BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032065
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P34419|YLZ6_CAEEL Putative esterase F42H10.6 OS=Caenorhabditis elegans GN=F42H10.6
PE=1 SV=2
Length = 169
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 35 QGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVN-SFTGKSKASVD 93
+ + VE+ L C V+ + G H G ATL D + A V + K ASV+
Sbjct: 42 EDVYPVEVTKSKLVCEMVVQHQHLNSKGTLHGGQTATLTDVITARAVGVTVKDKGMASVE 101
Query: 94 LTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWM 144
L +S K+ + +EI A V+ + E +RK +G++ A GK+ +
Sbjct: 102 LAVSYLLPVKVGDVLEITAHVLKVGRTMAFTDCEFRRKSDGKMSAKGKHTL 152
>sp|Q9CQR4|ACO13_MOUSE Acyl-coenzyme A thioesterase 13 OS=Mus musculus GN=Acot13 PE=1 SV=1
Length = 140
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 47 LRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVN-SFTGKSKASVDLTISLYYSAKIQ 105
L C + ++ G H G ATL+D + + + + G SVD+ I+ AKI
Sbjct: 38 LICEMKVEEQHTNKLGTLHGGLTATLVDSISTMALMCTERGAPGVSVDMNITYMSPAKIG 97
Query: 106 EEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKN 142
EE+ I A ++ L V++ K G+LIA G++
Sbjct: 98 EEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRH 134
>sp|Q5R833|ACO13_PONAB Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1
Length = 140
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 37 IQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTV-NSFTGKSKASVDLT 95
I V G + C + + G H G ATL+D + + + + G SVD+
Sbjct: 28 ITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMN 87
Query: 96 ISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKN 142
I+ AK+ E++ I A V+ L V++ K G+LIA G++
Sbjct: 88 ITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRH 134
>sp|Q9NPJ3|ACO13_HUMAN Acyl-coenzyme A thioesterase 13 OS=Homo sapiens GN=ACOT13 PE=1 SV=1
Length = 140
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 37 IQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTV-NSFTGKSKASVDLT 95
I V G + C + + G H G ATL+D + + + + G SVD+
Sbjct: 28 ITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMN 87
Query: 96 ISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKN 142
I+ AK+ E++ I A V+ L V++ K G+LIA G++
Sbjct: 88 ITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRH 134
>sp|O28020|Y2264_ARCFU Putative esterase AF_2264 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_2264 PE=3 SV=1
Length = 154
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 40 VELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLY 99
+E++ G+ + V+ + H G I +L D AL NS GK +++++I+
Sbjct: 41 LEMKEGYAKVEMVVKKEHLNAANVCHGGIIFSLADLAFALASNSH-GKLALAIEVSITYM 99
Query: 100 YSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGK 141
+A E++ EAK V K + L+EVK N +LIAL K
Sbjct: 100 KAAYEGEKLVAEAKEVNLGNKTATYLMEVKNSAN-KLIALAK 140
>sp|P53716|YBJ5_CANAW Uncharacterized protein CAWG_04269, mitochondrial OS=Candida
albicans (strain WO-1) GN=CAWG_04269 PE=2 SV=2
Length = 223
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 23 GVECSELEAITFQGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLID-GLGALTV 81
G + E++ I F ++ + G L ++ + QDG H G ++T++D GL +
Sbjct: 87 GPDLMEIDPIVF-----LDEKNGELTSFYHLGDKLISQDGQIHNGIVSTILDEGLCSAGF 141
Query: 82 NSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGK 120
K + L+I A Q V + AKV ++G+
Sbjct: 142 PLLPSKKGVTASLSIDFKNQAPPQSTVVLHAKVKEAKGR 180
>sp|P87304|YB22_SCHPO Putative esterase C31F10.02 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC31F10.02 PE=3 SV=1
Length = 161
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 24 VECSELEAITFQGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNS 83
V + +A IQ + GF+ C + H ++ GN H G IA L D G+L + S
Sbjct: 22 VNTNGFDAHVVSDIQIISAVPGFVECSLKLQKHHLNRMGNLHGGCIAALTDLGGSLALAS 81
Query: 84 ---FTGKSKASVDLTISLYYS-AKIQEEVEIEAKV--VGSRGKLTSV 124
F S S+D+ + S + + + AK +GS TSV
Sbjct: 82 RGLFI--SGVSIDMNQTFLQSGGTLGSSILLHAKCDRLGSNIAFTSV 126
>sp|P20378|Y1336_HALSA Putative esterase VNG_1336C OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_1336C PE=3 SV=1
Length = 151
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 32 ITFQGIQAVELRTGFLRCYFVIPIH-----AADQDGNWHAGAIATLIDGLGALTVNSFTG 86
++F G+ + G +R IP H +G+ H G ATLID G L V S
Sbjct: 23 LSFLGVSVEDASDGEMRLR--IPYHEKLTNHGPGEGDVHGGIAATLIDTAGGLAVRSALP 80
Query: 87 K----SKASVDLTISLYYSAK 103
K + A++DL +S A+
Sbjct: 81 KPVAANVATIDLNVSYLRPAR 101
>sp|Q1QN43|RPOC_NITHX DNA-directed RNA polymerase subunit beta' OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=rpoC PE=3 SV=1
Length = 1399
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 12 ASIKMLERTSKGVECSELEAITFQGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIAT 71
A+ K+L + + +E S ++ I+ GIQ V++R+ L C V I + G
Sbjct: 848 ATNKVLIKRNTLMEESHVDQISRAGIQEVKIRSA-LTCELVNGICGKCYGRDLARGTPVN 906
Query: 72 LIDGLGALTVNSFTGKSKASVDLTISLYY---SAKIQEEVEIEAKVVGSRGKLTSVLVEV 128
+ +G + S + LT+ ++ +A++ E+ IE+ GK+T +
Sbjct: 907 HGEAVGVIAAQSI---GEPGTQLTMRTFHIGGAAQLNEQSVIESNF---DGKITIRNKAI 960
Query: 129 KRKGNGELIALGKNWMTS 146
R G G L+A+ +N + +
Sbjct: 961 ARNGEGHLVAMVRNMVVA 978
>sp|Q3IYN1|SECA_RHOS4 Protein translocase subunit SecA OS=Rhodobacter sphaeroides (strain
ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=secA PE=3
SV=1
Length = 908
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 35/176 (19%)
Query: 1 MRMKEDDDALQASIKMLERTSKGVECSELEAITFQ-------------GIQAVELRTGFL 47
MR + D L +I+ E S E L ++TFQ G A E F+
Sbjct: 335 MRGRRLSDGLHQAIEAKEGVSIQPENVTLASVTFQNYFRLYEKLGGMTGTAATEAEE-FM 393
Query: 48 RCYFV--------IPIHAADQ-DGNW------HAGAIATLID----GLGALTVNSFTGKS 88
Y + P+ AD+ D + H G +A++ D G L + KS
Sbjct: 394 EIYGLGVVEVPTNRPVARADEHDAVYRTAREKHDGIVASIKDAHERGQPILVGTTSIDKS 453
Query: 89 KASVDL--TISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKN 142
+A DL T + ++ + E EA++V GKL +V + G G I LG N
Sbjct: 454 EALSDLLKTAGIPHNVLNARQHEQEAQIVADAGKLGAVTIATNMAGRGTDIQLGGN 509
>sp|Q5SPL2|PHF12_MOUSE PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=2 SV=1
Length = 1003
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 78 ALTVNSFTGKSKASVDLTISLYYSAKIQEEVEI 110
ALTV SF S A VDLT SL + E+EI
Sbjct: 709 ALTVPSFPANSTAMVDLTNSLRAFMDVNGEIEI 741
>sp|Q96QT6|PHF12_HUMAN PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=1 SV=2
Length = 1004
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 78 ALTVNSFTGKSKASVDLTISLYYSAKIQEEVEI 110
ALTV SF S A VDLT SL + E+EI
Sbjct: 710 ALTVPSFPANSTAMVDLTNSLRAFMDVNGEIEI 742
>sp|Q12SB8|SECA_SHEDO Protein translocase subunit SecA OS=Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013) GN=secA PE=3
SV=1
Length = 907
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 93 DLTISLYYSAKIQEEV------EIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNW 143
+L SL +AKI V E EA++V G+ +V + G G I LG NW
Sbjct: 463 ELLASLLKNAKIPHSVLNAKFHEKEAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNW 519
>sp|A3QIL3|SECA_SHELP Protein translocase subunit SecA OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=secA PE=3 SV=1
Length = 907
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 93 DLTISLYYSAKIQEEV------EIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNW 143
+L S+ AKI EV E EA++V G+ +V + G G I LG NW
Sbjct: 463 ELLHSMLKKAKIPHEVLNAKFHEREAEIVAQAGRSGAVTIATNMAGRGTDIVLGGNW 519
>sp|Q3SSX9|RPOC_NITWN DNA-directed RNA polymerase subunit beta' OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=rpoC PE=3
SV=1
Length = 1399
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 16 MLERTSKGVECSELEAITFQGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDG 75
++ER + +E S ++ I+ GIQ V++R+ L C + I + G +
Sbjct: 853 LIERNTL-MEESHVDQISKAGIQEVKIRSA-LTCELINGICGKCYGRDLARGTPVNHGEA 910
Query: 76 LGALTVNSFTGKSKASVDLTISLYY---SAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKG 132
+G + S + LT+ ++ +A+I E+ IE+ GK+T + R G
Sbjct: 911 VGVIAAQSI---GEPGTQLTMRTFHIGGAAQINEQSVIESNF---DGKITIRNKAIARNG 964
Query: 133 NGELIALGKNWMTS 146
G L+A+ +N + +
Sbjct: 965 EGHLVAMVRNMVVA 978
>sp|C7FF04|PPO3_AGABI Polyphenol oxidase 3 OS=Agaricus bisporus GN=PPO3 PE=1 SV=1
Length = 576
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 86 GKSKASVDLTISLYYSAKIQEEVE---IEAKVVGSRGKLTSVLVEVK 129
G+ D + LY +++E ++ I KVV + G+LTS++VE+K
Sbjct: 498 GQHADHEDDAVPLYEPTRVKEYLKKRKIGCKVVSAEGELTSLVVEIK 544
>sp|A9KY37|SECA_SHEB9 Protein translocase subunit SecA OS=Shewanella baltica (strain
OS195) GN=secA PE=3 SV=1
Length = 908
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 93 DLTISLYYSAKIQEEV------EIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNW 143
+L L KI EV E EA++V G+ SV + G G I LG NW
Sbjct: 463 ELLARLMVQEKIPHEVLNAKFHEREAEIVAQAGRTGSVTIATNMAGRGTDIVLGGNW 519
>sp|A6WID9|SECA_SHEB8 Protein translocase subunit SecA OS=Shewanella baltica (strain
OS185) GN=secA PE=3 SV=1
Length = 908
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 93 DLTISLYYSAKIQEEV------EIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNW 143
+L L KI EV E EA++V G+ SV + G G I LG NW
Sbjct: 463 ELLARLMVQEKIPHEVLNAKFHEREAEIVAQAGRTGSVTIATNMAGRGTDIVLGGNW 519
>sp|A3CZM9|SECA_SHEB5 Protein translocase subunit SecA OS=Shewanella baltica (strain
OS155 / ATCC BAA-1091) GN=secA PE=3 SV=1
Length = 908
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 93 DLTISLYYSAKIQEEV------EIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNW 143
+L L KI EV E EA++V G+ SV + G G I LG NW
Sbjct: 463 ELLARLMVQEKIPHEVLNAKFHEREAEIVAQAGRTGSVTIATNMAGRGTDIVLGGNW 519
>sp|B9KPP0|SECA_RHOSK Protein translocase subunit SecA OS=Rhodobacter sphaeroides (strain
KD131 / KCTC 12085) GN=secA PE=3 SV=1
Length = 908
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 35/176 (19%)
Query: 1 MRMKEDDDALQASIKMLERTSKGVECSELEAITFQ-------------GIQAVELRTGFL 47
MR + D L +I+ E S E L ++TFQ G A E F+
Sbjct: 335 MRGRRLSDGLHQAIEAKEGVSIQPENVTLASVTFQNYFRLYEKLGGMTGTAATEAEE-FM 393
Query: 48 RCYFV--------IPIHAADQ-DGNW------HAGAIATLID----GLGALTVNSFTGKS 88
Y + P+ AD+ D + H G +A++ D G L + KS
Sbjct: 394 EIYGLGVVEVPTNRPVARADEHDAVYRTAREKHDGIVASIKDAHERGQPILVGTTSIDKS 453
Query: 89 KASVDLTIS--LYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKN 142
+A DL S + ++ + E EA++V GKL +V + G G I LG N
Sbjct: 454 EALSDLLKSAGIPHNVLNARQHEQEAQIVADAGKLGAVTIATNMAGRGTDIQLGGN 509
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,798,544
Number of Sequences: 539616
Number of extensions: 1787977
Number of successful extensions: 5806
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 5776
Number of HSP's gapped (non-prelim): 54
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)