Query 032065
Match_columns 148
No_of_seqs 202 out of 1102
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 09:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10293 acyl-CoA esterase; Pr 100.0 8.3E-29 1.8E-33 174.2 16.4 110 35-146 24-135 (136)
2 PRK10254 thioesterase; Provisi 100.0 2E-28 4.3E-33 172.4 17.5 116 26-146 18-135 (137)
3 KOG3328 HGG motif-containing t 100.0 2.6E-28 5.6E-33 170.5 13.6 131 11-145 7-138 (148)
4 PRK11688 hypothetical protein; 100.0 1.9E-27 4.2E-32 170.5 16.6 109 35-145 27-152 (154)
5 PLN02322 acyl-CoA thioesterase 100.0 1.6E-27 3.5E-32 170.3 15.9 112 35-146 16-133 (154)
6 TIGR00369 unchar_dom_1 unchara 99.9 2.3E-26 4.9E-31 157.5 15.4 109 35-145 6-116 (117)
7 TIGR02286 PaaD phenylacetic ac 99.9 4.6E-26 9.9E-31 155.5 15.7 109 35-145 4-112 (114)
8 COG2050 PaaI HGG motif-contain 99.9 1E-25 2.2E-30 159.2 16.0 111 35-146 24-136 (141)
9 cd03443 PaaI_thioesterase PaaI 99.9 2.3E-21 5E-26 130.7 15.8 108 36-145 3-112 (113)
10 TIGR02447 yiiD_Cterm thioester 99.9 3.1E-20 6.8E-25 130.9 14.8 107 35-146 12-136 (138)
11 PRK10694 acyl-CoA esterase; Pr 99.8 5.4E-18 1.2E-22 118.8 14.3 104 43-146 8-119 (133)
12 cd03442 BFIT_BACH Brown fat-in 99.8 7.2E-18 1.6E-22 115.1 14.5 103 43-145 4-111 (123)
13 COG1607 Acyl-CoA hydrolase [Li 99.8 6.1E-17 1.3E-21 115.6 14.5 103 44-146 11-118 (157)
14 PF03061 4HBT: Thioesterase su 99.7 4.5E-16 9.7E-21 98.4 11.2 77 61-138 1-79 (79)
15 cd00556 Thioesterase_II Thioes 99.7 4E-15 8.8E-20 98.0 11.9 84 61-145 14-98 (99)
16 PF14539 DUF4442: Domain of un 99.6 1.5E-14 3.2E-19 101.2 12.9 107 35-144 19-130 (132)
17 PRK04424 fatty acid biosynthes 99.6 3.8E-13 8.2E-18 99.2 16.0 104 38-146 76-181 (185)
18 cd00586 4HBT 4-hydroxybenzoyl- 99.5 1.3E-12 2.8E-17 86.1 13.5 97 49-146 3-108 (110)
19 PLN02647 acyl-CoA thioesterase 99.5 1.5E-12 3.2E-17 106.8 16.6 132 10-146 55-208 (437)
20 COG4109 Predicted transcriptio 99.5 2.9E-13 6.3E-18 106.8 10.0 126 14-144 299-428 (432)
21 PLN02647 acyl-CoA thioesterase 99.4 1.1E-11 2.3E-16 101.8 14.7 105 42-146 286-400 (437)
22 cd03440 hot_dog The hotdog fol 99.3 1.7E-10 3.8E-15 72.0 13.5 95 49-144 3-99 (100)
23 KOG4781 Uncharacterized conser 99.3 7.4E-12 1.6E-16 93.6 7.8 93 38-130 118-211 (237)
24 cd03445 Thioesterase_II_repeat 99.1 2.3E-09 5E-14 70.7 11.4 80 60-145 14-93 (94)
25 PF13622 4HBT_3: Thioesterase- 99.1 3.4E-09 7.3E-14 81.0 12.7 81 61-147 9-89 (255)
26 PRK10800 acyl-CoA thioesterase 99.0 3.7E-08 8.1E-13 68.1 14.3 96 49-145 5-109 (130)
27 PF09500 YiiD_Cterm: Putative 99.0 4.3E-08 9.3E-13 69.5 14.4 107 35-146 18-142 (144)
28 TIGR02799 thio_ybgC tol-pal sy 99.0 2.8E-08 6.1E-13 68.0 12.9 95 49-145 3-107 (126)
29 cd03449 R_hydratase (R)-hydrat 98.9 9.5E-08 2.1E-12 65.4 11.7 81 61-145 45-127 (128)
30 TIGR00051 acyl-CoA thioester h 98.8 1.9E-07 4.1E-12 62.8 11.6 91 51-142 2-101 (117)
31 cd01288 FabZ FabZ is a 17kD be 98.8 1.4E-06 3.1E-11 59.8 16.1 106 39-146 13-130 (131)
32 COG0824 FcbC Predicted thioest 98.7 1.3E-06 2.7E-11 61.4 13.7 97 47-145 6-111 (137)
33 PRK07531 bifunctional 3-hydrox 98.7 8.2E-07 1.8E-11 74.5 13.9 98 47-145 346-451 (495)
34 PRK00006 fabZ (3R)-hydroxymyri 98.6 8.5E-06 1.8E-10 57.5 16.6 108 38-147 27-145 (147)
35 PF13279 4HBT_2: Thioesterase- 98.6 2.7E-06 5.8E-11 57.7 13.5 91 54-145 2-102 (121)
36 TIGR00189 tesB acyl-CoA thioes 98.6 4.7E-07 1E-11 70.0 9.9 78 62-145 21-98 (271)
37 KOG2763 Acyl-CoA thioesterase 98.5 3.1E-06 6.6E-11 67.8 11.7 92 38-129 191-283 (357)
38 cd03455 SAV4209 SAV4209 is a S 98.4 1.1E-05 2.4E-10 55.2 11.6 77 63-144 45-122 (123)
39 cd03441 R_hydratase_like (R)-h 98.3 1.6E-05 3.4E-10 54.0 11.2 82 60-144 41-126 (127)
40 cd03447 FAS_MaoC FAS_MaoC, the 98.3 3.2E-05 6.8E-10 53.6 12.6 82 62-145 43-124 (126)
41 PRK10526 acyl-CoA thioesterase 98.3 1.3E-05 2.9E-10 62.8 11.5 79 61-145 31-109 (286)
42 cd00493 FabA_FabZ FabA/Z, beta 98.3 0.00016 3.5E-09 49.4 15.6 105 38-144 11-129 (131)
43 TIGR01750 fabZ beta-hydroxyacy 98.2 0.00025 5.4E-09 49.5 15.3 106 38-145 20-139 (140)
44 cd03453 SAV4209_like SAV4209_l 98.2 6.2E-05 1.3E-09 51.8 11.6 78 62-144 45-126 (127)
45 PLN02868 acyl-CoA thioesterase 98.2 2.4E-05 5.3E-10 64.2 10.7 100 38-146 137-236 (413)
46 cd01289 FabA_like Domain of un 98.1 0.00098 2.1E-08 46.7 16.4 106 38-145 18-135 (138)
47 cd03446 MaoC_like MoaC_like 98.1 5.9E-05 1.3E-09 52.5 9.8 78 63-144 52-138 (140)
48 cd03451 FkbR2 FkbR2 is a Strep 98.0 6.3E-05 1.4E-09 52.7 9.4 81 62-146 54-142 (146)
49 COG5496 Predicted thioesterase 98.0 0.0012 2.6E-08 45.5 13.9 81 61-143 28-110 (130)
50 cd03444 Thioesterase_II_repeat 97.9 0.00038 8.2E-09 46.5 11.3 82 61-143 14-101 (104)
51 PF07977 FabA: FabA-like domai 97.9 0.0014 3E-08 45.7 14.5 93 47-141 27-138 (138)
52 cd03454 YdeM YdeM is a Bacillu 97.9 0.00017 3.6E-09 50.3 9.7 51 94-145 81-138 (140)
53 PRK13188 bifunctional UDP-3-O- 97.9 0.0012 2.5E-08 55.2 15.8 106 39-146 342-459 (464)
54 cd03452 MaoC_C MaoC_C The C-t 97.9 0.00025 5.5E-09 49.8 10.4 77 63-145 52-137 (142)
55 PLN02370 acyl-ACP thioesterase 97.8 0.003 6.5E-08 52.1 16.9 98 48-145 141-253 (419)
56 PRK13692 (3R)-hydroxyacyl-ACP 97.8 0.00038 8.3E-09 50.1 10.0 55 90-145 85-143 (159)
57 PRK08190 bifunctional enoyl-Co 97.7 0.00086 1.9E-08 56.1 12.5 79 63-145 60-140 (466)
58 cd01287 FabA FabA, beta-hydrox 97.6 0.0072 1.6E-07 43.1 14.6 96 45-142 27-142 (150)
59 TIGR00189 tesB acyl-CoA thioes 97.6 0.0011 2.3E-08 51.3 10.6 80 62-142 181-266 (271)
60 PRK13691 (3R)-hydroxyacyl-ACP 97.6 0.00089 1.9E-08 48.5 9.1 53 92-145 87-143 (166)
61 PF01575 MaoC_dehydratas: MaoC 97.3 0.0018 3.9E-08 44.2 7.4 66 61-128 50-115 (122)
62 PRK13693 (3R)-hydroxyacyl-ACP 97.3 0.013 2.7E-07 41.3 11.8 78 62-144 55-139 (142)
63 KOG2763 Acyl-CoA thioesterase 97.2 0.0062 1.4E-07 49.1 10.9 95 53-147 15-125 (357)
64 PF01643 Acyl-ACP_TE: Acyl-ACP 97.2 0.026 5.6E-07 43.6 14.1 97 49-145 6-117 (261)
65 PF13622 4HBT_3: Thioesterase- 97.2 0.0028 6.1E-08 48.3 8.4 76 68-144 174-253 (255)
66 cd03450 NodN NodN (nodulation 97.1 0.018 3.8E-07 41.0 11.2 80 63-144 58-145 (149)
67 COG1946 TesB Acyl-CoA thioeste 97.0 0.0029 6.3E-08 49.5 7.2 79 61-145 31-109 (289)
68 PRK10526 acyl-CoA thioesterase 97.0 0.012 2.5E-07 46.3 10.4 80 62-142 192-278 (286)
69 cd03448 HDE_HSD HDE_HSD The R 96.9 0.021 4.6E-07 39.2 9.9 72 62-140 45-116 (122)
70 COG0764 FabA 3-hydroxymyristoy 96.9 0.086 1.9E-06 37.5 14.7 102 42-146 29-143 (147)
71 PF03756 AfsA: A-factor biosyn 96.6 0.12 2.5E-06 35.7 14.6 100 44-145 19-131 (132)
72 PF02551 Acyl_CoA_thio: Acyl-C 96.6 0.017 3.7E-07 40.3 7.6 79 63-141 45-127 (131)
73 KOG3016 Acyl-CoA thioesterase 96.6 0.036 7.8E-07 43.5 10.2 81 59-145 35-115 (294)
74 COG2030 MaoC Acyl dehydratase 96.6 0.066 1.4E-06 38.3 10.8 80 63-146 69-154 (159)
75 PF13452 MaoC_dehydrat_N: N-te 96.5 0.02 4.3E-07 39.2 7.5 51 88-139 74-131 (132)
76 TIGR02278 PaaN-DH phenylacetic 96.3 0.029 6.4E-07 49.0 8.9 79 63-145 575-660 (663)
77 PLN02864 enoyl-CoA hydratase 96.2 0.12 2.5E-06 41.2 11.2 77 63-146 229-305 (310)
78 PLN02868 acyl-CoA thioesterase 96.2 0.047 1E-06 44.9 9.2 79 62-141 325-408 (413)
79 TIGR01749 fabA beta-hydroxyacy 96.1 0.34 7.4E-06 35.2 15.3 94 46-141 51-156 (169)
80 PRK05174 3-hydroxydecanoyl-(ac 96.1 0.37 7.9E-06 35.1 15.3 94 46-141 54-159 (172)
81 PRK11563 bifunctional aldehyde 96.0 0.053 1.2E-06 47.4 9.2 77 63-145 587-672 (675)
82 COG1946 TesB Acyl-CoA thioeste 95.5 0.079 1.7E-06 41.6 7.3 80 62-142 192-278 (289)
83 PLN02864 enoyl-CoA hydratase 94.8 0.23 5E-06 39.5 8.2 58 89-146 94-155 (310)
84 KOG3016 Acyl-CoA thioesterase 93.6 0.4 8.8E-06 37.7 7.1 79 61-140 207-291 (294)
85 PF14765 PS-DH: Polyketide syn 92.4 4 8.6E-05 31.3 12.9 119 14-144 156-285 (295)
86 PF01643 Acyl-ACP_TE: Acyl-ACP 91.2 4.6 0.0001 31.1 10.5 96 44-144 163-259 (261)
87 PLN02370 acyl-ACP thioesterase 82.7 26 0.00057 29.2 10.6 95 48-147 303-403 (419)
88 PF11684 DUF3280: Protein of u 75.5 14 0.0003 26.0 6.0 42 104-145 79-120 (140)
89 COG3884 FatA Acyl-ACP thioeste 73.3 23 0.00049 27.3 7.0 67 51-121 157-223 (250)
90 COG3884 FatA Acyl-ACP thioeste 73.3 40 0.00087 26.0 9.4 55 88-144 55-109 (250)
91 COG3777 Uncharacterized conser 60.6 41 0.00088 26.2 6.2 83 51-144 190-273 (273)
92 PF11141 DUF2914: Protein of u 57.6 40 0.00087 20.4 5.3 40 105-145 27-66 (66)
93 TIGR02813 omega_3_PfaA polyket 57.3 41 0.00089 34.6 7.1 46 95-141 2522-2567(2582)
94 PF14765 PS-DH: Polyketide syn 53.8 96 0.0021 23.5 10.9 108 36-146 5-126 (295)
95 PF10648 Gmad2: Immunoglobulin 50.6 65 0.0014 20.6 5.4 45 95-144 2-50 (88)
96 PF04775 Bile_Hydr_Trans: Acyl 46.2 94 0.002 21.2 6.0 42 92-136 5-46 (126)
97 KOG1206 Peroxisomal multifunct 38.5 20 0.00042 27.8 1.5 55 62-123 192-246 (272)
98 TIGR00074 hypC_hupF hydrogenas 36.1 75 0.0016 19.9 3.6 25 88-112 22-46 (76)
99 TIGR03786 strep_pil_rpt strept 34.9 1E+02 0.0023 18.5 4.6 24 119-142 30-53 (64)
100 PF01835 A2M_N: MG2 domain; I 34.0 1.2E+02 0.0027 19.0 5.9 42 100-142 8-55 (99)
101 smart00634 BID_1 Bacterial Ig- 33.6 59 0.0013 20.6 3.0 21 118-139 16-36 (92)
102 PF06421 LepA_C: GTP-binding p 30.4 1.4E+02 0.0031 20.1 4.4 58 6-69 15-72 (108)
103 cd04316 ND_PkAspRS_like_N ND_P 29.3 1.2E+02 0.0026 19.7 4.0 34 99-135 6-41 (108)
104 PF11974 MG1: Alpha-2-macroglo 29.1 95 0.0021 20.1 3.4 36 106-141 13-48 (97)
105 PF01472 PUA: PUA domain; Int 28.6 35 0.00077 20.8 1.3 20 127-147 38-57 (74)
106 COG4706 Predicted 3-hydroxylac 28.0 1.4E+02 0.0031 21.3 4.3 99 38-138 27-138 (161)
107 PF04052 TolB_N: TolB amino-te 27.6 1.6E+02 0.0036 18.8 4.5 40 95-135 64-103 (105)
108 cd06424 UGGPase UGGPase cataly 26.5 1.9E+02 0.0042 23.2 5.3 71 3-76 60-133 (315)
109 CHL00139 rpl18 ribosomal prote 25.4 1.2E+02 0.0026 20.3 3.5 23 120-142 23-45 (109)
110 cd04317 EcAspRS_like_N EcAspRS 24.7 1.4E+02 0.003 20.3 3.8 38 96-136 5-44 (135)
111 PF08207 EFP_N: Elongation fac 24.3 1.6E+02 0.0034 17.1 3.9 28 110-137 21-48 (58)
112 PF15490 Ten1_2: Telomere-capp 23.7 2.4E+02 0.0053 19.2 7.0 46 89-134 50-98 (118)
113 PRK12426 elongation factor P; 23.4 2.4E+02 0.0053 20.8 5.0 27 110-136 23-49 (185)
114 PF01704 UDPGP: UTP--glucose-1 21.9 75 0.0016 26.5 2.3 70 3-77 110-183 (420)
115 PLN00215 predicted protein; Pr 21.0 43 0.00094 21.4 0.6 21 91-111 16-36 (110)
116 PF08670 MEKHLA: MEKHLA domain 20.7 2.1E+02 0.0045 20.3 4.1 29 112-140 109-139 (148)
117 COG3510 CmcI Cephalosporin hyd 20.5 53 0.0012 24.8 1.1 48 52-103 67-114 (237)
No 1
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.97 E-value=8.3e-29 Score=174.19 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=100.8
Q ss_pred cccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc--CCceEEEEEEeeeeecccCCCEEEEEE
Q 032065 35 QGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT--GKSKASVDLTISLYYSAKIQEEVEIEA 112 (148)
Q Consensus 35 ~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~--~~~~vT~~l~i~fl~p~~~g~~l~~~a 112 (148)
.|+++.+.++|++++++++.|+|+|++|.+|||++++|+|.+++.++.... +...+|+++++||++|++. +.|.++|
T Consensus 24 LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~-g~l~a~a 102 (136)
T PRK10293 24 LDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSARE-GRVRGVC 102 (136)
T ss_pred cCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCC-ceEEEEE
Confidence 499999999999999999999999999999999999999999988876543 3467899999999999995 4899999
Q ss_pred EEEeecCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 113 KVVGSRGKLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 113 ~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
++++.||+++++++++++ ++|+++|.++.|+.-
T Consensus 103 ~vv~~Gr~~~~~~~~v~d-~~g~l~A~~~~t~~i 135 (136)
T PRK10293 103 KPLHLGSRHQVWQIEIFD-EKGRLCCSSRLTTAI 135 (136)
T ss_pred EEEecCCCEEEEEEEEEe-CCCCEEEEEEEEEEE
Confidence 999999999999999995 589999999999863
No 2
>PRK10254 thioesterase; Provisional
Probab=99.96 E-value=2e-28 Score=172.38 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=103.8
Q ss_pred CcccceeeecccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc--CCceEEEEEEeeeeeccc
Q 032065 26 CSELEAITFQGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT--GKSKASVDLTISLYYSAK 103 (148)
Q Consensus 26 ~~~~~~~~~~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~--~~~~vT~~l~i~fl~p~~ 103 (148)
.++... .|+++.+.++|++++++++.|+++|+.|.+|||++++|+|.++++++.... +...+|+++++|||+|++
T Consensus 18 ~~~~~~---LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~ 94 (137)
T PRK10254 18 NTMVAH---LGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVS 94 (137)
T ss_pred cchHHh---hCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCc
Confidence 344444 399999999999999999999999999999999999999999999887432 457899999999999999
Q ss_pred CCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 104 IQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 104 ~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
++.|.++|+++|.||++.++++++++ ++|+++|.++.|..-
T Consensus 95 -~g~l~a~a~vi~~Gr~~~v~~~~v~d-~~g~l~a~~~~t~~i 135 (137)
T PRK10254 95 -EGKVRGVCQPLHLGRQNQSWEIVVFD-EQGRRCCTCRLGTAV 135 (137)
T ss_pred -CCeEEEEEEEEecCcCEEEEEEEEEc-CCCCEEEEEEEEEEE
Confidence 55899999999999999999999995 589999999998763
No 3
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.96 E-value=2.6e-28 Score=170.52 Aligned_cols=131 Identities=31% Similarity=0.377 Sum_probs=113.0
Q ss_pred HHHHHHHHHhhCCCCCcccceeeecccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHH-hccCCce
Q 032065 11 QASIKMLERTSKGVECSELEAITFQGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVN-SFTGKSK 89 (148)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~-~~~~~~~ 89 (148)
+.+++.++-+-+.+ .|+.. +.++++...++|++.|++++++.|+|+.+++|||++|+|+|.+++.++. ....++.
T Consensus 7 ~~~~~~~~~~~~~~---~Fd~~-~~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~g 82 (148)
T KOG3328|consen 7 EFAKEPLEILGKSF---GFDRV-LNNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPG 82 (148)
T ss_pred hhhhhHHHHhcccc---chhhh-cCceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccCCCCc
Confidence 44444444443222 25544 3899999999999999999999999999999999999999999998655 4444689
Q ss_pred EEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 90 ASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 90 vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
|+++|+++||+|+++|+.|.++++++|.||+++|++|+++++.+|+++|++++|+-
T Consensus 83 vsvdLsvsyL~~AklGe~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~ 138 (148)
T KOG3328|consen 83 VSVDLSVSYLSSAKLGEELEIEATVVRVGKTLAFTDVELRRKSTGKIIAKGRHTKY 138 (148)
T ss_pred eEEEEEhhhccccCCCCeEEEEEEEeecCceEEEEEEEEEEcCCCeEEEecceEEE
Confidence 99999999999999999999999999999999999999999989999999999874
No 4
>PRK11688 hypothetical protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=170.47 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=99.0
Q ss_pred cccEEEEeeCCEEEEEEEccCCCCC--CCCcchHHHHHHHHHHHhHHHHHhccC---------------CceEEEEEEee
Q 032065 35 QGIQAVELRTGFLRCYFVIPIHAAD--QDGNWHAGAIATLIDGLGALTVNSFTG---------------KSKASVDLTIS 97 (148)
Q Consensus 35 ~g~~~~~~~~g~~~~~~~v~~~~~n--~~G~lHGG~la~l~D~~~~~a~~~~~~---------------~~~vT~~l~i~ 97 (148)
.|+++.+.++|.+++++++.++|+| +.|.+|||++++|+|.++++++..... ...+|++++++
T Consensus 27 lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~ 106 (154)
T PRK11688 27 LGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVD 106 (154)
T ss_pred hCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEE
Confidence 4999999999999999999999995 579999999999999999999875321 13589999999
Q ss_pred eeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 98 LYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 98 fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
||+|++ |+.|.++|+++|.|||++++++++++ ++|+++|++++||.
T Consensus 107 fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~i~~-~~g~lvA~a~~t~~ 152 (154)
T PRK11688 107 YLRPGR-GERFTATSSVLRAGNKVAVARMELHN-EQGVHIASGTATYL 152 (154)
T ss_pred eeccCC-CCeEEEEEEEEEccCCEEEEEEEEEC-CCCCEEEEEEEEEE
Confidence 999997 99999999999999999999999995 58999999999986
No 5
>PLN02322 acyl-CoA thioesterase
Probab=99.96 E-value=1.6e-27 Score=170.28 Aligned_cols=112 Identities=20% Similarity=0.156 Sum_probs=101.5
Q ss_pred cccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc-CCceEEEEEEeeeeecccCCCEEEEEEE
Q 032065 35 QGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT-GKSKASVDLTISLYYSAKIQEEVEIEAK 113 (148)
Q Consensus 35 ~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~-~~~~vT~~l~i~fl~p~~~g~~l~~~a~ 113 (148)
.|+++.+.++|++++++++.++|+|++|.+|||++++|+|.++++++.... +...+|++++++||+|++.|+.|+++++
T Consensus 16 LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~G~~L~Aea~ 95 (154)
T PLN02322 16 LGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADLGDLVFAEAT 95 (154)
T ss_pred CCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCCCCEEEEEEE
Confidence 499999999999999999999999999999999999999999998876433 2467999999999999998999999999
Q ss_pred EEeecCcEEEEEEEEEEC----C-CCcEEEEEEEEEEe
Q 032065 114 VVGSRGKLTSVLVEVKRK----G-NGELIALGKNWMTS 146 (148)
Q Consensus 114 v~~~gr~~~~~~~~i~~~----~-~g~lvA~a~~t~~~ 146 (148)
+++.||++++++++|++. + +|+++|.++.|+.-
T Consensus 96 vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~ 133 (154)
T PLN02322 96 PVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLIC 133 (154)
T ss_pred EEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEE
Confidence 999999999999999973 1 37999999999853
No 6
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.95 E-value=2.3e-26 Score=157.54 Aligned_cols=109 Identities=24% Similarity=0.292 Sum_probs=99.8
Q ss_pred cccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc--CCceEEEEEEeeeeecccCCCEEEEEE
Q 032065 35 QGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT--GKSKASVDLTISLYYSAKIQEEVEIEA 112 (148)
Q Consensus 35 ~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~--~~~~vT~~l~i~fl~p~~~g~~l~~~a 112 (148)
.|+++.+.++|++++++++.|+++|+.|++|||++++++|.+++.++.... +...+|.+++++|++|++.| .|.+++
T Consensus 6 lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a 84 (117)
T TIGR00369 6 LGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAIA 84 (117)
T ss_pred cCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEEE
Confidence 499999999999999999999999999999999999999999977765432 35678999999999999977 999999
Q ss_pred EEEeecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 113 KVVGSRGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 113 ~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
++++.||+++++++++++ ++|+++|+|++|+.
T Consensus 85 ~v~~~gr~~~~~~~~i~~-~~g~~va~~~~t~~ 116 (117)
T TIGR00369 85 QVVHLGRQTGVAEIEIVD-EQGRLCALSRGTTA 116 (117)
T ss_pred EEEecCceEEEEEEEEEC-CCCCEEEEEEEEEc
Confidence 999999999999999995 58999999999985
No 7
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.95 E-value=4.6e-26 Score=155.51 Aligned_cols=109 Identities=29% Similarity=0.392 Sum_probs=100.6
Q ss_pred cccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEE
Q 032065 35 QGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKV 114 (148)
Q Consensus 35 ~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v 114 (148)
.|+++.+.++|++.++++++|+|+|+.|++|||++++++|.+++.++... +...+|.+++++|++|++.|+.|.++++|
T Consensus 4 lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~-~~~~~t~~~~i~f~rp~~~G~~l~~~a~v 82 (114)
T TIGR02286 4 LGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSY-GDAAVAAQCTIDFLRPGRAGERLEAEAVE 82 (114)
T ss_pred cCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCC-CCceEEEEEEEEEecCCCCCCEEEEEEEE
Confidence 58999999999999999999999999999999999999999988776544 34578999999999999999999999999
Q ss_pred EeecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 115 VGSRGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 115 ~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
++.|+++.++++++++ ++|+++|.+++|+-
T Consensus 83 ~~~g~~~~~~~~~i~~-~~~~~va~~~~t~~ 112 (114)
T TIGR02286 83 VSRGGRTGTYDVEVVN-QEGELVALFRGTSR 112 (114)
T ss_pred EEeCCcEEEEEEEEEc-CCCCEEEEEEEEEE
Confidence 9999999999999996 68999999999874
No 8
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=1e-25 Score=159.23 Aligned_cols=111 Identities=27% Similarity=0.382 Sum_probs=102.5
Q ss_pred cccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccC--CceEEEEEEeeeeecccCCCEEEEEE
Q 032065 35 QGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTG--KSKASVDLTISLYYSAKIQEEVEIEA 112 (148)
Q Consensus 35 ~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~--~~~vT~~l~i~fl~p~~~g~~l~~~a 112 (148)
.|+++...++|++++++++.+++.|+.|++|||++++++|.++++++..... ...+|+++++||+||++.|+ +.++|
T Consensus 24 lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~-v~a~a 102 (141)
T COG2050 24 LGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD-VTAEA 102 (141)
T ss_pred cCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe-EEEEE
Confidence 3889999999999999999999999999999999999999999999987664 35589999999999999777 99999
Q ss_pred EEEeecCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 113 KVVGSRGKLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 113 ~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
++++.||+++++++++++++.++++|++++|+.-
T Consensus 103 ~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v 136 (141)
T COG2050 103 RVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAV 136 (141)
T ss_pred EEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEE
Confidence 9999999999999999987677999999999863
No 9
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.89 E-value=2.3e-21 Score=130.73 Aligned_cols=108 Identities=31% Similarity=0.393 Sum_probs=99.4
Q ss_pred ccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc--CCceEEEEEEeeeeecccCCCEEEEEEE
Q 032065 36 GIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT--GKSKASVDLTISLYYSAKIQEEVEIEAK 113 (148)
Q Consensus 36 g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~--~~~~vT~~l~i~fl~p~~~g~~l~~~a~ 113 (148)
|+++.+.+++.+++++++.+.++|+.|.+|||++++++|.+++..+.... +...++.+++++|++|++. +.+.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~ 81 (113)
T cd03443 3 GIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARAR 81 (113)
T ss_pred cEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEE
Confidence 67888999999999999999999999999999999999999998887654 4577899999999999998 99999999
Q ss_pred EEeecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 114 VVGSRGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 114 v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
+.+.||+..++++++++ ++|+++|+|++++.
T Consensus 82 v~~~g~~~~~~~~~~~~-~~~~~~a~a~~~~~ 112 (113)
T cd03443 82 VVKLGRRLAVVEVEVTD-EDGKLVATARGTFA 112 (113)
T ss_pred EEecCceEEEEEEEEEC-CCCCEEEEEEEEEe
Confidence 99999999999999995 46999999999875
No 10
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.86 E-value=3.1e-20 Score=130.90 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=90.9
Q ss_pred cccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHh----cc-CCceEEEEEEeeeeecccCCCEEE
Q 032065 35 QGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNS----FT-GKSKASVDLTISLYYSAKIQEEVE 109 (148)
Q Consensus 35 ~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~----~~-~~~~vT~~l~i~fl~p~~~g~~l~ 109 (148)
.|+++.+.++|++++++++.|+ .|+.|++|||++++|+|.+++.++.. .. +...||.+++++|++|++ + .+.
T Consensus 12 lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~-~-~~~ 88 (138)
T TIGR02447 12 MGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVT-G-DPV 88 (138)
T ss_pred cCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcC-C-CeE
Confidence 4999999999999999999996 89999999999999999876554421 11 246799999999999998 4 477
Q ss_pred EEEEE-------------EeecCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 110 IEAKV-------------VGSRGKLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 110 ~~a~v-------------~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
+++++ .+.||+..+++++|++ +|+++|.++++|..
T Consensus 89 a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~ 136 (138)
T TIGR02447 89 ANCEAPDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVA 136 (138)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 77777 7889999999999994 47999999999864
No 11
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.79 E-value=5.4e-18 Score=118.79 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=91.5
Q ss_pred eCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEE-EeeeeecccCCCEEEEEEEEEeecCcE
Q 032065 43 RTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDL-TISLYYSAKIQEEVEIEAKVVGSRGKL 121 (148)
Q Consensus 43 ~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~~gr~~ 121 (148)
.++.......+.|+++|++|++|||.++.|+|++++.++....+..++|+++ .++|++|+++|+.|.++++|.+.|++.
T Consensus 8 ~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~sS 87 (133)
T PRK10694 8 PQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTTS 87 (133)
T ss_pred CCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEccCce
Confidence 4566788889999999999999999999999999999988777678899999 689999999999999999999999999
Q ss_pred EEEEEEEEECC-------CCcEEEEEEEEEEe
Q 032065 122 TSVLVEVKRKG-------NGELIALGKNWMTS 146 (148)
Q Consensus 122 ~~~~~~i~~~~-------~g~lvA~a~~t~~~ 146 (148)
..++++++.+. +.++++++.+||.+
T Consensus 88 ~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVa 119 (133)
T PRK10694 88 ISINIEVWVKKVASEPIGQRYKATEALFTYVA 119 (133)
T ss_pred EEEEEEEEEeecccCCCCcEEEEEEEEEEEEE
Confidence 99999999521 13567889889875
No 12
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.79 E-value=7.2e-18 Score=115.06 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=90.8
Q ss_pred eCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEE-EeeeeecccCCCEEEEEEEEEeecCcE
Q 032065 43 RTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDL-TISLYYSAKIQEEVEIEAKVVGSRGKL 121 (148)
Q Consensus 43 ~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~~gr~~ 121 (148)
+++.+++++++.++++|+.|.+|||.+++++|.+++.++....+...++..+ +++|++|++.|+.|.+++++.+.|++.
T Consensus 4 ~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~~~ 83 (123)
T cd03442 4 EDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGRTS 83 (123)
T ss_pred CccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEecCCe
Confidence 4677899999999999999999999999999999988776554445678888 799999999999999999999999999
Q ss_pred EEEEEEEEECC----CCcEEEEEEEEEE
Q 032065 122 TSVLVEVKRKG----NGELIALGKNWMT 145 (148)
Q Consensus 122 ~~~~~~i~~~~----~g~lvA~a~~t~~ 145 (148)
+.+++++++++ +++++|+|..++.
T Consensus 84 ~~~~~~i~~~~~~~~~~~~~a~~~~~~v 111 (123)
T cd03442 84 MEVGVEVEAEDPLTGERRLVTSAYFTFV 111 (123)
T ss_pred EEEEEEEEEecCCCCcEEEEEEEEEEEE
Confidence 99999999753 3579999998875
No 13
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.75 E-value=6.1e-17 Score=115.60 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=91.9
Q ss_pred CCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEE-EeeeeecccCCCEEEEEEEEEeecCcEE
Q 032065 44 TGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDL-TISLYYSAKIQEEVEIEAKVVGSRGKLT 122 (148)
Q Consensus 44 ~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~~gr~~~ 122 (148)
++....+..+.|.+.|++|++|||.+.+++|.++++++....+..+||+++ .++|++|+++|+.|.+.++|.+.||+++
T Consensus 11 ~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTSm 90 (157)
T COG1607 11 EGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTSM 90 (157)
T ss_pred CceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEEEEEEEEeecCcccE
Confidence 566678888899999999999999999999999999998887778999999 7999999999999999999999999999
Q ss_pred EEEEEEEECC----CCcEEEEEEEEEEe
Q 032065 123 SVLVEVKRKG----NGELIALGKNWMTS 146 (148)
Q Consensus 123 ~~~~~i~~~~----~g~lvA~a~~t~~~ 146 (148)
.+.++++.++ .....+++.+||.+
T Consensus 91 ~V~Vev~~~~~~~~~~~~~t~~~ft~VA 118 (157)
T COG1607 91 EVGVEVWAEDIRSGERRLATSAYFTFVA 118 (157)
T ss_pred EEEEEEEEecccCCcceEeeeEEEEEEE
Confidence 9999999742 23667788888865
No 14
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.70 E-value=4.5e-16 Score=98.38 Aligned_cols=77 Identities=29% Similarity=0.424 Sum_probs=69.1
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhccC--CceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEE
Q 032065 61 DGNWHAGAIATLIDGLGALTVNSFTG--KSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIA 138 (148)
Q Consensus 61 ~G~lHGG~la~l~D~~~~~a~~~~~~--~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA 138 (148)
+|.+|||.+++|+|.++..++..... ...++.+++++|++|++.|+.|.+++++.+.|+++++++++++++ +++++|
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~-~~~~~~ 79 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSE-DGRLCA 79 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEET-TSCEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEEC-CCcEEC
Confidence 58999999999999999999987664 467899999999999999999999999999999999999999975 677776
No 15
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.65 E-value=4e-15 Score=98.01 Aligned_cols=84 Identities=18% Similarity=0.082 Sum_probs=75.5
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhcc-CCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEE
Q 032065 61 DGNWHAGAIATLIDGLGALTVNSFT-GKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIAL 139 (148)
Q Consensus 61 ~G~lHGG~la~l~D~~~~~a~~~~~-~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~ 139 (148)
.+.+|||++++++|.+++.++.... ....+|.+++++|++|++.++++.+++++++.|++.++.++++++ ++|+++|+
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~G~lva~ 92 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQ-RDGKLVAS 92 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEEC-CCCcEEEE
Confidence 7999999999999999988876543 235789999999999999889999999999999999999999995 58999999
Q ss_pred EEEEEE
Q 032065 140 GKNWMT 145 (148)
Q Consensus 140 a~~t~~ 145 (148)
++.++.
T Consensus 93 ~~~~~~ 98 (99)
T cd00556 93 ATQSFL 98 (99)
T ss_pred EEEeEc
Confidence 998874
No 16
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.62 E-value=1.5e-14 Score=101.22 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=80.2
Q ss_pred cccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCC--ceEEEEEEeeeeecccCCCEEEEEE
Q 032065 35 QGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGK--SKASVDLTISLYYSAKIQEEVEIEA 112 (148)
Q Consensus 35 ~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~--~~vT~~l~i~fl~p~~~g~~l~~~a 112 (148)
.|+++.+.++++++++++..+...|+.|++|||++++++|.++++.+....+. ..+..+++++|++|++ +.|.+++
T Consensus 19 ~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~--g~v~a~~ 96 (132)
T PF14539_consen 19 AGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPAR--GDVTATA 96 (132)
T ss_dssp CT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S-----S-EEEEE
T ss_pred ceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccC--CcEEEEE
Confidence 49999999999999999999999999999999999999999999888765543 4457899999999998 5888888
Q ss_pred EEEee---cCcEEEEEEEEEECCCCcEEEEEEEEE
Q 032065 113 KVVGS---RGKLTSVLVEVKRKGNGELIALGKNWM 144 (148)
Q Consensus 113 ~v~~~---gr~~~~~~~~i~~~~~g~lvA~a~~t~ 144 (148)
++-.. .|-...+++++++ ++|+.+|+++.|.
T Consensus 97 ~~~~e~~~~~~~~~~~v~i~D-~~G~~Va~~~~t~ 130 (132)
T PF14539_consen 97 ELTEEQIGERGELTVPVEITD-ADGEVVAEATITW 130 (132)
T ss_dssp E-TCCHCCHEEEEEEEEEEEE-TTC-EEEEEEEEE
T ss_pred EcCHHHhCCCcEEEEEEEEEE-CCCCEEEEEEEEE
Confidence 88553 2556778899994 6899999998875
No 17
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.56 E-value=3.8e-13 Score=99.16 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=88.3
Q ss_pred EEEEeeCC-EEEEEEEccCCCC-CCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEE
Q 032065 38 QAVELRTG-FLRCYFVIPIHAA-DQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVV 115 (148)
Q Consensus 38 ~~~~~~~g-~~~~~~~v~~~~~-n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~ 115 (148)
++.+.++| .+.....+.+++. |..+.+|||++++++|.++... ..+...++...+++|++|+.+||.|.+++++.
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~~~~~~~~~i~~irF~kPV~pGD~L~~ea~v~ 152 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---IDAELALTGVANIRFKRPVKLGERVVAKAEVV 152 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---cCCcEEEEEeeeEEEccCCCCCCEEEEEEEEE
Confidence 56778888 6889999988888 9999999999999999863321 23445677778999999999999999999999
Q ss_pred eecCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 116 GSRGKLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 116 ~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
+.+++...++++++. +|+++++|+.++..
T Consensus 153 ~~~~~~~~v~~~~~v--~g~~V~ege~~~~~ 181 (185)
T PRK04424 153 RKKGNKYIVEVKSYV--GDELVFRGKFIMYR 181 (185)
T ss_pred EccCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 999999999999995 58999999998854
No 18
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.51 E-value=1.3e-12 Score=86.13 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=85.5
Q ss_pred EEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhc---------cCCceEEEEEEeeeeecccCCCEEEEEEEEEeecC
Q 032065 49 CYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSF---------TGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRG 119 (148)
Q Consensus 49 ~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~---------~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr 119 (148)
.++++.+.++|+.|.+|+|.+..++|++....+... .+...++.+.+++|++|++.|+.|.+++++.+.++
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~ 82 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGR 82 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCc
Confidence 467888999999999999999999999988777543 23356789999999999999999999999999999
Q ss_pred cEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 120 KLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 120 ~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
+...++.+++++ +|+++|+|..++..
T Consensus 83 ~~~~~~~~~~~~-~g~~~a~~~~~~~~ 108 (110)
T cd00586 83 KSFTFEQEIFRE-DGELLATAETVLVC 108 (110)
T ss_pred EEEEEEEEEECC-CCeEEEEEEEEEEE
Confidence 999999999954 79999999987753
No 19
>PLN02647 acyl-CoA thioesterase
Probab=99.51 E-value=1.5e-12 Score=106.78 Aligned_cols=132 Identities=9% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhhCCC-CCcccceeeecccEEEEeeCCEEEEEEEc------cCCCCCCCCcchHHHHHHHHHHHhHHHHH
Q 032065 10 LQASIKMLERTSKGV-ECSELEAITFQGIQAVELRTGFLRCYFVI------PIHAADQDGNWHAGAIATLIDGLGALTVN 82 (148)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~~~~~~v------~~~~~n~~G~lHGG~la~l~D~~~~~a~~ 82 (148)
+++....++...+.. +.+... .+......+....+.+++ .+.+.|++|.+|||-|..++|.++++++.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~-----~L~~k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~ 129 (437)
T PLN02647 55 WEARSSIFERLLDPPKDAPPQS-----ELLTKTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISV 129 (437)
T ss_pred HHHHHHHhhhccCcccccCccc-----cccccccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHH
Confidence 566666666654221 111122 233344455566777754 45669999999999999999999999998
Q ss_pred hccCC--------ceEEEEE-EeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECC------CCcEEEEEEEEEEe
Q 032065 83 SFTGK--------SKASVDL-TISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKG------NGELIALGKNWMTS 146 (148)
Q Consensus 83 ~~~~~--------~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~------~g~lvA~a~~t~~~ 146 (148)
.+.+. .+||+++ +++|++|++.|+.|.++++|...||+.+.+.++++.+. +..++++|.+||.+
T Consensus 130 rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA 208 (437)
T PLN02647 130 KHCSDDDSTTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVA 208 (437)
T ss_pred HHhCCCcccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEE
Confidence 76544 5899999 79999999999999999999999999999999999642 23578999999975
No 20
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.48 E-value=2.9e-13 Score=106.78 Aligned_cols=126 Identities=12% Similarity=0.143 Sum_probs=104.9
Q ss_pred HHHHHHhh----CCCCCcccceeeecccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCce
Q 032065 14 IKMLERTS----KGVECSELEAITFQGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSK 89 (148)
Q Consensus 14 ~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~ 89 (148)
++.+++++ +.+-+++|++.+.+++.-...+.+ ..+++.|.|.|+.|++.-|+++.++-++.-..+....+.+.
T Consensus 299 ~dvlk~lq~~q~qpqvget~~d~I~~~l~e~~~~~~---~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~~ni 375 (432)
T COG4109 299 QDVLKSLQMIQRQPQVGETISDQIANNLSEKGDEYG---VTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKKRNI 375 (432)
T ss_pred HHHHHHHHHhccCCcccccHHHHHHhhhhhhccccc---eEEEechhhccccccchHHHHHHHHHHHHHHHHHHhcCCce
Confidence 45566664 233378999988888865444433 33889999999999999999999999998888877766788
Q ss_pred EEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEE
Q 032065 90 ASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWM 144 (148)
Q Consensus 90 vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~ 144 (148)
+..++++.||+|++.++.|.+..+++..||+.+.++++++++ |.++|+|-.+.
T Consensus 376 iIE~i~iyflk~vqid~~l~I~prIl~~gR~~a~idvei~~~--~~ivaKAiv~~ 428 (432)
T COG4109 376 IIENITIYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEIYHD--GQIVAKAIVTV 428 (432)
T ss_pred EEEeeeeeeecceecccEEEEeeeeeccccccceeEEEEeeC--cchhhhheeee
Confidence 899999999999999999999999999999999999999975 78888886543
No 21
>PLN02647 acyl-CoA thioesterase
Probab=99.40 E-value=1.1e-11 Score=101.77 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=85.7
Q ss_pred eeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEE-EeeeeecccCCCEEEEEEEEEeecCc
Q 032065 42 LRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDL-TISLYYSAKIQEEVEIEAKVVGSRGK 120 (148)
Q Consensus 42 ~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~~gr~ 120 (148)
..+..+.....+.|.+.|.+|.+|||.++.++|++++.++..+.+...+|+++ .++|++|+++|+.|.++|.|+..|.+
T Consensus 286 m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~~~ 365 (437)
T PLN02647 286 IRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAGLRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTELE 365 (437)
T ss_pred ccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEecCccccCcEEEEEEEEEEEeEE
Confidence 34556777788899999999999999999999999999988877778899998 79999999999999999999888764
Q ss_pred -----EEEEEEE--EEEC--CCCcEEEEEEEEEEe
Q 032065 121 -----LTSVLVE--VKRK--GNGELIALGKNWMTS 146 (148)
Q Consensus 121 -----~~~~~~~--i~~~--~~g~lvA~a~~t~~~ 146 (148)
.+.+++. +.+. .+++++.++-+||.+
T Consensus 366 s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva 400 (437)
T PLN02647 366 NSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTV 400 (437)
T ss_pred ecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEE
Confidence 3444444 4332 235678888888865
No 22
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.32 E-value=1.7e-10 Score=72.02 Aligned_cols=95 Identities=20% Similarity=0.304 Sum_probs=82.6
Q ss_pred EEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc--CCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEE
Q 032065 49 CYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT--GKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLV 126 (148)
Q Consensus 49 ~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~--~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~ 126 (148)
..+++.+.+.+..+.+|||.+..++|.+....+.... +...++.+++++|++|++.|+.+.+++++.+.+++...+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 82 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEV 82 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEE
Confidence 3567777888899999999999999999887776543 34667889999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEEEEEE
Q 032065 127 EVKRKGNGELIALGKNWM 144 (148)
Q Consensus 127 ~i~~~~~g~lvA~a~~t~ 144 (148)
.+++ ++|++++.+..++
T Consensus 83 ~~~~-~~~~~~~~~~~~~ 99 (100)
T cd03440 83 EVRN-EDGKLVATATATF 99 (100)
T ss_pred EEEC-CCCCEEEEEEEEe
Confidence 9995 4799999998765
No 23
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=7.4e-12 Score=93.60 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=81.9
Q ss_pred EEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccC-CceEEEEEEeeeeecccCCCEEEEEEEEEe
Q 032065 38 QAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTG-KSKASVDLTISLYYSAKIQEEVEIEAKVVG 116 (148)
Q Consensus 38 ~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~-~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~ 116 (148)
.+.....++.++-+...++++++.|.+|||+||+++|++.+++.+...+ ...+|.+|+++|.+|++....+.+++.+.+
T Consensus 118 vFyd~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~vi~t~~~~ 197 (237)
T KOG4781|consen 118 VFYDPSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVVIRTQLDK 197 (237)
T ss_pred EEEecCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEEEecchhh
Confidence 3444556788899999999999999999999999999999999986554 478999999999999999999999999999
Q ss_pred ecCcEEEEEEEEEE
Q 032065 117 SRGKLTSVLVEVKR 130 (148)
Q Consensus 117 ~gr~~~~~~~~i~~ 130 (148)
..+|.+...+++..
T Consensus 198 ~~Grk~~~~g~l~~ 211 (237)
T KOG4781|consen 198 VEGRKCKTFGELNV 211 (237)
T ss_pred hcCcccceeeEEEE
Confidence 99988888877774
No 24
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.12 E-value=2.3e-09 Score=70.73 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=68.2
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEE
Q 032065 60 QDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIAL 139 (148)
Q Consensus 60 ~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~ 139 (148)
+.+.+|||.+++++-.++...+ +......+++.+|++|+..+.++.++.+++|.||+.+..+++++++ |+++..
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~----~~~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q~--g~~~~~ 87 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV----PDDRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQN--GKVIFT 87 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC----CCCCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEEC--CEEEEE
Confidence 5789999999999877755433 2224567899999999998899999999999999999999999965 999999
Q ss_pred EEEEEE
Q 032065 140 GKNWMT 145 (148)
Q Consensus 140 a~~t~~ 145 (148)
++.+|.
T Consensus 88 a~~sf~ 93 (94)
T cd03445 88 ATASFQ 93 (94)
T ss_pred EEEEEe
Confidence 998885
No 25
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=99.08 E-value=3.4e-09 Score=81.04 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=63.3
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEE
Q 032065 61 DGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALG 140 (148)
Q Consensus 61 ~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a 140 (148)
.+.+|||++++++-.++-... .+......+++++|++|++.| ++.++++++|.||+.+.++++++++ |++++.+
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~---~~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q~--~~~~~~a 82 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA---PPPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQD--GKVVATA 82 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH---TTTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEET--TEEEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc---cCCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEEC--CcCEEEE
Confidence 678999988887665544322 122357889999999999988 9999999999999999999999974 8999999
Q ss_pred EEEEEec
Q 032065 141 KNWMTSK 147 (148)
Q Consensus 141 ~~t~~~~ 147 (148)
+.+|..+
T Consensus 83 ~~~f~~~ 89 (255)
T PF13622_consen 83 TASFGRP 89 (255)
T ss_dssp EEEEE--
T ss_pred EEEEccC
Confidence 9999753
No 26
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.00 E-value=3.7e-08 Score=68.10 Aligned_cols=96 Identities=10% Similarity=0.181 Sum_probs=81.0
Q ss_pred EEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc---------CCceEEEEEEeeeeecccCCCEEEEEEEEEeecC
Q 032065 49 CYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT---------GKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRG 119 (148)
Q Consensus 49 ~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~---------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr 119 (148)
.+.++....+++.|.++-+.+..+++++........+ +...+..+.+++|++|+..||+|.+++++.+.|+
T Consensus 5 ~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~ 84 (130)
T PRK10800 5 WPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMRG 84 (130)
T ss_pred EEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeCc
Confidence 5677788899999999999999999998665543322 2345688999999999999999999999999999
Q ss_pred cEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 120 KLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 120 ~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
+......++++ .+|+++|.|..++.
T Consensus 85 ~s~~~~~~i~~-~~g~~~a~~~~~~v 109 (130)
T PRK10800 85 TSLTFTQRIVN-AEGTLLNEAEVLIV 109 (130)
T ss_pred EEEEEEEEEEc-CCCeEEEEEEEEEE
Confidence 98888989995 47999999987764
No 27
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=98.99 E-value=4.3e-08 Score=69.46 Aligned_cols=107 Identities=16% Similarity=0.105 Sum_probs=74.8
Q ss_pred cccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhc---cC--CceEEEEEEeeeeecccCCCEEE
Q 032065 35 QGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSF---TG--KSKASVDLTISLYYSAKIQEEVE 109 (148)
Q Consensus 35 ~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~---~~--~~~vT~~l~i~fl~p~~~g~~l~ 109 (148)
.|+++...+++++.++.|..| -.|+.|+++||-+++++--++.-.+... .+ ...|..+-+++|++|+. + .+.
T Consensus 18 Mgi~v~~~~~~~l~~~APL~p-N~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~-~-d~~ 94 (144)
T PF09500_consen 18 MGIKVTSYTGQRLELSAPLAP-NINHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLNGDIVIADSNIRYLKPVT-G-DFT 94 (144)
T ss_dssp TT-EEEEEETTEEEEE--SGG-GB-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT---EEEEEEEEEEE-S----S---E
T ss_pred cCcEEEEEcCCEEEEeccCCC-CcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCceEEcCCCC-C-CcE
Confidence 599999999999999999988 6799999999999999877644333321 12 46788999999999998 3 577
Q ss_pred EEEEEE-------------eecCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 110 IEAKVV-------------GSRGKLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 110 ~~a~v~-------------~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
++++.- +.||-...+++++++ +|+++|+-++.|..
T Consensus 95 A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~--~~~~~a~f~G~yv~ 142 (144)
T PF09500_consen 95 ARCSLPEPEDWERFLQTLARGGRARITLEVEIYS--GGELAAEFTGRYVA 142 (144)
T ss_dssp EEEE-------S---GGGGCTS-EEEEEEEEEEE--TTEEEEEEEEEEEE
T ss_pred EEEeccccchhHHHHHHHHcCCcEEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 887776 668888899999996 48899998888765
No 28
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=98.98 E-value=2.8e-08 Score=67.99 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=79.5
Q ss_pred EEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc----------CCceEEEEEEeeeeecccCCCEEEEEEEEEeec
Q 032065 49 CYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT----------GKSKASVDLTISLYYSAKIQEEVEIEAKVVGSR 118 (148)
Q Consensus 49 ~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~----------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~g 118 (148)
.++++....+++.|.+|.+.+..+++++........+ +...+..+.+++|++|++.|++|.+++++.+.|
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~ 82 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELK 82 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEecC
Confidence 4567788899999999999999999987655443221 123468899999999999999999999999999
Q ss_pred CcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 119 GKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 119 r~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
++....+.++++ +|+++|.|..++.
T Consensus 83 ~~~~~~~~~i~~--~g~~~a~~~~~~v 107 (126)
T TIGR02799 83 GASLVFAQEVRR--GDTLLCEATVEVA 107 (126)
T ss_pred ceEEEEEEEEEe--CCEEEEEEEEEEE
Confidence 999999999994 5899999987753
No 29
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.85 E-value=9.5e-08 Score=65.37 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecC--cEEEEEEEEEECCCCcEEE
Q 032065 61 DGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRG--KLTSVLVEVKRKGNGELIA 138 (148)
Q Consensus 61 ~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr--~~~~~~~~i~~~~~g~lvA 138 (148)
.-.+||..++++++.+... ...+...+..+.+++|++|+..|++|.+++++.+... +...++++++++ +|++++
T Consensus 45 ~~i~~g~~~~~~~~~~~~~---~~~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~-~g~~v~ 120 (128)
T cd03449 45 GRIAHGMLTASLISAVLGT---LLPGPGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQ-NGEVVI 120 (128)
T ss_pred CceecHHHHHHHHHHHHhc---cCCCceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeC-CCCEEE
Confidence 3589999999998765432 1223344567789999999999999999999998765 788899999964 799999
Q ss_pred EEEEEEE
Q 032065 139 LGKNWMT 145 (148)
Q Consensus 139 ~a~~t~~ 145 (148)
+|+.++.
T Consensus 121 ~g~~~~~ 127 (128)
T cd03449 121 EGEAVVL 127 (128)
T ss_pred EEEEEEe
Confidence 9998875
No 30
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=98.80 E-value=1.9e-07 Score=62.76 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=73.9
Q ss_pred EEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc---------CCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcE
Q 032065 51 FVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT---------GKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKL 121 (148)
Q Consensus 51 ~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~---------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~ 121 (148)
+++....+++.|.+|.+.+..+++++........+ +...+..+.+++|++|++.|+.|.+++++.+.|++.
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s 81 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNGFS 81 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCcEE
Confidence 45667889999999999999999998655543221 234578899999999999999999999999999999
Q ss_pred EEEEEEEEECCCCcEEEEEEE
Q 032065 122 TSVLVEVKRKGNGELIALGKN 142 (148)
Q Consensus 122 ~~~~~~i~~~~~g~lvA~a~~ 142 (148)
...+-+++++ ++.+++.+..
T Consensus 82 ~~~~~~i~~~-~~~~~~~~~~ 101 (117)
T TIGR00051 82 FVFSQEIFNE-DEALLKAATV 101 (117)
T ss_pred EEEEEEEEeC-CCcEEEeeEE
Confidence 9999999964 5666655554
No 31
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.79 E-value=1.4e-06 Score=59.82 Aligned_cols=106 Identities=10% Similarity=-0.013 Sum_probs=79.8
Q ss_pred EEEee-CCEEEEEEEccCC--C-CCCC---CcchHHHHHHHHHHHhHHHHHhcc----CCceEEE-EEEeeeeecccCCC
Q 032065 39 AVELR-TGFLRCYFVIPIH--A-ADQD---GNWHAGAIATLIDGLGALTVNSFT----GKSKASV-DLTISLYYSAKIQE 106 (148)
Q Consensus 39 ~~~~~-~g~~~~~~~v~~~--~-~n~~---G~lHGG~la~l~D~~~~~a~~~~~----~~~~vT~-~l~i~fl~p~~~g~ 106 (148)
+...+ ++.++....+.++ + ..+. ..++|=++..++..+++....... +...+.. --++.|++|++.|+
T Consensus 13 i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd 92 (131)
T cd01288 13 VLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGD 92 (131)
T ss_pred EEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCC
Confidence 44455 4567777777543 2 2322 788998888888888777654321 2233333 35899999999999
Q ss_pred EEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 107 EVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 107 ~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
.+.+++++.+.+++...++++++. +|+++++|+.+|.+
T Consensus 93 ~l~i~~~v~~~~~~~~~~~~~~~~--~g~~v~~~~~~~~~ 130 (131)
T cd01288 93 QLILEVELLKLRRGIGKFKGKAYV--DGKLVAEAELMFAI 130 (131)
T ss_pred EEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 999999999999999999999985 48999999999875
No 32
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=98.70 E-value=1.3e-06 Score=61.44 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=82.0
Q ss_pred EEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc---------CCceEEEEEEeeeeecccCCCEEEEEEEEEee
Q 032065 47 LRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT---------GKSKASVDLTISLYYSAKIQEEVEIEAKVVGS 117 (148)
Q Consensus 47 ~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~---------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~ 117 (148)
....++|.-..++..|.++-+....+++.+-.-.+...+ +...++++.+++|++|++.|+.+.+++++.+.
T Consensus 6 ~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~~ 85 (137)
T COG0824 6 FSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEEL 85 (137)
T ss_pred eEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEee
Confidence 356677788899999999999999999998665554421 12367999999999999999999999999999
Q ss_pred cCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 118 RGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 118 gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
|+......-+|+++ ++++|+|+.++.
T Consensus 86 ~~~s~~~~~~i~~~--~~l~a~~~~~~V 111 (137)
T COG0824 86 GGKSLTLGYEIVNE--DELLATGETTLV 111 (137)
T ss_pred cCeEEEEEEEEEeC--CEEEEEEEEEEE
Confidence 99999999999965 399999988764
No 33
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.67 E-value=8.2e-07 Score=74.49 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=83.9
Q ss_pred EEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc--------CCceEEEEEEeeeeecccCCCEEEEEEEEEeec
Q 032065 47 LRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT--------GKSKASVDLTISLYYSAKIQEEVEIEAKVVGSR 118 (148)
Q Consensus 47 ~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~--------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~g 118 (148)
.+.+++|.+.+++..|.++-+.+..++|++........+ +...+.++.+++|++|++.|+.|.+++++.+.|
T Consensus 346 ~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~~ 425 (495)
T PRK07531 346 RLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSGD 425 (495)
T ss_pred EEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEecC
Confidence 467899999999999999999999999998655443321 224478999999999999999999999999999
Q ss_pred CcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 119 GKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 119 r~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
++....+.++++ .+|+++|.|..++.
T Consensus 426 ~~s~~~~~~i~~-~~g~l~A~g~~~~v 451 (495)
T PRK07531 426 EKRLHLFHTLYD-AGGELIATAEHMLL 451 (495)
T ss_pred CcEEEEEEEEEC-CCCcEEEEEEEEEE
Confidence 999999999995 57999999988764
No 34
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.64 E-value=8.5e-06 Score=57.52 Aligned_cols=108 Identities=10% Similarity=0.045 Sum_probs=77.8
Q ss_pred EEEEeeC-CEEEEEEEccCCC--C-C---CCCcchHHHHHHHHHHHhHHHHHhcc---CCceEEEEE-EeeeeecccCCC
Q 032065 38 QAVELRT-GFLRCYFVIPIHA--A-D---QDGNWHAGAIATLIDGLGALTVNSFT---GKSKASVDL-TISLYYSAKIQE 106 (148)
Q Consensus 38 ~~~~~~~-g~~~~~~~v~~~~--~-n---~~G~lHGG~la~l~D~~~~~a~~~~~---~~~~vT~~l-~i~fl~p~~~g~ 106 (148)
++.+.++ +.++....+.++. . + ....++|=++..++-.++++...... +...+...+ +++|++|++.|+
T Consensus 27 ~i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd 106 (147)
T PRK00006 27 RVLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGD 106 (147)
T ss_pred EEEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCC
Confidence 3445544 5677777775432 2 2 23578888887777777665443221 223333333 799999999999
Q ss_pred EEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEEEec
Q 032065 107 EVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWMTSK 147 (148)
Q Consensus 107 ~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~~~ 147 (148)
+|.+++++.+..+++..++++++. +|+++++|+.++.-|
T Consensus 107 ~l~i~~~i~~~~~~~v~~~~~~~~--~g~~v~~~~~~~~~~ 145 (147)
T PRK00006 107 QLILEVELLKQRRGIWKFKGVATV--DGKLVAEAELMFAIR 145 (147)
T ss_pred EEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEEEEE
Confidence 999999999999999999999985 599999999988643
No 35
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=98.64 E-value=2.7e-06 Score=57.74 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=68.5
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHhHHHHHhc------c--CCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEE
Q 032065 54 PIHAADQDGNWHAGAIATLIDGLGALTVNSF------T--GKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVL 125 (148)
Q Consensus 54 ~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~------~--~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~ 125 (148)
....++ .|.+|-+....++|.+-....... . +...+..+.+++|++|++.++.+.++.++.+.|++...++
T Consensus 2 r~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~ 80 (121)
T PF13279_consen 2 RWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFE 80 (121)
T ss_dssp -GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEE
T ss_pred CHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEE
Confidence 345688 999999999999999755444211 1 2256789999999999999999999999999999999999
Q ss_pred EEEEECCCCcE--EEEEEEEEE
Q 032065 126 VEVKRKGNGEL--IALGKNWMT 145 (148)
Q Consensus 126 ~~i~~~~~g~l--vA~a~~t~~ 145 (148)
-++++..+|+. +|+|..++.
T Consensus 81 ~~i~~~~~g~~~~~a~~~~~~v 102 (121)
T PF13279_consen 81 QEIFRPADGKGELAATGRTVMV 102 (121)
T ss_dssp EEEEECSTTEEEEEEEEEEEEE
T ss_pred EEEEEcCCCceEEEEEEEEEEE
Confidence 99998434544 999987765
No 36
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=98.60 E-value=4.7e-07 Score=70.04 Aligned_cols=78 Identities=9% Similarity=0.042 Sum_probs=64.8
Q ss_pred CcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEE
Q 032065 62 GNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGK 141 (148)
Q Consensus 62 G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~ 141 (148)
..++||.+++.+=.++...+ . ....-.+++++|++|+..+.++.++.+++|.||+.+..+++++++ |+++..++
T Consensus 21 ~~~fGG~~~Aqal~Aa~~tv---~-~~~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q~--g~~~~~a~ 94 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKTV---P-EEFIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQH--GKTIFTLQ 94 (271)
T ss_pred CceEccHHHHHHHHHHHhcC---C-CCCCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEEC--CEEEEEEE
Confidence 58999999998655544332 2 223344899999999988999999999999999999999999964 89999999
Q ss_pred EEEE
Q 032065 142 NWMT 145 (148)
Q Consensus 142 ~t~~ 145 (148)
++|.
T Consensus 95 asf~ 98 (271)
T TIGR00189 95 ASFQ 98 (271)
T ss_pred EEcc
Confidence 9986
No 37
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=98.48 E-value=3.1e-06 Score=67.76 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=75.4
Q ss_pred EEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEE-EeeeeecccCCCEEEEEEEEEe
Q 032065 38 QAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDL-TISLYYSAKIQEEVEIEAKVVG 116 (148)
Q Consensus 38 ~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~ 116 (148)
......+..+....-+.|++.|.+|.+|||+++-++++.+...+..+.+....+.++ .++|.+|+..|..|.+.+.|..
T Consensus 191 ~~~~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~~~p~~rsVD~i~F~~pVdvG~~L~f~s~V~y 270 (357)
T KOG2763|consen 191 KMVWMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKGRPATRSVDDIEFQKPVDVGCVLTFSSFVTY 270 (357)
T ss_pred cceEeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcCCCceEEEechhhccCcceeeeEEEEeeEEEE
Confidence 444555666777777799999999999999999999999988888776555566666 5999999999999999999999
Q ss_pred ecCcEEEEEEEEE
Q 032065 117 SRGKLTSVLVEVK 129 (148)
Q Consensus 117 ~gr~~~~~~~~i~ 129 (148)
.-.+..+++++..
T Consensus 271 T~~k~~~vqv~~~ 283 (357)
T KOG2763|consen 271 TDNKSIYVQVKAV 283 (357)
T ss_pred ecCCceeEEEEEe
Confidence 9877566666655
No 38
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=98.40 E-value=1.1e-05 Score=55.25 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=59.4
Q ss_pred cchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCc-EEEEEEEEEECCCCcEEEEEE
Q 032065 63 NWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGK-LTSVLVEVKRKGNGELIALGK 141 (148)
Q Consensus 63 ~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~-~~~~~~~i~~~~~g~lvA~a~ 141 (148)
.+||...++++....... .+......+++++|++|+..|++|.++++|....+. ++.+++++.+ ++|+++.+++
T Consensus 45 ia~G~~~~~~~~~~~~~~----~~~~~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~n-q~G~~v~~g~ 119 (123)
T cd03455 45 YVNGPTLAGLVIRYVTDW----AGPDARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARN-SEGDHVMAGT 119 (123)
T ss_pred EEEHHHHHHHHHHHHHHc----cCCcceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEc-CCCCEEEeEE
Confidence 589999999987654321 122234567899999999999999999999865333 7778888885 5899999999
Q ss_pred EEE
Q 032065 142 NWM 144 (148)
Q Consensus 142 ~t~ 144 (148)
++.
T Consensus 120 a~v 122 (123)
T cd03455 120 ATV 122 (123)
T ss_pred EEE
Confidence 875
No 39
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=98.34 E-value=1.6e-05 Score=54.01 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=63.9
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecC----cEEEEEEEEEECCCCc
Q 032065 60 QDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRG----KLTSVLVEVKRKGNGE 135 (148)
Q Consensus 60 ~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr----~~~~~~~~i~~~~~g~ 135 (148)
+.-++||..+++++.......... +........+++|++|+..|++|.++++|..... ....+++++.++ +|+
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~-~g~ 117 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWLPG--TDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQ-GGE 117 (127)
T ss_pred CCceechHHHHHHHHhhhhhhccC--cccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeC-CCC
Confidence 457899999999988765432211 1345677889999999999999999999988753 578889999964 789
Q ss_pred EEEEEEEEE
Q 032065 136 LIALGKNWM 144 (148)
Q Consensus 136 lvA~a~~t~ 144 (148)
++..|+.+.
T Consensus 118 ~v~~g~~~~ 126 (127)
T cd03441 118 VVLSGEATV 126 (127)
T ss_pred EEEEEEEEe
Confidence 888887654
No 40
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=98.33 E-value=3.2e-05 Score=53.56 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=61.6
Q ss_pred CcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEE
Q 032065 62 GNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGK 141 (148)
Q Consensus 62 G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~ 141 (148)
=++||-..++++-.+.+- ....+......+++++|++|+..|++|.++.++.........++.+++++++|+++..|+
T Consensus 43 ~iahG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq~~g~~V~~g~ 120 (126)
T cd03447 43 TITHGMYTSAAVRALVET--WAADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNEETGELVLRGE 120 (126)
T ss_pred CeechhHHHHHHHHHHHH--hccCCCcceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEECCCCCEEEEEE
Confidence 358998888887554322 111123345566899999999999999999999987666778899999764489999998
Q ss_pred EEEE
Q 032065 142 NWMT 145 (148)
Q Consensus 142 ~t~~ 145 (148)
++..
T Consensus 121 ~~v~ 124 (126)
T cd03447 121 AEVE 124 (126)
T ss_pred EEEe
Confidence 8764
No 41
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=98.30 E-value=1.3e-05 Score=62.77 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=65.6
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEE
Q 032065 61 DGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALG 140 (148)
Q Consensus 61 ~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a 140 (148)
...++||.+++.+=.++...+ +....--+++.+|++|+..+.+|..+.+.+|.||+.+..+++++++ |+++..+
T Consensus 31 ~r~~fGGqv~AQal~AA~~tv----~~~~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q~--g~~if~~ 104 (286)
T PRK10526 31 LRQVFGGQVVGQALYAAKETV----PEERLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQN--GKPIFYM 104 (286)
T ss_pred CCceechHHHHHHHHHHHhcC----CCCCCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEEC--CEEEEEE
Confidence 567999999988655444332 2233567899999999988999999999999999999999999974 8999999
Q ss_pred EEEEE
Q 032065 141 KNWMT 145 (148)
Q Consensus 141 ~~t~~ 145 (148)
+.+|.
T Consensus 105 ~~sF~ 109 (286)
T PRK10526 105 TASFQ 109 (286)
T ss_pred EEEec
Confidence 99886
No 42
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=98.30 E-value=0.00016 Score=49.39 Aligned_cols=105 Identities=9% Similarity=-0.017 Sum_probs=76.0
Q ss_pred EEEEeeC-CEEEEEEEccCCC---CCCC---CcchHHHHHHHHHHHhHHHHHhcc------CCceEEEE-EEeeeeeccc
Q 032065 38 QAVELRT-GFLRCYFVIPIHA---ADQD---GNWHAGAIATLIDGLGALTVNSFT------GKSKASVD-LTISLYYSAK 103 (148)
Q Consensus 38 ~~~~~~~-g~~~~~~~v~~~~---~n~~---G~lHGG~la~l~D~~~~~a~~~~~------~~~~vT~~-l~i~fl~p~~ 103 (148)
++...++ +.++++..+.+++ .+++ +.+=|=++..++=.+++....... .+...... -+++|++|+.
T Consensus 11 ~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~ 90 (131)
T cd00493 11 RVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVL 90 (131)
T ss_pred EEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcC
Confidence 4566666 7888888886543 2222 566666666666666555554321 12234333 4899999999
Q ss_pred CCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEE
Q 032065 104 IQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWM 144 (148)
Q Consensus 104 ~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~ 144 (148)
.|+.+.+++++...+...+.++++++++ |+++++++.++
T Consensus 91 pgd~l~i~~~i~~~~~~~~~~~~~~~~~--g~~v~~~~~~~ 129 (131)
T cd00493 91 PGDTLTLEVELLKVRRGLGKFDGRAYVD--GKLVAEAELMA 129 (131)
T ss_pred CCCEEEEEEEEEEeeCCEEEEEEEEEEC--CEEEEEEEEEE
Confidence 9999999999999998999999999964 99999999554
No 43
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=98.22 E-value=0.00025 Score=49.53 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=73.5
Q ss_pred EEEEee-CCEEEEEEEccCCC---CCC---CCcchHHHHHHHHHHHhHHHHH-hcc---C--CceEEEEE-Eeeeeeccc
Q 032065 38 QAVELR-TGFLRCYFVIPIHA---ADQ---DGNWHAGAIATLIDGLGALTVN-SFT---G--KSKASVDL-TISLYYSAK 103 (148)
Q Consensus 38 ~~~~~~-~g~~~~~~~v~~~~---~n~---~G~lHGG~la~l~D~~~~~a~~-~~~---~--~~~vT~~l-~i~fl~p~~ 103 (148)
++.+.+ ++.++.+..+.+++ .++ ...+=|=++..++-.+++..+. ... . .......+ +++|++|++
T Consensus 20 ~i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~ 99 (140)
T TIGR01750 20 RILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVV 99 (140)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccC
Confidence 345555 46788888776542 232 2345565666665555543331 111 1 23344443 899999999
Q ss_pred CCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 104 IQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 104 ~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
.|++|.+++++.+..++...++++++. +|+++|+|+.++.
T Consensus 100 pGd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~va~~~~~~~ 139 (140)
T TIGR01750 100 PGDQLILHAEFLKKRRKIGKFKGEATV--DGKVVAEAEITFA 139 (140)
T ss_pred CCCEEEEEEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 999999999999999999999999975 5999999998874
No 44
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.19 E-value=6.2e-05 Score=51.82 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=58.0
Q ss_pred CcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEee----cCcEEEEEEEEEECCCCcEE
Q 032065 62 GNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGS----RGKLTSVLVEVKRKGNGELI 137 (148)
Q Consensus 62 G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~----gr~~~~~~~~i~~~~~g~lv 137 (148)
=.+||-..++++...... ... ....-.+++++|++|+..||+|.++++|... ++..+.++.+++| ++|+++
T Consensus 45 ~i~~G~~~~~~~~~~~~~---~~~-~~~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~n-q~g~~v 119 (127)
T cd03453 45 VIAHGMLTMGLLGRLVTD---WVG-DPGRVVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATD-QAGGKK 119 (127)
T ss_pred cEecHHHHHHHHHHHHHH---HcC-CccceEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEE-cCCCEE
Confidence 368888888887544322 121 1223367889999999999999999999643 4468889999996 478999
Q ss_pred EEEEEEE
Q 032065 138 ALGKNWM 144 (148)
Q Consensus 138 A~a~~t~ 144 (148)
.+|+++.
T Consensus 120 ~~g~a~v 126 (127)
T cd03453 120 VLGRAIV 126 (127)
T ss_pred EEEEEEE
Confidence 8998764
No 45
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.17 E-value=2.4e-05 Score=64.21 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=71.9
Q ss_pred EEEEeeCCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEee
Q 032065 38 QAVELRTGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGS 117 (148)
Q Consensus 38 ~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~ 117 (148)
.++..+++. ++-...+.. ...+.++||.+++.+=.++.. +. .....-.+++.+|++|...+.++..+.+++|.
T Consensus 137 ~l~~~~~~~--f~~~~~~~~-~~~~~~fGG~~~aqal~Aa~~---~~-~~~~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~ 209 (413)
T PLN02868 137 HLEPLEVDI--FRGITLPDA-PTFGKVFGGQLVGQALAAASK---TV-DPLKLVHSLHAYFLLVGDINLPIIYQVERIRD 209 (413)
T ss_pred CcEeccCCe--EECCcCCCC-cccccccchHHHHHHHHHHHc---cC-CCCCCceEeeeeecCCCCCCCCEEEEEEEEcC
Confidence 444455543 333333332 224789999999985444332 22 22234568899999999888899999999999
Q ss_pred cCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 118 RGKLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 118 gr~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
||+.+..+++.+++ |+++..+..+|..
T Consensus 210 Grs~~~r~v~~~Q~--g~~~~~~~~sf~~ 236 (413)
T PLN02868 210 GHNFATRRVDAIQK--GKVIFTLFASFQK 236 (413)
T ss_pred CCceEeeEEEEEEC--CeeEEEEeecccc
Confidence 99999999999964 8999999888753
No 46
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=98.11 E-value=0.00098 Score=46.74 Aligned_cols=106 Identities=8% Similarity=-0.038 Sum_probs=74.2
Q ss_pred EEEEeeCCEEEEEEEccCC--CCC-CCCcchHHHHHHHHHHHhHHHH-H-h--c--cCCceEEEEE-EeeeeecccC-CC
Q 032065 38 QAVELRTGFLRCYFVIPIH--AAD-QDGNWHAGAIATLIDGLGALTV-N-S--F--TGKSKASVDL-TISLYYSAKI-QE 106 (148)
Q Consensus 38 ~~~~~~~g~~~~~~~v~~~--~~n-~~G~lHGG~la~l~D~~~~~a~-~-~--~--~~~~~vT~~l-~i~fl~p~~~-g~ 106 (148)
++.+++++.+++...+..+ +.. +.+.+-|=.+...+=.+++... . . . .++.+.-..+ +++|.+|+.. |+
T Consensus 18 ~v~~~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd 97 (138)
T cd01289 18 RVISWDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGS 97 (138)
T ss_pred EEEEEcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCC
Confidence 3455667788887777543 222 3367777777666666654443 1 1 1 1233444444 8999999754 99
Q ss_pred EEEEEEEEEeecC-cEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 107 EVEIEAKVVGSRG-KLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 107 ~l~~~a~v~~~gr-~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
.+.++++..+..+ .+...+++++. +|+++|+|+.++.
T Consensus 98 ~l~i~~~~~~~~~~~~~~~~~~~~v--~~~~va~a~l~~~ 135 (138)
T cd01289 98 TLLIVVAELLQGDSGLGVFECTIED--QGGVLASGRLNVY 135 (138)
T ss_pred eeEEEeeeeeeCCCcEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 9999999999885 99999999996 4899999998765
No 47
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.08 E-value=5.9e-05 Score=52.47 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHHHhHHHHHhccCCceE---EEEEEeeeeecccCCCEEEEEEEEEeec------CcEEEEEEEEEECCC
Q 032065 63 NWHAGAIATLIDGLGALTVNSFTGKSKA---SVDLTISLYYSAKIQEEVEIEAKVVGSR------GKLTSVLVEVKRKGN 133 (148)
Q Consensus 63 ~lHGG~la~l~D~~~~~a~~~~~~~~~v---T~~l~i~fl~p~~~g~~l~~~a~v~~~g------r~~~~~~~~i~~~~~ 133 (148)
.+||..+++++..... ........+ ...-+++|++|+..|++|.++++|.+.. +.++.+++++++ ++
T Consensus 52 ia~G~~~~a~~~~~~~---~~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~n-q~ 127 (140)
T cd03446 52 IAHGLLTLSIATGLLQ---RLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVN-QR 127 (140)
T ss_pred eeccccHHHHHhhHhh---hcccccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEc-CC
Confidence 6788777766543321 111111111 1122899999999999999999998663 246788888885 58
Q ss_pred CcEEEEEEEEE
Q 032065 134 GELIALGKNWM 144 (148)
Q Consensus 134 g~lvA~a~~t~ 144 (148)
|+++++++.+.
T Consensus 128 g~~v~~~~~~~ 138 (140)
T cd03446 128 GEVVQSGEMSL 138 (140)
T ss_pred CCEEEEEEEee
Confidence 99999998775
No 48
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=98.04 E-value=6.3e-05 Score=52.67 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=55.5
Q ss_pred CcchHHHHHHHHHHHhHHHHHhccCCceEEEE-EEeeeeecccCCCEEEEEEEEEeecC-------cEEEEEEEEEECCC
Q 032065 62 GNWHAGAIATLIDGLGALTVNSFTGKSKASVD-LTISLYYSAKIQEEVEIEAKVVGSRG-------KLTSVLVEVKRKGN 133 (148)
Q Consensus 62 G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~-l~i~fl~p~~~g~~l~~~a~v~~~gr-------~~~~~~~~i~~~~~ 133 (148)
=.+||..+.+++-. .......+....-.. .+++|++|+..|++|.++++|...-. .++.+++++++ ++
T Consensus 54 ~ia~G~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~ 129 (146)
T cd03451 54 RLVNSLFTLSLALG---LSVNDTSLTAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYN-QD 129 (146)
T ss_pred ccccHHhHHHHHhh---heehhccccceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEEC-CC
Confidence 36888888776532 111111111111122 38999999999999999999986532 48888899984 58
Q ss_pred CcEEEEEEEEEEe
Q 032065 134 GELIALGKNWMTS 146 (148)
Q Consensus 134 g~lvA~a~~t~~~ 146 (148)
|+++++++.+...
T Consensus 130 g~~V~~~~~~~~~ 142 (146)
T cd03451 130 GEPVLSFERTALV 142 (146)
T ss_pred CCEEEEEEehhEE
Confidence 9999999987653
No 49
>COG5496 Predicted thioesterase [General function prediction only]
Probab=97.95 E-value=0.0012 Score=45.52 Aligned_cols=81 Identities=10% Similarity=0.126 Sum_probs=70.1
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhccC--CceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEE
Q 032065 61 DGNWHAGAIATLIDGLGALTVNSFTG--KSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIA 138 (148)
Q Consensus 61 ~G~lHGG~la~l~D~~~~~a~~~~~~--~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA 138 (148)
...+--+.+..++..++-..+..+.+ ...|-.+.+++.++|++.|.++.+.+++.+..+|....+.+... +|..+-
T Consensus 28 ~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~~--~~~~Ig 105 (130)
T COG5496 28 LNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAME--GGDKIG 105 (130)
T ss_pred cceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEeccEEEEEEEEee--CCcEEe
Confidence 46677899999999998888876653 46677889999999999999999999999999998888888883 589999
Q ss_pred EEEEE
Q 032065 139 LGKNW 143 (148)
Q Consensus 139 ~a~~t 143 (148)
+|+||
T Consensus 106 ~g~h~ 110 (130)
T COG5496 106 EGTHT 110 (130)
T ss_pred eeEEE
Confidence 99887
No 50
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.94 E-value=0.00038 Score=46.53 Aligned_cols=82 Identities=24% Similarity=0.127 Sum_probs=68.5
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhccCC------ceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCC
Q 032065 61 DGNWHAGAIATLIDGLGALTVNSFTGK------SKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNG 134 (148)
Q Consensus 61 ~G~lHGG~la~l~D~~~~~a~~~~~~~------~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g 134 (148)
.-.+|=.+++.+.|......+....+. ...|++-++.|.+|....+.+..+.+..+.+...+..++++++ ++|
T Consensus 14 d~~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~-~~G 92 (104)
T cd03444 14 DPRLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFT-RDG 92 (104)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEEC-CCC
Confidence 346889999999999876555543332 4578899999999999889999999999999999999999995 589
Q ss_pred cEEEEEEEE
Q 032065 135 ELIALGKNW 143 (148)
Q Consensus 135 ~lvA~a~~t 143 (148)
+++|+....
T Consensus 93 ~LvAs~~Q~ 101 (104)
T cd03444 93 ELVASVAQE 101 (104)
T ss_pred CEEEEEEEe
Confidence 999998754
No 51
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=97.93 E-value=0.0014 Score=45.70 Aligned_cols=93 Identities=10% Similarity=0.015 Sum_probs=60.9
Q ss_pred EEEEEEccCCC------CCCCCcchHHHHHHHHHHHhHHHHHhcc-----CC---ce-EEEEEEeeeeecccCCC-EEEE
Q 032065 47 LRCYFVIPIHA------ADQDGNWHAGAIATLIDGLGALTVNSFT-----GK---SK-ASVDLTISLYYSAKIQE-EVEI 110 (148)
Q Consensus 47 ~~~~~~v~~~~------~n~~G~lHGG~la~l~D~~~~~a~~~~~-----~~---~~-vT~~l~i~fl~p~~~g~-~l~~ 110 (148)
++.+..+.+++ -.....+=|-++...+=.++++.+.... +. .. ...--+++|++|+..|+ .+.+
T Consensus 27 ~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~ 106 (138)
T PF07977_consen 27 IVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGDKTLRI 106 (138)
T ss_dssp EEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE-EEEE
T ss_pred EEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCCcEEEE
Confidence 77777775432 2334667777777565555555554331 11 11 22334899999999999 9999
Q ss_pred EEEEEe---ecCcEEEEEEEEEECCCCcEEEEEE
Q 032065 111 EAKVVG---SRGKLTSVLVEVKRKGNGELIALGK 141 (148)
Q Consensus 111 ~a~v~~---~gr~~~~~~~~i~~~~~g~lvA~a~ 141 (148)
++++.+ ..+..+.++++++.+ |++++++.
T Consensus 107 ~v~i~~~~~~~~~~~~~~~~~~vd--g~~v~~~~ 138 (138)
T PF07977_consen 107 EVEIKKIRRREGGMAIFDGTAYVD--GELVAEAE 138 (138)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEET--TEEEEEEE
T ss_pred EEEEEEeecccCCEEEEEEEEEEC--CEEEEEEC
Confidence 999999 899999999999975 99999874
No 52
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.92 E-value=0.00017 Score=50.30 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=43.0
Q ss_pred EEeeeeecccCCCEEEEEEEEEee-------cCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 94 LTISLYYSAKIQEEVEIEAKVVGS-------RGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 94 l~i~fl~p~~~g~~l~~~a~v~~~-------gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
.+++|++|+..|++|.++++|.+. ++.++.+++++++ ++|+++++++.+..
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~~~~ 138 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLN-QRGEVVLTFEATVL 138 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEc-CCCCEEEEEEehhe
Confidence 489999999999999999999755 3457888999985 58999999987753
No 53
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=97.91 E-value=0.0012 Score=55.19 Aligned_cols=106 Identities=8% Similarity=0.033 Sum_probs=75.2
Q ss_pred EEEeeCCEEEEEEEccCC--CC-C---CCCcchHHHHHHHHHHHhHHHHHhc-c---CCceEEEEE-EeeeeecccCCCE
Q 032065 39 AVELRTGFLRCYFVIPIH--AA-D---QDGNWHAGAIATLIDGLGALTVNSF-T---GKSKASVDL-TISLYYSAKIQEE 107 (148)
Q Consensus 39 ~~~~~~g~~~~~~~v~~~--~~-n---~~G~lHGG~la~l~D~~~~~a~~~~-~---~~~~vT~~l-~i~fl~p~~~g~~ 107 (148)
+.+.+++.++....+..+ +. + ....++|=++..++=.+++..+... . +....-..+ +++|++|+..|++
T Consensus 342 Il~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDt 421 (464)
T PRK13188 342 IIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDT 421 (464)
T ss_pred EeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCE
Confidence 344556777777777442 22 2 3467888877766666666554322 1 122334454 8999999999999
Q ss_pred EEEEEEEEe-ecCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 108 VEIEAKVVG-SRGKLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 108 l~~~a~v~~-~gr~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
|.+++++++ ..+.++.++++++. +|+++++|+.++.-
T Consensus 422 L~I~veI~~~~~~giv~f~g~~~v--dGelVaeael~~~v 459 (464)
T PRK13188 422 LIFKVELLSPIRRGICQMQGKAYV--NGKLVCEAELMAQI 459 (464)
T ss_pred EEEEEEEEEEecCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 999999987 55678899999995 59999999988753
No 54
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=97.90 E-value=0.00025 Score=49.84 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=55.5
Q ss_pred cchHHHHHHHHHHHhHHHHHhccCCceEEEE---EEeeeeecccCCCEEEEEEEEEeec--C----cEEEEEEEEEECCC
Q 032065 63 NWHAGAIATLIDGLGALTVNSFTGKSKASVD---LTISLYYSAKIQEEVEIEAKVVGSR--G----KLTSVLVEVKRKGN 133 (148)
Q Consensus 63 ~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~---l~i~fl~p~~~g~~l~~~a~v~~~g--r----~~~~~~~~i~~~~~ 133 (148)
.+||...++++..... .. .......+ -+++|++|+..||+|.++.+|...- + .++.+++++.| ++
T Consensus 52 ia~G~l~~s~~~~l~~---~~--~~~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~ 125 (142)
T cd03452 52 VAHGYFVLSAAAGLFV---DP--APGPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTN-QN 125 (142)
T ss_pred eecHHHHHHHHhhhCc---cC--CcccEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEe-cC
Confidence 6888888888765321 11 11122222 3899999999999999999998762 1 37788899985 57
Q ss_pred CcEEEEEEEEEE
Q 032065 134 GELIALGKNWMT 145 (148)
Q Consensus 134 g~lvA~a~~t~~ 145 (148)
|+++.+++.++.
T Consensus 126 g~~V~~~~~~~~ 137 (142)
T cd03452 126 GELVASYDILTL 137 (142)
T ss_pred CCEEEEEEehHe
Confidence 999999987654
No 55
>PLN02370 acyl-ACP thioesterase
Probab=97.83 E-value=0.003 Score=52.14 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=81.1
Q ss_pred EEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc---------------CCceEEEEEEeeeeecccCCCEEEEEE
Q 032065 48 RCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT---------------GKSKASVDLTISLYYSAKIQEEVEIEA 112 (148)
Q Consensus 48 ~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~---------------~~~~vT~~l~i~fl~p~~~g~~l~~~a 112 (148)
+-.+.|....++..|.+.=..++-++-+++...+...+ +..-|....+++|.||...|++|.+++
T Consensus 141 ~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~T 220 (419)
T PLN02370 141 RQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDT 220 (419)
T ss_pred EEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEEE
Confidence 45677788889999999999998888887766653221 124578889999999999999999999
Q ss_pred EEEeecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 113 KVVGSRGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 113 ~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
++...+|..+..+.+|++.++|++++.|+.++.
T Consensus 221 wv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV 253 (419)
T PLN02370 221 WVSASGKNGMRRDWLVRDCKTGETLTRASSVWV 253 (419)
T ss_pred EEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEE
Confidence 999999999999999996557999999987653
No 56
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=97.79 E-value=0.00038 Score=50.07 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=46.1
Q ss_pred EEEEEEeeeeecccCCCEEEEEEEEEee----cCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 90 ASVDLTISLYYSAKIQEEVEIEAKVVGS----RGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 90 vT~~l~i~fl~p~~~g~~l~~~a~v~~~----gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
+-.+.+++|++|+..||+|.++.+|... ++.++.++++++| ++|++|.++++++.
T Consensus 85 ~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~N-q~Ge~V~~~~~~~~ 143 (159)
T PRK13692 85 VQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTN-EEGDVVQETYTTLA 143 (159)
T ss_pred EeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEc-CCCCEEEEEEEEEE
Confidence 3445689999999999999999999743 4578999999995 58999999998875
No 57
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=97.73 E-value=0.00086 Score=56.08 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=60.0
Q ss_pred cchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEee--cCcEEEEEEEEEECCCCcEEEEE
Q 032065 63 NWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGS--RGKLTSVLVEVKRKGNGELIALG 140 (148)
Q Consensus 63 ~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~--gr~~~~~~~~i~~~~~g~lvA~a 140 (148)
.+||-.+++++....+. ...+...+....+++|++|+..||+|.++.+|... ++.++.+++++++ ++|+++.++
T Consensus 60 IahG~l~~s~~~~l~~~---~~~g~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~n-q~G~~V~~g 135 (466)
T PRK08190 60 VAHGMWGGALISAVLGT---RLPGPGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTN-QDGEVVITG 135 (466)
T ss_pred eeCHHHHHHHHHHHHhh---hCCCcceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEe-CCCCEEEEE
Confidence 68998888876543221 22233445567899999999999999999999754 5567888889996 589999999
Q ss_pred EEEEE
Q 032065 141 KNWMT 145 (148)
Q Consensus 141 ~~t~~ 145 (148)
+.++.
T Consensus 136 ~~~~l 140 (466)
T PRK08190 136 TAEVI 140 (466)
T ss_pred EEEee
Confidence 88764
No 58
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=97.65 E-value=0.0072 Score=43.09 Aligned_cols=96 Identities=13% Similarity=-0.075 Sum_probs=68.7
Q ss_pred CEEEEEEEccCC--CCC----CCCcchHHHHHHHHHHHhHHHHHhccC-----C---ceEEE-EEEeeeeecccCCC-EE
Q 032065 45 GFLRCYFVIPIH--AAD----QDGNWHAGAIATLIDGLGALTVNSFTG-----K---SKASV-DLTISLYYSAKIQE-EV 108 (148)
Q Consensus 45 g~~~~~~~v~~~--~~n----~~G~lHGG~la~l~D~~~~~a~~~~~~-----~---~~vT~-~l~i~fl~p~~~g~-~l 108 (148)
|+++.+..+.++ +.. ....+-|=++...+=.++++.+..... . ..+.. --+++|.+|+..|+ .|
T Consensus 27 g~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l 106 (150)
T cd01287 27 GYLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKV 106 (150)
T ss_pred cEEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEE
Confidence 367887777543 333 346677777777777776665543221 1 12222 23799999999898 89
Q ss_pred EEEEEEEeecC----cEEEEEEEEEECCCCcEEEEEEE
Q 032065 109 EIEAKVVGSRG----KLTSVLVEVKRKGNGELIALGKN 142 (148)
Q Consensus 109 ~~~a~v~~~gr----~~~~~~~~i~~~~~g~lvA~a~~ 142 (148)
.+++++.+.++ +++..++.++. +|+++++++.
T Consensus 107 ~~e~~i~~~~~~~~~~~~~~~~~~~v--dg~~v~~a~~ 142 (150)
T cd01287 107 TYEVHIKEVGRDGPRPYIIADASLWV--DGLRIYEAKD 142 (150)
T ss_pred EEEEEEEEEEccCCccEEEEEEEEEE--CCEEEEEEEc
Confidence 99999999874 99999999996 4999999974
No 59
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=97.61 E-value=0.0011 Score=51.30 Aligned_cols=80 Identities=20% Similarity=0.113 Sum_probs=63.4
Q ss_pred CcchHHHHHHHHHHHh-HHHHHhccC-----CceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCc
Q 032065 62 GNWHAGAIATLIDGLG-ALTVNSFTG-----KSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGE 135 (148)
Q Consensus 62 G~lHGG~la~l~D~~~-~~a~~~~~~-----~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~ 135 (148)
-.+|=-.++.+.|... ..++..... ....+++.+++|++|++.++++..+++....+.-....+++++ +.+|+
T Consensus 181 ~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~-d~~G~ 259 (271)
T TIGR00189 181 PRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIF-TRDGV 259 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEE-CCCCC
Confidence 3557889999999832 333333221 1346889999999998889999999999999999999999999 57999
Q ss_pred EEEEEEE
Q 032065 136 LIALGKN 142 (148)
Q Consensus 136 lvA~a~~ 142 (148)
+||+.+-
T Consensus 260 lvAs~~Q 266 (271)
T TIGR00189 260 LIASTVQ 266 (271)
T ss_pred EEEEEEe
Confidence 9999864
No 60
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=97.56 E-value=0.00089 Score=48.54 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=44.5
Q ss_pred EEEEeeeeecccCCCEEEEEEEEEee----cCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 92 VDLTISLYYSAKIQEEVEIEAKVVGS----RGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 92 ~~l~i~fl~p~~~g~~l~~~a~v~~~----gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
.+-+.+|++|+..||+|.++.+|... ++.++.++.++.| ++|++|++++.++.
T Consensus 87 ~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~N-Q~Ge~V~~~~~~~~ 143 (166)
T PRK13691 87 VDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTN-DDGELVMEAYTTLM 143 (166)
T ss_pred eeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEC-CCCCEEEEEEEEEE
Confidence 34578899999999999999999755 4468889999995 68999999998875
No 61
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=97.28 E-value=0.0018 Score=44.19 Aligned_cols=66 Identities=15% Similarity=0.031 Sum_probs=43.1
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEE
Q 032065 61 DGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEV 128 (148)
Q Consensus 61 ~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i 128 (148)
.-.+||-.+++++-.......... .......++++|++|+..|++|.+++++.......-...+++
T Consensus 50 ~~ivhG~~~~a~~~~~~~~~~~~~--~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~ 115 (122)
T PF01575_consen 50 GPIVHGMLTLALASGLLGDWLGPN--PPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTV 115 (122)
T ss_dssp SSB-BHHHHHHHHHHHHHHHHSTT--ECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred CEEEccHHHHHHHHHHHHHhccCc--cceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEEEE
Confidence 458999999988765443322211 245678899999999999999999999987544333333333
No 62
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=97.27 E-value=0.013 Score=41.35 Aligned_cols=78 Identities=8% Similarity=0.036 Sum_probs=53.0
Q ss_pred CcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCC-----CEEEEEEEEEee--cCcEEEEEEEEEECCCC
Q 032065 62 GNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQ-----EEVEIEAKVVGS--RGKLTSVLVEVKRKGNG 134 (148)
Q Consensus 62 G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g-----~~l~~~a~v~~~--gr~~~~~~~~i~~~~~g 134 (148)
=++||-..++++-..... ...+...+ .+++++|.+|+..| +++.++++|... +++.+.+++.+.++ ++
T Consensus 55 ~iahG~~~~a~~~~~~~~---~~~~~~~~-~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~~-~~ 129 (142)
T PRK13693 55 AIAHGMLTMGLGGGYVTS---WVGDPGAV-TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTG-GK 129 (142)
T ss_pred cEecHHHHHHHHHHHHHH---hcCCCcce-EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEEC-Cc
Confidence 468999988887764322 11222223 47899999999864 389999999864 66788888888854 45
Q ss_pred cEEEEEEEEE
Q 032065 135 ELIALGKNWM 144 (148)
Q Consensus 135 ~lvA~a~~t~ 144 (148)
+++..|++..
T Consensus 130 ~~~~~~~~~~ 139 (142)
T PRK13693 130 KIFGRAIASA 139 (142)
T ss_pred EEEEEEEEEE
Confidence 5565555543
No 63
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.23 E-value=0.0062 Score=49.07 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=76.2
Q ss_pred ccCCCCCCCCcchHH-HHHHHHHHHhHHHHHhcc-------C--CceEEEEE-EeeeeecccCC-CEEEEEEEEEeecCc
Q 032065 53 IPIHAADQDGNWHAG-AIATLIDGLGALTVNSFT-------G--KSKASVDL-TISLYYSAKIQ-EEVEIEAKVVGSRGK 120 (148)
Q Consensus 53 v~~~~~n~~G~lHGG-~la~l~D~~~~~a~~~~~-------~--~~~vT~~l-~i~fl~p~~~g-~~l~~~a~v~~~gr~ 120 (148)
+.|.+.|..|..++| -+.-|+|+...+|.+.+. . ...||.+. .++|.+|...+ ..+.+.|.|...|++
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~s 94 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKS 94 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEecccc
Confidence 556778888999999 699999999888775332 1 23568777 69999987766 677888999999999
Q ss_pred EEEEEEEEEEC----CCCcEEEEEEEEEEec
Q 032065 121 LTSVLVEVKRK----GNGELIALGKNWMTSK 147 (148)
Q Consensus 121 ~~~~~~~i~~~----~~g~lvA~a~~t~~~~ 147 (148)
.+-+.+.+.++ ....++-+|.+||.++
T Consensus 95 SMEv~i~V~q~~~~~~~~~~~~kA~f~fVar 125 (357)
T KOG2763|consen 95 SMEVSIYVMQEDLATGEKSLVLKATFTFVAR 125 (357)
T ss_pred ceEEEEEEEEehhccchhhheeeeEEEEEEe
Confidence 99999999971 1348899999999875
No 64
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=97.22 E-value=0.026 Score=43.60 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=71.1
Q ss_pred EEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhcc---------------CCceEEEEEEeeeeecccCCCEEEEEEE
Q 032065 49 CYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFT---------------GKSKASVDLTISLYYSAKIQEEVEIEAK 113 (148)
Q Consensus 49 ~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~---------------~~~~vT~~l~i~fl~p~~~g~~l~~~a~ 113 (148)
-.+.+....+++.|.+.=-.++.++-++++..+...+ +..-|.....+++.++.+.|++|.++++
T Consensus 6 ~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i~i~Tw 85 (261)
T PF01643_consen 6 KEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKITIETW 85 (261)
T ss_dssp EEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EEEEEEE
T ss_pred EEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEEEEEEE
Confidence 4677888899999999999999999888776664332 1134667788999999999999999999
Q ss_pred EEeecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 114 VVGSRGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 114 v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
+...+|-.+.-+.++++.++|+++++|+..+.
T Consensus 86 ~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~Wv 117 (261)
T PF01643_consen 86 PSGFKRFFAYRDFEIYDAEDGELLARATSIWV 117 (261)
T ss_dssp EEEE-SSEEEEEEEEE--TTS-EEEEEEEEEE
T ss_pred eccCCCcEEEEEEEEEECCCCcEEEEEEEEEE
Confidence 99999999999999995268999999987654
No 65
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.19 E-value=0.0028 Score=48.28 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=56.6
Q ss_pred HHHHHHHHHhHHHHHhccC---CceEEEEEEeee-eecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEE
Q 032065 68 AIATLIDGLGALTVNSFTG---KSKASVDLTISL-YYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNW 143 (148)
Q Consensus 68 ~la~l~D~~~~~a~~~~~~---~~~vT~~l~i~f-l~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t 143 (148)
.++.+.|...........+ ...+|++++++| ..|...++++.++++....+.-.+..++++++ ++|++||.++.+
T Consensus 174 ~l~~~~D~~~~~~~~~~~~~~~~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d-~~G~lvA~~~Q~ 252 (255)
T PF13622_consen 174 ALAFLSDAFPPATLRAFSGPEWWFPATLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWD-EDGRLVASSRQE 252 (255)
T ss_dssp HHHHHCTCCHHHHHHCHTSS--B-EEEEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEEEE
T ss_pred HHHHHHHhcchhhccccCCccccccccceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEEC-CCCCEEEEEEEE
Confidence 3888888874443333333 244599999997 55666689999999999999999999999995 589999999865
Q ss_pred E
Q 032065 144 M 144 (148)
Q Consensus 144 ~ 144 (148)
.
T Consensus 253 ~ 253 (255)
T PF13622_consen 253 A 253 (255)
T ss_dssp E
T ss_pred e
Confidence 4
No 66
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=97.10 E-value=0.018 Score=40.97 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=54.8
Q ss_pred cchHHHHHHHHHHHhHHHHHhccCCceE---EEEEEeeeeecccCCCEEEEEEEEEee---cC--cEEEEEEEEEECCCC
Q 032065 63 NWHAGAIATLIDGLGALTVNSFTGKSKA---SVDLTISLYYSAKIQEEVEIEAKVVGS---RG--KLTSVLVEVKRKGNG 134 (148)
Q Consensus 63 ~lHGG~la~l~D~~~~~a~~~~~~~~~v---T~~l~i~fl~p~~~g~~l~~~a~v~~~---gr--~~~~~~~~i~~~~~g 134 (148)
.+||-..++++.....-... ...... -...+++|++|+..||+|.++.+|... .+ ..+++++++......
T Consensus 58 Ia~G~~t~sl~~~l~~~~~~--~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (149)
T cd03450 58 IAHGFLTLSLLPALTPQLFR--VEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGED 135 (149)
T ss_pred EECHHHHHHHHHHHHHhccc--CCCceEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCC
Confidence 68888888887665433211 111222 223489999999999999999999754 22 377888888876667
Q ss_pred cEEEEEEEEE
Q 032065 135 ELIALGKNWM 144 (148)
Q Consensus 135 ~lvA~a~~t~ 144 (148)
+.+..++-.+
T Consensus 136 ~p~~~~~~~~ 145 (149)
T cd03450 136 KPACVAEWIS 145 (149)
T ss_pred CceEEEEEEE
Confidence 8877776544
No 67
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=97.05 E-value=0.0029 Score=49.49 Aligned_cols=79 Identities=8% Similarity=0.077 Sum_probs=60.7
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEE
Q 032065 61 DGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALG 140 (148)
Q Consensus 61 ~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a 140 (148)
.--+.||.+.+-+=.+ +..+. ....+--++..+|++|.....+|.-..+.+|.||+.+..+++.++ .|++|..+
T Consensus 31 ~~~vFGGqvvaQAL~A---a~~TV-~~~r~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~aiQ--~g~~If~~ 104 (289)
T COG1946 31 LRRVFGGQVVAQALVA---ALRTV-PEDRVVHSLHSYFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAIQ--HGKLIFSA 104 (289)
T ss_pred CccccccchHHHHHHH---HHhhc-CCCCCcceehhhhcCCCCcCCceEEEEEeccCCCceEeEEEEEEE--CCEEEEEE
Confidence 3456778776653222 22232 333455678889999999999999999999999999999999996 49999999
Q ss_pred EEEEE
Q 032065 141 KNWMT 145 (148)
Q Consensus 141 ~~t~~ 145 (148)
++.|.
T Consensus 105 ~ASF~ 109 (289)
T COG1946 105 TASFQ 109 (289)
T ss_pred Eeecc
Confidence 98875
No 68
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=97.01 E-value=0.012 Score=46.26 Aligned_cols=80 Identities=13% Similarity=-0.011 Sum_probs=63.2
Q ss_pred CcchHHHHHHHHHHH-hHHHHHhccC------CceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCC
Q 032065 62 GNWHAGAIATLIDGL-GALTVNSFTG------KSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNG 134 (148)
Q Consensus 62 G~lHGG~la~l~D~~-~~~a~~~~~~------~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g 134 (148)
-.+|=-+++.+.|.- ...++..... ....+++-++.|++|++.++++..+.+....|....+.++++| +.+|
T Consensus 192 ~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~-~~~G 270 (286)
T PRK10526 192 LRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFY-TQDG 270 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEE-CCCC
Confidence 468888999888754 3334333321 1345778899999999999999999999999999999999999 5699
Q ss_pred cEEEEEEE
Q 032065 135 ELIALGKN 142 (148)
Q Consensus 135 ~lvA~a~~ 142 (148)
++||++.-
T Consensus 271 ~LvAs~~Q 278 (286)
T PRK10526 271 VLVASTVQ 278 (286)
T ss_pred CEEEEEEe
Confidence 99999864
No 69
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=96.91 E-value=0.021 Score=39.18 Aligned_cols=72 Identities=7% Similarity=-0.074 Sum_probs=46.9
Q ss_pred CcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEE
Q 032065 62 GNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALG 140 (148)
Q Consensus 62 G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a 140 (148)
=.+||-..++++.....-.. ..+....-...+++|.+|+..|++|.++.+. .++ .+.+++++.+ +|+++.++
T Consensus 45 ~iahG~~t~a~~~~~~~~~~--~~~~~~~~~~~~~rF~~PV~~gDtl~~~~~~--~~~-~v~~~~~~~~--~g~~v~~g 116 (122)
T cd03448 45 PILHGLCTYGFAARAVLEAF--ADGDPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKVVE--RDVVVLSN 116 (122)
T ss_pred ceehhHHHHHHHHHHHHHHh--cCCCcceeEEEEEEEcCCccCCCEEEEEEEE--eCC-EEEEEEEEcc--CCcEEEEC
Confidence 35888888887765432111 1122333456799999999999999998884 344 5566766653 56765554
No 70
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=96.89 E-value=0.086 Score=37.52 Aligned_cols=102 Identities=11% Similarity=0.095 Sum_probs=66.7
Q ss_pred eeCC-EEEEEEEcc--CCCCC-C--CCcchHHHHHH-HHHHHhHHHHHhccCC---ce--EEEEEEeeeeecccCCCEEE
Q 032065 42 LRTG-FLRCYFVIP--IHAAD-Q--DGNWHAGAIAT-LIDGLGALTVNSFTGK---SK--ASVDLTISLYYSAKIQEEVE 109 (148)
Q Consensus 42 ~~~g-~~~~~~~v~--~~~~n-~--~G~lHGG~la~-l~D~~~~~a~~~~~~~---~~--vT~~l~i~fl~p~~~g~~l~ 109 (148)
.++| .+.....++ +++.+ + ..-+-.|++-. .+=.+++..+...... .. ++++ +++|.+|+..|+.+.
T Consensus 29 ~~~g~~i~a~k~Vt~nepfF~gHFP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid-~~kF~~~V~PGd~l~ 107 (147)
T COG0764 29 DEEGKRIVAIKNVTINEPFFTGHFPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGID-NAKFKRPVLPGDQLE 107 (147)
T ss_pred ccCCcEEEEEEccCCCCCeeCCcCCCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEec-ceeecCccCCCCEEE
Confidence 4444 555555553 33333 2 24566666532 2223333433333221 22 2333 899999999999999
Q ss_pred EEEEEEeec-CcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 110 IEAKVVGSR-GKLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 110 ~~a~v~~~g-r~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
++.++++.+ +.+....++...+ |+++++|+..+.-
T Consensus 108 l~~~~~~~~~~~~~~~~~~a~Vd--g~~v~~a~~~~~~ 143 (147)
T COG0764 108 LEVKLLKSRRLGIGKAKGVATVD--GKVVAEAELLFAG 143 (147)
T ss_pred EEEEEEEecccceEEEEEEEEEC--CEEEEEEEEEEEE
Confidence 999999999 8888999999864 9999999988764
No 71
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=96.65 E-value=0.12 Score=35.65 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=67.8
Q ss_pred CCEEEEEEEccCCCC---CC-CCcchHHHHHHHHHHHhHHHHHhccC----CceEEEEEEeeeeecccCCCEEEEEEEEE
Q 032065 44 TGFLRCYFVIPIHAA---DQ-DGNWHAGAIATLIDGLGALTVNSFTG----KSKASVDLTISLYYSAKIQEEVEIEAKVV 115 (148)
Q Consensus 44 ~g~~~~~~~v~~~~~---n~-~G~lHGG~la~l~D~~~~~a~~~~~~----~~~vT~~l~i~fl~p~~~g~~l~~~a~v~ 115 (148)
++...+.+.++..|. .. .+-+.|=+++..+=.++........+ ...+-.+++++|.+++..+.++.++.++.
T Consensus 19 ~~~~~~~~~~p~~h~~~~dh~~dh~~gmll~Ea~RQa~~~~~h~~~~vp~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~ 98 (132)
T PF03756_consen 19 DGRFRARLQWPRSHPFFFDHPGDHVPGMLLLEAARQAGIALAHRFYGVPLDHQFVLTSLDFTFSRFAELDVPADLTVRIT 98 (132)
T ss_pred CCEEEEEEEcCCCCccccCCCCCccChHHHHHHHHHHHHHhhccccCCCCCceEEEEEEEEEEccccccCCCEEEEEEEE
Confidence 555566666654332 22 34566666666666655544443332 23467789999999998888888888776
Q ss_pred eecC-----cEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 116 GSRG-----KLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 116 ~~gr-----~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
.... +...+++++++ +|+++|+++.+++
T Consensus 99 ~~~~~~~~~~~~~~~v~~~q--~g~~~a~~~~~~t 131 (132)
T PF03756_consen 99 CRDRRGGRPRGLRFRVTVSQ--GGRVVATASMTFT 131 (132)
T ss_pred eccccCCccceEEEEEEEEE--CCEEEEEEEEEEE
Confidence 4333 47788899996 4999999999886
No 72
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=96.62 E-value=0.017 Score=40.25 Aligned_cols=79 Identities=18% Similarity=0.023 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHHHhHHHHH-hcc---CCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEE
Q 032065 63 NWHAGAIATLIDGLGALTVN-SFT---GKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIA 138 (148)
Q Consensus 63 ~lHGG~la~l~D~~~~~a~~-~~~---~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA 138 (148)
.+|-=+++.+-|...-..+. .++ ...-+|+|=++.|+||.+.+++|.-+.+--.......++++++++..+|++||
T Consensus 45 ~~h~~~laY~SD~~~L~tal~~H~~~~~~~~vSlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q~G~Lva 124 (131)
T PF02551_consen 45 RIHSCALAYASDFTLLDTALQPHGFGFPKFQVSLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQDGELVA 124 (131)
T ss_dssp CCCCCHHHHHCCCCCGGGGGCCGCCCCCCEEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEE
T ss_pred hHhHHHHHHHhHHhHHHhhhccccccccccEEecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecCCCCEEE
Confidence 46666777777765333332 222 12335888899999999999999999999999999999999999446899999
Q ss_pred EEE
Q 032065 139 LGK 141 (148)
Q Consensus 139 ~a~ 141 (148)
+..
T Consensus 125 s~~ 127 (131)
T PF02551_consen 125 SVV 127 (131)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 73
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=96.62 E-value=0.036 Score=43.46 Aligned_cols=81 Identities=12% Similarity=0.035 Sum_probs=66.1
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEE
Q 032065 59 DQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIA 138 (148)
Q Consensus 59 n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA 138 (148)
++.+.+.||.+++=+ ...|..+. +...+--+|+.+|++......+|.-..+-+|.||+.+.-.++.+++ |++|-
T Consensus 35 ~~~~~~fGG~i~sQa---LaAA~~TV-~e~f~p~SlH~YFI~~gd~~~pI~Y~V~rirdGr~F~~R~V~AvQ~--~k~If 108 (294)
T KOG3016|consen 35 IPSNHAYGGQIASQA---LAAASKTV-EEMFIPHSLHCYFILVGDPNIPIIYDVKRIRDGRNFATRSVDAVQK--GKTIF 108 (294)
T ss_pred ccCcccccceehHHH---HHHHHhcc-ccccccceeeeeeeecCCCCCceEEEeeeecCCceeEEEEEEEEEC--CeEEE
Confidence 778889999887643 33333333 3345677899999999999999999999999999999999999974 99999
Q ss_pred EEEEEEE
Q 032065 139 LGKNWMT 145 (148)
Q Consensus 139 ~a~~t~~ 145 (148)
.+...|-
T Consensus 109 ~~qiSF~ 115 (294)
T KOG3016|consen 109 TLQISFQ 115 (294)
T ss_pred EEEEEEc
Confidence 9988886
No 74
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=96.58 E-value=0.066 Score=38.35 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=53.2
Q ss_pred cchHHHHHHHHHHHhHHHHHhccCC-ceE-EEEEEeeeeecccCCCEEEEEEEEEeec----CcEEEEEEEEEECCCCcE
Q 032065 63 NWHAGAIATLIDGLGALTVNSFTGK-SKA-SVDLTISLYYSAKIQEEVEIEAKVVGSR----GKLTSVLVEVKRKGNGEL 136 (148)
Q Consensus 63 ~lHGG~la~l~D~~~~~a~~~~~~~-~~v-T~~l~i~fl~p~~~g~~l~~~a~v~~~g----r~~~~~~~~i~~~~~g~l 136 (148)
+.||-..++++ +++.+...... ... -.--+++|.+|+..|++|.++++++..- +.+..++.+.++ .+|++
T Consensus 69 iahG~~t~a~~---~~~~~~~~~~~~~~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~-~~g~~ 144 (159)
T COG2030 69 IAHGMLTLALA---MGLVVAALGDPSVGANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVN-QEGEL 144 (159)
T ss_pred ehhHHHHHHHH---HHHHHHhccCcceeeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEc-cCCcE
Confidence 56776666653 23223322211 111 2223899999999999999999998653 367778888885 47888
Q ss_pred EEEEEEEEEe
Q 032065 137 IALGKNWMTS 146 (148)
Q Consensus 137 vA~a~~t~~~ 146 (148)
+.....+...
T Consensus 145 v~~~~~~~~~ 154 (159)
T COG2030 145 VLTLEATVLV 154 (159)
T ss_pred EEEEEEeEeE
Confidence 8888776554
No 75
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=96.51 E-value=0.02 Score=39.23 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=36.4
Q ss_pred ceEEEEEEeeeeecccCCCEEEEEEEEEeecC-----cE--EEEEEEEEECCCCcEEEE
Q 032065 88 SKASVDLTISLYYSAKIQEEVEIEAKVVGSRG-----KL--TSVLVEVKRKGNGELIAL 139 (148)
Q Consensus 88 ~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr-----~~--~~~~~~i~~~~~g~lvA~ 139 (148)
..+=.+.++.|.+|++.|++|.++++|..... +. ..++.+++ +.+|++|++
T Consensus 74 ~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~-~~~Ge~v~t 131 (132)
T PF13452_consen 74 RLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYT-DQDGELVAT 131 (132)
T ss_dssp GEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE
T ss_pred hEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEE-CCCCCEEEe
Confidence 45667789999999999999999999854422 23 45567777 468999985
No 76
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=96.29 E-value=0.029 Score=48.98 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=54.7
Q ss_pred cchHHHHHHHHHHHhHHHHHhccCCceE-EEEEEeeeeecccCCCEEEEEEEEEeec------CcEEEEEEEEEECCCCc
Q 032065 63 NWHAGAIATLIDGLGALTVNSFTGKSKA-SVDLTISLYYSAKIQEEVEIEAKVVGSR------GKLTSVLVEVKRKGNGE 135 (148)
Q Consensus 63 ~lHGG~la~l~D~~~~~a~~~~~~~~~v-T~~l~i~fl~p~~~g~~l~~~a~v~~~g------r~~~~~~~~i~~~~~g~ 135 (148)
..||-..++++..... ....+.... ...-+++|++|+..||+|.++++|...- +.++.+++++++ ++|+
T Consensus 575 Ia~G~l~~sl~~~l~~---~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~n-q~G~ 650 (663)
T TIGR02278 575 VAHGYFVLSAAAGLFV---DPAPGPVLANYGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVN-QNGE 650 (663)
T ss_pred eeCHHHHHHHHHHHhh---ccCccchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEc-CCCC
Confidence 7888888888754321 111111111 1224899999999999999999997541 127888999985 5799
Q ss_pred EEEEEEEEEE
Q 032065 136 LIALGKNWMT 145 (148)
Q Consensus 136 lvA~a~~t~~ 145 (148)
++.+++.+..
T Consensus 651 ~Vl~~~~~~l 660 (663)
T TIGR02278 651 PVATYDVLTL 660 (663)
T ss_pred EEEEEEEHHh
Confidence 9999987653
No 77
>PLN02864 enoyl-CoA hydratase
Probab=96.21 E-value=0.12 Score=41.22 Aligned_cols=77 Identities=10% Similarity=-0.041 Sum_probs=50.3
Q ss_pred cchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEE
Q 032065 63 NWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKN 142 (148)
Q Consensus 63 ~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~ 142 (148)
++||-..++++-.+..-.. ..+......+++++|.+|+..|++|.++.+. .+ ..+.+++.+. ++|+++..|..
T Consensus 229 IaHGm~t~g~~~~~~~~~~--~~~~~~~~~~~~~rF~~PV~pGdtl~~~~~~--~~-~~v~~~~~~~--~~g~~vl~G~a 301 (310)
T PLN02864 229 ILHGLCTLGFAVRAVIKCF--CNGDPTAVKTISGRFLLHVYPGETLVTEMWL--EG-LRVIYQTKVK--ERNKAVLSGYV 301 (310)
T ss_pred eeccHHHHHHHHHHHHhhh--cCCCCceEEEEEEEEcCCccCCCEEEEEEEe--CC-CEEEEEEEEe--cCCeEEEEEEE
Confidence 5888777666544321111 1122234456899999999999999877764 33 4455666663 46888899988
Q ss_pred EEEe
Q 032065 143 WMTS 146 (148)
Q Consensus 143 t~~~ 146 (148)
+..+
T Consensus 302 ~~~~ 305 (310)
T PLN02864 302 DLRH 305 (310)
T ss_pred EEec
Confidence 8764
No 78
>PLN02868 acyl-CoA thioesterase family protein
Probab=96.19 E-value=0.047 Score=44.90 Aligned_cols=79 Identities=13% Similarity=-0.036 Sum_probs=62.8
Q ss_pred CcchHHHHHHHHHHHhHHHHH-hcc--CCc--eEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcE
Q 032065 62 GNWHAGAIATLIDGLGALTVN-SFT--GKS--KASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGEL 136 (148)
Q Consensus 62 G~lHGG~la~l~D~~~~~a~~-~~~--~~~--~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~l 136 (148)
-.+|-.+++.+.|......+. ... +.+ .++.+-++.|++|+..++++..+.+....+...++.++++| +.+|++
T Consensus 325 ~~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l~-~~~G~L 403 (413)
T PLN02868 325 QALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHMF-NRKGEL 403 (413)
T ss_pred HHHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEEECCccCCCcceEEEEEE-CCCCCE
Confidence 367888999999976433332 222 112 45777799999999999999999999999998899999999 468999
Q ss_pred EEEEE
Q 032065 137 IALGK 141 (148)
Q Consensus 137 vA~a~ 141 (148)
||+.+
T Consensus 404 vAs~~ 408 (413)
T PLN02868 404 VVSLT 408 (413)
T ss_pred EEEEE
Confidence 99875
No 79
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=96.10 E-value=0.34 Score=35.20 Aligned_cols=94 Identities=10% Similarity=-0.070 Sum_probs=61.8
Q ss_pred EEEEEEEccCCC---CCC---CCcchHHHHHHHHHHHhHHHHHhcc-CCceEEEE-EEeeeeecccCCCEE-EEEEEEEe
Q 032065 46 FLRCYFVIPIHA---ADQ---DGNWHAGAIATLIDGLGALTVNSFT-GKSKASVD-LTISLYYSAKIQEEV-EIEAKVVG 116 (148)
Q Consensus 46 ~~~~~~~v~~~~---~n~---~G~lHGG~la~l~D~~~~~a~~~~~-~~~~vT~~-l~i~fl~p~~~g~~l-~~~a~v~~ 116 (148)
.++.+..+.++. .++ ...+=|=++...+=.+++..+.... .....-.. =+.+|.+|+..|+.+ .++.++.+
T Consensus 51 ~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~ 130 (169)
T TIGR01749 51 YVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYRIHFKR 130 (169)
T ss_pred EEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEEEEEEE
Confidence 688888886532 222 2346666666666555555443211 11222222 289999999989886 88888887
Q ss_pred e---cCcEEEEEEEEEECCCCcEEEEEE
Q 032065 117 S---RGKLTSVLVEVKRKGNGELIALGK 141 (148)
Q Consensus 117 ~---gr~~~~~~~~i~~~~~g~lvA~a~ 141 (148)
. .+.+...+++++.+ |+++|+++
T Consensus 131 ~~~~~~~~~~~~~~i~v~--g~~va~a~ 156 (169)
T TIGR01749 131 VINRRLVMGIADGEVLVD--GRLIYTAS 156 (169)
T ss_pred EeecCCcEEEEEEEEEEC--CEEEEEEE
Confidence 5 45689999999964 89999965
No 80
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=96.05 E-value=0.37 Score=35.14 Aligned_cols=94 Identities=11% Similarity=-0.096 Sum_probs=63.4
Q ss_pred EEEEEEEccCCC---CCCC---CcchHHHHHHHHHHHhHHHHHhccC-CceE-EEEEEeeeeecccCCCE-EEEEEEEEe
Q 032065 46 FLRCYFVIPIHA---ADQD---GNWHAGAIATLIDGLGALTVNSFTG-KSKA-SVDLTISLYYSAKIQEE-VEIEAKVVG 116 (148)
Q Consensus 46 ~~~~~~~v~~~~---~n~~---G~lHGG~la~l~D~~~~~a~~~~~~-~~~v-T~~l~i~fl~p~~~g~~-l~~~a~v~~ 116 (148)
.++.+..++++. .+++ ..+=|=++...+=.+++..+..... .... ...-+.+|.+++..++. +.++.++.+
T Consensus 54 ~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~ 133 (172)
T PRK05174 54 YIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKR 133 (172)
T ss_pred EEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEEEEEE
Confidence 688888886542 2222 3466666666665655554432121 1222 22337999999988988 899998888
Q ss_pred e---cCcEEEEEEEEEECCCCcEEEEEE
Q 032065 117 S---RGKLTSVLVEVKRKGNGELIALGK 141 (148)
Q Consensus 117 ~---gr~~~~~~~~i~~~~~g~lvA~a~ 141 (148)
. .+.+...+++++.+ |+++|+++
T Consensus 134 ~~~~~~~~~~~~~~i~v~--g~~va~a~ 159 (172)
T PRK05174 134 VINRKLVMGIADGRVLVD--GEEIYTAK 159 (172)
T ss_pred EecCCCCEEEEEEEEEEC--CEEEEEEE
Confidence 6 46789999999964 99999995
No 81
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=96.02 E-value=0.053 Score=47.45 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=54.0
Q ss_pred cchHHHHHHHHHHHhHHHHHhccCCceEEEE---EEeeeeecccCCCEEEEEEEEEeec------CcEEEEEEEEEECCC
Q 032065 63 NWHAGAIATLIDGLGALTVNSFTGKSKASVD---LTISLYYSAKIQEEVEIEAKVVGSR------GKLTSVLVEVKRKGN 133 (148)
Q Consensus 63 ~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~---l~i~fl~p~~~g~~l~~~a~v~~~g------r~~~~~~~~i~~~~~ 133 (148)
.+||-..++++-.... ....+ .+-.+ -+++|++|+..||+|.++.+|.... +.++.+++++++ ++
T Consensus 587 ia~G~l~~sl~~~l~~---~~~~~--~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~ 660 (675)
T PRK11563 587 VAHGYFVLSAAAGLFV---DPAPG--PVLANYGLENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTN-QD 660 (675)
T ss_pred eeCHHHHHHHHHHHhh---ccCcc--chhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEE-CC
Confidence 6788877777654321 11111 11111 2799999999999999999998652 147888999996 58
Q ss_pred CcEEEEEEEEEE
Q 032065 134 GELIALGKNWMT 145 (148)
Q Consensus 134 g~lvA~a~~t~~ 145 (148)
|+++.+++.++.
T Consensus 661 G~~V~~~~~~~l 672 (675)
T PRK11563 661 GELVATYDILTL 672 (675)
T ss_pred CCEEEEEEEHHh
Confidence 999999987654
No 82
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=95.49 E-value=0.079 Score=41.61 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=61.2
Q ss_pred CcchHHHHHHHHHHHhHH-HHHhcc------CCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCC
Q 032065 62 GNWHAGAIATLIDGLGAL-TVNSFT------GKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNG 134 (148)
Q Consensus 62 G~lHGG~la~l~D~~~~~-a~~~~~------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g 134 (148)
=.+|--.++.+-|...-. +...++ +-..+++|=++.|+||.+.+++|....+.-........+++++++ .+|
T Consensus 192 ~~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf~-r~G 270 (289)
T COG1946 192 PRLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVRGQLFD-RDG 270 (289)
T ss_pred HHHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceeeeEEEc-CCC
Confidence 356777777777765322 223333 124567777999999999999999999999888888999999995 699
Q ss_pred cEEEEEEE
Q 032065 135 ELIALGKN 142 (148)
Q Consensus 135 ~lvA~a~~ 142 (148)
+++|...-
T Consensus 271 ~LiA~~~Q 278 (289)
T COG1946 271 QLIASVVQ 278 (289)
T ss_pred CEEEEEee
Confidence 99998753
No 83
>PLN02864 enoyl-CoA hydratase
Probab=94.76 E-value=0.23 Score=39.51 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=43.5
Q ss_pred eEEEEEEeeeeecccCCCEEEEEEEEEee---cC-cEEEEEEEEEECCCCcEEEEEEEEEEe
Q 032065 89 KASVDLTISLYYSAKIQEEVEIEAKVVGS---RG-KLTSVLVEVKRKGNGELIALGKNWMTS 146 (148)
Q Consensus 89 ~vT~~l~i~fl~p~~~g~~l~~~a~v~~~---gr-~~~~~~~~i~~~~~g~lvA~a~~t~~~ 146 (148)
.|=.+-.+.|+||++.++.+.++++|... |+ .+..++.+++++.+|+++++.+.|+-.
T Consensus 94 lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~ 155 (310)
T PLN02864 94 LLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFL 155 (310)
T ss_pred eeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEE
Confidence 34445578999999999999999999644 33 234667777755689999998887643
No 84
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=93.56 E-value=0.4 Score=37.70 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=62.1
Q ss_pred CCcchHHHHHHHHHHHhHHHHH-hcc--CC--ceEEEEEEeeeeec-ccCCCEEEEEEEEEeecCcEEEEEEEEEECCCC
Q 032065 61 DGNWHAGAIATLIDGLGALTVN-SFT--GK--SKASVDLTISLYYS-AKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNG 134 (148)
Q Consensus 61 ~G~lHGG~la~l~D~~~~~a~~-~~~--~~--~~vT~~l~i~fl~p-~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g 134 (148)
--.+|--+++.+-|...-.++. ... +. ..++.+=++.|+++ ++.+++|.-++.....+...+++++++++ .||
T Consensus 207 D~r~h~~~vaylSD~~ll~Ta~~~h~~~g~~s~~~SLdHsiwfH~~e~~iddwilye~~s~~a~~sr~~i~Grlw~-rdG 285 (294)
T KOG3016|consen 207 DERLHRWVVAYLSDLILLTTALNPHNREGMSSMALSLDHSIWFHRPEVRADDWLLYECVSPIATGSRGFIEGKLWN-RDG 285 (294)
T ss_pred hhhhceehHhhhhhHHHHHhcccchhhccceeeecccceeEEEecccccccceEEEEEEeccccCcceeEeeeEEc-cCC
Confidence 5567888888888987655443 322 21 23355558999998 79999999999999999999999999996 689
Q ss_pred cEEEEE
Q 032065 135 ELIALG 140 (148)
Q Consensus 135 ~lvA~a 140 (148)
++++..
T Consensus 286 ~l~~s~ 291 (294)
T KOG3016|consen 286 RLICST 291 (294)
T ss_pred cEEEEe
Confidence 999875
No 85
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=92.39 E-value=4 Score=31.28 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=72.9
Q ss_pred HHHHHHhhC-C-CCCcccceeeecccEEEEeeCCEEEEEEEccCCCCC--CCCcchHHHHHHHHHHHhHHH---HHhcc-
Q 032065 14 IKMLERTSK-G-VECSELEAITFQGIQAVELRTGFLRCYFVIPIHAAD--QDGNWHAGAIATLIDGLGALT---VNSFT- 85 (148)
Q Consensus 14 ~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~g~~~~~~~v~~~~~n--~~G~lHGG~la~l~D~~~~~a---~~~~~- 85 (148)
.+|.+.+.+ + ++++.|.. ++-... +.+..++.+.+.... ..-.+|.+ ++|.+.-.. +....
T Consensus 156 ~~~Y~~~~~~gl~~g~~fr~-----i~~i~~--~~~~~~~~~~~~~~~~~~~~~l~P~----llD~~lq~~~~~~~~~~~ 224 (295)
T PF14765_consen 156 EEFYERLAERGLFYGPRFRG-----IESIRR--GEALAEVRLPDDPASDPDPFVLHPA----LLDAALQAAGLALWEDDD 224 (295)
T ss_dssp HHHHHHHHHTTEEEHGGGHH-----EEEEEE--SEEEEEEECGTTTGGGGGGSSS-HH----HHHHHHHGHGCCHTSTTT
T ss_pred HHHHHhHHhcCCccCCcccc-----hhhhhh--ccceEEEEEEeeccCCCCceeECHH----HHHHHHHHHHHHhccccC
Confidence 456666632 2 23555544 343333 677788888654432 12445664 556665422 11111
Q ss_pred -CCceEEEEE-Eeeeee-cccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEE
Q 032065 86 -GKSKASVDL-TISLYY-SAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWM 144 (148)
Q Consensus 86 -~~~~vT~~l-~i~fl~-p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~ 144 (148)
....+-..+ ++.+.+ |.+.++.+.+.++..+.+......++.+++ ++|++++.-+...
T Consensus 225 ~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~v~d-~~G~~~~~~~gl~ 285 (295)
T PF14765_consen 225 RGRVFLPVSIERIRIFRAPPPPGDRLYVYARLVKSDDDTITGDVTVFD-EDGRVVAELEGLT 285 (295)
T ss_dssp TTSEEEEEEEEEEEESSS--SSTSEEEEEEEEESTTTTEEEEEEEEEE-TTSBEEEEEEEEE
T ss_pred CCCEEcccEeCEEEEEeccCCCCCEEEEEEEEecccceEEEEEEEEEC-CCCCEEEEEccEE
Confidence 223444444 577774 667799999999999999999999999996 6899999887543
No 86
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=91.23 E-value=4.6 Score=31.07 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=63.7
Q ss_pred CCEEEEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeec-CcEE
Q 032065 44 TGFLRCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSR-GKLT 122 (148)
Q Consensus 44 ~g~~~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~g-r~~~ 122 (148)
+......+++....+..+|-+.--....|+-++.-..... ...-.++.|+|.+.+..|+.|.+...+.... ....
T Consensus 163 ~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~~----~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~~ 238 (261)
T PF01643_consen 163 EPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFLE----KYQIKSIDINYKKEIRYGDTITSYTEVEKDEEEDGL 238 (261)
T ss_dssp TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHHC----CEEEEEEEEEE-S--BTT-EEEEEEEEEEECCTTEE
T ss_pred hhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhhc----cCCcEEEEEEEccccCCCCEEEEEEEEcccccCCce
Confidence 3345677788777888888888888888876665443322 2346688999999999999999999876544 3555
Q ss_pred EEEEEEEECCCCcEEEEEEEEE
Q 032065 123 SVLVEVKRKGNGELIALGKNWM 144 (148)
Q Consensus 123 ~~~~~i~~~~~g~lvA~a~~t~ 144 (148)
.+.-.|.++ +|+.+|.++...
T Consensus 239 ~~~h~i~~~-~g~~~~~~~~~W 259 (261)
T PF01643_consen 239 STLHEIRNE-DGEEVARARTEW 259 (261)
T ss_dssp EEEEEEECT--TCEEEEEEEEE
T ss_pred EEEEEEEcC-CCceEEEEEEEE
Confidence 677778854 499999998754
No 87
>PLN02370 acyl-ACP thioesterase
Probab=82.74 E-value=26 Score=29.22 Aligned_cols=95 Identities=11% Similarity=-0.024 Sum_probs=61.5
Q ss_pred EEEEEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEE-----eecCcE-
Q 032065 48 RCYFVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVV-----GSRGKL- 121 (148)
Q Consensus 48 ~~~~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~-----~~gr~~- 121 (148)
...+++.-..+..+|-+.-.....|+=++.-.-... .....+++++|.+.+..|+.|.....+. ..+..-
T Consensus 303 ~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l~----~~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~~~ 378 (419)
T PLN02370 303 RKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIME----SHELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTAGD 378 (419)
T ss_pred eeeeeecHHHCcccCccccHHHHHHHHhhCchhhhh----cceEEEEEEEEcccCCCCCEEEEEEeecccccccccCCCc
Confidence 344677666777777777777777765554433322 2345678999999999999999876643 111111
Q ss_pred EEEEEEEEECCCCcEEEEEEEEEEec
Q 032065 122 TSVLVEVKRKGNGELIALGKNWMTSK 147 (148)
Q Consensus 122 ~~~~~~i~~~~~g~lvA~a~~t~~~~ 147 (148)
..+...+. .++|+.+|.++....-|
T Consensus 379 ~~~~h~~~-~~dG~e~a~a~t~Wr~~ 403 (419)
T PLN02370 379 VECQHLLR-LEDGAEIVRGRTEWRPK 403 (419)
T ss_pred ceEEEEEE-cCCCeEEEEEEEEEEEC
Confidence 12333333 56899999999887655
No 88
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=75.48 E-value=14 Score=26.02 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=37.1
Q ss_pred CCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 104 IQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 104 ~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
.|-.+.+.++|.|...-+..+.+.+.+-++|+++...+..+-
T Consensus 79 ~GAd~~lvG~VqKvS~Lil~~~~~v~Dv~tg~~v~~~~~diR 120 (140)
T PF11684_consen 79 LGADYVLVGEVQKVSNLILNMNVYVRDVETGKVVRGRSVDIR 120 (140)
T ss_pred cCCCEEEEEEEechhhhheeeeEEEEECCCCCEEeeeeeeEe
Confidence 477888999999999999999999998889999999888764
No 89
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=73.26 E-value=23 Score=27.31 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=43.9
Q ss_pred EEccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcE
Q 032065 51 FVIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKL 121 (148)
Q Consensus 51 ~~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~ 121 (148)
|++.-.....+|-+.....-.++-+..+.-.....++ ..+++.|.+|+..|++|.+..++-..+.+-
T Consensus 157 f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~p----~r~~l~y~keva~G~~iti~~e~~~~~s~~ 223 (250)
T COG3884 157 FPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYGP----LRLTLEYVKEVAPGEKITIVYEVHPLESKH 223 (250)
T ss_pred ceeEEEeeccccccccceehHHHHHHHhhhhHhhccc----ceeEEEEEcccCCCCeEEEEEEEcccCcee
Confidence 3333333344444445555566666666555443322 457899999999999999999998877763
No 90
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=73.26 E-value=40 Score=25.98 Aligned_cols=55 Identities=9% Similarity=-0.025 Sum_probs=45.2
Q ss_pred ceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEE
Q 032065 88 SKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWM 144 (148)
Q Consensus 88 ~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~ 144 (148)
.-+.....+++.||...++.+.++.++....+..|..+.++.+ .|..+....+++
T Consensus 55 ~WiV~~~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~~--~gg~Lie~~a~w 109 (250)
T COG3884 55 LWIVRRTEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLDG--RGGGLIEIEAFW 109 (250)
T ss_pred eEEEEEEEEEEeeccccCCcceEEEeeccccceEEEEEEEEec--CCCcEEEEEEEE
Confidence 3456778899999999999999999999999999999999996 355444555443
No 91
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=60.60 E-value=41 Score=26.21 Aligned_cols=83 Identities=18% Similarity=0.150 Sum_probs=56.7
Q ss_pred EEccCCCCCCCC-cchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEE
Q 032065 51 FVIPIHAADQDG-NWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVK 129 (148)
Q Consensus 51 ~~v~~~~~n~~G-~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~ 129 (148)
.+......|..| ++||-.+++++=.++- ...+++ ...+..+-|+|+-.++++.+.++....|+--.+ .+
T Consensus 190 ~~Yat~vEgYpgLVvhGPl~atlll~~~~----~~~pq~--~~Rf~fR~L~p~f~~~~lti~~~l~~~g~~~~w---~~- 259 (273)
T COG3777 190 APYATYVEGYPGLVVHGPLIATLLLRAFQ----PFLPQP--IRRFRFRNLSPAFPNETLTICGSLSGSGGAELW---TI- 259 (273)
T ss_pred CcceeeccCCCCceecchHHHHHHHHHhh----hhcccc--chheeccccccccCCCCeeEeeEecCCCceEEE---Ee-
Confidence 344444556665 6899999999876533 222332 455677889999999999999999988865322 22
Q ss_pred ECCCCcEEEEEEEEE
Q 032065 130 RKGNGELIALGKNWM 144 (148)
Q Consensus 130 ~~~~g~lvA~a~~t~ 144 (148)
..++.++.+|+..|
T Consensus 260 -~~~~pv~mrarV~~ 273 (273)
T COG3777 260 -RGDGPVAMRARVFF 273 (273)
T ss_pred -cCCcchhheeeecC
Confidence 23577888887653
No 92
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=57.64 E-value=40 Score=20.35 Aligned_cols=40 Identities=13% Similarity=-0.014 Sum_probs=27.8
Q ss_pred CCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 032065 105 QEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWMT 145 (148)
Q Consensus 105 g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 145 (148)
|..-...+...-.-....-.++++. +++|++++...++++
T Consensus 27 g~r~Rt~S~k~~~~~~~G~WrV~V~-~~~G~~l~~~~F~Vt 66 (66)
T PF11141_consen 27 GGRWRTWSSKQNFPDQPGDWRVEVV-DEDGQVLGSLRFSVT 66 (66)
T ss_pred CCCEEEEEEeecCCCCCcCEEEEEE-cCCCCEEEEEEEEEC
Confidence 3344444544444446677899999 568999999988764
No 93
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=57.29 E-value=41 Score=34.58 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=40.2
Q ss_pred EeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEE
Q 032065 95 TISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGK 141 (148)
Q Consensus 95 ~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~ 141 (148)
++...+|.+.++...+..+|.+...+.+.+++.++ +.+|++++.-.
T Consensus 2522 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~-~~~g~~~~~~~ 2567 (2582)
T TIGR02813 2522 EFVSYRPVSLGEKFYLKLDVVKSSGRSLVANIELY-HQDGRLSSEMK 2567 (2582)
T ss_pred eEEEecCCCCCCceEEEEEEEeccCCeEEEEEEEE-CCCCcEEEEEe
Confidence 56777888889999999999999999999999999 56899987753
No 94
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=53.85 E-value=96 Score=23.53 Aligned_cols=108 Identities=11% Similarity=0.052 Sum_probs=59.9
Q ss_pred ccEEEEeeCCEEEEEEEccCC---CCCCCCcchHHHH---HHHHHHHhHHHHHhccCCceEEEEEEeeeeecccC--CCE
Q 032065 36 GIQAVELRTGFLRCYFVIPIH---AADQDGNWHAGAI---ATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKI--QEE 107 (148)
Q Consensus 36 g~~~~~~~~g~~~~~~~v~~~---~~n~~G~lHGG~l---a~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~--g~~ 107 (148)
|-+....+++..+++..+... +...+ .++|-.+ +++++.+...+...... ..+.++ ++.|.+|+.+ ++.
T Consensus 5 g~~~~~~~~~~~~~~~~l~~~~~~~l~dH-~v~g~~i~Pga~~le~~~~Aa~~~~~~-~~~~l~-~~~~~~pl~l~~~~~ 81 (295)
T PF14765_consen 5 GHRVPSSSPGSVVFESRLSPDEHPFLRDH-RVQGQPILPGAAYLEMALEAARQLSPS-SVVELR-DLRFHRPLVLDEGEP 81 (295)
T ss_dssp BEEEEETTTSEEEEEEEECTTTTGGGGGE-EETTEEEE-HHHHHHHHHHHHHHHTCS-SEEEEE-EEEE-S-EEE-TTTE
T ss_pred CcccccCCCCeEEEEEEECCccCchhhcC-EECCEeeehhHHHHHHHHHHHHHhhCc-ccceEE-EeEecccEEecCCCc
Confidence 556666667777777776421 22221 2222211 34445544433333322 355555 8999999954 578
Q ss_pred EEEEEEEEee-cCc-EEEEEEEEEEC--CCC--cEEEEEEEEEEe
Q 032065 108 VEIEAKVVGS-RGK-LTSVLVEVKRK--GNG--ELIALGKNWMTS 146 (148)
Q Consensus 108 l~~~a~v~~~-gr~-~~~~~~~i~~~--~~g--~lvA~a~~t~~~ 146 (148)
..+..++... ++. ...++++++.. .++ .+.++|+..+..
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~h~~g~v~~~~ 126 (295)
T PF14765_consen 82 RELRVELDPEEDGSGSMEWRFEIFSRNKDDSGWTLHASGQVSLDK 126 (295)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEESTCCGEEEEEEEEEEEES
T ss_pred EEEEEEEEEccCCCCccceEEEEEEecCCCcceEEeeeeEEEeee
Confidence 8888888888 343 35666777643 222 677777776543
No 95
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=50.58 E-value=65 Score=20.64 Aligned_cols=45 Identities=24% Similarity=0.246 Sum_probs=25.7
Q ss_pred EeeeeecccCCCE----EEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEEEEE
Q 032065 95 TISLYYSAKIQEE----VEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGKNWM 144 (148)
Q Consensus 95 ~i~fl~p~~~g~~----l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~ 144 (148)
+|.-..|.+ |+. +.+.++-.- --+.+..+|. |.+|++++++..+.
T Consensus 2 ~I~V~~P~p-g~~V~sp~~V~G~A~~---FEgtv~~rv~-D~~g~vl~e~~~~a 50 (88)
T PF10648_consen 2 NIWVTAPAP-GDTVSSPVKVSGKARV---FEGTVNIRVR-DGHGEVLAEGFVTA 50 (88)
T ss_pred ceEEcCCCC-cCCcCCCEEEEEEEEE---eeeEEEEEEE-cCCCcEEEEeeEEe
Confidence 345566776 444 444444222 1234567777 66899997776554
No 96
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=46.15 E-value=94 Score=21.19 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=25.9
Q ss_pred EEEEeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCcE
Q 032065 92 VDLTISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGEL 136 (148)
Q Consensus 92 ~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~l 136 (148)
+++.++=|.| ++.+.++++.....+..-...+....|++|.+
T Consensus 5 ~~I~v~GL~p---~~~vtl~a~~~~~~g~~w~S~A~f~Ad~~G~V 46 (126)
T PF04775_consen 5 VDIRVSGLPP---GQEVTLRARLTDDNGVQWQSYATFRADENGIV 46 (126)
T ss_dssp -EEEEES--T---T-EEEEEEEEE-TTS-EEEEEEEEE--TTS-E
T ss_pred eEEEEeCCCC---CCEEEEEEEEEeCCCCEEEEEEEEEcCCCCeE
Confidence 3456666666 67999999999877777777888887878865
No 97
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=38.45 E-value=20 Score=27.75 Aligned_cols=55 Identities=4% Similarity=-0.129 Sum_probs=35.9
Q ss_pred CcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeecccCCCEEEEEEEEEeecCcEEE
Q 032065 62 GNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAKIQEEVEIEAKVVGSRGKLTS 123 (148)
Q Consensus 62 G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~ 123 (148)
-.+||=+..++.--+.+ ... .+.+-.+++++|-.|+-.|++|....| +.|.|..+
T Consensus 192 pilHGlc~lg~~~riv~----a~~-~~a~y~~~kvrF~spV~pGdtll~~~w--K~g~r~~f 246 (272)
T KOG1206|consen 192 PILHGLCTLGFSARIVG----AQF-PPAVYKAQKVRFSSPVGPGDTLLVLVW--KQGLRITF 246 (272)
T ss_pred chhhhHHHhhhhHHHHH----Hhc-CchhhheeeeeecCCCCCchhHHHHHH--hhhceeEE
Confidence 46899877776544433 222 245677889999999988998865543 44554433
No 98
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=36.09 E-value=75 Score=19.91 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.0
Q ss_pred ceEEEEEEeeeeecccCCCEEEEEE
Q 032065 88 SKASVDLTISLYYSAKIQEEVEIEA 112 (148)
Q Consensus 88 ~~vT~~l~i~fl~p~~~g~~l~~~a 112 (148)
.+++...++.++.+++.|+.+.+.+
T Consensus 22 ~G~~~~v~l~lv~~~~vGD~VLVH~ 46 (76)
T TIGR00074 22 CGIKRDVSLDLVGEVKVGDYVLVHV 46 (76)
T ss_pred CCeEEEEEEEeeCCCCCCCEEEEec
Confidence 4577888999998899999998775
No 99
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=34.90 E-value=1e+02 Score=18.47 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.6
Q ss_pred CcEEEEEEEEEECCCCcEEEEEEE
Q 032065 119 GKLTSVLVEVKRKGNGELIALGKN 142 (148)
Q Consensus 119 r~~~~~~~~i~~~~~g~lvA~a~~ 142 (148)
.+...+.+.+.++.+|+|.|....
T Consensus 30 ~~~~~vtV~V~~~~~G~L~A~v~y 53 (64)
T TIGR03786 30 TTVHTVTVTVTDDEQGKLVATVIY 53 (64)
T ss_pred CCEEEEEEEEEECCCCcEEEEEEE
Confidence 456677888887778999876643
No 100
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=33.98 E-value=1.2e+02 Score=19.05 Aligned_cols=42 Identities=19% Similarity=0.103 Sum_probs=28.5
Q ss_pred ecc-cCCCEEEEEEEEEeecCc-----EEEEEEEEEECCCCcEEEEEEE
Q 032065 100 YSA-KIQEEVEIEAKVVGSRGK-----LTSVLVEVKRKGNGELIALGKN 142 (148)
Q Consensus 100 ~p~-~~g~~l~~~a~v~~~gr~-----~~~~~~~i~~~~~g~lvA~a~~ 142 (148)
||+ +.|++|.+++.+.....+ -.-+.++|.+ .+|+.+.+-..
T Consensus 8 r~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~d-p~g~~v~~~~~ 55 (99)
T PF01835_consen 8 RPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKD-PSGNEVFRWSV 55 (99)
T ss_dssp SSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEE-TTSEEEEEEEE
T ss_pred ccCcCCCCEEEEEEEEeccccccccccCCceEEEEEC-CCCCEEEEEEe
Confidence 444 458899999888777621 2466788885 47888877655
No 101
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=33.58 E-value=59 Score=20.56 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=8.6
Q ss_pred cCcEEEEEEEEEECCCCcEEEE
Q 032065 118 RGKLTSVLVEVKRKGNGELIAL 139 (148)
Q Consensus 118 gr~~~~~~~~i~~~~~g~lvA~ 139 (148)
|....++++++. |++|.++.-
T Consensus 16 g~d~~~i~v~v~-D~~Gnpv~~ 36 (92)
T smart00634 16 GSDAITLTATVT-DANGNPVAG 36 (92)
T ss_pred CcccEEEEEEEE-CCCCCCcCC
Confidence 334444444444 233444333
No 102
>PF06421 LepA_C: GTP-binding protein LepA C-terminus; InterPro: IPR013842 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family is unknown. This entry represents the C-terminal region of these proteins [].; PDB: 2YWF_A 2YWE_A 2YWG_A 2YWH_A 3CB4_F 3DEG_C.
Probab=30.37 E-value=1.4e+02 Score=20.07 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=30.8
Q ss_pred CchHHHHHHHHHHHhhCCCCCcccceeeecccEEEEeeCCEEEEEEEccCCCCCCCCcchHHHH
Q 032065 6 DDDALQASIKMLERTSKGVECSELEAITFQGIQAVELRTGFLRCYFVIPIHAADQDGNWHAGAI 69 (148)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~v~~~~~n~~G~lHGG~l 69 (148)
.+.+.+.+++|.+.+.+--|.+.|+- .+...=.+.+..+-++.+.--|-..-+|||=+
T Consensus 15 r~~a~~~gr~~v~kLK~~IPRq~fev------~IQA~ig~kiIARetI~a~RKdV~akcyGGDi 72 (108)
T PF06421_consen 15 RSKAQRRGREIVEKLKELIPRQQFEV------PIQAAIGGKIIARETIKALRKDVTAKCYGGDI 72 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHS-S-SS-E------EEEEEETTEEEEEEEE----TT----------
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHhhh------hhhHHhCCeeEEecccHHHHHHHHHHhhCCCH
Confidence 34557889999999976666666753 45556677889999998877787788888844
No 103
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=29.26 E-value=1.2e+02 Score=19.73 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=21.2
Q ss_pred eecccCCCEEEEEEEEEeec--CcEEEEEEEEEECCCCc
Q 032065 99 YYSAKIQEEVEIEAKVVGSR--GKLTSVLVEVKRKGNGE 135 (148)
Q Consensus 99 l~p~~~g~~l~~~a~v~~~g--r~~~~~~~~i~~~~~g~ 135 (148)
+++...|+.+.+.+||.+.- ++++|++ ++ |.+|.
T Consensus 6 l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~--Lr-D~~g~ 41 (108)
T cd04316 6 ITPELDGEEVTVAGWVHEIRDLGGIKFVI--LR-DREGI 41 (108)
T ss_pred CchhhCCCEEEEEEEEEeeeccCCeEEEE--Ee-cCCee
Confidence 44455688999999996543 3455554 34 44554
No 104
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=29.11 E-value=95 Score=20.12 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=26.7
Q ss_pred CEEEEEEEEEeecCcEEEEEEEEEECCCCcEEEEEE
Q 032065 106 EEVEIEAKVVGSRGKLTSVLVEVKRKGNGELIALGK 141 (148)
Q Consensus 106 ~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~ 141 (148)
+.+.+.+.=++.|+-+.-+++++++..+|+++++++
T Consensus 13 ~~~~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~ 48 (97)
T PF11974_consen 13 DGLLVWVTSLSTGKPVAGAEVELYDSRNGQVLASGK 48 (97)
T ss_pred CCEEEEEeeCCCCCccCCCEEEEEECCCCcEeeeee
Confidence 455666666777888888888888524788888876
No 105
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=28.63 E-value=35 Score=20.81 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=13.9
Q ss_pred EEEECCCCcEEEEEEEEEEec
Q 032065 127 EVKRKGNGELIALGKNWMTSK 147 (148)
Q Consensus 127 ~i~~~~~g~lvA~a~~t~~~~ 147 (148)
.+++ .+|+.+|.|...++|+
T Consensus 38 ~i~~-~~g~~ia~G~a~~ss~ 57 (74)
T PF01472_consen 38 AIVD-EDGEVIAVGRANMSSE 57 (74)
T ss_dssp EEEE-TTSSEEEEEEESSTHH
T ss_pred EEEc-CCCeEEEEEEEecCHH
Confidence 4453 3588999988887763
No 106
>COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase [Lipid metabolism]
Probab=28.04 E-value=1.4e+02 Score=21.33 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=57.8
Q ss_pred EEEEeeCCEEEEEEEccCC---CCCCCCcchHHHHHHHHHHHhHHHHH--hc-cCCc----eEEEEE-Eeeeee-cccCC
Q 032065 38 QAVELRTGFLRCYFVIPIH---AADQDGNWHAGAIATLIDGLGALTVN--SF-TGKS----KASVDL-TISLYY-SAKIQ 105 (148)
Q Consensus 38 ~~~~~~~g~~~~~~~v~~~---~~n~~G~lHGG~la~l~D~~~~~a~~--~~-~~~~----~vT~~l-~i~fl~-p~~~g 105 (148)
+++.++++.++++.++.|. .+.+.|.+-+=+--.++-.+.+...- .. .+++ ++-..- ++.-.. ..+.+
T Consensus 27 ~VvtwdDd~~rc~atvsp~~a~~l~~dg~Lpa~~gIElmAQAv~vh~g~l~~rq~~ps~r~GfLlg~Rkleaha~~l~~~ 106 (161)
T COG4706 27 DVVTWDDDSARCRATVSPSGAPFLDPDGNLPAWFGIELMAQAVGVHSGWLRHRQGKPSIRLGFLLGARKLEAHAGILPAG 106 (161)
T ss_pred eeeeecCCeEEEEeEeCCCCCCccCcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCcccceeeeeeeeeeeeccccCCc
Confidence 5778899999999999664 67777888877777777776554432 11 1222 221111 122122 22445
Q ss_pred CEEEEE-EEEEeecCcEEEEEEEEEECCCCcEEE
Q 032065 106 EEVEIE-AKVVGSRGKLTSVLVEVKRKGNGELIA 138 (148)
Q Consensus 106 ~~l~~~-a~v~~~gr~~~~~~~~i~~~~~g~lvA 138 (148)
+.+.+. ..+++--+.....+|+|+++ |+..+
T Consensus 107 q~ll~t~~e~iqddgg~g~f~csir~d--~~~~~ 138 (161)
T COG4706 107 QTLLITVKELIQDDGGFGSFECSIRND--GEATG 138 (161)
T ss_pred cchHHHHHHHhccCCCceEEEEEEccC--chhhc
Confidence 555444 34455555677889999843 55444
No 107
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=27.64 E-value=1.6e+02 Score=18.82 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=24.9
Q ss_pred EeeeeecccCCCEEEEEEEEEeecCcEEEEEEEEEECCCCc
Q 032065 95 TISLYYSAKIQEEVEIEAKVVGSRGKLTSVLVEVKRKGNGE 135 (148)
Q Consensus 95 ~i~fl~p~~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~ 135 (148)
.++|-.=-..|-...+.+++.+.|.. ..++.++++-.+|+
T Consensus 64 ~~~~~~w~~~gad~lv~G~v~~~g~~-~~v~~~L~Dv~~~~ 103 (105)
T PF04052_consen 64 QVNFSDWRSLGADYLVTGSVTQSGNG-LRVEFRLYDVASGK 103 (105)
T ss_dssp G--HHHHHTTT-SEEEEEEEEE-TTS-EEEEEEEEE-----
T ss_pred CcCHHHHHHcCCCEEEEEEEEECCCE-EEEEEEEEeccccc
Confidence 44554333468899999999999988 89999999654444
No 108
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=26.49 E-value=1.9e+02 Score=23.20 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=34.3
Q ss_pred CCCCchHHHHHHHHHHHhhC-CCCCcccceeeecccEEEE-eeCCEEEEEEEcc-CCCCCCCCcchHHHHHHHHHHH
Q 032065 3 MKEDDDALQASIKMLERTSK-GVECSELEAITFQGIQAVE-LRTGFLRCYFVIP-IHAADQDGNWHAGAIATLIDGL 76 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~-~~~g~~~~~~~v~-~~~~n~~G~lHGG~la~l~D~~ 76 (148)
||.|+..-+..++|+++-.- |....... +.-++.-+.- ..+|.+-+.+.-. .-...|.| |||+..+|.+.-
T Consensus 60 IMTS~~Th~~T~~~fe~n~yFGl~~~~V~-fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~G--hGdiy~aL~~sG 133 (315)
T cd06424 60 IMTSDDTHSKTLKLLEENNYFGLEKDQVH-ILKQEKVFCLIDNDAHLALDPDNTYSILTKPHG--HGDVHTLLYNSG 133 (315)
T ss_pred EECCCchhHHHHHHHHHCCccCCCcccEE-EEecCceEEEecCCCCcccccCCCCccccCCCC--chHHHHHHHHCC
Confidence 57888888889999986310 11111110 0011221221 1334331111111 12345666 999999987663
No 109
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=25.44 E-value=1.2e+02 Score=20.33 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=16.9
Q ss_pred cEEEEEEEEEECCCCcEEEEEEE
Q 032065 120 KLTSVLVEVKRKGNGELIALGKN 142 (148)
Q Consensus 120 ~~~~~~~~i~~~~~g~lvA~a~~ 142 (148)
+.-.+.+++.++.+|+.+|.++.
T Consensus 23 SnkhiyaQvidd~~g~tlasaST 45 (109)
T CHL00139 23 SNKHIYAQIIDDTNGKTLVACST 45 (109)
T ss_pred eCCeEEEEEEECCCCCEEEEEec
Confidence 33356788887778899988864
No 110
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=24.70 E-value=1.4e+02 Score=20.25 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=23.0
Q ss_pred eeeeecccCCCEEEEEEEEEeecC--cEEEEEEEEEECCCCcE
Q 032065 96 ISLYYSAKIQEEVEIEAKVVGSRG--KLTSVLVEVKRKGNGEL 136 (148)
Q Consensus 96 i~fl~p~~~g~~l~~~a~v~~~gr--~~~~~~~~i~~~~~g~l 136 (148)
+.-+.+...|+.|.+.+||.+.-. +++|++. . |.+|.+
T Consensus 5 ~~~~~~~~~g~~V~i~Gwv~~~R~~gk~~Fi~L--r-D~~g~~ 44 (135)
T cd04317 5 CGELRESHVGQEVTLCGWVQRRRDHGGLIFIDL--R-DRYGIV 44 (135)
T ss_pred hhhCChhHCCCEEEEEEeEehhcccCCEEEEEE--e-cCCeeE
Confidence 444455556889999999965432 3566554 4 444543
No 111
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=24.33 E-value=1.6e+02 Score=17.12 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=17.8
Q ss_pred EEEEEEeecCcEEEEEEEEEECCCCcEE
Q 032065 110 IEAKVVGSRGKLTSVLVEVKRKGNGELI 137 (148)
Q Consensus 110 ~~a~v~~~gr~~~~~~~~i~~~~~g~lv 137 (148)
++.+-.+.||.-+++++++.+-.+|..+
T Consensus 21 ~~~~~~k~gkg~a~v~~klknl~tG~~~ 48 (58)
T PF08207_consen 21 LDFQHVKPGKGGAFVRVKLKNLRTGSKV 48 (58)
T ss_dssp EEEEEECCTTSSSEEEEEEEETTTTEEE
T ss_pred EEEEEECCCCCCeEEEEEEEECCCCCEE
Confidence 3444555677777777777776566554
No 112
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=23.74 E-value=2.4e+02 Score=19.16 Aligned_cols=46 Identities=11% Similarity=0.072 Sum_probs=33.7
Q ss_pred eEEEEEEeeeeeccc--CCCEEEEEEEEEee-cCcEEEEEEEEEECCCC
Q 032065 89 KASVDLTISLYYSAK--IQEEVEIEAKVVGS-RGKLTSVLVEVKRKGNG 134 (148)
Q Consensus 89 ~vT~~l~i~fl~p~~--~g~~l~~~a~v~~~-gr~~~~~~~~i~~~~~g 134 (148)
...+-++++|++|.+ .|....+-+++.+. ...-.++++++...-+|
T Consensus 50 ~~~l~V~t~~l~~~~~~~gslyq~iGEl~~~~~~~~~~L~ARV~r~VdG 98 (118)
T PF15490_consen 50 QHSLKVDTKLLEPFQARVGSLYQFIGELEHQPQDGGIVLKARVLRCVDG 98 (118)
T ss_pred CcEEEEEeeEccccccCCCCEEEEEEEEEEEcCCCcEEEEEEEEEecCC
Confidence 345556677899886 79999999999888 56666788887753333
No 113
>PRK12426 elongation factor P; Provisional
Probab=23.38 E-value=2.4e+02 Score=20.79 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=13.9
Q ss_pred EEEEEEeecCcEEEEEEEEEECCCCcE
Q 032065 110 IEAKVVGSRGKLTSVLVEVKRKGNGEL 136 (148)
Q Consensus 110 ~~a~v~~~gr~~~~~~~~i~~~~~g~l 136 (148)
++.+-++-||.-+++++++++-.+|+.
T Consensus 23 ~~~~h~kPGkg~A~vr~klknl~tG~~ 49 (185)
T PRK12426 23 VSVSKVTGPKGETFIKVSLQAADSDVV 49 (185)
T ss_pred EEEEEecCCCCceEEEEEEEEcCCCCe
Confidence 344445555555555555555444444
No 114
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=21.91 E-value=75 Score=26.54 Aligned_cols=70 Identities=14% Similarity=0.004 Sum_probs=36.1
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCcccceeeecccEEEEeeCCEEEEEEEc----cCCCCCCCCcchHHHHHHHHHHHh
Q 032065 3 MKEDDDALQASIKMLERTSKGVECSELEAITFQGIQAVELRTGFLRCYFVI----PIHAADQDGNWHAGAIATLIDGLG 77 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~v----~~~~~n~~G~lHGG~la~l~D~~~ 77 (148)
+|.|+..-+..++|+++. .+...+ .. +..++.-+.-..++..-+.-+. .+...+|.| |||+..+|.+.-.
T Consensus 110 iMtS~~T~~~T~~~l~ky-fg~~~~-v~-~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~G--hGdi~~aL~~sG~ 183 (420)
T PF01704_consen 110 IMTSFNTHEDTRKFLEKY-FGLDVD-VF-FFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPG--HGDIYRALYNSGL 183 (420)
T ss_dssp EEEETTTHHHHHHHHHHG-CGSSCC-EE-EEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-T--GGGHHHHHHHTTH
T ss_pred EecCcccHHHHHHHHHHh-cCCCcc-eE-EEeecCcceEeCCCccccccccccccchhhccCCC--CcceehhhhccCh
Confidence 577888889999999993 333222 11 1112333333334433333221 111123444 9999999987643
No 115
>PLN00215 predicted protein; Provisional
Probab=20.99 E-value=43 Score=21.43 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=16.2
Q ss_pred EEEEEeeeeecccCCCEEEEE
Q 032065 91 SVDLTISLYYSAKIQEEVEIE 111 (148)
Q Consensus 91 T~~l~i~fl~p~~~g~~l~~~ 111 (148)
--+|+.+|-+|++++++-..+
T Consensus 16 kndlttrytrpapidepnrgk 36 (110)
T PLN00215 16 KNDLTTRYTRPAPIDEPNRGK 36 (110)
T ss_pred ccccceecccCCCCCCCCCCC
Confidence 457899999999988765443
No 116
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=20.68 E-value=2.1e+02 Score=20.32 Aligned_cols=29 Identities=7% Similarity=0.122 Sum_probs=22.0
Q ss_pred EEEEeecCcEEEEEEEEEE--CCCCcEEEEE
Q 032065 112 AKVVGSRGKLTSVLVEVKR--KGNGELIALG 140 (148)
Q Consensus 112 a~v~~~gr~~~~~~~~i~~--~~~g~lvA~a 140 (148)
-+|.+.||+..+-++.+++ |++|+....|
T Consensus 109 iRiss~Grrf~ie~a~vW~l~D~~g~~~GqA 139 (148)
T PF08670_consen 109 IRISSTGRRFRIERATVWNLIDEDGNYCGQA 139 (148)
T ss_pred EEEcCCCCeEEEeceEEEEEEcCCCCEEEEE
Confidence 4667889999999999986 4567666554
No 117
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=20.49 E-value=53 Score=24.84 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=35.2
Q ss_pred EccCCCCCCCCcchHHHHHHHHHHHhHHHHHhccCCceEEEEEEeeeeeccc
Q 032065 52 VIPIHAADQDGNWHAGAIATLIDGLGALTVNSFTGKSKASVDLTISLYYSAK 103 (148)
Q Consensus 52 ~v~~~~~n~~G~lHGG~la~l~D~~~~~a~~~~~~~~~vT~~l~i~fl~p~~ 103 (148)
..+|...=..|+-|||-+.-.+|.++... ....+++++++++-+.|..
T Consensus 67 ~~~P~lvIE~Gs~~GGSal~fA~~m~s~G----q~~kvl~vdIdi~~~~p~a 114 (237)
T COG3510 67 ELQPSLVIEFGSRHGGSALFFANMMISIG----QPFKVLGVDIDIKPLDPAA 114 (237)
T ss_pred hcCCceeEeeccccCchhhhhhHhHHhcC----CCceEEEEecccCcCChhh
Confidence 34566666689999999999988554332 2346789999998888875
Done!