Query 032064
Match_columns 148
No_of_seqs 122 out of 1053
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02931 nucleoside diphosphat 100.0 6.1E-42 1.3E-46 262.8 14.4 139 8-146 9-147 (177)
2 PRK14542 nucleoside diphosphat 100.0 1E-40 2.2E-45 247.2 12.5 116 28-146 1-116 (137)
3 cd04415 NDPk7A Nucleoside diph 100.0 1E-40 2.3E-45 245.4 12.2 116 29-146 1-116 (131)
4 cd04412 NDPk7B Nucleoside diph 100.0 4.6E-40 9.9E-45 242.6 12.9 118 29-146 1-119 (134)
5 PRK14541 nucleoside diphosphat 100.0 5.2E-40 1.1E-44 244.1 12.5 116 28-146 1-116 (140)
6 PRK14545 nucleoside diphosphat 100.0 5.9E-40 1.3E-44 243.6 12.3 117 27-146 2-118 (139)
7 cd04418 NDPk5 Nucleoside dipho 100.0 8.5E-40 1.8E-44 240.8 12.2 116 29-146 1-116 (132)
8 PRK14540 nucleoside diphosphat 100.0 9.5E-40 2.1E-44 241.1 12.4 116 28-146 2-117 (134)
9 PTZ00093 nucleoside diphosphat 100.0 1.3E-39 2.8E-44 244.3 12.4 116 28-146 2-117 (149)
10 cd00595 NDPk Nucleoside diphos 100.0 1.8E-39 3.8E-44 238.9 12.3 118 29-146 1-118 (133)
11 cd04414 NDPk6 Nucleoside dipho 100.0 2.1E-39 4.6E-44 239.5 12.6 118 29-146 1-119 (135)
12 cd04416 NDPk_TX NDP kinase dom 100.0 2.3E-39 5E-44 238.2 11.6 117 29-146 1-117 (132)
13 COG0105 Ndk Nucleoside diphosp 100.0 2.8E-39 6.1E-44 235.2 10.8 114 28-144 2-115 (135)
14 cd04413 NDPk_I Nucleoside diph 100.0 7.6E-39 1.6E-43 235.0 11.7 115 29-146 1-115 (130)
15 PRK00668 ndk mulitfunctional n 100.0 7.5E-39 1.6E-43 236.1 11.7 116 28-146 1-116 (134)
16 PLN02619 nucleoside-diphosphat 100.0 2.9E-38 6.4E-43 250.7 11.1 119 25-146 85-203 (238)
17 PF00334 NDK: Nucleoside dipho 100.0 5.7E-38 1.2E-42 231.0 10.3 115 29-146 1-115 (135)
18 PRK14543 nucleoside diphosphat 100.0 1.4E-37 3.1E-42 237.1 11.5 118 26-146 3-135 (169)
19 smart00562 NDK These are enzym 100.0 3.5E-37 7.5E-42 226.9 12.2 115 29-146 1-115 (135)
20 PRK14544 nucleoside diphosphat 100.0 2.5E-35 5.3E-40 227.2 12.2 116 27-145 2-160 (183)
21 KOG0888 Nucleoside diphosphate 100.0 2.6E-35 5.7E-40 221.3 7.0 119 28-146 5-123 (156)
22 PF14454 Prok_Ub: Prokaryotic 59.5 7.7 0.00017 25.2 1.9 28 66-98 23-50 (65)
23 TIGR03738 PRTRC_C PRTRC system 57.5 5.3 0.00011 26.1 0.9 28 66-98 22-49 (66)
24 COG1799 Uncharacterized protei 50.9 44 0.00096 25.6 5.1 46 27-76 71-116 (167)
25 KOG0328 Predicted ATP-dependen 43.4 98 0.0021 26.4 6.4 95 43-140 151-266 (400)
26 TIGR00640 acid_CoA_mut_C methy 39.1 89 0.0019 22.6 5.1 39 32-72 7-45 (132)
27 PF07576 BRAP2: BRCA1-associat 38.8 26 0.00057 24.8 2.1 17 68-84 63-79 (110)
28 PF04472 DUF552: Protein of un 37.0 61 0.0013 20.8 3.5 42 33-78 2-43 (73)
29 COG4096 HsdR Type I site-speci 33.8 3.8E+02 0.0082 25.9 9.2 120 24-147 422-552 (875)
30 COG1504 Uncharacterized conser 32.2 89 0.0019 22.6 3.9 53 65-117 47-110 (121)
31 PRK12483 threonine dehydratase 31.4 1.5E+02 0.0032 26.6 6.1 55 46-117 400-463 (521)
32 cd00384 ALAD_PBGS Porphobilino 28.1 68 0.0015 27.1 3.2 46 34-81 153-198 (314)
33 cd00550 ArsA_ATPase Oxyanion-t 25.7 1.5E+02 0.0032 23.6 4.7 34 29-62 161-194 (254)
34 KOG2456 Aldehyde dehydrogenase 25.2 90 0.0019 27.6 3.5 70 32-105 134-214 (477)
35 PF04339 DUF482: Protein of un 25.1 1.1E+02 0.0023 26.4 3.9 53 50-102 193-257 (370)
36 PRK15068 tRNA mo(5)U34 methylt 24.8 97 0.0021 25.7 3.6 64 45-135 255-318 (322)
37 PRK13384 delta-aminolevulinic 24.8 93 0.002 26.4 3.4 46 34-81 163-208 (322)
38 cd06335 PBP1_ABC_ligand_bindin 24.5 3.8E+02 0.0082 21.6 7.3 72 30-114 139-213 (347)
39 PF06130 PduL: Propanediol uti 24.4 50 0.0011 21.7 1.5 20 58-77 4-23 (71)
40 PRK09283 delta-aminolevulinic 24.2 82 0.0018 26.7 3.0 89 34-124 161-295 (323)
41 PF13673 Acetyltransf_10: Acet 23.4 2.2E+02 0.0048 18.5 5.8 45 30-78 67-114 (117)
42 TIGR01124 ilvA_2Cterm threonin 23.2 1.3E+02 0.0029 26.7 4.3 37 83-119 399-444 (499)
43 PF15323 Ashwin: Developmental 22.8 76 0.0016 25.3 2.4 43 33-80 3-45 (214)
44 COG1724 Predicted RNA binding 22.1 1.2E+02 0.0026 19.8 2.8 20 45-64 9-28 (66)
45 cd04903 ACT_LSD C-terminal ACT 20.8 1.9E+02 0.0042 16.9 4.1 32 32-65 2-33 (71)
No 1
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=6.1e-42 Score=262.85 Aligned_cols=139 Identities=65% Similarity=0.939 Sum_probs=133.0
Q ss_pred HHHHHHHhcCCcCCCCCcccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHH
Q 032064 8 LFILACISSPCRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87 (148)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~ 87 (148)
+|++-..+-+-++++...+..|+||+|||||++.++++|+|+++|+++||+|+++||++||+++|++||.+|++++||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~ 88 (177)
T PLN02931 9 LFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPS 88 (177)
T ss_pred HHHHHHcccccccCCCCCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHH
Confidence 56677778888899999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCEEEEEEccccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 88 lv~~m~sGpvval~l~g~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
|+++|+|||+++|+|.|+|||++||+++||+||.+|+..+|+|||++||.+..+|+++-
T Consensus 89 Lv~~mtSGP~vam~L~g~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHg 147 (177)
T PLN02931 89 LVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHG 147 (177)
T ss_pred HHHHHHhCCeEEEEEecCCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceEC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 2
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1e-40 Score=247.16 Aligned_cols=116 Identities=37% Similarity=0.598 Sum_probs=112.6
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 48999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
|++||+++||+||..|+ |+|||+.||.+..+|+++-
T Consensus 81 v~~~R~l~Gpt~p~~A~---p~siR~~fg~~~~~N~vH~ 116 (137)
T PRK14542 81 VLHWREVIGATDPKEAA---AGTIRALYAESKEANAVHG 116 (137)
T ss_pred HHHHHHHhCCCCchhCC---CCCchHHhcCcccceeEEC
Confidence 99999999999999997 9999999999999999863
No 3
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1e-40 Score=245.38 Aligned_cols=116 Identities=39% Similarity=0.682 Sum_probs=112.9
Q ss_pred eeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccHH
Q 032064 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~naV 108 (148)
|+||+|||||++.+ +|+||++|+++||+|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|||
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 68999999999974 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 109 TDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 109 ~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
++||+++||+||..|+...|+|||+.||.+..+|+++-
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~ 116 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHG 116 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEEC
Confidence 99999999999999999999999999999999999874
No 4
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=4.6e-40 Score=242.64 Aligned_cols=118 Identities=25% Similarity=0.359 Sum_probs=115.2
Q ss_pred eeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCC-CcHHHHHHhhhcCCEEEEEEccccH
Q 032064 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSR-SFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~-~~f~~lv~~m~sGpvval~l~g~na 107 (148)
++||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|+++ +||++|+++|+|||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 589999999999988899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
|++||+++||+||..|+...|+|||+.||++.++|+++-
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~ 119 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHC 119 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEc
Confidence 999999999999999999999999999999999999974
No 5
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.2e-40 Score=244.14 Aligned_cols=116 Identities=34% Similarity=0.555 Sum_probs=112.6
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 48999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
|++||+++||+||..|+ |+|||+.||++..+|++..
T Consensus 81 v~~~R~l~Gpt~p~~A~---p~siR~~yg~~~~~N~vHg 116 (140)
T PRK14541 81 VADFRTLIGATDPAEAA---EGTVRKLYADSKGENIVHG 116 (140)
T ss_pred HHHHHHHhCCCCchhCC---CCCchHHhcccccceeEEC
Confidence 99999999999999997 9999999999999999864
No 6
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.9e-40 Score=243.56 Aligned_cols=117 Identities=33% Similarity=0.545 Sum_probs=113.1
Q ss_pred cceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcccc
Q 032064 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (148)
Q Consensus 27 ~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~n 106 (148)
..|+||+|||||++.++++|+||++|+++||+|+++|+++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|
T Consensus 2 ~~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~n 81 (139)
T PRK14545 2 AGNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKEN 81 (139)
T ss_pred CcceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCC
Confidence 46899999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 107 AITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 107 aV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
||++||+++||+||.+|+ |+|||+.||++..+|+++-
T Consensus 82 av~~~R~l~Gpt~p~~A~---p~siR~~yg~~~~~N~vH~ 118 (139)
T PRK14545 82 AVEDFRTLIGATNPADAA---EGTIRKKYAKSIGENAVHG 118 (139)
T ss_pred HHHHHHHHhCCCCcccCC---CCChhHHhcccccceeEEC
Confidence 999999999999999996 9999999999999999863
No 7
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=8.5e-40 Score=240.76 Aligned_cols=116 Identities=43% Similarity=0.733 Sum_probs=112.9
Q ss_pred eeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccHH
Q 032064 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~naV 108 (148)
|+||+|||||++.+ +|+||++|+++||+|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 68999999999965 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 109 TDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 109 ~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
++||+++||+||..|+...|+|||+.||.+..+|+++.
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~ 116 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHG 116 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEEC
Confidence 99999999999999999999999999999999999874
No 8
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=9.5e-40 Score=241.07 Aligned_cols=116 Identities=32% Similarity=0.552 Sum_probs=112.6
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|++.|+||
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 58999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
|++||+++||+||..|. |+|||+.||.+..+|+++-
T Consensus 82 v~~~R~l~Gpt~p~~a~---p~siR~~fg~~~~~N~vH~ 117 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAE---PGTIRGDFGLYTPANIIHA 117 (134)
T ss_pred HHHHHHHhCCCCcccCC---CCcchhhhcccccceeEEC
Confidence 99999999999999885 9999999999999999874
No 9
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=1.3e-39 Score=244.26 Aligned_cols=116 Identities=28% Similarity=0.503 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|++.|+||
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 58999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
|++||+++||+||.+|. |+|||+.||++..+|++..
T Consensus 82 v~~~R~l~Gpt~p~~a~---p~siR~~fg~~~~~NavH~ 117 (149)
T PTZ00093 82 VKQGRKLLGATNPLESA---PGTIRGDFCVDVGRNVIHG 117 (149)
T ss_pred HHHHHHHhCCCCccccC---CCcchhhhccccccceeec
Confidence 99999999999999875 9999999999999999864
No 10
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=1.8e-39 Score=238.91 Aligned_cols=118 Identities=38% Similarity=0.644 Sum_probs=115.0
Q ss_pred eeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccHH
Q 032064 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~naV 108 (148)
|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|++++||++++++|+|||+++|+|.|+|||
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 68999999999988789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 109 TDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 109 ~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
++||+++||+||..|+...|+|||+.||.+..+|+++.
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~ 118 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHG 118 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEEC
Confidence 99999999999999999999999999999999999864
No 11
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=2.1e-39 Score=239.48 Aligned_cols=118 Identities=38% Similarity=0.669 Sum_probs=112.5
Q ss_pred eeEEEEEcCCcccCcch-hHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 29 EKTLAMIKPDGLSGNYT-DEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~-g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
|+||+|||||++.++++ |.|++.|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 68999999999987766 66777788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
|++||+++||+||..|+...|+|||++||++..+|+++-
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~ 119 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHG 119 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEEC
Confidence 999999999999999999999999999999999999874
No 12
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=2.3e-39 Score=238.21 Aligned_cols=117 Identities=42% Similarity=0.678 Sum_probs=113.7
Q ss_pred eeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccHH
Q 032064 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~naV 108 (148)
|+||+|||||++.+ ++|+|+++|+++||.|+++|+++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 68999999999976 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 109 TDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 109 ~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
++||+++||+||..|+...|+|||+.||.+..+|+++-
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~ 117 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHG 117 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEEC
Confidence 99999999999999999999999999999999999864
No 13
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.8e-39 Score=235.22 Aligned_cols=114 Identities=37% Similarity=0.573 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
.|+||+|||||+++++++|+|+++++++||+|+.+||+++++++|++||.+|+++|||++|++||+|||+++++|+|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCccccee
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLE 144 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~ 144 (148)
|+.+|+++|+|||..|. |+|||+.||.+...|++
T Consensus 82 i~~~R~l~GaTnp~~A~---pGTIRgdfa~~~~~N~v 115 (135)
T COG0105 82 ISVVRKLMGATNPANAA---PGTIRGDFALSVGENVV 115 (135)
T ss_pred HHHHHHHHCCCCcccCC---CCeEeeehhcccCcceE
Confidence 99999999999999998 99999999999999986
No 14
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=7.6e-39 Score=234.99 Aligned_cols=115 Identities=37% Similarity=0.578 Sum_probs=111.1
Q ss_pred eeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccHH
Q 032064 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~naV 108 (148)
|+||+|||||++.++++|+||++|.++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|++.|+|||
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 109 TDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 109 ~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
++||+++||+||+.+. |+|||++||++..+|++..
T Consensus 81 ~~~r~l~Gp~~~~~a~---p~slR~~~G~~~~~NavH~ 115 (130)
T cd04413 81 KTVRKLMGATNPADAA---PGTIRGDFALSIGRNIVHG 115 (130)
T ss_pred HHHHHHhCCCCccccC---CCCchhhhcccccccceEC
Confidence 9999999999999774 9999999999999999863
No 15
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=7.5e-39 Score=236.10 Aligned_cols=116 Identities=34% Similarity=0.537 Sum_probs=111.6
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|++.|+||
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 47999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
|++||+++||+||.++. |+|||+.||.+..+|+++-
T Consensus 81 v~~~r~l~Gp~~p~~a~---p~siR~~~g~~~~~N~vH~ 116 (134)
T PRK00668 81 IAKVRELMGATNPAEAA---PGTIRGDFALSIGENVVHG 116 (134)
T ss_pred HHHHHHHhCCCCccccC---CCcchhhhccccccccEEC
Confidence 99999999999998764 9999999999999999863
No 16
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=2.9e-38 Score=250.73 Aligned_cols=119 Identities=33% Similarity=0.471 Sum_probs=114.6
Q ss_pred cccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcc
Q 032064 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (148)
Q Consensus 25 ~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g 104 (148)
+...|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|
T Consensus 85 a~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~G 164 (238)
T PLN02619 85 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEG 164 (238)
T ss_pred cchhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEEC
Confidence 46689999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 105 ENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 105 ~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
+|+|++||+++|||||.++. |+|||+.||++..+|+++-
T Consensus 165 enaV~~~R~LiGpTdP~~A~---PgTIRg~fG~~~~rNaVHg 203 (238)
T PLN02619 165 EGVIKYGRKLIGATDPQKSE---PGTIRGDLAVVVGRNIIHG 203 (238)
T ss_pred CcHHHHHHHHhCCCCccccC---CCcchhhhcccccceeeec
Confidence 99999999999999999775 9999999999999999863
No 17
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=5.7e-38 Score=230.95 Aligned_cols=115 Identities=39% Similarity=0.656 Sum_probs=105.3
Q ss_pred eeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccHH
Q 032064 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~naV 108 (148)
|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||..++++++|+.++++|+|||+++|++.|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 109 TDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 109 ~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
++||+++||+||++|. |+|||++||.+..+|++|-
T Consensus 81 ~~~r~l~Gp~dp~~a~---p~slR~~~g~~~~~N~vH~ 115 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEAA---PGSLRARYGTDIIRNAVHG 115 (135)
T ss_dssp HHHHHHH--SSGGGSS---TTSHHHHH-SSSTG-SEEE
T ss_pred HHHHHhcCCcchhhhc---cccchhceeecCCCCeEEC
Confidence 9999999999999994 9999999999999999984
No 18
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.4e-37 Score=237.14 Aligned_cols=118 Identities=24% Similarity=0.362 Sum_probs=111.7
Q ss_pred ccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHH-----HhcCCCcHHHHHHhhhcCCEEEE
Q 032064 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYA-----EHSSRSFFSSLIKYMTSGPVLAM 100 (148)
Q Consensus 26 ~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~-----~~~~~~~f~~lv~~m~sGpvval 100 (148)
...|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||. +|++++||++|+++|+|||+++|
T Consensus 3 ~~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~val 82 (169)
T PRK14543 3 TLIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVF 82 (169)
T ss_pred CccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEE
Confidence 4579999999999999889999999999999999999999999999999995 78999999999999999999999
Q ss_pred EEccccHHHHHHHHhCCCChhhhhhcCCCCcccccccC----------cccceeec
Q 032064 101 VLEKENAITDWRALIGPTDAKKAKISHPHSFLFLLVIS----------FPFSLEYF 146 (148)
Q Consensus 101 ~l~g~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~----------~~~N~~~~ 146 (148)
+|.|+|||++||+++|||||..|. |+|||+.||.+ .++|++.-
T Consensus 83 vl~g~naI~~~R~l~Gpt~p~~a~---p~tIR~~fg~~~~~~~~~~~~~~rN~vH~ 135 (169)
T PRK14543 83 VVEGVESVEVVRKFCGSTEPKLAI---PGTIRGDFSYHSFNYANEKGFSVYNVIHA 135 (169)
T ss_pred EEECCCHHHHHHHHhCCCCccccC---CCcchhhhcccccccccccccceeeEEEC
Confidence 999999999999999999998775 99999999997 78999853
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=3.5e-37 Score=226.90 Aligned_cols=115 Identities=40% Similarity=0.667 Sum_probs=110.5
Q ss_pred eeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccHH
Q 032064 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~naV 108 (148)
|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.++++|++++++|+|||+++|+|.|+|||
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 68999999999987889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 109 TDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 109 ~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
++||+++||+||..+. |+|||++||.+..+|++|-
T Consensus 81 ~~~r~l~Gp~~~~~~~---p~slR~~~G~~~~~N~vH~ 115 (135)
T smart00562 81 KTWRTLMGPTDPREAA---PGTIRGDFGLDIGRNAVHG 115 (135)
T ss_pred HHHHHHhCCCChhhcC---CcchHHhhcccccceeEEC
Confidence 9999999999996554 9999999999999999874
No 20
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.5e-35 Score=227.18 Aligned_cols=116 Identities=32% Similarity=0.501 Sum_probs=109.2
Q ss_pred cceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHh---------------------------
Q 032064 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH--------------------------- 79 (148)
Q Consensus 27 ~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~--------------------------- 79 (148)
..|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.++
T Consensus 2 ~~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (183)
T PRK14544 2 PIERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLG 81 (183)
T ss_pred CcceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccc
Confidence 46899999999999888899999999999999999999999999999999954
Q ss_pred ------cCCCcHHHHHHhhhcCCEEEEEEccccHHHHHHHHhCCCChhhhhhcCCCCcccccccCc----------ccce
Q 032064 80 ------SSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSFLFLLVISF----------PFSL 143 (148)
Q Consensus 80 ------~~~~~f~~lv~~m~sGpvval~l~g~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~----------~~N~ 143 (148)
.+++||++|++||+||||++|++.|+|||++||+++||+||.+|. |+|||+.||.+. .+|+
T Consensus 82 ~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~---P~TIR~~fg~~~~~~~~~~~~~~~Na 158 (183)
T PRK14544 82 TDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAP---PGTIRGDYSIDSPDLAAEEGRVVYNL 158 (183)
T ss_pred cccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccC---CCCchhhhcccccccccccccceeeE
Confidence 678999999999999999999999999999999999999998885 999999999884 7898
Q ss_pred ee
Q 032064 144 EY 145 (148)
Q Consensus 144 ~~ 145 (148)
++
T Consensus 159 vH 160 (183)
T PRK14544 159 VH 160 (183)
T ss_pred EE
Confidence 76
No 21
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=221.29 Aligned_cols=119 Identities=35% Similarity=0.568 Sum_probs=116.4
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
.|+||++||||++.++.+++||.+++++||+|++.|+++++++++++||.++++++||+.|+.||+|||++||+++|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeec
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYF 146 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~ 146 (148)
|+.||+++|||+|..|+...|+|||+.||.+..+|..|-
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~Hg 123 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHG 123 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCcccc
Confidence 999999999999999999999999999999999999873
No 22
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=59.46 E-value=7.7 Score=25.20 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=23.3
Q ss_pred eeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEE
Q 032064 66 RLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVL 98 (148)
Q Consensus 66 ~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvv 98 (148)
.+|++++++||+.. |++|...--.||.+
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE
Confidence 57999999999764 89998877788865
No 23
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=57.50 E-value=5.3 Score=26.06 Aligned_cols=28 Identities=21% Similarity=0.580 Sum_probs=22.8
Q ss_pred eeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEE
Q 032064 66 RLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVL 98 (148)
Q Consensus 66 ~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvv 98 (148)
++|++++++||.. .|++|...--+||.+
T Consensus 22 ~~spe~V~dfYs~-----~YPeLttA~v~gP~~ 49 (66)
T TIGR03738 22 AMSPEQVRDFYSA-----QYPELLNAEVEGPVV 49 (66)
T ss_pred CCCHHHHHHHHhc-----cCchheeeeeeCCeE
Confidence 5799999999976 388988777778865
No 24
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.90 E-value=44 Score=25.65 Aligned_cols=46 Identities=11% Similarity=0.272 Sum_probs=37.5
Q ss_pred cceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHH
Q 032064 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFY 76 (148)
Q Consensus 27 ~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y 76 (148)
....+.++++|..++. ..+|.+.|.+.-..++++.. |++++|++.-
T Consensus 71 ~~~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvinl~~--m~~~qArRiv 116 (167)
T COG1799 71 QDSSKIVLLEPRKYED--AQEIADYLKNRKAVVINLQR--MDPAQARRIV 116 (167)
T ss_pred CCceEEEEecCccHHH--HHHHHHHHhcCceEEEEeee--CCHHHHHHHH
Confidence 5578999999999875 68899999988777777665 6888887764
No 25
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=43.43 E-value=98 Score=26.37 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHcCceEeEEEEEeeCHHHH-------HhHHHHhcCCC----------cHHH----HHHhhhcCCEEEEE
Q 032064 43 NYTDEIKKVILESGFSILRERVVRLDEDGA-------KTFYAEHSSRS----------FFSS----LIKYMTSGPVLAMV 101 (148)
Q Consensus 43 ~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a-------~~~y~~~~~~~----------~f~~----lv~~m~sGpvval~ 101 (148)
+-.|.|.++|....++-.+.||+.|++.+- ++.|..|+--| -++. +.+.+...|+-.++
T Consensus 151 GtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilv 230 (400)
T KOG0328|consen 151 GTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILV 230 (400)
T ss_pred CCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEE
Confidence 446899999999999999999999998763 45565554322 1222 23444456877777
Q ss_pred EccccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcc
Q 032064 102 LEKENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFP 140 (148)
Q Consensus 102 l~g~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~ 140 (148)
=..+-..+-.+++.=.-+-++.+ -++|-..|++-..
T Consensus 231 krdeltlEgIKqf~v~ve~EewK---fdtLcdLYd~LtI 266 (400)
T KOG0328|consen 231 KRDELTLEGIKQFFVAVEKEEWK---FDTLCDLYDTLTI 266 (400)
T ss_pred ecCCCchhhhhhheeeechhhhh---HhHHHHHhhhheh
Confidence 65555555555554333444433 5666666665333
No 26
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=39.07 E-value=89 Score=22.57 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=25.1
Q ss_pred EEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHH
Q 032064 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGA 72 (148)
Q Consensus 32 l~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a 72 (148)
++-+++|....+ ..=+-..++.+||+++...... +++++
T Consensus 7 ~a~~g~D~Hd~g-~~iv~~~l~~~GfeVi~lg~~~-s~e~~ 45 (132)
T TIGR00640 7 VAKMGQDGHDRG-AKVIATAYADLGFDVDVGPLFQ-TPEEI 45 (132)
T ss_pred EEeeCCCccHHH-HHHHHHHHHhCCcEEEECCCCC-CHHHH
Confidence 455666665432 1224467788999999998875 55544
No 27
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=38.78 E-value=26 Score=24.84 Aligned_cols=17 Identities=35% Similarity=0.823 Sum_probs=15.2
Q ss_pred CHHHHHhHHHHhcCCCc
Q 032064 68 DEDGAKTFYAEHSSRSF 84 (148)
Q Consensus 68 s~e~a~~~y~~~~~~~~ 84 (148)
+.+.|.+||..+.|++|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 56789999999999987
No 28
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=37.01 E-value=61 Score=20.83 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=27.7
Q ss_pred EEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHH
Q 032064 33 AMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAE 78 (148)
Q Consensus 33 ~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~ 78 (148)
.+++|..++. +.+|.+.|++....|.++. .|+.++++++...
T Consensus 2 ~v~~p~~~~D--~~~i~~~l~~g~~Vivnl~--~l~~~~~~Ri~Df 43 (73)
T PF04472_consen 2 VVFEPKSFED--AREIVDALREGKIVIVNLE--NLDDEEAQRILDF 43 (73)
T ss_dssp EEEE-SSGGG--HHHHHHHHHTT--EEEE-T--TS-HHHHHHHHHH
T ss_pred EEEeeCCHHH--HHHHHHHHHcCCEEEEECC--CCCHHHHHHHHHH
Confidence 5789998865 7889999998877776664 4677777766543
No 29
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=33.85 E-value=3.8e+02 Score=25.91 Aligned_cols=120 Identities=15% Similarity=0.278 Sum_probs=73.6
Q ss_pred CcccceeEEEEEcCCcccCcchhHHHHHHHHcCceE--eEEEEEeeCHHHHHhHHHHhcCCCcHHHH---HHhhhcC---
Q 032064 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSI--LRERVVRLDEDGAKTFYAEHSSRSFFSSL---IKYMTSG--- 95 (148)
Q Consensus 24 ~~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I--~~~k~~~ls~e~a~~~y~~~~~~~~f~~l---v~~m~sG--- 95 (148)
+.....+|++.-|-+.. ...|...+..+--+- .-++.+.-+-+++..+-.....+..||++ ++.|+.|
T Consensus 422 ~g~~~~KTIvFa~n~dH----Ae~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDv 497 (875)
T COG4096 422 TGDEIGKTIVFAKNHDH----AERIREALVNEYPEYNGRYAMKITGDAEQAQALIDNFIDKEKYPRIAITVDLLTTGVDV 497 (875)
T ss_pred CCCccCceEEEeeCcHH----HHHHHHHHHHhCccccCceEEEEeccchhhHHHHHHHHhcCCCCceEEehhhhhcCCCc
Confidence 34456789988887753 556666666654332 23455666777777777776667778886 6899999
Q ss_pred -CEEEEEEcc-ccHHHHHHHHhCCCChhhhhhcCCCCcccccc-cCcccceeecc
Q 032064 96 -PVLAMVLEK-ENAITDWRALIGPTDAKKAKISHPHSFLFLLV-ISFPFSLEYFQ 147 (148)
Q Consensus 96 -pvval~l~g-~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG-~~~~~N~~~~~ 147 (148)
+|+-+++-. .-.-.++.+++|-....-.....|++=..-|= -|...|..||+
T Consensus 498 pev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~ 552 (875)
T COG4096 498 PEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFE 552 (875)
T ss_pred hheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhc
Confidence 566677654 45677899999954321111111321111111 26777777775
No 30
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=89 Score=22.62 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=34.8
Q ss_pred EeeCHHHHHhHHHHhcCCC-----------cHHHHHHhhhcCCEEEEEEccccHHHHHHHHhCC
Q 032064 65 VRLDEDGAKTFYAEHSSRS-----------FFSSLIKYMTSGPVLAMVLEKENAITDWRALIGP 117 (148)
Q Consensus 65 ~~ls~e~a~~~y~~~~~~~-----------~f~~lv~~m~sGpvval~l~g~naV~~~r~l~Gp 117 (148)
.+++.++++++|.+-.+.- .-++..+++.+-.|-+.++..+.||++|.++-|.
T Consensus 47 Hkl~~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~ 110 (121)
T COG1504 47 HKLALEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGK 110 (121)
T ss_pred cccCHHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhcc
Confidence 4567777777776544321 1233345555556777888888999999999875
No 31
>PRK12483 threonine dehydratase; Reviewed
Probab=31.38 E-value=1.5e+02 Score=26.63 Aligned_cols=55 Identities=18% Similarity=0.403 Sum_probs=36.6
Q ss_pred hHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCC--------EEEEEE-ccccHHHHHHHHhC
Q 032064 46 DEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGP--------VLAMVL-EKENAITDWRALIG 116 (148)
Q Consensus 46 g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGp--------vval~l-~g~naV~~~r~l~G 116 (148)
.+|++.|+++|+.+... +. .+.+...+.||.+|- +.+..+ +.+.+..++-+.+|
T Consensus 400 ~~i~~~l~~~g~~~~dl-----sd------------ne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~ 462 (521)
T PRK12483 400 AQLLASLRAQGFPVLDL-----TD------------DELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLG 462 (521)
T ss_pred HHHHHHHHHCCCCeEEC-----CC------------CHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhC
Confidence 66777777777765533 32 233445567787772 455566 67889999999999
Q ss_pred C
Q 032064 117 P 117 (148)
Q Consensus 117 p 117 (148)
|
T Consensus 463 ~ 463 (521)
T PRK12483 463 P 463 (521)
T ss_pred C
Confidence 8
No 32
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=28.10 E-value=68 Score=27.06 Aligned_cols=46 Identities=17% Similarity=0.383 Sum_probs=37.5
Q ss_pred EEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcC
Q 032064 34 MIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81 (148)
Q Consensus 34 lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~ 81 (148)
+|-|..+-.++++.|-+.|.++|| .+.-.+.-+-.-|..||..+++
T Consensus 153 iVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImsYsaKyaSafYGPFRd 198 (314)
T cd00384 153 IVAPSDMMDGRVAAIREALDEAGF--SDVPIMSYSAKYASAFYGPFRD 198 (314)
T ss_pred eeecccccccHHHHHHHHHHHCCC--CCCceeecHHHhhhhccchHHH
Confidence 577876666889999999999999 5566777788889999988764
No 33
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=25.69 E-value=1.5e+02 Score=23.57 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=25.8
Q ss_pred eeEEEEEcCCcccCcchhHHHHHHHHcCceEeEE
Q 032064 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRE 62 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~ 62 (148)
...+++..|+.....-....++.+.+.|..+...
T Consensus 161 ~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gv 194 (254)
T cd00550 161 TSFRLVCIPEKMSLYETERAIQELAKYGIDVDAV 194 (254)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEE
Confidence 3578999999876555677889999988765443
No 34
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=25.16 E-value=90 Score=27.61 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=50.5
Q ss_pred EEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHH-----------HHHhhhcCCEEEE
Q 032064 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS-----------LIKYMTSGPVLAM 100 (148)
Q Consensus 32 l~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~-----------lv~~m~sGpvval 100 (148)
.++|||..++. ...+++..+..+=|.=...+.+.=..++..++..+.=|.-||.. -..|+| -+.|
T Consensus 134 ~VVlKPSEls~-n~a~~lakllp~Yld~~~~~VV~Ggv~ETt~LL~~rfD~IfyTGsp~VgkIim~aAaKhLT---PvtL 209 (477)
T KOG2456|consen 134 AVVLKPSELSP-NTAKLLAKLLPQYLDQDLIRVVNGGVPETTELLKQRFDHIFYTGSPRVGKIIMAAAAKHLT---PVTL 209 (477)
T ss_pred EEEechhhcCh-hHHHHHHHHHHHhcCcceEEEecCCCchHHHHHHhhccEEEecCCchHHHHHHHHHHhcCC---cEEE
Confidence 47899999875 47788887776667777778888888888888877666666643 123444 4678
Q ss_pred EEccc
Q 032064 101 VLEKE 105 (148)
Q Consensus 101 ~l~g~ 105 (148)
+|.|.
T Consensus 210 ELGGK 214 (477)
T KOG2456|consen 210 ELGGK 214 (477)
T ss_pred EcCCC
Confidence 88774
No 35
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=25.10 E-value=1.1e+02 Score=26.36 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=38.0
Q ss_pred HHHHHcCceEeEEEEEeeCHHHHHhHHHHhcC------------CCcHHHHHHhhhcCCEEEEEE
Q 032064 50 KVILESGFSILRERVVRLDEDGAKTFYAEHSS------------RSFFSSLIKYMTSGPVLAMVL 102 (148)
Q Consensus 50 ~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~------------~~~f~~lv~~m~sGpvval~l 102 (148)
+.+.+.|++|....--.++.++...||.-|.. ..||..+.+-|...-++++..
T Consensus 193 r~v~~~Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~ 257 (370)
T PF04339_consen 193 RKVAEQGIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVAR 257 (370)
T ss_pred HHHHHcCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEE
Confidence 45566899999998888999988777665543 257888888776555444443
No 36
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=24.80 E-value=97 Score=25.70 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=41.8
Q ss_pred hhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccHHHHHHHHhCCCChhhhh
Q 032064 45 TDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124 (148)
Q Consensus 45 ~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~naV~~~r~l~Gptdp~~a~ 124 (148)
..++.+.++++||+++......-+.. .+ .+..++|.... +.+++.|.|+.+.-
T Consensus 255 ~~~l~~~L~~aGF~~i~~~~~~~t~~------~e-------qr~t~w~~~~s--------------l~~fld~~~~~~t~ 307 (322)
T PRK15068 255 VPALKNWLERAGFKDVRIVDVSVTTT------EE-------QRKTEWMTTES--------------LADFLDPNDPSKTI 307 (322)
T ss_pred HHHHHHHHHHcCCceEEEEeCCCCCc------cc-------cccccCcccCc--------------HhhcCCCCCCCCcc
Confidence 46788999999999888876544310 01 11223343222 67777888888888
Q ss_pred hcCCCCccccc
Q 032064 125 ISHPHSFLFLL 135 (148)
Q Consensus 125 ~~~P~sLRa~f 135 (148)
+-.|-..|+.+
T Consensus 308 eg~pap~r~~~ 318 (322)
T PRK15068 308 EGYPAPKRAVL 318 (322)
T ss_pred cCCCCccEEEE
Confidence 88888888754
No 37
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=24.75 E-value=93 Score=26.36 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=37.0
Q ss_pred EEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcC
Q 032064 34 MIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81 (148)
Q Consensus 34 lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~ 81 (148)
+|-|..+-.++++.|-+.|.++||. +...+.-+-.-|..||..+++
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 208 (322)
T PRK13384 163 MLAPSAMMDGQVKAIRQGLDAAGFE--HVAILAHSAKFASSFYGPFRA 208 (322)
T ss_pred eEecccccccHHHHHHHHHHHCCCC--CCceeehhHhhhhhhcchHHH
Confidence 5777766668899999999999994 566777788889999988663
No 38
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.52 E-value=3.8e+02 Score=21.63 Aligned_cols=72 Identities=7% Similarity=0.167 Sum_probs=40.7
Q ss_pred eEEEEEcCCc-ccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHH-HhhhcCC-EEEEEEcccc
Q 032064 30 KTLAMIKPDG-LSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLI-KYMTSGP-VLAMVLEKEN 106 (148)
Q Consensus 30 ~Tl~lIKPda-~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv-~~m~sGp-vval~l~g~n 106 (148)
+.++++-+|. ..+.....+.+.+.+.|.+++....+..+..+ |...+ +...+|| ++.+...+.+
T Consensus 139 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d-------------~s~~i~~i~~~~~d~v~~~~~~~~ 205 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKD-------------MTAQLLRAKAAGADAIIIVGNGPE 205 (347)
T ss_pred CeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCcc-------------HHHHHHHHHhCCCCEEEEEecChH
Confidence 5666776664 43344566778888888888876665544222 22222 3344566 4444445556
Q ss_pred HHHHHHHH
Q 032064 107 AITDWRAL 114 (148)
Q Consensus 107 aV~~~r~l 114 (148)
++.-++++
T Consensus 206 ~~~~~~~~ 213 (347)
T cd06335 206 GAQIANGM 213 (347)
T ss_pred HHHHHHHH
Confidence 66555544
No 39
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=24.44 E-value=50 Score=21.66 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=17.7
Q ss_pred eEeEEEEEeeCHHHHHhHHH
Q 032064 58 SILRERVVRLDEDGAKTFYA 77 (148)
Q Consensus 58 ~I~~~k~~~ls~e~a~~~y~ 77 (148)
.|+..+.+.||+++|+.|+.
T Consensus 4 viva~RHIHms~~da~~l~~ 23 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFG 23 (71)
T ss_pred EEEEccccCCCHHHHHHhCC
Confidence 47888999999999999975
No 40
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=24.22 E-value=82 Score=26.71 Aligned_cols=89 Identities=19% Similarity=0.301 Sum_probs=61.3
Q ss_pred EEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCC----C--------------------------
Q 032064 34 MIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSR----S-------------------------- 83 (148)
Q Consensus 34 lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~----~-------------------------- 83 (148)
+|-|..+-.++++.|-+.|.++||. +...+.-+-.-|..||..+++. +
T Consensus 161 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~ 238 (323)
T PRK09283 161 IVAPSDMMDGRVGAIREALDEAGFT--DVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDI 238 (323)
T ss_pred EEEcccccccHHHHHHHHHHHCCCC--CCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhH
Confidence 5777766568899999999999994 5677777888899999987751 0
Q ss_pred -------------cHHHHHHhh---hcCCEEEEEEccccHHHHHHHHhCCCChhhhh
Q 032064 84 -------------FFSSLIKYM---TSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124 (148)
Q Consensus 84 -------------~f~~lv~~m---~sGpvval~l~g~naV~~~r~l~Gptdp~~a~ 124 (148)
.|=+++.-+ +.=|+.+..+.|+-+--+.-...|-.|...+-
T Consensus 239 ~EGAD~lMVKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D~~~~~ 295 (323)
T PRK09283 239 EEGADMVMVKPALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEERVV 295 (323)
T ss_pred HhCCCEEEEcCCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCCHHHHH
Confidence 122233222 23488888888877666666666666655443
No 41
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=23.41 E-value=2.2e+02 Score=18.52 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=27.5
Q ss_pred eEEEEEcCCcccCcchhHHHHHHHHc---CceEeEEEEEeeCHHHHHhHHHH
Q 032064 30 KTLAMIKPDGLSGNYTDEIKKVILES---GFSILRERVVRLDEDGAKTFYAE 78 (148)
Q Consensus 30 ~Tl~lIKPda~~~~~~g~II~~i~~~---Gf~I~~~k~~~ls~e~a~~~y~~ 78 (148)
-....|.|+.-.++.-..+++.+.+. |+....+. +...+..||..
T Consensus 67 i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~~~~~l~~~----~~~~a~~~y~~ 114 (117)
T PF13673_consen 67 ISHLYVLPEYRGRGIGRALLDAAEKEAKDGIRRLTVE----ANERARRFYRK 114 (117)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHTTTCEEEEEE----C-HHHHHHHHH
T ss_pred EEEEEEChhhcCCcHHHHHHHHHHHHHHcCCcEEEEE----eCHHHHHHHHh
Confidence 55677888865555333344444332 88877777 77788888865
No 42
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=23.16 E-value=1.3e+02 Score=26.66 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=25.1
Q ss_pred CcHHHHHHhhhcCCE--E------EEEE-ccccHHHHHHHHhCCCC
Q 032064 83 SFFSSLIKYMTSGPV--L------AMVL-EKENAITDWRALIGPTD 119 (148)
Q Consensus 83 ~~f~~lv~~m~sGpv--v------al~l-~g~naV~~~r~l~Gptd 119 (148)
..+...+.||.+|-. + -+++ +.+.|..++-+.+||.+
T Consensus 399 e~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~~~ 444 (499)
T TIGR01124 399 ELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQGYW 444 (499)
T ss_pred HHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcCCCC
Confidence 345667788888832 1 1222 46889999999999865
No 43
>PF15323 Ashwin: Developmental protein
Probab=22.80 E-value=76 Score=25.34 Aligned_cols=43 Identities=19% Similarity=0.392 Sum_probs=34.6
Q ss_pred EEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhc
Q 032064 33 AMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80 (148)
Q Consensus 33 ~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~ 80 (148)
.++-|+-+.. ..++..|.+.++.+.+ ..++++++..++|..|.
T Consensus 3 ~LlhPElLS~---~~Ll~iL~~r~I~~~~--~~~~~kd~L~~Ly~q~~ 45 (214)
T PF15323_consen 3 LLLHPELLSR---EFLLLILRQRNIDVEN--DEKLDKDELTELYVQHA 45 (214)
T ss_pred cccChhhcCH---HHHHHHHHHcCcCccc--hhhcCHHHHHHHHHHHh
Confidence 4678888764 6788888999998887 66789999999987664
No 44
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=22.08 E-value=1.2e+02 Score=19.78 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=17.5
Q ss_pred hhHHHHHHHHcCceEeEEEE
Q 032064 45 TDEIKKVILESGFSILRERV 64 (148)
Q Consensus 45 ~g~II~~i~~~Gf~I~~~k~ 64 (148)
..++|..|+..||..+..|=
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 46899999999999998874
No 45
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.84 E-value=1.9e+02 Score=16.88 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=23.5
Q ss_pred EEEEcCCcccCcchhHHHHHHHHcCceEeEEEEE
Q 032064 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVV 65 (148)
Q Consensus 32 l~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~ 65 (148)
+.+.-+|.- +...+|.+.+.+.|..|..+...
T Consensus 2 l~i~~~d~~--g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 2 LIVVHKDKP--GAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred EEEEeCCCC--ChHHHHHHHHHHcCcCeeeeEEE
Confidence 445555543 45789999999999999887653
Done!