-30 164.9 13.7 139 5-144 23-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 5.7E-23 1.2E-27 153.2 9.5 108 2-112 12-122 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 5.4E-18 1.2E-22 147.0 8.5 109 4-112 854-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 1E-15 2.2E-20 133.1 10.4 111 3-113 284-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 1.8E-14 4E-19 98.7 7.8 109 4-112 8-123 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.9 6.8E-09 1.5E-13 72.7 7.4 67 46-112 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.9 6.8E-09 1.5E-13 69.5 5.9 92 50-142 13-110 (122)
27 PF05743 UEV: UEV domain; Int 98.6 1.2E-07 2.5E-12 65.4 6.0 68 44-112 42-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.4 3.8E-07 8.3E-12 63.6 4.6 96 3-103 26-135 (161)
29 KOG2391 Vacuolar sorting prote 97.9 0.00011 2.3E-09 58.2 9.4 77 37-114 55-139 (365)
30 KOG3357 Uncharacterized conser 97.9 4E-05 8.6E-10 52.8 5.4 95 3-103 29-138 (167)
31 PF14462 Prok-E2_E: Prokaryoti 97.3 0.004 8.6E-08 42.9 8.8 89 20-111 13-120 (122)
32 PF05773 RWD: RWD domain; Int 96.9 0.0044 9.6E-08 41.1 6.4 69 4-73 4-74 (113)
33 smart00591 RWD domain in RING 96.8 0.023 4.9E-07 37.4 8.9 27 46-72 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.9 0.094 2E-06 37.9 8.6 62 51-112 56-126 (162)
35 PF09765 WD-3: WD-repeat regio 93.8 0.16 3.6E-06 40.0 5.5 85 4-111 102-187 (291)
36 KOG4018 Uncharacterized conser 87.7 1.7 3.6E-05 32.7 5.3 60 7-69 8-70 (215)
37 KOG0309 Conserved WD40 repeat- 84.0 5.5 0.00012 35.6 7.3 67 5-72 424-491 (1081)
38 TIGR03737 PRTRC_B PRTRC system 79.0 3.5 7.6E-05 31.5 4.0 39 72-114 132-174 (228)
39 PF14460 Prok-E2_D: Prokaryoti 76.7 4.2 9.1E-05 29.6 3.8 39 71-112 90-131 (175)
40 PF06113 BRE: Brain and reprod 76.0 8.9 0.00019 30.9 5.7 59 44-108 61-122 (333)
41 cd00421 intradiol_dioxygenase 55.5 19 0.00041 25.3 3.5 25 46-70 64-89 (146)
42 KOG0177 20S proteasome, regula 54.8 3.7 8E-05 30.4 -0.2 32 81-112 135-166 (200)
43 smart00340 HALZ homeobox assoc 54.5 11 0.00025 20.9 1.7 14 3-16 21-34 (44)
44 cd03457 intradiol_dioxygenase_ 54.0 20 0.00043 26.5 3.5 25 46-70 85-109 (188)
45 PF06113 BRE: Brain and reprod 53.1 36 0.00079 27.5 5.1 27 46-72 304-330 (333)
46 cd03459 3,4-PCD Protocatechuat 47.6 30 0.00064 24.8 3.5 25 46-70 71-100 (158)
47 KOG0662 Cyclin-dependent kinas 47.1 22 0.00049 26.7 2.9 54 62-115 167-224 (292)
48 cd07981 TAF12 TATA Binding Pro 45.2 70 0.0015 19.6 4.5 42 105-146 6-47 (72)
49 KOG4445 Uncharacterized conser 40.4 36 0.00079 27.3 3.2 26 47-72 44-69 (368)
50 PF14135 DUF4302: Domain of un 38.5 1.2E+02 0.0026 22.9 5.9 70 2-82 10-103 (235)
51 cd05845 Ig2_L1-CAM_like Second 38.2 74 0.0016 20.7 4.0 26 45-72 16-41 (95)
52 KOG3285 Spindle assembly check 37.9 63 0.0014 23.9 3.9 55 2-67 120-174 (203)
53 PF03847 TFIID_20kDa: Transcri 37.0 99 0.0021 18.8 4.3 42 105-146 4-45 (68)
54 COG0544 Tig FKBP-type peptidyl 36.9 90 0.002 26.2 5.3 13 50-62 211-223 (441)
55 TIGR02423 protocat_alph protoc 36.0 53 0.0011 24.4 3.4 25 46-70 95-124 (193)
56 cd03463 3,4-PCD_alpha Protocat 33.3 63 0.0014 23.8 3.4 23 47-69 92-119 (185)
57 KOG2851 Eukaryotic-type DNA pr 33.1 95 0.0021 25.6 4.6 30 80-109 335-369 (412)
58 PF12018 DUF3508: Domain of un 31.7 71 0.0015 25.0 3.7 30 117-146 237-266 (281)
59 PF13950 Epimerase_Csub: UDP-g 30.0 42 0.00092 20.0 1.7 19 91-109 36-54 (62)
60 PF11333 DUF3135: Protein of u 29.1 1.2E+02 0.0026 19.3 3.8 23 122-144 8-30 (83)
61 PF03366 YEATS: YEATS family; 26.8 1.7E+02 0.0038 18.5 4.7 42 31-74 2-43 (84)
62 PRK15486 hpaC 4-hydroxyphenyla 25.6 2.6E+02 0.0057 20.1 6.8 69 6-91 6-77 (170)
63 KOG0700 Protein phosphatase 2C 24.7 1.9E+02 0.0042 24.0 5.1 102 6-112 250-359 (390)
64 COG2819 Predicted hydrolase of 24.5 1.2E+02 0.0025 23.9 3.6 31 42-72 15-47 (264)
65 PF00845 Gemini_BL1: Geminivir 24.3 1.8E+02 0.0039 22.7 4.6 46 28-74 100-154 (276)
66 PF00718 Polyoma_coat: Polyoma 24.2 1.7E+02 0.0037 23.2 4.5 41 43-86 192-234 (297)
67 KOG1047 Bifunctional leukotrie 24.2 78 0.0017 27.6 2.8 29 43-72 248-279 (613)
68 TIGR02439 catechol_proteo cate 23.6 1.1E+02 0.0024 24.2 3.4 25 46-70 179-221 (285)
69 PF00779 BTK: BTK motif; Inte 23.3 30 0.00064 18.0 0.1 16 73-88 2-18 (32)
70 PF12065 DUF3545: Protein of u 23.1 60 0.0013 19.4 1.4 12 4-15 37-48 (59)
71 PF11745 DUF3304: Protein of u 22.6 35 0.00077 23.0 0.5 20 80-99 49-68 (118)
72 PF05751 FixH: FixH; InterPro 22.6 2.6E+02 0.0056 19.0 5.8 54 5-59 44-97 (146)
73 KOG4274 Positive cofactor 2 (P 22.3 1.6E+02 0.0035 25.9 4.3 81 6-117 624-708 (742)
74 PF12652 CotJB: CotJB protein; 22.3 2E+02 0.0043 18.1 3.8 31 116-146 24-54 (78)
75 PF14798 Ca_hom_mod: Calcium h 22.0 85 0.0019 24.3 2.5 23 125-147 215-238 (251)
76 cd03461 1,2-HQD Hydroxyquinol 21.8 1.3E+02 0.0027 23.8 3.4 25 46-70 171-213 (277)
77 PF09280 XPC-binding: XPC-bind 21.8 1.4E+02 0.0031 17.6 3.0 21 119-139 34-54 (59)
78 PF04881 Adeno_GP19K: Adenovir 21.7 1E+02 0.0022 21.5 2.5 19 27-45 44-62 (139)
79 cd03464 3,4-PCD_beta Protocate 20.4 1.5E+02 0.0031 22.6 3.4 25 46-70 121-152 (220)
80 PF07380 Pneumo_M2: Pneumoviru 20.4 1.9E+02 0.0042 18.4 3.4 19 53-71 6-24 (89)
81 KOG4690 Uncharacterized conser 20.2 1.9E+02 0.0041 20.5 3.6 36 112-147 77-119 (165)
82 TIGR02422 protocat_beta protoc 20.1 1.5E+02 0.0032 22.5 3.4 24 46-69 116-146 (220)
83 cd03460 1,2-CTD Catechol 1,2 d 20.1 1.4E+02 0.0031 23.5 3.4 16 46-61 175-190 (282)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-57 Score=314.87 Aligned_cols=148 Identities=76% Similarity=1.371 Sum_probs=146.0
Q ss_pred ChHHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccC
Q 032063 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS 80 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~ 80 (148)
+|.+||++|++++++++++|+++.+..+|+++|+++|.||.+||||||+|.+.|.||++||++||+|+|.|+||||||+.
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccccccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhCC
Q 032063 81 NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||+|+|.++|+|+.+|..||.+|+++|.+||+++|++.++|.+|+.|+.+|.++||+||+||||+
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-55 Score=309.69 Aligned_cols=146 Identities=58% Similarity=1.138 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHhhhCCCCCeeeeecCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccC
Q 032063 2 ASKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS 80 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~ 80 (148)
|.+||++|++.|+++++.++++.|.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++||||||++
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 678999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccccccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhC
Q 032063 81 NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 147 (148)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|+||+++|.+.|+|++++.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+++++||.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 3
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2e-52 Score=297.61 Aligned_cols=147 Identities=71% Similarity=1.306 Sum_probs=144.5
Q ss_pred ChHHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccC
Q 032063 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS 80 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~ 80 (148)
||.+||++|+++|+++++.|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||++
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccccccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhC
Q 032063 81 NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 147 (148)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|.+|+++|.++|++|+++||.
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.4e-52 Score=297.10 Aligned_cols=147 Identities=48% Similarity=0.881 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCC
Q 032063 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN 81 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~ 81 (148)
+.|||++|+++|+++++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+++
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecccccccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhCC
Q 032063 82 GNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 148 (148)
Q Consensus 82 G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++||++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-52 Score=283.10 Aligned_cols=144 Identities=42% Similarity=0.905 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCC
Q 032063 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN 81 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~ 81 (148)
|-+||++|+++++++++.|++..|.++|++.|.+.|.||.+|||+||+|++.|.|+++||.+||.|+|++..||||||++
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecccccccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 032063 82 GNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 145 (148)
Q Consensus 82 G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
|.+|+|+|...|+|.+++.+||.+||+||.+|++++|+|.|||++|.+++.+|.++++..+.|.
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999988763
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-47 Score=263.61 Aligned_cols=144 Identities=38% Similarity=0.819 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHhhhCCCCCeeeeecCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccC
Q 032063 2 ASKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS 80 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~ 80 (148)
|..-|+++|++|++++..|+.+...++ |+++|.|.|+||++|.|+||.|+..+.||.+||.+||+++|.+.+||||||+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 346799999999999999999988775 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccccc-------------ccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 032063 81 NGNICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 145 (148)
Q Consensus 81 ~G~vcl~~l~-------------~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
+|.+|++||. +.|+|..|+++||.+|.+||.+||.++|+|.+||+.|++++++|+++++.+|++.
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999999994 4699999999999999999999999999999999999999999999999998864
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=268.94 Aligned_cols=147 Identities=44% Similarity=0.809 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHhhhCC---CCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccc
Q 032063 2 ASKRILKELRDLQRDP---PTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNI 78 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~---~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv 78 (148)
|.+||++|++++.+++ ..|+.+...++|+.+..+.|.||++||||||.|.+.|++|++|||+||+|+|.|.||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999987 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCceecccccccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhCC
Q 032063 79 NS-NGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 148 (148)
Q Consensus 79 ~~-~G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
++ +|.||+|++++.|++++|+..+|.+||++|..|++.+|...+.|++|.++++.|.+.||.|+..||+|
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 96 99999999999999999999999999999999999999999999999999999999999999999986
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-46 Score=256.34 Aligned_cols=148 Identities=37% Similarity=0.769 Sum_probs=142.3
Q ss_pred ChHHHHHHHHHHhhhCCCCCeeeeecC-----CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccc
Q 032063 1 MASKRILKELRDLQRDPPTSCSAGPVA-----EDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFH 75 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~-----~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~H 75 (148)
.|+.||++|-+.|.++++-|+++.|.. .|++.|++.|.|+++|+||||.|.+++.||++||++||+++|.+++||
T Consensus 4 ~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~H 83 (158)
T KOG0424|consen 4 IALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFH 83 (158)
T ss_pred hHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcC
Confidence 368899999999999999999999886 379999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccccccc--CCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhCC
Q 032063 76 PNINSNGNICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 148 (148)
Q Consensus 76 pnv~~~G~vcl~~l~~~--W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
||||++|.|||++|.+. |+|++||..||..||+||.+||+.+|+|.||...|.+|+.+|.+++|.++++||..
T Consensus 84 PNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 84 PNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 99999999999999754 99999999999999999999999999999999999999999999999999999863
No 9
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-46 Score=251.16 Aligned_cols=146 Identities=38% Similarity=0.829 Sum_probs=140.4
Q ss_pred ChHHHHHHHHHHhhhCCCCCeeeeecC-CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccccccc
Q 032063 1 MASKRILKELRDLQRDPPTSCSAGPVA-EDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN 79 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~-~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~ 79 (148)
+|+|||++||++|-.+++.|+.+.|.+ +|+++|.+.|.||++|+|+||.|..++.||.+||.+||+++|...+|||||+
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 489999999999999999999999887 6899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccccc-------------ccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 032063 80 SNGNICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146 (148)
Q Consensus 80 ~~G~vcl~~l~-------------~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
++|+||+++|. +.|+|.++++.||.++.+||.+||.++.+|.+|+.++++|+++|.+.|+..++|.-
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKTL 163 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 99999999984 57999999999999999999999999999999999999999999999999998853
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.8e-45 Score=258.34 Aligned_cols=138 Identities=54% Similarity=1.091 Sum_probs=129.0
Q ss_pred HHHHHHHHhhhCCCCCeeeeecCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCCCc
Q 032063 5 RILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGN 83 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G~ 83 (148)
||++|+++++++++.|+.+.+.++ |+.+|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccc-cCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 032063 84 ICLDILKE-QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWT 142 (148)
Q Consensus 84 vcl~~l~~-~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 142 (148)
||+++|.. .|+|++++.+||.+|+++|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999974 599999999999999999999999999999999999999999999999984
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=6.7e-45 Score=257.42 Aligned_cols=139 Identities=55% Similarity=1.094 Sum_probs=135.8
Q ss_pred HHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCCCc
Q 032063 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGN 83 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G~ 83 (148)
|||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+.++||||+++|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccc-CCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 032063 84 ICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWT 142 (148)
Q Consensus 84 vcl~~l~~~-W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 142 (148)
||++++... |+|++++.+||.+|+++|.+|+.++++|.+||.+|++|+++|.++|+.|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999876 99999999999999999999999999999999999999999999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3e-44 Score=255.13 Aligned_cols=143 Identities=58% Similarity=1.127 Sum_probs=139.2
Q ss_pred HHHHHHHHHhhhCCCCCeeeeecCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCCC
Q 032063 4 KRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNG 82 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G 82 (148)
+||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998876 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccc-ccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 032063 83 NICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146 (148)
Q Consensus 83 ~vcl~~l~-~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.||++++. ++|+|++++.+||.+|+++|.+|+.++++|.+|+++|+++++.|+++|+++++|++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999985
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=243.34 Aligned_cols=142 Identities=39% Similarity=0.764 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCCC
Q 032063 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNG 82 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G 82 (148)
+|||++|+..|+-...+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.||||||-.|
T Consensus 31 ~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~G 110 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSG 110 (175)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccccccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 032063 83 NICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKY 145 (148)
Q Consensus 83 ~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
.||+|||+++|+..++++.||.+||++|-+||.++|+|..||.++. |.++|++.+.++.++.
T Consensus 111 nIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 111 NICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999998 9999999998877654
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-40 Score=224.92 Aligned_cols=146 Identities=38% Similarity=0.794 Sum_probs=136.7
Q ss_pred ChHHHHHHHHHHhhhCCCCCee-eeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccccccc
Q 032063 1 MASKRILKELRDLQRDPPTSCS-AGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN 79 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~-~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~ 79 (148)
+|.+||.+|+.+|+++....+. +...+.|+..|.+.|. |.+-||..|.|+++|.||.+|||+||.|.|.|.|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4789999999999998766443 3445679999999998 8999999999999999999999999999999999999999
Q ss_pred CCCceecccc-cccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhC
Q 032063 80 SNGNICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAM 147 (148)
Q Consensus 80 ~~G~vcl~~l-~~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+.|.+|+.++ .++|.|++...+||+.|..++.+|+++.|++.++|..|..|+..|.++|.++++||+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999988 5899999999999999999999999999999999999999999999999999999985
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=224.71 Aligned_cols=144 Identities=35% Similarity=0.724 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccC-
Q 032063 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS- 80 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~- 80 (148)
+.||+..|...|.... ..+...++++++++|.+.||.+|||+||++++++.+|++||++.|.|.|.++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~s~---yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMSD---YEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhcC---CeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 4588999988887643 457777888999999999999999999999999999999999999999999999999995
Q ss_pred CCceecccccccCCCccCHHHHHH-HHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhCC
Q 032063 81 NGNICLDILKEQWSPALTISKVLL-SICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~-~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||++.++..|+|.+++..|+. -|-.||..||+.+|+|.|||.+|.+++++|.++++++++|||++
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999987 46679999999999999999999999999999999999999974
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-37 Score=215.81 Aligned_cols=142 Identities=36% Similarity=0.725 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHhhhCCCCCeee----eecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 032063 2 ASKRILKELRDLQRDPPTSCSA----GPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPN 77 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~----~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpn 77 (148)
|+-||++|..+++- +++++. .+.+-+..+.+++|. |+++.|+||.|.|.+.+|+.||+.||+|+++|.+||||
T Consensus 29 a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 29 ALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred HHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 56788888777764 333442 222333336999998 99999999999999999999999999999999999999
Q ss_pred ccCCCceecccccccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 032063 78 INSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146 (148)
Q Consensus 78 v~~~G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
|+.+|.||++||+++|+|+.+|.+|+-.|+.+|.+|+++||+|.+||..+++|++.|...+|..-..++
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999998766554
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-37 Score=218.91 Aligned_cols=146 Identities=40% Similarity=0.703 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCCC
Q 032063 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNG 82 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G 82 (148)
+|.|.+|++.+...|+.|+.|.+.++|+....+.|.||.||||++|.|++.+.+.++||.+||+-+|+|.||||||-.||
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccccccCCCccCHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhCC
Q 032063 83 NICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYAMG 148 (148)
Q Consensus 83 ~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+||.+.|..+|+|..+|..||..|+.+|..|++++++|.+|+++..++-++|.++||.++.-||++
T Consensus 92 EICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred eehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999998874
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-33 Score=189.01 Aligned_cols=112 Identities=38% Similarity=0.790 Sum_probs=107.3
Q ss_pred ChHHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEeccc-cccccc
Q 032063 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKV-FHPNIN 79 (148)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i-~Hpnv~ 79 (148)
+|.+||++|+.+|+.+++.|+.+. +.+|+.+|.+.+.|.+||.|+|..|.+.+.||+.||++.|.|.|..++ .|||||
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 378999999999999999999887 789999999999999999999999999999999999999999999876 799999
Q ss_pred CCCceecccccccCCCccCHHHHHHHHHHhhcCC
Q 032063 80 SNGNICLDILKEQWSPALTISKVLLSICSLLTDP 113 (148)
Q Consensus 80 ~~G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p 113 (148)
+||.||+++|.+.|+|++++.+|..+|.+||.+-
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999864
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-29 Score=183.01 Aligned_cols=112 Identities=36% Similarity=0.788 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCC
Q 032063 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN 81 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~ 81 (148)
|.|||++||+.|.++|.+++.+.|..+|+.+|+.+|.||++|||+||.|+..|.||.+||++||.|+.+|+ +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 5555567
Q ss_pred Cceecccc---cccCCCccCHHHHHHHHHHhhcCCCC
Q 032063 82 GNICLDIL---KEQWSPALTISKVLLSICSLLTDPNP 115 (148)
Q Consensus 82 G~vcl~~l---~~~W~p~~~~~~il~~l~~ll~~p~~ 115 (148)
-++|+++. .+.|+|++++.+||..|.++|.+-.+
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 79999876 48999999999999999999986443
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-25 Score=164.92 Aligned_cols=139 Identities=25% Similarity=0.432 Sum_probs=128.2
Q ss_pred HHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC--CCCeeeEecccccccccC-C
Q 032063 5 RILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPF--KPPKVAFKTKVFHPNINS-N 81 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~--~pP~v~f~~~i~Hpnv~~-~ 81 (148)
.|+.||..+.+.+.+|+++.|+-.|-+.|.++|.+ ..|.|+||+|+|.|.+|++||. +-|+|.|.++++||+|.+ +
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 57889999999999999999999999999999994 6678999999999999999995 679999999999999996 9
Q ss_pred CceecccccccCCCcc-CHHHHHHHHHHhhcCCCCCCC--ccHHHHHHHHhCHHHHHHHHHHHHHH
Q 032063 82 GNICLDILKEQWSPAL-TISKVLLSICSLLTDPNPDDP--LVPEIAHMCKTDKTKYESSARSWTQK 144 (148)
Q Consensus 82 G~vcl~~l~~~W~p~~-~~~~il~~l~~ll~~p~~~~~--~n~~a~~~~~~~~~~f~~~~~~~~~~ 144 (148)
+.+|+.-....|.... +|+.+|..||..|.+|+...+ .|+||+.+|++++++|.++++++++.
T Consensus 102 keLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 102 KELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred cceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999987777799886 799999999999999987665 49999999999999999999999874
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.7e-23 Score=153.19 Aligned_cols=108 Identities=36% Similarity=0.777 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCC
Q 032063 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN 81 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~ 81 (148)
|.|||++|-++++ +|-..+...|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ +..+.-|
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 6899999999999 777778889999999999999999999999999999999999999999999999988 5556668
Q ss_pred Cceecccc---cccCCCccCHHHHHHHHHHhhcC
Q 032063 82 GNICLDIL---KEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 82 G~vcl~~l---~~~W~p~~~~~~il~~l~~ll~~ 112 (148)
.+||+++. .+.|.|+++|...|..|..+|-.
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 89999987 48899999999999999998854
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.4e-18 Score=146.95 Aligned_cols=109 Identities=32% Similarity=0.666 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecc--cccccccCC
Q 032063 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK--VFHPNINSN 81 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~--i~Hpnv~~~ 81 (148)
+..+.|++-|..+.+.|++|...++.+....+.|.|+.+|||.+|.|.|.+.||.+||.+||.+...+. .++||.|++
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 456778888888899999999999988889999999999999999999999999999999999999875 579999999
Q ss_pred Cceeccccc-------ccCCCccCHHHHHHHHHHhhcC
Q 032063 82 GNICLDILK-------EQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 82 G~vcl~~l~-------~~W~p~~~~~~il~~l~~ll~~ 112 (148)
|+||+++|. +.|+|+.++.++|.+||.|+-+
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 999999994 6799999999999999998864
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1e-15 Score=133.08 Aligned_cols=111 Identities=39% Similarity=0.733 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecc---ccccccc
Q 032063 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK---VFHPNIN 79 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~---i~Hpnv~ 79 (148)
.+|+++|++-+.++.+.|+.+.+.+..+....+.|.||.+|||++|.|.|.|.||..||..||.+.+.+. .+.||.|
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999877 5899999
Q ss_pred CCCceeccccc-------ccCCCc-cCHHHHHHHHHHhhcCC
Q 032063 80 SNGNICLDILK-------EQWSPA-LTISKVLLSICSLLTDP 113 (148)
Q Consensus 80 ~~G~vcl~~l~-------~~W~p~-~~~~~il~~l~~ll~~p 113 (148)
.+|+||+++|- +.|+|. .++.++|.+||.++.+-
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 99999999882 679999 79999999999998754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.8e-14 Score=98.74 Aligned_cols=109 Identities=28% Similarity=0.481 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhhCCCCCeeeeec-C-CC--CceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEeccccccccc
Q 032063 4 KRILKELRDLQRDPPTSCSAGPV-A-ED--MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN 79 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~-~-~n--~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~ 79 (148)
-||.+|+.+=++--.+|....-. + +| +..|..+|.||+.|+||+.+|.++|....+||..||+|+|.+.+--.-|.
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 36788887776654443333222 2 23 77899999999999999999999999999999999999999999888888
Q ss_pred C-CCceecccc--cccCCCccCHHHHHHHHHHhhcC
Q 032063 80 S-NGNICLDIL--KEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 80 ~-~G~vcl~~l--~~~W~p~~~~~~il~~l~~ll~~ 112 (148)
. +|.|.-..+ -.+|.-.+++..+|.+++.++..
T Consensus 88 ~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 88 SSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 4 777776433 38999999999999999986654
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.90 E-value=6.8e-09 Score=72.67 Aligned_cols=67 Identities=33% Similarity=0.790 Sum_probs=61.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeEeccc---ccccccCCCceec---ccccccCCCccCHHHHHHHHHHhhcC
Q 032063 46 AGGVFVVTIHFPPDYPFKPPKVAFKTKV---FHPNINSNGNICL---DILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~~pP~v~f~~~i---~Hpnv~~~G~vcl---~~l~~~W~p~~~~~~il~~l~~ll~~ 112 (148)
.|+.+.++|.||+.||..||.|....+- +-|||+.+|.+|+ +..-+.|.|.-++.++|.+.+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999987654 6899999999999 77779999999999999999999984
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.8e-09 Score=69.53 Aligned_cols=92 Identities=20% Similarity=0.410 Sum_probs=68.2
Q ss_pred EEEEEEcCCCCCCCCCeeeEecccc-cccccCCCceecccc-cccCCCccCHHHHHHHHHHhhcCCC--CCCCccHHHHH
Q 032063 50 FVVTIHFPPDYPFKPPKVAFKTKVF-HPNINSNGNICLDIL-KEQWSPALTISKVLLSICSLLTDPN--PDDPLVPEIAH 125 (148)
Q Consensus 50 f~~~i~fp~~yP~~pP~v~f~~~i~-Hpnv~~~G~vcl~~l-~~~W~p~~~~~~il~~l~~ll~~p~--~~~~~n~~a~~ 125 (148)
.-+.+.|+++||+.||.+|...++- -.-|-.+|.||+.++ .++|+.+++++.+++++..++.... ...+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 4567789999999999999887643 345557999999999 5899999999999999999998764 3445544433
Q ss_pred HHHh--CHHHHHHHHHHHH
Q 032063 126 MCKT--DKTKYESSARSWT 142 (148)
Q Consensus 126 ~~~~--~~~~f~~~~~~~~ 142 (148)
+|.. ..+.|+..++.+.
T Consensus 92 ~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 4433 3344666665543
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.61 E-value=1.2e-07 Score=65.43 Aligned_cols=68 Identities=24% Similarity=0.653 Sum_probs=49.8
Q ss_pred CCCCcEE--EEEEEcCCCCCCCCCeeeEeccc-----ccccccCCCceecccccccCCC-ccCHHHHHHHHHHhhcC
Q 032063 44 PYAGGVF--VVTIHFPPDYPFKPPKVAFKTKV-----FHPNINSNGNICLDILKEQWSP-ALTISKVLLSICSLLTD 112 (148)
Q Consensus 44 py~g~~f--~~~i~fp~~yP~~pP~v~f~~~i-----~Hpnv~~~G~vcl~~l~~~W~p-~~~~~~il~~l~~ll~~ 112 (148)
.|.|..| .+.|-+|++||.+||.+...... -+.+|+++|+|.++.| ++|++ ..+|.+++..+...|.+
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHHHHHHHHHCCCH
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHHHHHHHHHHHhH
Confidence 5888887 56777899999999999875332 2449999999999888 88998 67899999999988864
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.42 E-value=3.8e-07 Score=63.55 Aligned_cols=96 Identities=19% Similarity=0.268 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhhC-------CCCCeeeeecCCCCceEEEEEeCCCCCCCCCcE--EEEEEEcCCCCCCCCCeeeEecc-
Q 032063 3 SKRILKELRDLQRD-------PPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGV--FVVTIHFPPDYPFKPPKVAFKTK- 72 (148)
Q Consensus 3 ~~RL~~E~~~l~~~-------~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~--f~~~i~fp~~yP~~pP~v~f~~~- 72 (148)
..||.+||..|-+. ...++.++ ++.+-+.|.+.-.- .++-.. |.+++.+|..||..||.|....-
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 47999999998651 22333333 33344555443220 012223 55666679999999999987432
Q ss_pred cccccccCCCceeccccc-ccC---CCccCHHHHH
Q 032063 73 VFHPNINSNGNICLDILK-EQW---SPALTISKVL 103 (148)
Q Consensus 73 i~Hpnv~~~G~vcl~~l~-~~W---~p~~~~~~il 103 (148)
--....|-.|+||++... .-| .|.++|...|
T Consensus 101 GKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 101 GKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 234567789999998763 445 5778887775
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00011 Score=58.25 Aligned_cols=77 Identities=22% Similarity=0.524 Sum_probs=60.2
Q ss_pred EeCCCCCCCCCcEEE--EEEEcCCCCCCCCCeeeEecc-----cccccccCCCceecccccccCCCc-cCHHHHHHHHHH
Q 032063 37 IIGPNDSPYAGGVFV--VTIHFPPDYPFKPPKVAFKTK-----VFHPNINSNGNICLDILKEQWSPA-LTISKVLLSICS 108 (148)
Q Consensus 37 i~gp~~tpy~g~~f~--~~i~fp~~yP~~pP~v~f~~~-----i~Hpnv~~~G~vcl~~l~~~W~p~-~~~~~il~~l~~ 108 (148)
+.|---++|.|.+|. +.|-+.+.||..||.+..... -.|-||+++|+|.|..| .+|.+. +.+..+++.|.+
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a 133 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIA 133 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHH
Confidence 444444678888865 566689999999999976421 14899999999999999 789855 689999999999
Q ss_pred hhcCCC
Q 032063 109 LLTDPN 114 (148)
Q Consensus 109 ll~~p~ 114 (148)
.|.++.
T Consensus 134 ~f~~~p 139 (365)
T KOG2391|consen 134 AFSEDP 139 (365)
T ss_pred HhcCCC
Confidence 887643
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=4e-05 Score=52.84 Aligned_cols=95 Identities=21% Similarity=0.407 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcE----------EEEEEEcCCCCCCCCCeeeEecc
Q 032063 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGV----------FVVTIHFPPDYPFKPPKVAFKTK 72 (148)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~----------f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
.+||.+||+.|-. +++..+++-..|.-.=..++||.|-|.+ |.+++.+|-.||..+|.+....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 5899999999875 3333444444454444557888888876 55666679999999999976321
Q ss_pred -cccccccCCCceecc-cccccCC---CccCHHHHH
Q 032063 73 -VFHPNINSNGNICLD-ILKEQWS---PALTISKVL 103 (148)
Q Consensus 73 -i~Hpnv~~~G~vcl~-~l~~~W~---p~~~~~~il 103 (148)
--.-..|..|+||+. .+..-|. |..+|...+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 123345678999994 4455664 556666553
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.26 E-value=0.004 Score=42.88 Aligned_cols=89 Identities=20% Similarity=0.359 Sum_probs=62.2
Q ss_pred CeeeeecCCCCceEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCCCce--ecccc------
Q 032063 20 SCSAGPVAEDMFHWQATIIG--PNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGNI--CLDIL------ 89 (148)
Q Consensus 20 ~~~~~~~~~n~~~w~~~i~g--p~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G~v--cl~~l------ 89 (148)
|+..+.+.+.-..|.+ |.| .+.++|.+..-.+-|.+|..||..+|.+.+..+-.... .+|.+ |-+..
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCe
Confidence 5556666677777766 555 66778999999999999999999998887765532111 12223 32211
Q ss_pred --------cccCCCcc-CHHHHHHHHHHhhc
Q 032063 90 --------KEQWSPAL-TISKVLLSICSLLT 111 (148)
Q Consensus 90 --------~~~W~p~~-~~~~il~~l~~ll~ 111 (148)
...|.|.. +|.+.|..|...|.
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 24699987 79999998887764
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.91 E-value=0.0044 Score=41.12 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEe--CCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEeccc
Q 032063 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATII--GPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKV 73 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~--gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i 73 (148)
.+.+.|+..|+.--+... ......+...+.+.+. ....+.-....+.+.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888887544333 2233455556666662 12344455668999999999999999999876553
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.76 E-value=0.023 Score=37.36 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=22.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeEecc
Q 032063 46 AGGVFVVTIHFPPDYPFKPPKVAFKTK 72 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
....+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999987654
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.89 E-value=0.094 Score=37.90 Aligned_cols=62 Identities=32% Similarity=0.516 Sum_probs=48.9
Q ss_pred EEEEEcCCCCCCCCCeeeEecccc---cccccCC-----Cceecccc-cccCCCccCHHHHHHHHHHhhcC
Q 032063 51 VVTIHFPPDYPFKPPKVAFKTKVF---HPNINSN-----GNICLDIL-KEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 51 ~~~i~fp~~yP~~pP~v~f~~~i~---Hpnv~~~-----G~vcl~~l-~~~W~p~~~~~~il~~l~~ll~~ 112 (148)
.+.|.|+.+||..+|.|.+....| +||++.. ..+|+--- -..|.+..++..+|..|..-|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 466889999999999877765433 5888865 67998443 26799999999999999988864
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=93.84 E-value=0.16 Score=40.04 Aligned_cols=85 Identities=20% Similarity=0.457 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCCCc
Q 032063 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGN 83 (148)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G~ 83 (148)
++|.+|+.++..+... .+ -.++++....+.+.. +...+.++|.++.+||.++|.+...-++
T Consensus 102 s~ll~EIe~IGW~kl~--~i-~~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~---------- 162 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLV--QI-QFDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI---------- 162 (291)
T ss_dssp -CHHHHHHHHHCGCCE--EE-EE-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS----------
T ss_pred HHHHHHHHHhccccce--EE-ecCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc----------
Confidence 4677888887765432 22 246788888888872 2367899999999999999976543332
Q ss_pred eecccccccCCC-ccCHHHHHHHHHHhhc
Q 032063 84 ICLDILKEQWSP-ALTISKVLLSICSLLT 111 (148)
Q Consensus 84 vcl~~l~~~W~p-~~~~~~il~~l~~ll~ 111 (148)
.+...|.+ ..++.+++.+.+..+.
T Consensus 163 ----~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 ----PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp -----HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ----chhhhhcccccCHHHHHHHHHHHHH
Confidence 12357888 6688888777666654
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.70 E-value=1.7 Score=32.74 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=35.1
Q ss_pred HHHHHHhhhCCCCCe-eeeecCCCCceEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCeeeE
Q 032063 7 LKELRDLQRDPPTSC-SAGPVAEDMFHWQATIIG--PNDSPYAGGVFVVTIHFPPDYPFKPPKVAF 69 (148)
Q Consensus 7 ~~E~~~l~~~~~~~~-~~~~~~~n~~~w~~~i~g--p~~tpy~g~~f~~~i~fp~~yP~~pP~v~f 69 (148)
..|+..|...-+... .+ .+.+...+.+.|.- ..+.-+.| .+.+.+.++++||..+|.+.+
T Consensus 8 e~E~EaLeSIY~de~~~i--~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 8 EEELEALESIYPDEFKHI--NSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred HHHHHHHHHhccchhhhh--hccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 456666666433323 22 23333335556651 12222333 788999999999999999944
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.02 E-value=5.5 Score=35.62 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCC-CCeeeEecc
Q 032063 5 RILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFK-PPKVAFKTK 72 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~-pP~v~f~~~ 72 (148)
-|.+|+.-|-..- ..+.++-.+-.-..-.+.+.+|-.-.-..-..++.|.||.+||.+ +|.+.|..+
T Consensus 424 nLgeE~S~Ig~k~-~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGVKI-RNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhccc-cccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3555665554322 223333222233344555656544332223357889999999995 799999644
No 38
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=79.02 E-value=3.5 Score=31.47 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=27.0
Q ss_pred ccccc---cccCCCceecccccccCCCcc-CHHHHHHHHHHhhcCCC
Q 032063 72 KVFHP---NINSNGNICLDILKEQWSPAL-TISKVLLSICSLLTDPN 114 (148)
Q Consensus 72 ~i~Hp---nv~~~G~vcl~~l~~~W~p~~-~~~~il~~l~~ll~~p~ 114 (148)
++||. ||+++|.||+.... .|.. ++.+ +....+.|.+-.
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~ 174 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSR 174 (228)
T ss_pred eeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCc
Confidence 35553 99999999997663 5554 5666 777777776543
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=76.70 E-value=4.2 Score=29.57 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=23.6
Q ss_pred ccccc---ccccCCCceecccccccCCCccCHHHHHHHHHHhhcC
Q 032063 71 TKVFH---PNINSNGNICLDILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 71 ~~i~H---pnv~~~G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~ 112 (148)
|++|| +||+.+|.||+.... .|.......+..+...+.+
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~ 131 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFN 131 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhC
Confidence 44555 499999999997642 2444334445555544443
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=76.00 E-value=8.9 Score=30.91 Aligned_cols=59 Identities=25% Similarity=0.545 Sum_probs=41.4
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCeeeEe-cccccccccCCCceecccccccCCCcc--CHHHHHHHHHH
Q 032063 44 PYAGGVFVVTIHFPPDYPFKPPKVAFK-TKVFHPNINSNGNICLDILKEQWSPAL--TISKVLLSICS 108 (148)
Q Consensus 44 py~g~~f~~~i~fp~~yP~~pP~v~f~-~~i~Hpnv~~~G~vcl~~l~~~W~p~~--~~~~il~~l~~ 108 (148)
||.|...+-.+.|...||..||-+.|. ..-|+|... . +..| .+|.+.- ++..++..|..
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHHHH
Confidence 589999999999999999999999996 334777422 1 1222 6788764 45555554443
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=55.49 E-value=19 Score=25.28 Aligned_cols=25 Identities=36% Similarity=0.673 Sum_probs=22.3
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeeeEe
Q 032063 46 AGGVFVVTIHFPPDYP-FKPPKVAFK 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP-~~pP~v~f~ 70 (148)
+.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 4588999999999999 999999884
No 42
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.81 E-value=3.7 Score=30.41 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=26.1
Q ss_pred CCceecccccccCCCccCHHHHHHHHHHhhcC
Q 032063 81 NGNICLDILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~ 112 (148)
.+.+|++++.+.|+|.+|.++.+.-++..+.+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999887766665543
No 43
>smart00340 HALZ homeobox associated leucin zipper.
Probab=54.47 E-value=11 Score=20.88 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhC
Q 032063 3 SKRILKELRDLQRD 16 (148)
Q Consensus 3 ~~RL~~E~~~l~~~ 16 (148)
-+||++|+.+|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999874
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=53.96 E-value=20 Score=26.49 Aligned_cols=25 Identities=40% Similarity=0.622 Sum_probs=22.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeEe
Q 032063 46 AGGVFVVTIHFPPDYPFKPPKVAFK 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~~pP~v~f~ 70 (148)
+.|.|.|+-.+|--||..+|.|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4688999999999999999999885
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=53.07 E-value=36 Score=27.49 Aligned_cols=27 Identities=22% Similarity=0.520 Sum_probs=22.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeEecc
Q 032063 46 AGGVFVVTIHFPPDYPFKPPKVAFKTK 72 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
.+-.|-+++.+|..||...|.++|.+.
T Consensus 304 ~~F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 304 GDFTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred CCeEEEEEEeccCCCCCcCCeEEEEee
Confidence 344588888999999999999999764
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=47.60 E-value=30 Score=24.81 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=22.0
Q ss_pred CCcEEEEEEEcCCCCC-----CCCCeeeEe
Q 032063 46 AGGVFVVTIHFPPDYP-----FKPPKVAFK 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP-----~~pP~v~f~ 70 (148)
+.|.|.|+-.+|--|| ..||.|.|.
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 4588999999999999 799999885
No 47
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=47.10 E-value=22 Score=26.72 Aligned_cols=54 Identities=28% Similarity=0.543 Sum_probs=42.7
Q ss_pred CCCCeeeEeccccccccc--CCCceecccccccCC--CccCHHHHHHHHHHhhcCCCC
Q 032063 62 FKPPKVAFKTKVFHPNIN--SNGNICLDILKEQWS--PALTISKVLLSICSLLTDPNP 115 (148)
Q Consensus 62 ~~pP~v~f~~~i~Hpnv~--~~G~vcl~~l~~~W~--p~~~~~~il~~l~~ll~~p~~ 115 (148)
..||.|.|-.+.|...|+ +-|-|--++...+|- |+.++.+-|..|..++-.|+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~e 224 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTE 224 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcc
Confidence 379999999999999998 566655566666664 788899999999998887753
No 48
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=45.21 E-value=70 Score=19.55 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=32.3
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 032063 105 SICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146 (148)
Q Consensus 105 ~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++..-++...+.++|.....+--+.|...+-..+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665666778999999998888889888877777665
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=40.41 E-value=36 Score=27.25 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=22.6
Q ss_pred CcEEEEEEEcCCCCCCCCCeeeEecc
Q 032063 47 GGVFVVTIHFPPDYPFKPPKVAFKTK 72 (148)
Q Consensus 47 g~~f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
..++.+.+..+..||...|+|+...+
T Consensus 44 yvcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 44 YVCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred eEEEEEEEecCCCCCCcCCceEecCC
Confidence 35688999999999999999998765
No 50
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=38.53 E-value=1.2e+02 Score=22.90 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCC-------------------C-
Q 032063 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDY-------------------P- 61 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~y-------------------P- 61 (148)
+..||.+.++++++.. .+...-|.+.+. |...---|| |.+.++|.++= -
T Consensus 10 ~~eR~~e~~~~~k~~L---------~~a~~GW~~~yy-p~~~~~~GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~ 78 (235)
T PF14135_consen 10 PAERINEALAEYKKIL---------TSAPNGWKLEYY-PKTDQSYGG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRL 78 (235)
T ss_pred HHHHHHHHHHHHHHHH---------hcCCCceEEEEE-CCCCccCCc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEE
Confidence 4578888777776621 122222666666 333221233 77777776443 1
Q ss_pred --CCCCeeeEec--ccccccccCCC
Q 032063 62 --FKPPKVAFKT--KVFHPNINSNG 82 (148)
Q Consensus 62 --~~pP~v~f~~--~i~Hpnv~~~G 82 (148)
..-|.+.|.| ++.|-..++++
T Consensus 79 ~~~~gp~LsFdTyN~~iH~~s~p~~ 103 (235)
T PF14135_consen 79 KQDQGPVLSFDTYNEYIHYFSDPSN 103 (235)
T ss_pred ecCCceEEEEEeCCceEEEccCCCc
Confidence 2337777765 35676655533
No 51
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=38.23 E-value=74 Score=20.66 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeeeEecc
Q 032063 45 YAGGVFVVTIHFPPDYPFKPPKVAFKTK 72 (148)
Q Consensus 45 y~g~~f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
-+|..+.|...-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46788889888899999 489998765
No 52
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.90 E-value=63 Score=23.90 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCee
Q 032063 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKV 67 (148)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v 67 (148)
..+|+++|++.+.++--..++..|.-+-.-.+.+.++-..++ ..|.++-.+-|.+
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT-----------EVPEKWDESGPKL 174 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc-----------cCCcchhcCCCeE
Confidence 368999999999998777788888877778888888755544 4555555555543
No 53
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=37.00 E-value=99 Score=18.84 Aligned_cols=42 Identities=14% Similarity=0.323 Sum_probs=29.0
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 032063 105 SICSLLTDPNPDDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146 (148)
Q Consensus 105 ~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++..-++...+.+++..+..+=-+.|...+-..+.+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777888889999998888888888888777776655
No 54
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=36.92 E-value=90 Score=26.24 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.7
Q ss_pred EEEEEEcCCCCCC
Q 032063 50 FVVTIHFPPDYPF 62 (148)
Q Consensus 50 f~~~i~fp~~yP~ 62 (148)
..+.++||++|+.
T Consensus 211 k~i~vtFP~dy~a 223 (441)
T COG0544 211 KDIKVTFPEDYHA 223 (441)
T ss_pred eEEEEEcccccch
Confidence 6688999999998
No 55
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=35.98 E-value=53 Score=24.38 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=20.9
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeeeEe
Q 032063 46 AGGVFVVTIHFPPDYPF-----KPPKVAFK 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~-----~pP~v~f~ 70 (148)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 45779999999999998 88887663
No 56
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=33.31 E-value=63 Score=23.81 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.3
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeeeE
Q 032063 47 GGVFVVTIHFPPDYPF-----KPPKVAF 69 (148)
Q Consensus 47 g~~f~~~i~fp~~yP~-----~pP~v~f 69 (148)
.|.|.|+-.+|--||. .||.|.|
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~ 119 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINV 119 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEE
Confidence 4789999999999995 7777765
No 57
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=33.09 E-value=95 Score=25.56 Aligned_cols=30 Identities=33% Similarity=0.599 Sum_probs=24.6
Q ss_pred CCCceeccccc---ccCCCcc--CHHHHHHHHHHh
Q 032063 80 SNGNICLDILK---EQWSPAL--TISKVLLSICSL 109 (148)
Q Consensus 80 ~~G~vcl~~l~---~~W~p~~--~~~~il~~l~~l 109 (148)
.+|+||.++=- +...|.. +|.+++..|.++
T Consensus 335 ~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 335 KTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred CCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 49999997752 6788876 899999999888
No 58
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=31.70 E-value=71 Score=25.01 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=26.2
Q ss_pred CCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 032063 117 DPLVPEIAHMCKTDKTKYESSARSWTQKYA 146 (148)
Q Consensus 117 ~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
...+.+++..|..+++.|.+.+.+.+++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 447889999999999999999999988764
No 59
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=29.98 E-value=42 Score=19.95 Aligned_cols=19 Identities=11% Similarity=0.419 Sum_probs=11.8
Q ss_pred ccCCCccCHHHHHHHHHHh
Q 032063 91 EQWSPALTISKVLLSICSL 109 (148)
Q Consensus 91 ~~W~p~~~~~~il~~l~~l 109 (148)
-+|.|.++|.+++...-..
T Consensus 36 LgW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp C----SSSHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHH
Confidence 3799999999999876553
No 60
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=29.11 E-value=1.2e+02 Score=19.31 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=18.6
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHH
Q 032063 122 EIAHMCKTDKTKYESSARSWTQK 144 (148)
Q Consensus 122 ~a~~~~~~~~~~f~~~~~~~~~~ 144 (148)
+...++++||++|.+..++..++
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHH
Confidence 56678899999999988877664
No 61
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=26.81 E-value=1.7e+02 Score=18.49 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=28.1
Q ss_pred ceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccc
Q 032063 31 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVF 74 (148)
Q Consensus 31 ~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~ 74 (148)
..|.+-+.|+.+.....-+=++...+.+.|+. |...+..+-|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 47999999877766666677788888888776 6666655543
No 62
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=25.56 E-value=2.6e+02 Score=20.13 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=44.1
Q ss_pred HHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEe---cccccccccCCC
Q 032063 6 ILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFK---TKVFHPNINSNG 82 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~---~~i~Hpnv~~~G 82 (148)
+..++++....-+.|+++....++ +++ .|-+-.--..++ .+||.|-+. +..-|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCC
Confidence 456788988888889887643221 111 122222112222 369999884 345788999999
Q ss_pred ceecccccc
Q 032063 83 NICLDILKE 91 (148)
Q Consensus 83 ~vcl~~l~~ 91 (148)
.+|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999953
No 63
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=24.69 E-value=1.9e+02 Score=23.96 Aligned_cols=102 Identities=12% Similarity=0.228 Sum_probs=56.4
Q ss_pred HHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEE--------EEEEcCCCCCCCCCeeeEeccccccc
Q 032063 6 ILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFV--------VTIHFPPDYPFKPPKVAFKTKVFHPN 77 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~--------~~i~fp~~yP~~pP~v~f~~~i~Hpn 77 (148)
+..|.++|...+|..-.+..... -...+.|. |... +..+.++ +.=.|...|+..||-++....+.|--
T Consensus 250 ne~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~-vsRA-fGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~Hr 325 (390)
T KOG0700|consen 250 NEDEVRRIRSEHPDDPHIVVNKH--WRVKGILQ-VSRA-FGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHK 325 (390)
T ss_pred cHHHHHHHHHhCCCCcceEeecc--ceeeEEEE-eeee-ccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEE
Confidence 56788888888776555544443 12233443 2221 3333332 11168888999999999998888777
Q ss_pred ccCCCceecccccccCCCccCHHHHHHHHHHhhcC
Q 032063 78 INSNGNICLDILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 78 v~~~G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~ 112 (148)
+.++-++=+=....-|. -+|=++++.-+...+..
T Consensus 326 L~p~DkFLIlASDGLwE-~lsNeeaV~lV~~~i~~ 359 (390)
T KOG0700|consen 326 LTPNDKFLILASDGLWE-YLSNEEAVSLVHEFISG 359 (390)
T ss_pred cCCCCeEEEEeccchhh-hcChHHHHHHHHHhhcc
Confidence 77655533211112233 12334555555565553
No 64
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=24.51 E-value=1.2e+02 Score=23.85 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=26.5
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCC--CeeeEecc
Q 032063 42 DSPYAGGVFVVTIHFPPDYPFKP--PKVAFKTK 72 (148)
Q Consensus 42 ~tpy~g~~f~~~i~fp~~yP~~p--P~v~f~~~ 72 (148)
.+++.|..|++.+..|++||-.- |.|.|+..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDG 47 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLDG 47 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEecc
Confidence 45678999999999999999988 99998753
No 65
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=24.35 E-value=1.8e+02 Score=22.66 Aligned_cols=46 Identities=24% Similarity=0.484 Sum_probs=31.2
Q ss_pred CCCceEEEEEeCCCCCCCCCcE----EEEEEEcC-----CCCCCCCCeeeEecccc
Q 032063 28 EDMFHWQATIIGPNDSPYAGGV----FVVTIHFP-----PDYPFKPPKVAFKTKVF 74 (148)
Q Consensus 28 ~n~~~w~~~i~gp~~tpy~g~~----f~~~i~fp-----~~yP~~pP~v~f~~~i~ 74 (148)
.|..-|.+.... .+|.-..|+ |+..+++. .+-||+||+|..+++-|
T Consensus 100 KDp~PWkl~YrV-~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRV-EDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEe-ecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 466678877763 444443333 55666654 68999999999998754
No 66
>PF00718 Polyoma_coat: Polyomavirus coat protein This family is a subset of the SCOP family; InterPro: IPR000662 This entry represents the major capsid protein VP1 (viral protein 1) from Polyomaviruses, such as Murine polyomavirus (strain P16 small-plaque) (MPyV) []. Polyomaviruses are dsDNA viruses with no RNA stage in their life cycle. The virus capsid is composed of 72 icosahedral units, each of which is composed of five copies of VP1. The virus attaches to the cell surface by recognition of oligosaccharides terminating in alpha(2,3)-linked sialic acid. The capsid protein VP1 forms a pentamer. The complete capsid is composed of 72 VP1 pentamers, with a minor capsid protein, VP2 or VP3, inserted into the centre of each pentamer like a hairpin. This structure restricts the exposure of internal proteins during viral entry. Polyomavirus coat assembly is rigorously controlled by chaperone-mediated assembly. During viral infection, the heat shock chaperone hsc70 binds VP1 and co-localises it in the nucleus, thereby regulating capsid assembly [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 3NXG_C 3NXD_D 1CN3_C 1SID_D 1VPS_B 1SIE_A 1VPN_A 3S7V_F 3S7X_A 3BWQ_C ....
Probab=24.24 E-value=1.7e+02 Score=23.21 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=21.1
Q ss_pred CCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCCCc--eec
Q 032063 43 SPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGN--ICL 86 (148)
Q Consensus 43 tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G~--vcl 86 (148)
+.=|..+|-.+++=... .||.+.|....-.+.+|+||. +|.
T Consensus 192 skNENtRYFG~~tGG~~---TPPVl~ftNt~TTvLLDENGVGpLCk 234 (297)
T PF00718_consen 192 SKNENTRYFGSYTGGAN---TPPVLQFTNTVTTVLLDENGVGPLCK 234 (297)
T ss_dssp TSSTTEEEEEEEE-SSS------EEEEESSEEEE---TTS--EEEC
T ss_pred CcCcCceeeEeecCCCC---CCCeEEeccceeEEEEccCCcccccc
Confidence 33444455555544433 699999988777888888764 665
No 67
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=24.20 E-value=78 Score=27.60 Aligned_cols=29 Identities=34% Similarity=0.796 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEEEcCCCCCC---CCCeeeEecc
Q 032063 43 SPYAGGVFVVTIHFPPDYPF---KPPKVAFKTK 72 (148)
Q Consensus 43 tpy~g~~f~~~i~fp~~yP~---~pP~v~f~~~ 72 (148)
+||.=|+|-+. .+|.+||+ +-|-++|+|+
T Consensus 248 GpY~WgryDll-vlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDLL-VLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceEE-EecCCCCcccccCcceeeecc
Confidence 57888888874 67999998 6799999987
No 68
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=23.56 E-value=1.1e+02 Score=24.21 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=20.5
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeeEe
Q 032063 46 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 70 (148)
+.|.|.|+-.+|.-|| ..||.|.|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 4578999999999997 567888774
No 69
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=23.28 E-value=30 Score=17.98 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=9.2
Q ss_pred cccccccCCCc-eeccc
Q 032063 73 VFHPNINSNGN-ICLDI 88 (148)
Q Consensus 73 i~Hpnv~~~G~-vcl~~ 88 (148)
.|||.++.+|+ .|...
T Consensus 2 ~yHPg~~~~g~W~CC~q 18 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQ 18 (32)
T ss_dssp EE-SS-EETTCESSSS-
T ss_pred CcCCCcccCCcCcCCCC
Confidence 48999998776 66543
No 70
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=23.06 E-value=60 Score=19.39 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhh
Q 032063 4 KRILKELRDLQR 15 (148)
Q Consensus 4 ~RL~~E~~~l~~ 15 (148)
+||++|+.++.-
T Consensus 37 ~rL~kEL~d~D~ 48 (59)
T PF12065_consen 37 QRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHccc
Confidence 689999988864
No 71
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=22.59 E-value=35 Score=23.01 Aligned_cols=20 Identities=35% Similarity=0.767 Sum_probs=15.3
Q ss_pred CCCceecccccccCCCccCH
Q 032063 80 SNGNICLDILKEQWSPALTI 99 (148)
Q Consensus 80 ~~G~vcl~~l~~~W~p~~~~ 99 (148)
..|.+|.-.+..+|+|.+++
T Consensus 49 GGg~~CC~~~p~~W~pg~tv 68 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTV 68 (118)
T ss_pred CCceEEEEEcCCCCCCCCEE
Confidence 35566877788999999874
No 72
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=22.57 E-value=2.6e+02 Score=18.98 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhCCCCCeeeeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCC
Q 032063 5 RILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPD 59 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~ 59 (148)
...+++.+.++....|..+...-++ ....+.+.-+.+.|..+....+.+..|.+
T Consensus 44 ~y~~~i~~~~~a~~lg~~~~~~~~~-~~~~i~~~d~~g~~~~~~~~~l~l~rp~~ 97 (146)
T PF05751_consen 44 AYNQDIDRERAAEALGWKAELTIDD-NSLTIRLTDPNGAPVSGAKLTLSLYRPTD 97 (146)
T ss_pred hhhhhhHHHHHHHhcCccceeeecC-CeEEEEEEcCCCCcCcCceEEEEEECCCC
Confidence 3455555555555555555433322 44444554466777777777777776654
No 73
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=22.31 E-value=1.6e+02 Score=25.88 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=43.3
Q ss_pred HHHHHHHhhhCCCCCeeeeec----CCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeEecccccccccCC
Q 032063 6 ILKELRDLQRDPPTSCSAGPV----AEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN 81 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~----~~n~~~w~~~i~gp~~tpy~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~ 81 (148)
|+.|+..|.. .+.|.++ ++|-...+|+|. .+.-| .+++..|.+||...
T Consensus 624 lqgElarLD~----kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq~----------------- 675 (742)
T KOG4274|consen 624 LQGELARLDA----KFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQN----------------- 675 (742)
T ss_pred HHHHHHhhcc----ceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeeccccccccc-----------------
Confidence 5667766654 2333333 245444555554 44444 48888899998854
Q ss_pred CceecccccccCCCccCHHHHHHHHHHhhcCCCCCC
Q 032063 82 GNICLDILKEQWSPALTISKVLLSICSLLTDPNPDD 117 (148)
Q Consensus 82 G~vcl~~l~~~W~p~~~~~~il~~l~~ll~~p~~~~ 117 (148)
+|.+-- -.+..+.-+.++=.++++-|..|...+
T Consensus 676 --~~vdr~-~~y~a~pflq~vq~s~~~RlsrP~~~S 708 (742)
T KOG4274|consen 676 --VTVDRA-VIYLAAPFLQDVQNSVYERLSRPGLSS 708 (742)
T ss_pred --hhhhhH-HHhhhcHHHHHHHHHHHHHHccCCcch
Confidence 233211 112333445566666776666665543
No 74
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=22.29 E-value=2e+02 Score=18.06 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=24.2
Q ss_pred CCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 032063 116 DDPLVPEIAHMCKTDKTKYESSARSWTQKYA 146 (148)
Q Consensus 116 ~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
..|-+.+|...|.+-.++..+..+++.++|.
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567888999888877777788888877764
No 75
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=22.03 E-value=85 Score=24.31 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=18.6
Q ss_pred HHHHh-CHHHHHHHHHHHHHHhhC
Q 032063 125 HMCKT-DKTKYESSARSWTQKYAM 147 (148)
Q Consensus 125 ~~~~~-~~~~f~~~~~~~~~~~a~ 147 (148)
+.|.+ +++.|++++++++++.|+
T Consensus 215 ~~Y~~~E~~lF~~~~~eHA~~lA~ 238 (251)
T PF14798_consen 215 SIYIEKEQELFDETAKEHARKLAE 238 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45644 778899999999999884
No 76
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=21.81 E-value=1.3e+02 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=20.8
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeeEe
Q 032063 46 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP------------------~~pP~v~f~ 70 (148)
+.|.|.|+-..|.-|| ..||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 4688999999999999 478888774
No 77
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=21.77 E-value=1.4e+02 Score=17.59 Aligned_cols=21 Identities=5% Similarity=0.205 Sum_probs=18.1
Q ss_pred ccHHHHHHHHhCHHHHHHHHH
Q 032063 119 LVPEIAHMCKTDKTKYESSAR 139 (148)
Q Consensus 119 ~n~~a~~~~~~~~~~f~~~~~ 139 (148)
.|++.+.+..+|+++|.+...
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHCHHHHHHHHc
Confidence 688999999999999988754
No 78
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.68 E-value=1e+02 Score=21.51 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=14.8
Q ss_pred CCCCceEEEEEeCCCCCCC
Q 032063 27 AEDMFHWQATIIGPNDSPY 45 (148)
Q Consensus 27 ~~n~~~w~~~i~gp~~tpy 45 (148)
..|...|.|++.|++|++.
T Consensus 44 PGd~~~ytVtV~G~dGs~~ 62 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIR 62 (139)
T ss_pred CCCCcceEEEEECCCCcce
Confidence 4577788899999888765
No 79
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=20.43 E-value=1.5e+02 Score=22.59 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=20.8
Q ss_pred CCcEEEEEEEcCCCCCC-------CCCeeeEe
Q 032063 46 AGGVFVVTIHFPPDYPF-------KPPKVAFK 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~-------~pP~v~f~ 70 (148)
+.|.|.|+-..|--||. .||.|.|.
T Consensus 121 ~~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 121 DDGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 35889999999999975 78888773
No 80
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=20.37 E-value=1.9e+02 Score=18.39 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=14.6
Q ss_pred EEEcCCCCCCCCCeeeEec
Q 032063 53 TIHFPPDYPFKPPKVAFKT 71 (148)
Q Consensus 53 ~i~fp~~yP~~pP~v~f~~ 71 (148)
-+.||+.||-+--.+-..+
T Consensus 6 ImIlPdKYPCSIsSiLI~s 24 (89)
T PF07380_consen 6 IMILPDKYPCSISSILITS 24 (89)
T ss_pred EEEcCCCCCceeeEEEEec
Confidence 3679999999887776544
No 81
>KOG4690 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.19 E-value=1.9e+02 Score=20.51 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=27.7
Q ss_pred CCCCCCCccHHHH-------HHHHhCHHHHHHHHHHHHHHhhC
Q 032063 112 DPNPDDPLVPEIA-------HMCKTDKTKYESSARSWTQKYAM 147 (148)
Q Consensus 112 ~p~~~~~~n~~a~-------~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
-|.|+.|.|.=.. ..|..+-+.|++.-+.-++++|+
T Consensus 77 PPkPEEP~nCC~SGCv~CVWDVY~DdLEdYN~~r~~a~~~i~~ 119 (165)
T KOG4690|consen 77 PPKPEEPDNCCMSGCVNCVWDVYSDDLEDYNHRRKEAAEKIAG 119 (165)
T ss_pred CCCCCCcccchhhccceeehHhhHHHHHHHHHHHHHHHHHhcc
Confidence 4566777665332 57899999999999999998875
No 82
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=20.15 E-value=1.5e+02 Score=22.53 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=20.6
Q ss_pred CCcEEEEEEEcCCCCCC-------CCCeeeE
Q 032063 46 AGGVFVVTIHFPPDYPF-------KPPKVAF 69 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~-------~pP~v~f 69 (148)
+.|.|.|+-.+|--||. .||.|.|
T Consensus 116 ~~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~ 146 (220)
T TIGR02422 116 SDGYYRFRTIKPGPYPWGNHHNAWRPAHIHF 146 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEE
Confidence 36889999999999986 8888877
No 83
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=20.09 E-value=1.4e+02 Score=23.53 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.0
Q ss_pred CCcEEEEEEEcCCCCC
Q 032063 46 AGGVFVVTIHFPPDYP 61 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP 61 (148)
+.|.|.|+-..|.-||
T Consensus 175 ~~G~y~F~TI~P~~Yp 190 (282)
T cd03460 175 ADGRYRFRSIMPSGYG 190 (282)
T ss_pred CCCCEEEEEECCCCCc
Confidence 4588999999999997
Done!