Query 032064
Match_columns 148
No_of_seqs 122 out of 1053
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hr2_A Nucleoside diphosphate 100.0 1.8E-43 6.1E-48 262.8 10.5 119 24-145 3-121 (145)
2 3ztp_A Nucleoside diphosphate 100.0 2.3E-43 7.9E-48 261.6 10.8 119 27-145 2-120 (142)
3 3fkb_A NDP kinase, NDK, nucleo 100.0 3.1E-42 1.1E-46 258.7 10.9 121 22-145 2-122 (155)
4 3mpd_A Nucleoside diphosphate 100.0 3.7E-42 1.3E-46 257.3 10.4 117 26-145 3-119 (151)
5 3evo_A NDP kinase, NDK, nucleo 100.0 5.1E-42 1.7E-46 255.4 10.5 117 26-145 4-121 (146)
6 4fkx_A NDK B, nucleoside dipho 100.0 6.3E-42 2.2E-46 258.2 10.9 117 26-145 9-125 (161)
7 3q8u_A Nucleoside diphosphate 100.0 8E-42 2.7E-46 256.9 10.4 115 28-145 1-115 (157)
8 1wkj_A Nucleoside diphosphate 100.0 1.2E-41 4E-46 251.1 10.3 115 28-145 1-115 (137)
9 3l7u_A Nucleoside diphosphate 100.0 1.4E-41 4.6E-46 258.7 10.5 118 25-145 21-138 (172)
10 1k44_A Nucleoside diphosphate 100.0 1.7E-41 5.8E-46 249.9 10.6 115 28-145 2-117 (136)
11 3r9l_A Nucleoside diphosphate 100.0 4.1E-42 1.4E-46 258.0 6.7 119 24-145 3-121 (155)
12 1ehw_A NDPK H4, nucleoside dip 100.0 3.8E-41 1.3E-45 254.4 11.1 117 26-145 22-138 (162)
13 1nhk_R Nucleoside diphosphate 100.0 3.5E-41 1.2E-45 250.4 10.7 115 28-145 2-116 (144)
14 2hur_A NDK, nucleoside diphosp 100.0 3E-41 1E-45 250.2 10.3 115 28-145 2-116 (142)
15 1pku_A Nucleoside diphosphate 100.0 4.2E-41 1.4E-45 251.5 10.6 115 28-145 2-116 (150)
16 2vu5_A Nucleoside diphosphate 100.0 3.4E-41 1.2E-45 251.5 9.7 115 28-145 1-115 (148)
17 1s57_A Nucleoside diphosphate 100.0 6.9E-41 2.4E-45 251.0 10.6 116 27-145 4-119 (153)
18 3bbb_A Nucleoside diphosphate 100.0 8.8E-41 3E-45 250.0 10.9 116 27-145 2-117 (151)
19 1xiq_A Nucleoside diphosphate 100.0 5.4E-41 1.9E-45 252.4 9.5 116 27-145 8-123 (157)
20 3b54_A NDK, NDP kinase, nucleo 100.0 4.1E-41 1.4E-45 254.0 8.8 118 25-145 10-127 (161)
21 1u8w_A Nucleoside diphosphate 100.0 6.7E-41 2.3E-45 250.1 9.7 115 28-145 1-115 (149)
22 1zs6_A Nucleoside diphosphate 100.0 1.4E-40 4.7E-45 252.9 10.9 118 25-145 18-135 (169)
23 2az3_A Nucleoside diphosphate 100.0 1.9E-40 6.4E-45 251.1 11.0 118 25-145 5-122 (164)
24 3js9_A Nucleoside diphosphate 100.0 1.6E-40 5.5E-45 249.6 10.4 116 27-145 8-123 (156)
25 2dxe_A Nucleoside diphosphate 100.0 1.8E-40 6.1E-45 250.3 10.7 116 27-145 6-124 (160)
26 1nb2_A Nucleoside diphosphate 100.0 4.5E-41 1.5E-45 251.3 7.1 115 28-145 2-116 (150)
27 1w7w_A Nucleoside diphosphate 100.0 2.3E-40 8E-45 254.1 10.7 119 24-145 28-146 (182)
28 4dz6_A Nucleoside diphosphate 100.0 6.3E-40 2.1E-44 253.0 9.0 118 25-145 23-155 (190)
29 1xqi_A Nucleoside diphosphate 100.0 2.7E-37 9.2E-42 239.4 8.0 117 26-145 13-172 (195)
30 3bh7_B Protein XRP2; protein-p 99.9 5.8E-26 2E-30 189.3 9.1 91 25-120 232-322 (352)
31 3p04_A Uncharacterized BCR; SE 69.7 3.9 0.00013 27.0 3.0 44 29-76 4-47 (87)
32 3i5g_C Myosin catalytic light 36.6 24 0.00083 24.4 2.8 32 66-97 117-154 (159)
33 2vrq_A Alpha-L-arabinofuranosi 29.0 35 0.0012 28.8 3.0 50 92-147 120-172 (496)
34 3ug3_A Alpha-L-arabinofuranosi 21.1 52 0.0018 28.2 2.5 53 89-147 133-188 (504)
35 1jr2_A Uroporphyrinogen-III sy 20.3 1.7E+02 0.0057 22.1 5.2 44 25-69 17-61 (286)
No 1
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=1.8e-43 Score=262.82 Aligned_cols=119 Identities=37% Similarity=0.559 Sum_probs=115.1
Q ss_pred CcccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEc
Q 032064 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLE 103 (148)
Q Consensus 24 ~~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~ 103 (148)
+++..|+||+|||||+++++++|+||++|+++||+|+++|+++||+++|++||.+|++++||++|++||+||||++|+|+
T Consensus 3 g~m~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vle 82 (145)
T 4hr2_A 3 GSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLE 82 (145)
T ss_dssp -CCCEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred CcchHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 104 KENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 104 g~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|+|||+.||+++|||||.+|+ |+|||+.||.+..+|++.
T Consensus 83 g~~aV~~~R~l~G~tdp~~A~---pgtIR~~fg~~~~~N~vH 121 (145)
T 4hr2_A 83 GEDAILKNRDLMGATDPKKAE---KGTIRADFADSIDANAVH 121 (145)
T ss_dssp EETHHHHHHHHHCCSSTTTSC---TTSHHHHHCSBTTBCSEE
T ss_pred cCCcHhHHhhccCCCCcccCC---CCCcHHHhcCCcCccceE
Confidence 999999999999999999997 999999999999999985
No 2
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=2.3e-43 Score=261.59 Aligned_cols=119 Identities=34% Similarity=0.534 Sum_probs=116.3
Q ss_pred cceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcccc
Q 032064 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (148)
Q Consensus 27 ~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~n 106 (148)
..|+||+|||||+++++++|+||++|+++||+|+++|++++|+++|++||.+|++++||++|++||+||||++|+|+|+|
T Consensus 2 ~~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~n 81 (142)
T 3ztp_A 2 AVERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGED 81 (142)
T ss_dssp CEEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred ccceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCC
Confidence 36999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 107 AITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 107 aV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
||++||+++|||||.+|+...|+|||+.||.+..+|+++
T Consensus 82 aV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vH 120 (142)
T 3ztp_A 82 AIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIH 120 (142)
T ss_dssp HHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEE
T ss_pred HHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEE
Confidence 999999999999999999999999999999999999986
No 3
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=3.1e-42 Score=258.67 Aligned_cols=121 Identities=31% Similarity=0.479 Sum_probs=114.2
Q ss_pred CCCcccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEE
Q 032064 22 SNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMV 101 (148)
Q Consensus 22 ~~~~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~ 101 (148)
|+.....|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+
T Consensus 2 ~~~k~~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamv 81 (155)
T 3fkb_A 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 81 (155)
T ss_dssp ----CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEE
T ss_pred CCCCcccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEE
Confidence 34566789999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 102 LEKENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 102 l~g~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|+|+|||+.||+++|||||..|. |+|||+.||.+..+|+++
T Consensus 82 leg~naV~~~R~l~G~t~p~~a~---PgtIR~~fg~~~~~N~vH 122 (155)
T 3fkb_A 82 FEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIG 122 (155)
T ss_dssp EESTTHHHHHHHHHCCSSGGGSC---TTSHHHHHCCBTTBCSEE
T ss_pred EeCCCHHHHHHHhcCCCChhhcC---CCChhHHhCCCccceeEE
Confidence 99999999999999999999885 999999999999999986
No 4
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=3.7e-42 Score=257.35 Aligned_cols=117 Identities=29% Similarity=0.326 Sum_probs=112.6
Q ss_pred ccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccc
Q 032064 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (148)
Q Consensus 26 ~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~ 105 (148)
...|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+
T Consensus 3 ~~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~ 82 (151)
T 3mpd_A 3 GSMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGK 82 (151)
T ss_dssp --CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCC
Confidence 34799999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 106 NAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 106 naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|||+.||+++|||||.+|. |+|||+.||.+..+|+++
T Consensus 83 naV~~~R~l~G~t~p~~a~---PgtiR~~fg~~~~~N~vH 119 (151)
T 3mpd_A 83 DAVSIGRKLIGETNPQAAS---VGTIRGDYGVSTGKNIIH 119 (151)
T ss_dssp THHHHHHHHHCCSSTTTSC---TTSHHHHHCCSSTTCSEE
T ss_pred cHHHHHHHHhCCCChhhcC---CCChhHHhCCCccceeEE
Confidence 9999999999999999885 999999999999999986
No 5
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=5.1e-42 Score=255.36 Aligned_cols=117 Identities=27% Similarity=0.396 Sum_probs=112.8
Q ss_pred ccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEee-CHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcc
Q 032064 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRL-DEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (148)
Q Consensus 26 ~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~l-s~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g 104 (148)
...|+||+|||||+++++++|+||++|+++||+|+++||+++ |+++|++||.+|++++||++|++||+||||++|+|+|
T Consensus 4 ~~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg 83 (146)
T 3evo_A 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG 83 (146)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred CcceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeC
Confidence 347999999999999998999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 105 ENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 105 ~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
+|||+.||+++|||||.+|. |+|||+.||.+..+|+++
T Consensus 84 ~naV~~~R~l~G~t~p~~A~---pgtiR~~fg~~~~~N~vH 121 (146)
T 3evo_A 84 TDAISKIRRLQGNTNPLASA---PGTIRGDLANDIRENLIH 121 (146)
T ss_dssp TTHHHHHHHHHCCSSTTTCC---TTSHHHHHCCSSSCCSEE
T ss_pred CCHHHHHHHHcCCCCcccCC---CCChHHHhCCCccceeEE
Confidence 99999999999999999995 999999999999999986
No 6
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=6.3e-42 Score=258.22 Aligned_cols=117 Identities=26% Similarity=0.483 Sum_probs=113.7
Q ss_pred ccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccc
Q 032064 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (148)
Q Consensus 26 ~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~ 105 (148)
+..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+
T Consensus 9 ~~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 88 (161)
T 4fkx_A 9 MPSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGL 88 (161)
T ss_dssp CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CCcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEecc
Confidence 45799999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 106 NAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 106 naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|||+.||+++|||||.+|. |+|||+.||++..+|+++
T Consensus 89 naV~~~R~l~GpTdp~~A~---PgTIR~~fg~~~~~N~vH 125 (161)
T 4fkx_A 89 GVVKGGRVLLGATNPADSL---PGTIRGDFAVDVGRNVCH 125 (161)
T ss_dssp THHHHHHHHHCCSSGGGCC---TTSHHHHHCCBTTBCCEE
T ss_pred ChHHHHHHHhcCCChhhcC---CCChhHhhCCCccceeEE
Confidence 9999999999999999885 999999999999999986
No 7
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=8e-42 Score=256.89 Aligned_cols=115 Identities=32% Similarity=0.512 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 80 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA 80 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|++||+++|||||.+|. |+|||+.||.+..+|+++
T Consensus 81 V~~~R~l~GpTdp~~A~---PgtIR~~fg~~~~~N~vH 115 (157)
T 3q8u_A 81 VNVSRHIIGSTNPSEAS---PGSIRGDLGLTVGRNIIH 115 (157)
T ss_dssp HHHHHHHHCCSSTTTSC---TTSHHHHHCCBTTBCSEE
T ss_pred HHHHHHHcCCCChhhcC---CCChHHHhCCCCCCeeEE
Confidence 99999999999999985 999999999999999986
No 8
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=1.2e-41 Score=251.08 Aligned_cols=115 Identities=32% Similarity=0.544 Sum_probs=112.2
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
.|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence 38999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|++||+++|||||.+|. |+|||+.||.+..+|+++
T Consensus 81 V~~~R~l~G~t~p~~A~---pgtiR~~fg~~~~~N~vH 115 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDAL---PGTIRGDFATTIDENVIH 115 (137)
T ss_dssp HHHHHHHHCCSSTTTCC---TTSHHHHHCCCSTTCSEE
T ss_pred HHHHHHHhCCCCCCcCC---CCcchHHhCCCcccceEE
Confidence 99999999999999995 999999999999999986
No 9
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=258.71 Aligned_cols=118 Identities=32% Similarity=0.495 Sum_probs=114.4
Q ss_pred cccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcc
Q 032064 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (148)
Q Consensus 25 ~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g 104 (148)
.+..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|
T Consensus 21 ~~~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg 100 (172)
T 3l7u_A 21 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEG 100 (172)
T ss_dssp CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEES
T ss_pred cchhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeC
Confidence 45689999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 105 ENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 105 ~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
+|||++||+++|||||.+|. |+|||+.||++..+|+++
T Consensus 101 ~naV~~~R~l~GpTdp~~A~---PgTIR~~fg~~~~~N~VH 138 (172)
T 3l7u_A 101 LNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIH 138 (172)
T ss_dssp TTHHHHHHHHHCCSSTTTCC---TTSHHHHHCCCGGGCCEE
T ss_pred CCHHHHHHHHcCCCChhhcC---CCChhHHhcCCCCCcEEE
Confidence 99999999999999999886 999999999999999986
No 10
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=1.7e-41 Score=249.95 Aligned_cols=115 Identities=35% Similarity=0.533 Sum_probs=112.2
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
.|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 81 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence 48999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChh-hhhhcCCCCcccccccCcccceee
Q 032064 108 ITDWRALIGPTDAK-KAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 108 V~~~r~l~Gptdp~-~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|++||+++|||||. +| .|+|||+.||.+..+|+++
T Consensus 82 V~~~R~l~G~t~p~~~A---~pgtiR~~fg~~~~~N~vH 117 (136)
T 1k44_A 82 IAAVRQLAGGTDPVQAA---APGTIRGDFALETQFNLVH 117 (136)
T ss_dssp HHHHHHHHCCSSTTTTS---CTTSHHHHHCCCSTTCCEE
T ss_pred HHHHHHHhCCCCccccC---CCCCcHHHhcCCccceEEE
Confidence 99999999999999 88 4999999999999999986
No 11
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=4.1e-42 Score=258.02 Aligned_cols=119 Identities=29% Similarity=0.483 Sum_probs=87.1
Q ss_pred CcccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEc
Q 032064 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLE 103 (148)
Q Consensus 24 ~~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~ 103 (148)
+++..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+
T Consensus 3 ~~m~~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvle 82 (155)
T 3r9l_A 3 GSMARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWE 82 (155)
T ss_dssp --CCSCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEE
T ss_pred CccchheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEe
Confidence 34668999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 104 KENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 104 g~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|+|||++||+++|||||.+|. |+|||+.||++..+|+++
T Consensus 83 g~naV~~~R~l~G~t~p~~a~---PgtIR~~fg~~~~~N~vH 121 (155)
T 3r9l_A 83 GANVVSISRTMMGVTKPAESA---PGTIRGDFGIDVGRNIIH 121 (155)
T ss_dssp STTHHHHHHHHHCCSCTTTCC---TTSHHHHHCCSSTTCCEE
T ss_pred CCCHHHHHHHhcCCCChhhcC---CCChhHHhCCCccceeEE
Confidence 999999999999999999885 999999999999999986
No 12
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=3.8e-41 Score=254.36 Aligned_cols=117 Identities=28% Similarity=0.490 Sum_probs=113.7
Q ss_pred ccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccc
Q 032064 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (148)
Q Consensus 26 ~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~ 105 (148)
...|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+
T Consensus 22 ~~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 101 (162)
T 1ehw_A 22 GTRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGY 101 (162)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred chhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEech
Confidence 45799999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 106 NAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 106 naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|||++||+++|||||.+|. |+|||+.||.+..+|+++
T Consensus 102 naV~~~R~l~G~T~p~~A~---PgtIR~~fg~~~~~N~vH 138 (162)
T 1ehw_A 102 NVVRASRAMIGHTDSAEAA---PGTIRGDFSVHISRNVIH 138 (162)
T ss_dssp THHHHHHHHHCCSSGGGSC---TTSHHHHHCCCSSCCSEE
T ss_pred hHHHHHHHHhCCCCCCCCC---CCChHHHhCCCCCCeEEE
Confidence 9999999999999999985 999999999999999986
No 13
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=3.5e-41 Score=250.37 Aligned_cols=115 Identities=35% Similarity=0.514 Sum_probs=112.4
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
.|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|+.||+++|||||.+|. |+|||+.||.+..+|+++
T Consensus 82 V~~~R~l~G~t~p~~A~---pgtIR~~fg~~~~~N~vH 116 (144)
T 1nhk_R 82 VLANRDIMGATNPAQAA---EGTIRKDFATSIDKNTVH 116 (144)
T ss_dssp HHHHHHHHCCSSGGGCC---TTSHHHHHCCSSSSCSEE
T ss_pred HHHHHHHhCCCCCCcCC---CCcchHHhCCCCcceeEE
Confidence 99999999999999985 999999999999999986
No 14
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=3e-41 Score=250.21 Aligned_cols=115 Identities=32% Similarity=0.527 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
.|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence 48999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|++||+++|||||.+|. |+|||+.||.+..+|+++
T Consensus 82 V~~~R~l~G~t~p~~A~---pgtiR~~fg~~~~~N~vH 116 (142)
T 2hur_A 82 VQRHRDLLGATNPANAL---AGTLRADYADSLTENGTH 116 (142)
T ss_dssp HHHHHHHHCCSSTTTSC---TTSHHHHHCSSSTTCSEE
T ss_pred HHHHHHHhCCCCcccCC---CCcchHHhCCCcccceEE
Confidence 99999999999999985 999999999999999986
No 15
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=4.2e-41 Score=251.49 Aligned_cols=115 Identities=28% Similarity=0.467 Sum_probs=112.4
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 81 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV 81 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccch
Confidence 58999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|++||+++|||||..|. |+|||+.||.+..+|+++
T Consensus 82 V~~~R~l~G~t~p~~A~---pgtIR~~fg~~~~~N~vH 116 (150)
T 1pku_A 82 VATGRRIIGATRPWEAA---PGTIRADYAVEVGRNVIH 116 (150)
T ss_dssp HHHHHHHHCCSSGGGSC---TTSHHHHHCSBTTBCSEE
T ss_pred HHHHHHHhCCCCcccCC---CCChHHHhCCCccceeEE
Confidence 99999999999999985 999999999999999986
No 16
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=3.4e-41 Score=251.48 Aligned_cols=115 Identities=30% Similarity=0.527 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV 80 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|+.||+++|||||..|. |+|||+.||.+..+|+++
T Consensus 81 V~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~N~vH 115 (148)
T 2vu5_A 81 VDTARNMMGKTRPHEAA---PGTIRGDFGVTVAKNIIH 115 (148)
T ss_dssp HHHHHHHHCCSSTTTSC---TTSHHHHHCCCSTTCSEE
T ss_pred HHHHHHHhCCCCccccC---CCChHHHhcCCcccceEE
Confidence 99999999999999875 999999999999999986
No 17
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=6.9e-41 Score=251.00 Aligned_cols=116 Identities=31% Similarity=0.495 Sum_probs=113.2
Q ss_pred cceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcccc
Q 032064 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (148)
Q Consensus 27 ~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~n 106 (148)
..|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+|
T Consensus 4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 83 (153)
T 1s57_A 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVG 83 (153)
T ss_dssp CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETT
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEeccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 107 AITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 107 aV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
||+.||+++|||||..|. |+|||+.||.+..+|+++
T Consensus 84 aV~~~R~l~G~t~p~~A~---pgtIR~~fg~~~~~N~vH 119 (153)
T 1s57_A 84 VVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVH 119 (153)
T ss_dssp HHHHHHHHHCCSSTTTSC---TTSHHHHHCCBTTBCCEE
T ss_pred HHHHHHHHhCCCCccccC---CcchHHHhcCCCcCceEE
Confidence 999999999999999996 999999999999999986
No 18
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=8.8e-41 Score=249.96 Aligned_cols=116 Identities=33% Similarity=0.523 Sum_probs=113.1
Q ss_pred cceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcccc
Q 032064 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (148)
Q Consensus 27 ~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~n 106 (148)
..|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+||||++|+++|+|
T Consensus 2 ~~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 81 (151)
T 3bbb_A 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN 81 (151)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred CcceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCC
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 107 AITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 107 aV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
||+.||+++|||||..|+ |+|||+.||.+..+|+++
T Consensus 82 aV~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~N~vH 117 (151)
T 3bbb_A 82 VVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIH 117 (151)
T ss_dssp HHHHHHHHHCCSSGGGCC---TTSHHHHHCCBTTBCCEE
T ss_pred HHHHHHHHhCCCCcccCC---CCCcHHHhcCCcccceEE
Confidence 999999999999999987 999999999999999986
No 19
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=5.4e-41 Score=252.40 Aligned_cols=116 Identities=28% Similarity=0.450 Sum_probs=112.9
Q ss_pred cceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcccc
Q 032064 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (148)
Q Consensus 27 ~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~n 106 (148)
.+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+++|+|
T Consensus 8 ~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n 87 (157)
T 1xiq_A 8 HMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVD 87 (157)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTT
T ss_pred hhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEeccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 107 AITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 107 aV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
||++||+++|||||.+|. |+|||+.||.+..+|+++
T Consensus 88 aV~~~R~l~G~T~p~~A~---pgtIR~~fg~~~~~N~vH 123 (157)
T 1xiq_A 88 MVKQGRKLIGETNPLTSN---TGTIRGDFCLEVSKNVIH 123 (157)
T ss_dssp HHHHHHHHHCCSSTTTSC---TTSHHHHHCCBTTBCSEE
T ss_pred chHHHHHHcCCCCCCcCC---CCChHHHhCCCCCceeEE
Confidence 999999999999999985 999999999999999986
No 20
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-41 Score=254.00 Aligned_cols=118 Identities=25% Similarity=0.476 Sum_probs=107.5
Q ss_pred cccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcc
Q 032064 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (148)
Q Consensus 25 ~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g 104 (148)
++..|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+++|
T Consensus 10 ~~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg 89 (161)
T 3b54_A 10 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEG 89 (161)
T ss_dssp CCCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEES
T ss_pred ccccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEec
Confidence 46789999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 105 ENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 105 ~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
+|||+.||+++|||||..|. |+|||+.||.+..+|+++
T Consensus 90 ~naV~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~N~vH 127 (161)
T 3b54_A 90 KDVVRQGRTILGATNPLGSA---PGTIRGDFGIDLGRNVCH 127 (161)
T ss_dssp TTHHHHHHHHHCCSSGGGSC---TTSHHHHHCCBTTBCSEE
T ss_pred cChHHHHHHHhCCCCcccCC---CCChHHHhcCCCCCceEE
Confidence 99999999999999999976 999999999999999986
No 21
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=6.7e-41 Score=250.13 Aligned_cols=115 Identities=30% Similarity=0.500 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|+.||+++|||||..|. |+|||+.||.+..+|+++
T Consensus 81 V~~~R~l~G~t~p~~A~---pgtIR~~fg~~~~~N~vH 115 (149)
T 1u8w_A 81 VLTGRKIIGATNPAASE---PGTIRGDFAIDIGRNVIH 115 (149)
T ss_dssp HHHHHHHHCCSSTTTCC---TTSHHHHHCCSTTSCSEE
T ss_pred hHHHHHHhCCCCcccCC---CCCcHHHHCCCCcCceEE
Confidence 99999999999999985 999999999999999986
No 22
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.4e-40 Score=252.87 Aligned_cols=118 Identities=32% Similarity=0.501 Sum_probs=114.7
Q ss_pred cccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcc
Q 032064 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (148)
Q Consensus 25 ~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g 104 (148)
....|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+||||++|+++|
T Consensus 18 ~~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg 97 (169)
T 1zs6_A 18 TGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQG 97 (169)
T ss_dssp CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred hhhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEec
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 105 ENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 105 ~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
+|||+.||+++|||||..|. |+|||+.||.+..+|+++
T Consensus 98 ~~aV~~~R~l~G~t~p~~A~---pgtIR~~fg~~~~~N~vH 135 (169)
T 1zs6_A 98 LDVVRTSRALIGATNPADAP---PGTIRGDFCIEVGKNLIH 135 (169)
T ss_dssp TTHHHHHHHHHCCSSGGGSC---TTSHHHHHCCSGGGCSEE
T ss_pred CCchHHHHHHhCCCCcccCC---CCChHHHHcCCCcCceEE
Confidence 99999999999999999985 999999999999999986
No 23
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=1.9e-40 Score=251.05 Aligned_cols=118 Identities=33% Similarity=0.542 Sum_probs=113.3
Q ss_pred cccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcc
Q 032064 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (148)
Q Consensus 25 ~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g 104 (148)
++..|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+++|
T Consensus 5 ~~~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg 84 (164)
T 2az3_A 5 TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEG 84 (164)
T ss_dssp --CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred cCccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEcc
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 105 ENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 105 ~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
+|||+.||+++|||||..|. |+|||+.||.+..+|+++
T Consensus 85 ~~aV~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~N~vH 122 (164)
T 2az3_A 85 ADATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHNLIH 122 (164)
T ss_dssp TTHHHHHHHHHCCSSGGGSC---TTSHHHHHCCCSSSCSEE
T ss_pred ccHHHHHHHHhCCCCccccC---CCcchhhhcccccCceEE
Confidence 99999999999999999976 999999999999999986
No 24
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=1.6e-40 Score=249.56 Aligned_cols=116 Identities=26% Similarity=0.408 Sum_probs=112.7
Q ss_pred cceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcccc
Q 032064 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (148)
Q Consensus 27 ~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~n 106 (148)
.+|+|++|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+++|+|
T Consensus 8 ~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~n 87 (156)
T 3js9_A 8 HMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPE 87 (156)
T ss_dssp -CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEETT
T ss_pred chhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEeccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 107 AITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 107 aV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
||++||+++|||||.+|. |+|||+.||++..+|+++
T Consensus 88 aV~~~R~l~G~T~p~~A~---PgTIR~~fg~~~~~N~vH 123 (156)
T 3js9_A 88 AIKIGRNLVGLTSPVESA---AGTIRGDFGVVKNFNIVH 123 (156)
T ss_dssp HHHHHHHHHCCSSGGGSC---TTSHHHHHCCSGGGCCEE
T ss_pred hHHHHHHhcCCCCccccC---CCCHHHHhCCCCCceeEE
Confidence 999999999999999986 999999999999999985
No 25
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=1.8e-40 Score=250.34 Aligned_cols=116 Identities=32% Similarity=0.490 Sum_probs=112.8
Q ss_pred cceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcccc
Q 032064 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (148)
Q Consensus 27 ~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~n 106 (148)
..|+||+|||||++.++++|+||++|+++||+|+++|++++|+++|++||.+|+++|||++|++||+||||++|+++|+|
T Consensus 6 ~~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 85 (160)
T 2dxe_A 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRY 85 (160)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred cCCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccC
Confidence 36999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCcccccccCccc---ceee
Q 032064 107 AITDWRALIGPTDAKKAKISHPHSFLFLLVISFPF---SLEY 145 (148)
Q Consensus 107 aV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~---N~~~ 145 (148)
||++||+++|||||.+|. |+|||+.||.+..+ |+++
T Consensus 86 aV~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~~~~N~vH 124 (160)
T 2dxe_A 86 AVEVVRKMAGATDPKDAA---PGTIRGDFGLEVSDAICNVIH 124 (160)
T ss_dssp HHHHHHHHHCCSSGGGSC---TTSHHHHHCCCCSSSCCCSEE
T ss_pred HHHHHHHHhCCCCCCcCC---CCChHHHhcCCcccCcCceEE
Confidence 999999999999999985 99999999999999 9986
No 26
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=4.5e-41 Score=251.28 Aligned_cols=115 Identities=33% Similarity=0.468 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEccccH
Q 032064 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (148)
Q Consensus 28 ~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g~na 107 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na 81 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 81 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence 58999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 108 ITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 108 V~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|+.||+++|||||..|. |+|||+.||.+..+|+++
T Consensus 82 V~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~N~vH 116 (150)
T 1nb2_A 82 AATARQILGATNPSDAA---PGTIRGDFGVSAGRNAIH 116 (150)
T ss_dssp HHHHHHHHCCSSTTSSC---TTSHHHHSCSCSSSCSEE
T ss_pred HHHHHHHhCCCCcccCC---CCChHHHhcCCccceeEE
Confidence 99999999999999875 999999999999999986
No 27
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=2.3e-40 Score=254.06 Aligned_cols=119 Identities=33% Similarity=0.469 Sum_probs=114.1
Q ss_pred CcccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEc
Q 032064 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLE 103 (148)
Q Consensus 24 ~~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~ 103 (148)
.+...|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+
T Consensus 28 ~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 107 (182)
T 1w7w_A 28 PEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWE 107 (182)
T ss_dssp --CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred ccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEe
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceee
Q 032064 104 KENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEY 145 (148)
Q Consensus 104 g~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~ 145 (148)
|+|||++||+++|||||..|. |+|||+.||.+..+|+++
T Consensus 108 G~naV~~~R~l~G~T~p~~A~---PgTIR~~fg~~~~~N~vH 146 (182)
T 1w7w_A 108 GEGVITYGRKLIGATDPQKSA---PGTIRGDLAVVVGRNIIH 146 (182)
T ss_dssp STTHHHHHHHHHCCSSGGGSC---TTSHHHHHCCSGGGCCEE
T ss_pred cccHHHHHHHHhCCCCCCCCC---CCChHHHhCCCccceeEE
Confidence 999999999999999999995 999999999999999986
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=6.3e-40 Score=252.99 Aligned_cols=118 Identities=26% Similarity=0.394 Sum_probs=114.1
Q ss_pred cccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHH-----HhcCCCcHHHHHHhhhcCCEEE
Q 032064 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYA-----EHSSRSFFSSLIKYMTSGPVLA 99 (148)
Q Consensus 25 ~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~-----~~~~~~~f~~lv~~m~sGpvva 99 (148)
++..|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||. +|++++||++|++||+||||++
T Consensus 23 ~~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvva 102 (190)
T 4dz6_A 23 SMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFT 102 (190)
T ss_dssp CTTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEE
T ss_pred cchhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEE
Confidence 45579999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEccccHHHHHHHHhCCCChhhhhhcCCCCcccccccCc----------ccceee
Q 032064 100 MVLEKENAITDWRALIGPTDAKKAKISHPHSFLFLLVISF----------PFSLEY 145 (148)
Q Consensus 100 l~l~g~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~----------~~N~~~ 145 (148)
|+|+|+|||++||+++|||||.+|. |+|||+.||.+. .+|+++
T Consensus 103 mvleG~naV~~~R~l~GpTdP~~A~---PgTIRg~fg~~~~~~a~~~~~~~~N~VH 155 (190)
T 4dz6_A 103 FVVEGVESIEVVRKLCGATEPKLAI---PGTIRGDFSYHSFKYSNEKGFSIYNVIH 155 (190)
T ss_dssp EEEEEETHHHHHHHHHCCSSGGGSC---TTSHHHHHCCCCHHHHHHHTCCCCCSEE
T ss_pred EEEecCCHHHHHHHHcCCCChhhcC---CCChHHHhcCChhhhccccccccceeEE
Confidence 9999999999999999999999995 999999999999 999985
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=2.7e-37 Score=239.43 Aligned_cols=117 Identities=32% Similarity=0.474 Sum_probs=112.3
Q ss_pred ccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHH-------------H---------------
Q 032064 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFY-------------A--------------- 77 (148)
Q Consensus 26 ~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y-------------~--------------- 77 (148)
+..|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++|| .
T Consensus 13 ~~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 92 (195)
T 1xqi_A 13 MPVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKI 92 (195)
T ss_dssp -CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred chhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhh
Confidence 456999999999999999999999999999999999999999999999999 8
Q ss_pred -----HhcCCCcHHHHHHhhhcCCEEEEEEccccHHHHHHHHhCCCChhhhhhcCCCCcccccccCccc----------c
Q 032064 78 -----EHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPF----------S 142 (148)
Q Consensus 78 -----~~~~~~~f~~lv~~m~sGpvval~l~g~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~----------N 142 (148)
+|.+++||++|++||+||||++|+++|+|||++||+++|||||.+|. |+|||+.||.+..+ |
T Consensus 93 ~~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~---pgTIRg~fg~~~~~~~~~~~~~~~N 169 (195)
T 1xqi_A 93 GTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAP---PGTIRGDYSIDSPDLAAEEGRVVFN 169 (195)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSC---TTSHHHHHCCCCHHHHHHTTSCCCC
T ss_pred ccccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCC---CCchhHhhcCchhhhccccccccce
Confidence 89999999999999999999999999999999999999999999995 99999999999999 9
Q ss_pred eee
Q 032064 143 LEY 145 (148)
Q Consensus 143 ~~~ 145 (148)
+++
T Consensus 170 ~vH 172 (195)
T 1xqi_A 170 LVH 172 (195)
T ss_dssp SEE
T ss_pred EEE
Confidence 885
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.93 E-value=5.8e-26 Score=189.31 Aligned_cols=91 Identities=13% Similarity=0.325 Sum_probs=87.4
Q ss_pred cccceeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHHHHhcCCCcHHHHHHhhhcCCEEEEEEcc
Q 032064 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (148)
Q Consensus 25 ~~~~e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y~~~~~~~~f~~lv~~m~sGpvval~l~g 104 (148)
.+..|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|+ ++|++||+|||+++|+++|
T Consensus 232 k~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG 306 (352)
T 3bh7_B 232 KSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNG 306 (352)
T ss_dssp CSCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEES
T ss_pred cccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEEC
Confidence 46679999999999999888999999999999999999999999999999999997 6799999999999999999
Q ss_pred ccHHHHHHHHhCCCCh
Q 032064 105 ENAITDWRALIGPTDA 120 (148)
Q Consensus 105 ~naV~~~r~l~Gptdp 120 (148)
+|||+.||+++|+|+|
T Consensus 307 ~~av~~~R~l~g~t~p 322 (352)
T 3bh7_B 307 DGAVEVCQLIVNEIFN 322 (352)
T ss_dssp TTHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHhcCCCC
Confidence 9999999999999996
No 31
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=69.69 E-value=3.9 Score=27.04 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=36.6
Q ss_pred eeEEEEEcCCcccCcchhHHHHHHHHcCceEeEEEEEeeCHHHHHhHH
Q 032064 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFY 76 (148)
Q Consensus 29 e~Tl~lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~e~a~~~y 76 (148)
...+++++|..+.. +.+|.+.|.+..-.|.++. .++.++|+++.
T Consensus 4 ~~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~--~ld~~~AqRiv 47 (87)
T 3p04_A 4 QSTIVPVELHSFED--AQVIGGAFRDGDAVVFDMS--LLSREEARRIV 47 (87)
T ss_dssp CCSCEEEECSSGGG--HHHHHHHHHTTCCEEEECT--TSCHHHHHHHH
T ss_pred CcEEEEEecCcHHH--HHHHHHHHHCCCEEEEECC--CCCHHHHHHHH
Confidence 35678999999965 7899999999988888887 46888888875
No 32
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=36.56 E-value=24 Score=24.42 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=25.6
Q ss_pred eeCHHHHHhHHHHhc------CCCcHHHHHHhhhcCCE
Q 032064 66 RLDEDGAKTFYAEHS------SRSFFSSLIKYMTSGPV 97 (148)
Q Consensus 66 ~ls~e~a~~~y~~~~------~~~~f~~lv~~m~sGpv 97 (148)
.+|.+++.++..... |+-.|.+.++.|++||.
T Consensus 117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 478999999987543 35679999999999984
No 33
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A
Probab=29.02 E-value=35 Score=28.82 Aligned_cols=50 Identities=8% Similarity=0.037 Sum_probs=32.7
Q ss_pred hhcCCEEEEEEc-c--ccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeecc
Q 032064 92 MTSGPVLAMVLE-K--ENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYFQ 147 (148)
Q Consensus 92 m~sGpvval~l~-g--~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~~ 147 (148)
+-.-|++++=+. | .+|..-.+-+-||.+..-+. +|+++|...++|+-||+
T Consensus 120 ~gaep~~~vn~g~g~~~ea~d~veY~n~~~~t~w~~------lRa~~G~~eP~~vkywe 172 (496)
T 2vrq_A 120 LGCEPYISGNVGSGTVQEMSEWVEYITFDGESPMAN------WRRENGREKPWRIKYWG 172 (496)
T ss_dssp HTCEEEEEECCSSCCHHHHHHHHHHHHCCSBSHHHH------HHHHTTCCSCCCCCEEE
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHhCCCCCChHHH------HHHHcCCCCCCCceEEE
Confidence 334466655542 2 34555555555666644343 79999999999999997
No 34
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Probab=21.09 E-value=52 Score=28.15 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=34.4
Q ss_pred HHhhhcCCEEEEEEcc---ccHHHHHHHHhCCCChhhhhhcCCCCcccccccCcccceeecc
Q 032064 89 IKYMTSGPVLAMVLEK---ENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSLEYFQ 147 (148)
Q Consensus 89 v~~m~sGpvval~l~g---~naV~~~r~l~Gptdp~~a~~~~P~sLRa~fG~~~~~N~~~~~ 147 (148)
.+-+-.-|++++=+.. ++|.+-++-+.|+.+..-++ +|+..|...+.|+-||+
T Consensus 133 ~e~~gaep~~~vN~G~g~~~ea~d~veY~n~~~~t~~~~------lRa~~G~~~P~~vkywe 188 (504)
T 3ug3_A 133 CREIGAEPYISINMGTGTLDEALHWLEYCNGKGNTYYAQ------LRRKYGHPEPYNVKFWG 188 (504)
T ss_dssp HHHHTCEEEEECCCSSCCHHHHHHHHHHHHCCSSCHHHH------HHHHTTCCSCCCCCEEE
T ss_pred HHHhCCeEEEEEECCCCCHHHHHHHHHHhcCCCCChHHH------HHHHcCCCCCCCccEEE
Confidence 3333344555543321 35666666666776544443 89999999999999996
No 35
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=20.26 E-value=1.7e+02 Score=22.12 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=27.8
Q ss_pred cccceeEEEEEcCC-cccCcchhHHHHHHHHcCceEeEEEEEeeCH
Q 032064 25 SVEKEKTLAMIKPD-GLSGNYTDEIKKVILESGFSILRERVVRLDE 69 (148)
Q Consensus 25 ~~~~e~Tl~lIKPd-a~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~ 69 (148)
..-...++++.+|. .-.. ...+..+.|++.|+.+...-.+++.+
T Consensus 17 ~~l~g~~vlvtr~~~~~~~-~~~~l~~~L~~~G~~~~~~P~i~i~~ 61 (286)
T 1jr2_A 17 IEGRHMKVLLLKDAKEDDC-GQDPYIRELGLYGLEATLIPVLSFEF 61 (286)
T ss_dssp -----CEEEEEESSCCCBT-TBCHHHHHHHTTTCEEEEEECEEEEE
T ss_pred hhhcCCEEEEEcCCCCCCC-CCcHHHHHHHHCCCceEEEeeEEEec
Confidence 44456788999986 3210 01577889999999988877766653
Done!