BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032065
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F5O|A Chain A, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|B Chain B, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|C Chain C, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|D Chain D, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|E Chain E, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|F Chain F, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|G Chain G, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|H Chain H, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
Length = 148
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 37 IQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTV-NSFTGKSKASVDLT 95
I V G + C + + G H G ATL+D + + + + G SVD+
Sbjct: 28 ITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMN 87
Query: 96 ISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKN 142
I+ AK+ E++ I A V+ L V++ K G+LIA G++
Sbjct: 88 ITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRH 134
>pdb|2H4U|A Chain A, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|B Chain B, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|C Chain C, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|D Chain D, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
Length = 145
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 62 GNWHAGAIATLIDGLGALTV-NSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGK 120
G H G ATL+D + + + + G SVD+ I+ AK+ E++ I A V+
Sbjct: 58 GTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKT 117
Query: 121 LTSVLVEVKRKGNGELIALGKN 142
L V++ K G+LIA G++
Sbjct: 118 LAFTSVDLTNKATGKLIAQGRH 139
>pdb|2CY9|A Chain A, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
pdb|2CY9|B Chain B, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
Length = 140
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 62 GNWHAGAIATLIDGLGALTVN-SFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGK 120
G H G ATL+D + + + G SVD I+ AKI EE+ I A ++
Sbjct: 53 GTLHGGLTATLVDSISTXALXCTERGAPGVSVDXNITYXSPAKIGEEIVITAHILKQGKT 112
Query: 121 LTSVLVEVKRKGNGELIALGKN 142
L V++ K G+LIA G++
Sbjct: 113 LAFASVDLTNKTTGKLIAQGRH 134
>pdb|2F0X|A Chain A, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|B Chain B, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|C Chain C, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|D Chain D, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|E Chain E, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|F Chain F, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|G Chain G, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|H Chain H, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
Length = 148
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 62 GNWHAGAIATLIDGLGALTV-NSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGK 120
G H G ATL+D + + + G SVD I+ AK+ E++ I A V+
Sbjct: 53 GTLHGGLTATLVDNISTXALLCTERGAPGVSVDXNITYXSPAKLGEDIVITAHVLKQGKT 112
Query: 121 LTSVLVEVKRKGNGELIALGKN 142
L V++ K G+LIA G++
Sbjct: 113 LAFTSVDLTNKATGKLIAQGRH 134
>pdb|4ICH|A Chain A, Crystal Structure Of A Putative Tetr Family
Transcriptional Regulator From Saccharomonospora Viridis
Dsm 43017
pdb|4ICH|B Chain B, Crystal Structure Of A Putative Tetr Family
Transcriptional Regulator From Saccharomonospora Viridis
Dsm 43017
Length = 311
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 34 FQGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVD 93
+Q I A +RTG + F DQD + A ++ LIDGLG + TGK SVD
Sbjct: 243 YQTI-AXTIRTGQKQGVF------RDQDADELATRLSALIDGLG---IQVLTGKRGCSVD 292
>pdb|3BP8|A Chain A, Crystal Structure Of MlcEIIB COMPLEX
pdb|3BP8|B Chain B, Crystal Structure Of MlcEIIB COMPLEX
Length = 406
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 59 DQDGNWHAGAIATLIDGLGALT---VNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVV 115
DQ +AGA+ LID LG ++ ++ + AS+ + A + +E+EI K
Sbjct: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI--KEA 68
Query: 116 GSRGK 120
G+RG+
Sbjct: 69 GNRGR 73
>pdb|1Z6R|A Chain A, Crystal Structure Of Mlc From Escherichia Coli
pdb|1Z6R|B Chain B, Crystal Structure Of Mlc From Escherichia Coli
pdb|1Z6R|C Chain C, Crystal Structure Of Mlc From Escherichia Coli
pdb|1Z6R|D Chain D, Crystal Structure Of Mlc From Escherichia Coli
Length = 406
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 59 DQDGNWHAGAIATLIDGLGALT---VNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVV 115
DQ +AGA+ LID LG ++ ++ + AS+ + A + +E+EI K
Sbjct: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEXLEAHLVQELEI--KEA 68
Query: 116 GSRGK 120
G+RG+
Sbjct: 69 GNRGR 73
>pdb|3E29|A Chain A, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|B Chain B, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|C Chain C, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|D Chain D, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a
Length = 144
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 65 HAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSV 124
H G +ATL+D G V TG + D + Y+ ++ E +V+ + +
Sbjct: 54 HGGILATLVDAAGDYAVALKTGHPVPTXDXHVD-YHRVATPGDLRAEGQVIHFGKRFATA 112
Query: 125 LVEVKRKGNGELIALGK 141
V +G L+A G+
Sbjct: 113 HARVL-DXDGNLVASGR 128
>pdb|3PSI|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(239-1451)
Length = 1219
Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 84 FTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGEL 136
FT +K ++D T+ YYS ++ + +I KV K V + KG E+
Sbjct: 331 FTSNTKLAID-TVQKYYSLELSKNTKIREKVRSDFSKYYLADVVLTAKGKKEI 382
>pdb|3PSF|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(236-1259)
Length = 1030
Score = 26.2 bits (56), Expect = 6.4, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 84 FTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGEL 136
FT +K ++D T+ YYS ++ + +I KV K V + KG E+
Sbjct: 334 FTSNTKLAID-TVQKYYSLELSKNTKIREKVRSDFSKYYLADVVLTAKGKKEI 385
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
Length = 178
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 77 GALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGN-GE 135
G T N GKS S T+ + EI VV RG+ + + K N
Sbjct: 80 GKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAA 139
Query: 136 LIALGKNW 143
+++GK W
Sbjct: 140 QVSIGKQW 147
>pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed
17-beta- Estradiol
Length = 327
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 110 IEAKVVGSRGKLTSVLVEVKRKGNGELIALG 140
+E VVG+ L + L ++KR+G+G ++ G
Sbjct: 111 LEVNVVGTVRMLQAFLPDMKRRGSGRVLVTG 141
>pdb|2HBO|A Chain A, Crystal Structure Of A Thioesterase Superfamily Protein
(Cc_3309) From Caulobacter Vibrioides At 1.85 A
Resolution
Length = 158
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 32/81 (39%)
Query: 44 TGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAK 103
G R F + H + GN H G + + D ++ S +V L AK
Sbjct: 41 PGQARLAFRVEEHHTNGLGNCHGGXLXSFADXAWGRIISLQKSYSWVTVRLXCDFLSGAK 100
Query: 104 IQEEVEIEAKVVGSRGKLTSV 124
+ + VE E +++ L +V
Sbjct: 101 LGDWVEGEGELISEEDXLFTV 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,944,243
Number of Sequences: 62578
Number of extensions: 139643
Number of successful extensions: 409
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 27
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)