RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032064
(148 letters)
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 99.7 bits (248), Expect = 3e-28
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E+T +KPDG+ EI + GF ++ ++V+ E+ + YAE R F+
Sbjct: 3 AHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYG 62
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
L+KYM SGPV+AMV + + + RALIG T+ A
Sbjct: 63 RLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP 100
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 96.6 bits (240), Expect = 4e-27
Identities = 36/96 (37%), Positives = 52/96 (54%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + +R E+ K Y + R FF L
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
+KYM SGPV+AMV E N + R ++G T+ +K
Sbjct: 64 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK 99
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 97.1 bits (241), Expect = 6e-27
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 33/129 (25%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH--------- 79
EKTL ++KPD ++ DEI ++G I+ ++V+ + + FY
Sbjct: 3 EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQ 62
Query: 80 ------------------------SSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALI 115
R +L+KYMTSGP + MVL+ A+ R L+
Sbjct: 63 KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLV 122
Query: 116 GPTDAKKAK 124
GPT A
Sbjct: 123 GPTSPHSAP 131
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 95.1 bits (236), Expect = 2e-26
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T M+KPDG+ +I + G ++ + +R+DE+ A YAEH + FF L
Sbjct: 3 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
+ ++TSGPV AMV E +A R L+G TDA+ A
Sbjct: 63 VSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA 98
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 93.9 bits (233), Expect = 4e-26
Identities = 39/95 (41%), Positives = 57/95 (60%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL++IKPDGL +I E G + R+ L + A+ FYA H +R FF L
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 123
+++M SGPV+ MVLE ENA+ R ++G T+ +A
Sbjct: 63 VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQA 97
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 92.0 bits (228), Expect = 3e-25
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFF 85
V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH R FF
Sbjct: 1 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFF 60
Query: 86 SSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
L+ ++TSGPV+AMV E + + R +IG T+ +
Sbjct: 61 GGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA 99
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 91.3 bits (226), Expect = 5e-25
Identities = 36/97 (37%), Positives = 50/97 (51%)
Query: 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87
KE+T M+KPDG+ N E+ K G + +++ + +DGA YAE FF
Sbjct: 1 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 60
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
L+ TSGPV AMV E NA R ++G T+ A
Sbjct: 61 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAA 97
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 90.5 bits (224), Expect = 1e-24
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
EK+ MIKPDG+ I K + G+ ++ +++ E+ K Y E S + FF +L
Sbjct: 2 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPH 129
+ Y++ GPV+AMV E + + R LIG T+ +
Sbjct: 62 VAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIR 102
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 90.5 bits (224), Expect = 1e-24
Identities = 37/98 (37%), Positives = 53/98 (54%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E E+T IKPDG+ EI GF ++ +V+ + A+ Y + R FF+
Sbjct: 2 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFN 61
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
L +++SGPV+AMV E E IT R LIG TD +K+
Sbjct: 62 GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSA 99
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 89.7 bits (222), Expect = 2e-24
Identities = 32/98 (32%), Positives = 57/98 (58%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
+E+TL +KPDG+ ++ + GF+++ ++++ E Y + + F+
Sbjct: 4 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYP 63
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
+LI+YM+SGPV+AMV E N + RA+IG TD+ +A
Sbjct: 64 ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAA 101
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 88.9 bits (220), Expect = 5e-24
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
+ E+T M+KPDG+ EI + GF ++ ++ + ++ A+ Y + S++SFF
Sbjct: 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFP 63
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSFLFLLVISFPFSL 143
+LI+Y+TSGPV+ M E + R LIG TD +A+ P + L + ++
Sbjct: 64 NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNI 117
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 88.5 bits (219), Expect = 6e-24
Identities = 36/96 (37%), Positives = 56/96 (58%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPDG+ EI GF I +++++ ++ A+ YAEH + FF L
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
++++TSGPV+AMVLE + + R ++G T K A
Sbjct: 62 VRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDAL 97
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 87.8 bits (217), Expect = 1e-23
Identities = 36/104 (34%), Positives = 53/104 (50%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E E+TL +IKPD + EI + G I+ +++ +D + A+ Y EH + FF
Sbjct: 1 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFK 60
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHS 130
+LI Y+T PV+ MVLE A+ R + G TD K A
Sbjct: 61 ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRG 104
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 85.1 bits (210), Expect = 1e-22
Identities = 37/96 (38%), Positives = 54/96 (56%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL +IKPDG+ EI I G +I ++ + + A YAEH + FF SL
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
++++TSGPV+A ++E AI R L G TD +A
Sbjct: 62 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAA 97
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 82.0 bits (202), Expect = 2e-21
Identities = 33/96 (34%), Positives = 57/96 (59%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPDG+ E+ + GF++ +++ ++ A+ Y + SS+SFFS L
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
+ Y+ SGPV+AM+ E +N + R +IG T+ ++
Sbjct: 62 VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE 97
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 72.0 bits (176), Expect = 9e-18
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 30 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDG-AKTFYAEHSSRSFFSSL 88
+TL +IKPD + EI I + F I+ + + Y EHS +S+F+
Sbjct: 2 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDN 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPT 118
+M SGP++++V E +AI+ R L G
Sbjct: 62 CDFMVSGPIISIVYEGTDAISKIRRLQGNI 91
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular
stomatitis indiana virus [TaxId: 11277]}
Length = 65
Score = 26.1 bits (57), Expect = 0.54
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVI 52
S E KTL + P+GLSG + I
Sbjct: 9 SDEHGKTLRLTLPEGLSGEQKSQWMLTI 36
>d1ulib_ d.17.4.4 (B:) Biphenyl dioxygenase small subunit BphA2
{Rhodococcus sp. (strain RHA1) [TaxId: 101510]}
Length = 177
Score = 27.1 bits (59), Expect = 0.61
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 38 DGLSGNYTDEIKKVILESGFSILRERVVRLDED 70
D +G D +++ E+GF + +R + +D+
Sbjct: 135 DIFAGERKDILRRTGSEAGFEL-AKRTILIDQS 166
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 25.1 bits (53), Expect = 3.8
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 26 VEKEKTLAMIKPDGLSGNYT---DEIKKVI---LESGFSILRERVVRLDEDGAKTFYAEH 79
V++ ++ D G+ +EI+K + ++ SI+ ++V + E
Sbjct: 388 VKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD-SIVHKKVQEMKEMSRNAVVDGG 446
Query: 80 SSRSFFSSLIKYMT 93
SS LI +T
Sbjct: 447 SSLISVGKLIDDIT 460
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine
synthase, catalytic domain {Yeast (Saccharomyces
kluyveri) [TaxId: 4934]}
Length = 322
Score = 25.0 bits (54), Expect = 4.0
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 33 AMI---KPDGLSGNYTDEIKKVILESGFSILRERVVRLDE 69
+MI DGLS NY + +E+GF +L + ++ D
Sbjct: 276 SMIFIPSKDGLSHNYYEYSSPEEIENGFKVLLQAIINYDN 315
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.393
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 539,682
Number of extensions: 22625
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 23
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)