Query 032066
Match_columns 148
No_of_seqs 130 out of 1526
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 14:41:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 100.0 2.1E-33 7.3E-38 177.6 19.9 141 1-145 26-166 (166)
2 1b7f_A Protein (SXL-lethal pro 100.0 4.3E-33 1.5E-37 176.6 17.6 138 1-143 29-168 (168)
3 1fxl_A Paraneoplastic encephal 100.0 1.5E-32 5.2E-37 173.9 18.1 138 1-143 28-167 (167)
4 1l3k_A Heterogeneous nuclear r 100.0 1.6E-32 5.5E-37 178.0 18.3 145 1-147 39-184 (196)
5 2qfj_A FBP-interacting repress 100.0 2.7E-33 9.2E-38 184.2 14.1 147 1-147 54-206 (216)
6 4f02_A Polyadenylate-binding p 100.0 6.2E-33 2.1E-37 182.4 15.8 141 1-146 41-181 (213)
7 3smz_A Protein raver-1, ribonu 100.0 7E-31 2.4E-35 179.2 18.5 144 1-147 121-265 (284)
8 2cjk_A Nuclear polyadenylated 100.0 1.2E-32 4.1E-37 174.5 9.0 139 1-147 29-167 (167)
9 2yh0_A Splicing factor U2AF 65 100.0 4.9E-31 1.7E-35 171.3 15.9 138 9-147 43-195 (198)
10 2g4b_A Splicing factor U2AF 65 100.0 5.5E-31 1.9E-35 167.6 15.4 126 13-144 47-172 (172)
11 2ghp_A U4/U6 snRNA-associated 100.0 6.8E-31 2.3E-35 179.9 16.0 144 1-146 144-291 (292)
12 3nmr_A Cugbp ELAV-like family 100.0 1.3E-30 4.4E-35 166.2 16.0 139 1-144 29-175 (175)
13 1fje_B Nucleolin RBD12, protei 100.0 5.8E-31 2E-35 168.0 13.5 131 7-146 44-174 (175)
14 2kn4_A Immunoglobulin G-bindin 100.0 1.3E-29 4.5E-34 159.4 15.8 142 4-147 2-151 (158)
15 3pgw_A U1-A; protein-RNA compl 100.0 6.5E-29 2.2E-33 169.3 18.1 135 2-144 40-281 (282)
16 3tyt_A Heterogeneous nuclear r 100.0 4.1E-29 1.4E-33 163.1 15.3 136 1-143 31-204 (205)
17 3smz_A Protein raver-1, ribonu 100.0 3.6E-28 1.2E-32 165.8 18.0 122 14-146 54-175 (284)
18 2adc_A Polypyrimidine tract-bi 100.0 2E-28 6.8E-33 162.5 15.9 136 1-146 61-228 (229)
19 1qm9_A Polypyrimidine tract-bi 100.0 1.1E-28 3.7E-33 160.3 12.5 136 1-146 30-197 (198)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-27 6.2E-32 162.9 16.1 130 1-146 67-197 (292)
21 2i2y_A Fusion protein consists 100.0 1.9E-27 6.4E-32 148.4 12.6 129 13-147 9-149 (150)
22 3sde_A Paraspeckle component 1 100.0 9.1E-27 3.1E-31 157.2 16.7 127 2-146 49-179 (261)
23 4fxv_A ELAV-like protein 1; RN 99.9 3.4E-25 1.1E-29 128.9 12.0 81 65-145 18-98 (99)
24 2lea_A Serine/arginine-rich sp 99.9 5.3E-25 1.8E-29 134.8 7.4 125 17-147 4-128 (135)
25 2lxi_A RNA-binding protein 10; 99.9 1.4E-24 4.7E-29 124.5 7.7 82 66-147 1-84 (91)
26 3s8s_A Histone-lysine N-methyl 99.9 1.2E-23 4.1E-28 124.5 11.9 83 64-146 4-86 (110)
27 1rk8_A CG8781-PA, CG8781-PA pr 99.9 2.2E-23 7.6E-28 131.8 12.5 125 22-146 11-152 (165)
28 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.5E-23 1.2E-27 117.7 11.8 83 64-146 4-86 (87)
29 3md1_A Nuclear and cytoplasmic 99.9 5.1E-23 1.7E-27 116.0 12.2 81 67-147 2-82 (83)
30 2do4_A Squamous cell carcinoma 99.9 9.5E-23 3.3E-27 118.8 13.5 86 61-147 12-97 (100)
31 2jrs_A RNA-binding protein 39; 99.9 6.7E-23 2.3E-27 121.0 12.2 89 60-148 20-108 (108)
32 2cqc_A Arginine/serine-rich sp 99.9 1.6E-22 5.3E-27 116.8 13.5 85 61-145 10-94 (95)
33 2cq0_A Eukaryotic translation 99.9 1.4E-22 4.9E-27 118.7 12.6 86 62-147 11-96 (103)
34 2lkz_A RNA-binding protein 5; 99.9 1.5E-23 5.2E-28 120.7 8.2 82 64-145 7-94 (95)
35 2x1f_A MRNA 3'-END-processing 99.9 7E-23 2.4E-27 118.5 11.1 83 65-147 1-83 (96)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.9 8.2E-23 2.8E-27 115.7 11.0 82 63-144 4-85 (85)
37 2dgo_A Cytotoxic granule-assoc 99.9 3.5E-22 1.2E-26 119.2 14.2 87 61-147 10-96 (115)
38 2dnz_A Probable RNA-binding pr 99.9 7.5E-23 2.6E-27 118.1 10.9 84 64-147 3-86 (95)
39 2cpz_A CUG triplet repeat RNA- 99.9 2.4E-22 8.1E-27 119.9 13.2 86 62-147 21-106 (115)
40 1whw_A Hypothetical protein ri 99.9 1.2E-22 4E-27 118.2 11.5 85 63-147 5-89 (99)
41 1x5u_A Splicing factor 3B subu 99.9 1.2E-22 4.2E-27 119.3 11.3 87 61-147 10-96 (105)
42 2la6_A RNA-binding protein FUS 99.9 2.2E-22 7.4E-27 117.1 11.9 85 60-144 7-99 (99)
43 1x5t_A Splicing factor 3B subu 99.9 9E-23 3.1E-27 118.0 10.1 84 64-147 3-87 (96)
44 1p27_B RNA-binding protein 8A; 99.9 1.9E-22 6.4E-27 118.7 11.7 86 62-147 19-104 (106)
45 2cqp_A RNA-binding protein 12; 99.9 1.8E-22 6.3E-27 117.1 11.4 87 62-148 11-97 (98)
46 2dng_A Eukaryotic translation 99.9 5.3E-22 1.8E-26 116.2 13.2 87 59-147 8-94 (103)
47 2dgs_A DAZ-associated protein 99.9 2E-22 7E-27 117.2 11.3 85 62-147 6-90 (99)
48 2e5h_A Zinc finger CCHC-type a 99.9 3E-22 1E-26 115.4 11.9 83 62-144 12-94 (94)
49 4f25_A Polyadenylate-binding p 99.9 2.5E-22 8.5E-27 119.8 11.8 81 65-147 4-84 (115)
50 1oo0_B CG8781-PA, drosophila Y 99.9 2.1E-22 7.3E-27 119.2 11.5 86 62-147 22-107 (110)
51 1x4h_A RNA-binding protein 28; 99.9 3.6E-22 1.2E-26 118.4 12.3 87 61-147 10-102 (111)
52 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.7E-22 5.7E-27 118.1 10.5 85 63-147 9-93 (102)
53 2cph_A RNA binding motif prote 99.9 3E-22 1E-26 118.0 11.5 88 60-147 9-98 (107)
54 2div_A TRNA selenocysteine ass 99.9 3.1E-22 1.1E-26 116.4 11.4 85 63-147 6-95 (99)
55 2cpf_A RNA binding motif prote 99.9 2.6E-22 9E-27 116.5 11.0 83 65-147 4-89 (98)
56 1x5s_A Cold-inducible RNA-bind 99.9 1.8E-22 6.3E-27 118.0 10.2 86 62-147 8-93 (102)
57 3p5t_L Cleavage and polyadenyl 99.9 3.6E-23 1.2E-27 118.4 7.0 81 67-147 2-84 (90)
58 2dnm_A SRP46 splicing factor; 99.9 1.5E-22 5E-27 118.6 9.5 86 62-147 9-94 (103)
59 3ucg_A Polyadenylate-binding p 99.9 4E-22 1.4E-26 113.7 10.8 82 65-147 5-86 (89)
60 2d9p_A Polyadenylate-binding p 99.9 6.9E-22 2.4E-26 115.7 11.9 85 61-147 10-94 (103)
61 4a8x_A RNA-binding protein wit 99.9 2.6E-22 8.9E-27 114.3 9.8 83 65-147 3-86 (88)
62 2kxn_B Transformer-2 protein h 99.9 2E-22 6.8E-27 122.4 9.7 87 61-147 41-127 (129)
63 1wi8_A EIF-4B, eukaryotic tran 99.9 6.4E-22 2.2E-26 116.0 11.6 86 60-147 9-95 (104)
64 3ns6_A Eukaryotic translation 99.9 5.6E-23 1.9E-27 119.7 6.9 82 65-146 5-93 (100)
65 2dnh_A Bruno-like 5, RNA bindi 99.9 1.2E-21 4.2E-26 115.0 12.6 84 63-147 12-98 (105)
66 1u6f_A Tcubp1, RNA-binding pro 99.9 1.5E-21 5.2E-26 120.1 13.5 86 62-147 38-123 (139)
67 2ywk_A Putative RNA-binding pr 99.9 8.4E-22 2.9E-26 113.7 11.5 83 62-145 12-94 (95)
68 2dgp_A Bruno-like 4, RNA bindi 99.9 5.3E-22 1.8E-26 116.8 10.6 87 61-147 8-97 (106)
69 2dgx_A KIAA0430 protein; RRM d 99.9 1.2E-21 4.2E-26 113.3 11.9 82 63-147 6-91 (96)
70 2cq3_A RNA-binding protein 9; 99.9 3E-21 1E-25 113.0 13.5 85 61-147 10-94 (103)
71 2cqi_A Nucleolysin TIAR; RNA r 99.9 3.5E-21 1.2E-25 112.7 13.7 85 61-147 10-94 (103)
72 3ulh_A THO complex subunit 4; 99.9 1.6E-21 5.5E-26 114.9 12.3 83 62-145 25-107 (107)
73 1p1t_A Cleavage stimulation fa 99.9 2.3E-22 7.9E-27 117.9 8.5 84 64-147 6-89 (104)
74 2dgv_A HnRNP M, heterogeneous 99.9 9.9E-22 3.4E-26 112.8 11.0 83 63-147 5-87 (92)
75 2cpe_A RNA-binding protein EWS 99.9 1.1E-21 3.9E-26 116.6 11.5 86 62-147 11-104 (113)
76 2fy1_A RNA-binding motif prote 99.9 7.7E-22 2.6E-26 117.8 10.6 84 63-147 4-87 (116)
77 3s7r_A Heterogeneous nuclear r 99.9 2.2E-21 7.4E-26 110.2 11.8 80 63-143 8-87 (87)
78 2dhg_A TRNA selenocysteine ass 99.9 8.4E-22 2.9E-26 115.5 10.3 84 63-147 6-91 (104)
79 3n9u_C Cleavage and polyadenyl 99.9 9.1E-22 3.1E-26 123.1 10.9 82 65-146 54-137 (156)
80 2khc_A Testis-specific RNP-typ 99.9 7E-22 2.4E-26 118.4 10.0 83 62-144 36-118 (118)
81 2dh8_A DAZ-associated protein 99.9 1.5E-21 5.2E-26 114.6 11.0 86 61-147 11-96 (105)
82 2ek1_A RNA-binding protein 12; 99.9 5.4E-22 1.9E-26 114.5 8.8 82 64-145 13-94 (95)
83 2dgw_A Probable RNA-binding pr 99.9 4.4E-21 1.5E-25 109.8 12.5 82 63-147 7-88 (91)
84 3r27_A HnRNP L, heterogeneous 99.9 1.2E-21 4.1E-26 113.0 9.8 78 64-147 19-98 (100)
85 1h2v_Z 20 kDa nuclear CAP bind 99.9 3.8E-21 1.3E-25 120.5 12.9 84 63-146 36-119 (156)
86 1sjq_A Polypyrimidine tract-bi 99.9 8.9E-22 3E-26 114.6 9.3 79 63-147 13-93 (105)
87 2cqg_A TDP-43, TAR DNA-binding 99.9 1.1E-20 3.8E-25 110.5 14.1 85 61-147 10-94 (103)
88 2cqd_A RNA-binding region cont 99.9 3.5E-21 1.2E-25 115.0 12.1 85 61-146 12-96 (116)
89 2cpi_A CCR4-NOT transcription 99.9 1.9E-21 6.5E-26 115.3 10.5 86 62-147 11-102 (111)
90 3ex7_B RNA-binding protein 8A; 99.9 1.4E-21 4.9E-26 118.3 10.0 85 62-146 18-102 (126)
91 2rs2_A Musashi-1, RNA-binding 99.9 1.8E-21 6E-26 115.0 10.1 85 62-147 21-105 (109)
92 2j76_E EIF-4B, EIF4B, eukaryot 99.9 2.9E-22 1E-26 116.7 6.3 85 61-147 14-99 (100)
93 1x4a_A Splicing factor, argini 99.9 8.1E-21 2.8E-25 112.2 12.6 84 61-147 17-100 (109)
94 2do0_A HnRNP M, heterogeneous 99.9 1E-20 3.5E-25 112.6 13.0 84 62-146 11-94 (114)
95 2cq4_A RNA binding motif prote 99.9 6.3E-22 2.2E-26 117.9 7.6 81 65-146 24-104 (114)
96 2wbr_A GW182, gawky, LD47780P; 99.9 4.2E-21 1.4E-25 107.2 10.2 75 64-144 5-79 (89)
97 2m2b_A RNA-binding protein 10; 99.9 6.2E-22 2.1E-26 120.7 7.5 86 61-147 18-109 (131)
98 1s79_A Lupus LA protein; RRM, 99.9 1E-21 3.6E-26 114.7 8.0 80 64-145 9-88 (103)
99 2err_A Ataxin-2-binding protei 99.9 2.6E-21 8.9E-26 114.3 9.8 84 61-146 24-107 (109)
100 1x4e_A RNA binding motif, sing 99.9 2.3E-22 7.7E-27 113.8 5.0 82 64-145 3-84 (85)
101 1x4b_A Heterogeneous nuclear r 99.9 1.9E-21 6.5E-26 116.2 9.3 83 64-147 25-107 (116)
102 2kt5_A RNA and export factor-b 99.9 1.1E-20 3.7E-25 114.1 12.6 84 62-146 31-114 (124)
103 2jwn_A Embryonic polyadenylate 99.9 4.2E-21 1.4E-25 115.9 10.5 82 65-147 35-116 (124)
104 1x5o_A RNA binding motif, sing 99.9 1.1E-20 3.6E-25 112.6 11.8 84 63-147 22-113 (114)
105 2cq1_A PTB-like protein L; RRM 99.9 1.2E-20 3.9E-25 109.8 11.5 81 61-147 10-92 (101)
106 2dis_A Unnamed protein product 99.9 3.8E-21 1.3E-25 113.7 9.6 84 64-147 6-93 (109)
107 2mss_A Protein (musashi1); RNA 99.9 9.6E-22 3.3E-26 108.7 6.6 75 68-143 1-75 (75)
108 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 1E-20 3.6E-25 116.4 11.5 82 62-143 59-140 (140)
109 1x4d_A Matrin 3; structural ge 99.9 3.4E-21 1.2E-25 112.0 8.3 78 63-146 12-92 (102)
110 2ki2_A SS-DNA binding protein 99.9 5.1E-22 1.7E-26 113.5 4.7 80 67-147 2-81 (90)
111 1x4c_A Splicing factor, argini 99.9 2.4E-20 8E-25 110.0 11.7 79 62-147 11-94 (108)
112 1uaw_A Mouse-musashi-1; RNP-ty 99.9 1.7E-21 5.7E-26 108.2 6.4 76 67-143 1-76 (77)
113 2ad9_A Polypyrimidine tract-bi 99.8 8.7E-21 3E-25 112.9 9.8 80 62-147 27-108 (119)
114 2a3j_A U1 small nuclear ribonu 99.8 1.2E-20 4.2E-25 114.0 10.5 82 63-147 26-111 (127)
115 2nlw_A Eukaryotic translation 99.8 6.1E-21 2.1E-25 112.0 9.0 82 63-146 12-100 (105)
116 2db1_A Heterogeneous nuclear r 99.8 8.6E-21 2.9E-25 113.6 9.7 81 63-145 14-97 (118)
117 2dnq_A RNA-binding protein 4B; 99.8 1.9E-20 6.5E-25 107.0 10.7 77 63-147 5-81 (90)
118 1why_A Hypothetical protein ri 99.8 2.3E-20 7.9E-25 108.0 11.2 79 63-147 14-94 (97)
119 2fc8_A NCL protein; structure 99.8 3.3E-20 1.1E-24 108.3 11.9 84 61-147 10-93 (102)
120 2cpy_A RNA-binding protein 12; 99.8 6.3E-21 2.2E-25 113.5 8.8 83 62-146 11-94 (114)
121 2fc9_A NCL protein; structure 99.8 2E-20 7E-25 109.0 10.8 82 62-147 11-92 (101)
122 2hgl_A HNRPF protein, heteroge 99.8 5.1E-21 1.7E-25 116.9 8.4 83 62-146 40-125 (136)
123 2xnq_A Nuclear polyadenylated 99.8 3.2E-20 1.1E-24 107.4 11.3 79 61-147 17-96 (97)
124 1wex_A Hypothetical protein (r 99.8 1.6E-20 5.4E-25 109.8 9.6 79 63-147 12-92 (104)
125 2cpj_A Non-POU domain-containi 99.8 1.7E-20 5.9E-25 109.0 9.7 80 62-147 11-90 (99)
126 2dgt_A RNA-binding protein 30; 99.8 5.9E-20 2E-24 105.3 11.9 78 62-147 6-83 (92)
127 1wel_A RNA-binding protein 12; 99.8 2.8E-21 9.4E-26 116.7 6.6 84 62-146 21-104 (124)
128 2e5j_A Methenyltetrahydrofolat 99.8 2.9E-20 1E-24 107.6 10.7 80 63-147 16-95 (97)
129 1fj7_A Nucleolin RBD1, protein 99.8 1.2E-21 4E-26 114.3 4.7 84 62-147 13-96 (101)
130 2dnn_A RNA-binding protein 12; 99.8 1.5E-20 5.2E-25 110.7 9.4 79 64-145 14-92 (109)
131 2jvr_A Nucleolar protein 3; RN 99.8 2.4E-20 8.3E-25 110.1 10.2 79 64-146 26-105 (111)
132 1nu4_A U1A RNA binding domain; 99.8 7.6E-21 2.6E-25 110.1 7.9 82 63-147 5-90 (97)
133 1fjc_A Nucleolin RBD2, protein 99.8 1.7E-20 5.7E-25 108.4 9.2 81 62-147 12-92 (96)
134 1x4g_A Nucleolysin TIAR; struc 99.8 3.2E-20 1.1E-24 109.6 10.6 78 64-147 23-100 (109)
135 2jvo_A Nucleolar protein 3; nu 99.8 2.7E-20 9.1E-25 109.8 10.2 78 62-147 27-104 (108)
136 1wg5_A Heterogeneous nuclear r 99.8 1.8E-20 6.1E-25 109.8 9.3 82 63-146 12-94 (104)
137 2cpx_A Hypothetical protein FL 99.8 5.6E-21 1.9E-25 113.9 7.2 85 63-147 22-106 (115)
138 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-19 4.7E-24 105.1 12.8 80 60-147 9-90 (99)
139 2ytc_A PRE-mRNA-splicing facto 99.8 5.1E-20 1.8E-24 104.0 10.7 77 62-144 8-85 (85)
140 3lqv_A PRE-mRNA branch site pr 99.8 1.6E-20 5.4E-25 112.0 8.8 81 63-146 5-85 (115)
141 1wez_A HnRNP H', FTP-3, hetero 99.8 1.4E-20 4.8E-25 109.8 8.4 82 62-146 11-92 (102)
142 2la4_A Nuclear and cytoplasmic 99.8 2.9E-20 9.8E-25 108.4 9.4 76 65-146 26-101 (101)
143 2dnp_A RNA-binding protein 14; 99.8 7.8E-20 2.7E-24 104.4 11.0 77 63-147 6-82 (90)
144 2dgu_A Heterogeneous nuclear r 99.8 1E-19 3.5E-24 106.4 11.7 77 63-147 8-84 (103)
145 1iqt_A AUF1, heterogeneous nuc 99.8 5E-21 1.7E-25 105.8 5.3 75 68-143 1-75 (75)
146 2krb_A Eukaryotic translation 99.8 6.4E-21 2.2E-25 106.9 5.6 73 66-140 1-80 (81)
147 1fxl_A Paraneoplastic encephal 99.8 1.3E-19 4.5E-24 114.2 12.4 81 66-146 2-82 (167)
148 4f02_A Polyadenylate-binding p 99.8 1.2E-19 4.2E-24 119.0 12.4 84 63-146 12-95 (213)
149 3q2s_C Cleavage and polyadenyl 99.8 1.9E-20 6.5E-25 123.9 8.4 81 65-145 67-149 (229)
150 2hvz_A Splicing factor, argini 99.8 2E-20 7E-25 109.0 7.5 75 67-146 1-75 (101)
151 2lmi_A GRSF-1, G-rich sequence 99.8 5.9E-21 2E-25 112.4 5.2 83 62-146 7-92 (107)
152 2xs2_A Deleted in azoospermia- 99.8 2.3E-20 7.8E-25 109.0 7.6 81 63-146 6-86 (102)
153 1b7f_A Protein (SXL-lethal pro 99.8 9.8E-20 3.3E-24 115.0 10.9 83 65-147 2-84 (168)
154 2cqh_A IGF-II mRNA-binding pro 99.8 6.1E-20 2.1E-24 105.4 9.0 77 64-147 6-84 (93)
155 1wf1_A RNA-binding protein RAL 99.8 1.2E-19 4E-24 107.4 10.5 76 63-146 24-100 (110)
156 1x4f_A Matrin 3; structural ge 99.8 2.6E-20 8.8E-25 109.8 7.3 79 63-147 22-103 (112)
157 2e44_A Insulin-like growth fac 99.8 1.2E-19 4.1E-24 104.8 9.8 80 63-146 12-92 (96)
158 1sjr_A Polypyrimidine tract-bi 99.8 2E-19 6.7E-24 112.2 11.4 80 64-147 44-125 (164)
159 2j8a_A Histone-lysine N-methyl 99.8 9.2E-20 3.1E-24 108.4 9.3 80 66-145 2-95 (136)
160 2hgn_A Heterogeneous nuclear r 99.8 5.2E-21 1.8E-25 117.2 3.9 122 18-146 2-123 (139)
161 2lcw_A RNA-binding protein FUS 99.7 7.1E-22 2.4E-26 118.0 0.0 84 64-147 5-96 (116)
162 3egn_A RNA-binding protein 40; 99.8 3.8E-20 1.3E-24 114.3 7.3 82 63-147 42-131 (143)
163 2f3j_A RNA and export factor b 99.8 1.4E-19 4.9E-24 115.3 9.9 82 64-146 86-167 (177)
164 1whx_A Hypothetical protein ri 99.8 7.5E-20 2.6E-24 108.3 7.7 77 64-146 8-84 (111)
165 3zzy_A Polypyrimidine tract-bi 99.8 5.9E-19 2E-23 106.3 11.6 77 65-146 27-106 (130)
166 2kvi_A Nuclear polyadenylated 99.8 1.1E-19 3.7E-24 105.0 8.1 76 63-146 7-83 (96)
167 2dha_A FLJ20171 protein; RRM d 99.8 6.4E-20 2.2E-24 110.1 7.2 80 64-145 21-104 (123)
168 1wg1_A KIAA1579 protein, homol 99.8 3.1E-19 1.1E-23 101.5 9.3 75 65-146 4-78 (88)
169 2e5g_A U6 snRNA-specific termi 99.8 4.3E-19 1.5E-23 102.1 9.9 78 64-147 6-83 (94)
170 1l3k_A Heterogeneous nuclear r 99.8 8.7E-19 3E-23 113.2 12.1 84 62-146 9-92 (196)
171 3pgw_S U1-70K; protein-RNA com 99.8 5.6E-19 1.9E-23 126.6 12.2 84 63-146 99-182 (437)
172 2voo_A Lupus LA protein; RNA-b 99.8 1.2E-18 4E-23 112.6 12.5 117 26-145 63-186 (193)
173 1x5p_A Negative elongation fac 99.8 3.1E-18 1E-22 99.0 12.5 77 63-147 12-88 (97)
174 2hgm_A HNRPF protein, heteroge 99.8 1.1E-19 3.8E-24 109.4 6.0 80 63-145 39-120 (126)
175 2e5i_A Heterogeneous nuclear r 99.8 3.2E-18 1.1E-22 102.6 12.3 75 67-147 26-103 (124)
176 2diu_A KIAA0430 protein; struc 99.8 9.6E-19 3.3E-23 98.6 9.1 73 66-148 8-86 (96)
177 2pe8_A Splicing factor 45; RRM 99.8 2.4E-18 8.2E-23 100.7 11.2 82 64-145 6-93 (105)
178 3beg_B Splicing factor, argini 99.8 3.7E-19 1.3E-23 106.0 7.5 76 64-146 14-94 (115)
179 2cq2_A Hypothetical protein LO 99.8 6.5E-19 2.2E-23 103.9 8.3 77 63-145 22-105 (114)
180 3md3_A Nuclear and cytoplasmic 99.8 2E-18 6.8E-23 108.6 10.4 79 67-146 1-79 (166)
181 3d2w_A TAR DNA-binding protein 99.8 2.1E-18 7.1E-23 98.2 9.0 77 62-147 7-85 (89)
182 3tyt_A Heterogeneous nuclear r 99.8 2.6E-18 9.1E-23 111.9 9.6 76 65-145 3-79 (205)
183 2qfj_A FBP-interacting repress 99.8 2.3E-18 7.9E-23 112.8 9.2 82 65-146 27-108 (216)
184 2hzc_A Splicing factor U2AF 65 99.8 4.6E-18 1.6E-22 96.3 9.1 72 64-142 4-86 (87)
185 2dnl_A Cytoplasmic polyadenyla 99.8 3.1E-18 1.1E-22 101.8 8.2 64 64-128 6-72 (114)
186 3nmr_A Cugbp ELAV-like family 99.8 9.3E-18 3.2E-22 106.5 10.7 82 65-146 2-88 (175)
187 2bz2_A Negative elongation fac 99.7 9.5E-18 3.2E-22 100.6 9.3 77 63-147 36-112 (121)
188 1wf0_A TDP-43, TAR DNA-binding 99.7 2.3E-18 7.8E-23 97.9 6.0 76 65-147 4-79 (88)
189 2cjk_A Nuclear polyadenylated 99.7 4.8E-18 1.7E-22 107.1 7.6 80 65-146 2-81 (167)
190 2dit_A HIV TAT specific factor 99.7 6.4E-17 2.2E-21 95.8 11.7 83 61-147 10-103 (112)
191 3pgw_A U1-A; protein-RNA compl 99.7 2.9E-17 9.8E-22 111.8 11.3 81 63-146 6-90 (282)
192 3u1l_A PRE-mRNA-splicing facto 99.7 2.6E-17 8.7E-22 108.9 8.3 80 62-147 130-230 (240)
193 2adc_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 108.3 9.1 79 63-146 31-110 (229)
194 3v4m_A Splicing factor U2AF 65 99.7 6.7E-17 2.3E-21 94.5 9.1 81 65-145 4-96 (105)
195 1fje_B Nucleolin RBD12, protei 99.7 8.6E-18 2.9E-22 106.8 4.8 83 62-146 9-91 (175)
196 3ue2_A Poly(U)-binding-splicin 99.7 2.4E-16 8.2E-21 93.9 9.6 80 65-144 19-107 (118)
197 3sde_A Paraspeckle component 1 99.7 3.7E-16 1.3E-20 105.3 11.5 79 62-146 18-96 (261)
198 1qm9_A Polypyrimidine tract-bi 99.7 5E-17 1.7E-21 105.2 6.7 76 66-146 3-79 (198)
199 1jmt_A Splicing factor U2AF 35 99.7 4E-17 1.4E-21 95.4 5.1 72 71-143 20-103 (104)
200 4f25_A Polyadenylate-binding p 99.7 1.6E-16 5.4E-21 94.6 6.9 79 1-81 31-112 (115)
201 2g4b_A Splicing factor U2AF 65 99.7 9.7E-16 3.3E-20 96.9 9.6 75 65-146 3-88 (172)
202 2yh0_A Splicing factor U2AF 65 99.6 1.6E-15 5.6E-20 97.9 9.3 75 65-146 3-88 (198)
203 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.4E-14 4.7E-19 83.7 10.8 65 76-147 27-91 (100)
204 3s6e_A RNA-binding protein 39; 99.6 6.7E-15 2.3E-19 87.0 9.2 78 64-145 5-92 (114)
205 4fxv_A ELAV-like protein 1; RN 99.6 8.4E-15 2.9E-19 84.8 7.1 54 1-54 45-98 (99)
206 3tht_A Alkylated DNA repair pr 99.6 2.8E-14 9.6E-19 99.0 9.9 78 61-144 13-97 (345)
207 2lxi_A RNA-binding protein 10; 99.5 1.2E-14 4.2E-19 82.8 6.0 58 1-58 28-86 (91)
208 3p5t_L Cleavage and polyadenyl 99.5 1.1E-14 3.7E-19 82.9 4.4 58 1-58 29-86 (90)
209 3s8s_A Histone-lysine N-methyl 99.5 6.7E-14 2.3E-18 82.4 7.3 55 1-55 32-86 (110)
210 2lkz_A RNA-binding protein 5; 99.5 3.9E-14 1.3E-18 81.2 5.6 53 2-54 38-94 (95)
211 3md1_A Nuclear and cytoplasmic 99.5 2.9E-13 1E-17 75.6 7.6 55 1-55 27-81 (83)
212 2dnr_A Synaptojanin-1; RRM dom 99.5 7E-13 2.4E-17 74.1 8.4 73 65-146 6-86 (91)
213 2cq0_A Eukaryotic translation 99.5 5.3E-13 1.8E-17 77.6 8.2 58 1-58 41-98 (103)
214 2cqb_A Peptidyl-prolyl CIS-tra 99.4 4.1E-13 1.4E-17 78.0 7.5 59 1-59 38-96 (102)
215 3bs9_A Nucleolysin TIA-1 isofo 99.4 3.3E-13 1.1E-17 76.1 6.9 55 1-55 32-86 (87)
216 1whw_A Hypothetical protein ri 99.4 6.5E-13 2.2E-17 76.7 8.3 58 1-58 34-91 (99)
217 2x1f_A MRNA 3'-END-processing 99.4 4.2E-13 1.4E-17 77.1 7.1 57 1-57 28-84 (96)
218 3ns6_A Eukaryotic translation 99.4 1.9E-13 6.3E-18 79.2 5.5 54 1-54 38-92 (100)
219 2cpz_A CUG triplet repeat RNA- 99.4 6.9E-13 2.4E-17 78.7 8.2 59 1-59 51-109 (115)
220 1x5t_A Splicing factor 3B subu 99.4 7.9E-13 2.7E-17 75.9 8.1 58 1-58 31-89 (96)
221 2dnz_A Probable RNA-binding pr 99.4 7.8E-13 2.7E-17 75.8 8.0 58 1-58 31-88 (95)
222 2dgo_A Cytotoxic granule-assoc 99.4 1.2E-12 4E-17 77.7 8.9 58 1-58 41-98 (115)
223 2dgs_A DAZ-associated protein 99.4 1E-12 3.5E-17 75.9 7.9 58 1-59 36-93 (99)
224 2dng_A Eukaryotic translation 99.4 1E-12 3.4E-17 76.5 7.7 56 2-58 41-96 (103)
225 1owx_A Lupus LA protein, SS-B, 99.4 1.2E-12 4.2E-17 77.6 7.9 76 63-144 15-94 (121)
226 3mdf_A Peptidyl-prolyl CIS-tra 99.4 5.9E-13 2E-17 74.7 6.3 53 1-53 33-85 (85)
227 1x5s_A Cold-inducible RNA-bind 99.4 8.4E-13 2.9E-17 76.6 6.7 58 1-58 38-95 (102)
228 2do4_A Squamous cell carcinoma 99.4 1.3E-12 4.5E-17 75.6 7.5 56 1-57 43-98 (100)
229 2dnm_A SRP46 splicing factor; 99.4 6.9E-13 2.4E-17 77.1 6.1 59 1-59 39-97 (103)
230 2jrs_A RNA-binding protein 39; 99.4 7E-13 2.4E-17 77.8 6.2 55 1-55 52-106 (108)
231 2cqc_A Arginine/serine-rich sp 99.4 1.2E-12 4.2E-17 74.9 6.9 54 1-54 41-94 (95)
232 2fy1_A RNA-binding motif prote 99.4 1.7E-12 6E-17 77.1 7.8 56 1-57 33-88 (116)
233 3n9u_C Cleavage and polyadenyl 99.4 1.1E-12 3.7E-17 81.9 7.1 54 1-54 83-136 (156)
234 1p27_B RNA-binding protein 8A; 99.4 7.6E-13 2.6E-17 77.3 6.1 55 1-55 49-103 (106)
235 1x5u_A Splicing factor 3B subu 99.4 1.4E-12 4.7E-17 76.1 7.1 58 1-58 41-98 (105)
236 1x4h_A RNA-binding protein 28; 99.4 2.4E-12 8.3E-17 75.8 8.1 58 1-58 41-104 (111)
237 2e5h_A Zinc finger CCHC-type a 99.4 1.3E-12 4.5E-17 74.7 6.7 53 1-53 42-94 (94)
238 2kxn_B Transformer-2 protein h 99.4 1E-12 3.4E-17 79.5 6.4 56 1-56 72-127 (129)
239 2hvz_A Splicing factor, argini 99.4 6.7E-13 2.3E-17 76.9 5.4 70 1-75 26-100 (101)
240 2dgw_A Probable RNA-binding pr 99.4 1.9E-12 6.5E-17 73.6 7.1 54 1-56 35-88 (91)
241 3ucg_A Polyadenylate-binding p 99.4 1.6E-12 5.4E-17 73.5 6.7 55 1-56 32-86 (89)
242 3lqv_A PRE-mRNA branch site pr 99.4 3.1E-13 1.1E-17 80.1 3.8 76 1-92 34-109 (115)
243 2cpf_A RNA binding motif prote 99.4 1.6E-12 5.5E-17 74.9 6.7 59 1-59 31-92 (98)
244 2dgp_A Bruno-like 4, RNA bindi 99.4 2.5E-12 8.5E-17 75.1 7.4 58 1-58 39-99 (106)
245 2la6_A RNA-binding protein FUS 99.4 1.6E-12 5.6E-17 75.0 6.5 48 5-52 51-98 (99)
246 1oo0_B CG8781-PA, drosophila Y 99.4 1.4E-12 4.9E-17 76.7 6.4 56 1-56 52-107 (110)
247 2cqp_A RNA-binding protein 12; 99.4 1.9E-12 6.4E-17 74.6 6.7 55 2-56 42-96 (98)
248 2cph_A RNA binding motif prote 99.4 3E-12 1E-16 74.9 7.5 59 1-59 41-101 (107)
249 1p1t_A Cleavage stimulation fa 99.4 1.4E-12 4.6E-17 76.0 6.0 56 1-56 34-89 (104)
250 1u6f_A Tcubp1, RNA-binding pro 99.4 3.3E-12 1.1E-16 78.2 7.9 58 1-58 68-125 (139)
251 2div_A TRNA selenocysteine ass 99.4 1.8E-12 6.1E-17 74.8 6.4 55 2-56 36-95 (99)
252 2dhg_A TRNA selenocysteine ass 99.4 1.9E-12 6.4E-17 75.4 6.5 57 1-58 36-93 (104)
253 2kn4_A Immunoglobulin G-bindin 99.4 2.4E-12 8E-17 80.4 7.3 58 1-58 96-153 (158)
254 2fc8_A NCL protein; structure 99.4 4E-12 1.4E-16 73.7 7.5 56 3-58 40-95 (102)
255 2cpe_A RNA-binding protein EWS 99.4 4.4E-12 1.5E-16 74.9 7.8 55 4-58 52-106 (113)
256 2pe8_A Splicing factor 45; RRM 99.3 3.7E-12 1.3E-16 74.3 7.2 54 1-54 39-93 (105)
257 4a8x_A RNA-binding protein wit 99.3 1.9E-12 6.4E-17 73.1 5.8 56 1-56 30-86 (88)
258 2dnh_A Bruno-like 5, RNA bindi 99.3 3.7E-12 1.3E-16 74.3 7.3 58 1-59 41-101 (105)
259 2kt5_A RNA and export factor-b 99.3 5.4E-12 1.8E-16 75.8 8.2 58 1-59 61-118 (124)
260 2d9p_A Polyadenylate-binding p 99.3 4.9E-12 1.7E-16 73.5 7.6 57 1-59 41-97 (103)
261 2ki2_A SS-DNA binding protein 99.3 8.1E-13 2.8E-17 75.0 4.1 56 1-57 27-82 (90)
262 1wi8_A EIF-4B, eukaryotic tran 99.3 4.1E-12 1.4E-16 74.0 7.1 56 2-58 41-97 (104)
263 1jmt_A Splicing factor U2AF 35 99.3 2.4E-12 8.3E-17 74.9 5.9 51 1-52 53-103 (104)
264 2mss_A Protein (musashi1); RNA 99.3 1.3E-12 4.3E-17 71.6 4.3 51 1-52 25-75 (75)
265 2jwn_A Embryonic polyadenylate 99.3 8.2E-12 2.8E-16 74.9 8.1 57 1-58 62-118 (124)
266 3ulh_A THO complex subunit 4; 99.3 4.6E-12 1.6E-16 74.1 6.8 52 1-53 55-106 (107)
267 2ek1_A RNA-binding protein 12; 99.3 3.3E-12 1.1E-16 73.1 5.9 52 2-53 42-93 (95)
268 2do0_A HnRNP M, heterogeneous 99.3 1.3E-11 4.6E-16 72.9 8.6 56 1-57 41-96 (114)
269 1ufw_A Synaptojanin 2; RNP dom 99.3 5.9E-12 2E-16 70.7 6.4 73 64-145 13-94 (95)
270 2dgx_A KIAA0430 protein; RRM d 99.3 8E-12 2.7E-16 71.7 7.2 53 1-56 39-91 (96)
271 2cqd_A RNA-binding region cont 99.3 8.4E-12 2.9E-16 74.1 7.5 55 1-56 43-97 (116)
272 1h2v_Z 20 kDa nuclear CAP bind 99.3 8.7E-12 3E-16 77.7 7.9 57 1-57 65-121 (156)
273 2dh8_A DAZ-associated protein 99.3 4.7E-12 1.6E-16 73.8 6.2 57 1-58 42-98 (105)
274 2j76_E EIF-4B, EIF4B, eukaryot 99.3 2.5E-12 8.7E-17 74.4 4.9 53 2-55 45-98 (100)
275 2ywk_A Putative RNA-binding pr 99.3 6.3E-12 2.2E-16 71.9 6.4 52 1-53 42-93 (95)
276 3ex7_B RNA-binding protein 8A; 99.3 4.4E-12 1.5E-16 76.3 5.7 57 1-57 48-104 (126)
277 2lea_A Serine/arginine-rich sp 99.3 3.5E-12 1.2E-16 77.7 5.2 58 1-58 73-130 (135)
278 2cpi_A CCR4-NOT transcription 99.3 1.1E-11 3.8E-16 73.0 7.2 56 1-56 44-102 (111)
279 2khc_A Testis-specific RNP-typ 99.3 3.2E-12 1.1E-16 76.1 4.9 51 2-52 67-117 (118)
280 2rs2_A Musashi-1, RNA-binding 99.3 1.1E-11 3.9E-16 72.7 7.2 56 1-57 51-106 (109)
281 1x4b_A Heterogeneous nuclear r 99.3 1.5E-11 5.1E-16 72.9 7.5 57 1-58 53-109 (116)
282 3dxb_A Thioredoxin N-terminall 99.3 1.6E-11 5.5E-16 80.7 8.2 67 78-144 141-211 (222)
283 2cqi_A Nucleolysin TIAR; RNA r 99.3 3.1E-11 1E-15 70.1 8.6 56 1-58 41-96 (103)
284 3v4m_A Splicing factor U2AF 65 99.3 9.1E-12 3.1E-16 72.6 6.2 53 1-53 41-95 (105)
285 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 6.5E-12 2.2E-16 76.8 5.9 52 1-52 89-140 (140)
286 2dis_A Unnamed protein product 99.3 1.4E-11 4.6E-16 72.3 6.9 56 2-57 36-94 (109)
287 2dnn_A RNA-binding protein 12; 99.3 1.3E-11 4.6E-16 72.3 6.7 51 1-53 41-91 (109)
288 2m2b_A RNA-binding protein 10; 99.3 4.1E-12 1.4E-16 77.0 4.6 55 2-57 50-110 (131)
289 1uaw_A Mouse-musashi-1; RNP-ty 99.3 4.6E-12 1.6E-16 69.7 4.4 51 1-52 26-76 (77)
290 2cq4_A RNA binding motif prote 99.3 6.4E-12 2.2E-16 74.3 5.3 53 1-54 51-103 (114)
291 3s7r_A Heterogeneous nuclear r 99.3 1.3E-11 4.4E-16 69.5 6.3 51 1-52 37-87 (87)
292 2wbr_A GW182, gawky, LD47780P; 99.3 1.6E-11 5.4E-16 68.5 6.2 46 1-52 33-78 (89)
293 2cq3_A RNA-binding protein 9; 99.3 4.5E-11 1.5E-15 69.4 8.5 56 1-58 41-96 (103)
294 3q2s_C Cleavage and polyadenyl 99.3 5.7E-12 1.9E-16 83.3 5.0 54 1-54 96-149 (229)
295 2dgv_A HnRNP M, heterogeneous 99.3 1.4E-11 4.7E-16 70.1 5.9 55 1-57 34-88 (92)
296 1x4e_A RNA binding motif, sing 99.2 1.7E-12 5.9E-17 72.8 2.0 53 1-53 31-83 (85)
297 2fc9_A NCL protein; structure 99.2 4.4E-11 1.5E-15 69.2 7.9 55 3-58 40-94 (101)
298 2cqg_A TDP-43, TAR DNA-binding 99.2 4.8E-11 1.6E-15 69.3 7.9 56 1-58 41-96 (103)
299 1rk8_A CG8781-PA, CG8781-PA pr 99.2 1.7E-11 5.9E-16 77.1 6.4 57 1-57 98-154 (165)
300 1x5o_A RNA binding motif, sing 99.2 2.1E-11 7.3E-16 72.0 6.4 54 1-55 51-112 (114)
301 2nlw_A Eukaryotic translation 99.2 1.2E-11 4.1E-16 72.1 5.3 53 1-55 47-100 (105)
302 1s79_A Lupus LA protein; RRM, 99.2 1.1E-11 3.8E-16 72.0 5.1 51 1-53 37-87 (103)
303 2a3j_A U1 small nuclear ribonu 99.2 1.9E-11 6.7E-16 73.5 6.0 52 2-56 60-111 (127)
304 2db1_A Heterogeneous nuclear r 99.2 1.8E-11 6.1E-16 72.9 5.6 50 2-53 47-96 (118)
305 3ue2_A Poly(U)-binding-splicin 99.2 1.7E-11 5.9E-16 72.8 5.4 53 1-53 51-107 (118)
306 2hgl_A HNRPF protein, heteroge 99.2 1.4E-11 4.8E-16 75.0 5.0 50 2-53 74-123 (136)
307 1wez_A HnRNP H', FTP-3, hetero 99.2 2.5E-11 8.4E-16 70.4 5.8 53 3-57 42-94 (102)
308 2cpy_A RNA-binding protein 12; 99.2 1.6E-11 5.6E-16 72.6 4.9 51 3-55 44-94 (114)
309 2cpx_A Hypothetical protein FL 99.2 3.7E-11 1.3E-15 71.1 5.7 56 4-59 54-109 (115)
310 1iqt_A AUF1, heterogeneous nuc 99.2 1E-11 3.6E-16 67.9 3.1 51 1-52 25-75 (75)
311 1fj7_A Nucleolin RBD1, protein 99.2 1.1E-11 3.8E-16 71.7 2.8 51 6-57 47-97 (101)
312 2lmi_A GRSF-1, G-rich sequence 99.2 1.8E-11 6.1E-16 71.6 3.6 51 2-54 41-91 (107)
313 2krb_A Eukaryotic translation 99.2 1.3E-11 4.5E-16 68.5 2.9 47 1-49 33-80 (81)
314 2err_A Ataxin-2-binding protei 99.2 6.8E-11 2.3E-15 69.4 5.9 53 1-55 55-107 (109)
315 1wg5_A Heterogeneous nuclear r 99.2 8.2E-11 2.8E-15 68.4 6.1 53 2-56 42-95 (104)
316 1x4a_A Splicing factor, argini 99.1 2.4E-10 8.3E-15 66.9 7.9 54 2-58 49-102 (109)
317 2j8a_A Histone-lysine N-methyl 99.1 8.2E-11 2.8E-15 70.1 5.7 54 1-54 32-95 (136)
318 2lcw_A RNA-binding protein FUS 98.7 4.3E-12 1.5E-16 75.3 0.0 53 5-57 45-97 (116)
319 1wel_A RNA-binding protein 12; 99.1 2.9E-11 1E-15 72.5 3.3 52 2-54 52-103 (124)
320 2f3j_A RNA and export factor b 99.1 9.7E-11 3.3E-15 74.5 5.8 55 1-56 114-168 (177)
321 1sjq_A Polypyrimidine tract-bi 99.1 1.4E-10 4.7E-15 67.3 5.9 53 1-59 42-96 (105)
322 2l9w_A U4/U6 snRNA-associated- 99.1 1.6E-09 5.6E-14 62.1 9.8 72 64-141 19-95 (117)
323 1x4g_A Nucleolysin TIAR; struc 99.1 4.2E-10 1.4E-14 65.9 7.7 52 1-58 51-102 (109)
324 1nu4_A U1A RNA binding domain; 99.1 5.5E-11 1.9E-15 68.2 3.8 52 2-56 39-90 (97)
325 1x5p_A Negative elongation fac 99.1 5.4E-10 1.8E-14 64.1 7.5 51 2-58 40-90 (97)
326 1fjc_A Nucleolin RBD2, protein 99.1 1.4E-10 4.8E-15 66.4 5.0 51 4-56 42-92 (96)
327 3r27_A HnRNP L, heterogeneous 99.1 2.4E-10 8.3E-15 65.7 5.9 50 1-56 47-98 (100)
328 2xs2_A Deleted in azoospermia- 99.1 6.1E-11 2.1E-15 68.7 3.3 53 1-56 35-87 (102)
329 3pgw_S U1-70K; protein-RNA com 99.1 2.7E-10 9.3E-15 81.8 7.2 56 1-56 128-183 (437)
330 3zzy_A Polypyrimidine tract-bi 99.1 6.7E-10 2.3E-14 66.8 7.8 53 1-58 54-109 (130)
331 1sjr_A Polypyrimidine tract-bi 99.1 4.8E-10 1.7E-14 69.9 7.3 53 1-57 72-126 (164)
332 2jvr_A Nucleolar protein 3; RN 99.1 3.1E-10 1.1E-14 66.7 6.0 50 2-55 56-105 (111)
333 2dha_A FLJ20171 protein; RRM d 99.1 7.8E-11 2.7E-15 70.5 3.5 50 2-53 54-103 (123)
334 2cq1_A PTB-like protein L; RRM 99.1 8.8E-10 3E-14 63.7 7.6 53 1-59 41-95 (101)
335 2ad9_A Polypyrimidine tract-bi 99.1 5.6E-10 1.9E-14 66.2 6.9 53 1-59 57-111 (119)
336 2dit_A HIV TAT specific factor 99.1 1.3E-09 4.3E-14 64.2 8.4 52 1-56 52-103 (112)
337 2dnq_A RNA-binding protein 4B; 99.1 8.5E-10 2.9E-14 62.3 7.4 49 2-58 35-83 (90)
338 2hgm_A HNRPF protein, heteroge 99.1 8.5E-11 2.9E-15 70.5 3.0 48 4-53 72-119 (126)
339 3s6e_A RNA-binding protein 39; 99.0 3.6E-10 1.2E-14 66.7 5.6 49 1-53 43-91 (114)
340 1wex_A Hypothetical protein (r 99.0 4.2E-10 1.4E-14 65.4 5.8 53 1-59 41-95 (104)
341 1wg1_A KIAA1579 protein, homol 99.0 5.6E-10 1.9E-14 62.9 6.0 48 2-55 31-78 (88)
342 1x4d_A Matrin 3; structural ge 99.0 4E-10 1.4E-14 65.2 5.4 51 1-57 42-94 (102)
343 2hgn_A Heterogeneous nuclear r 99.0 6.3E-11 2.1E-15 72.4 2.1 54 2-57 72-125 (139)
344 1why_A Hypothetical protein ri 99.0 5.7E-10 2E-14 63.9 6.0 49 2-56 44-94 (97)
345 1x4c_A Splicing factor, argini 99.0 1.5E-09 5.3E-14 63.4 7.8 51 1-58 41-96 (108)
346 2la4_A Nuclear and cytoplasmic 99.0 4.6E-10 1.6E-14 64.8 5.4 47 2-54 54-100 (101)
347 3egn_A RNA-binding protein 40; 99.0 2.2E-10 7.7E-15 70.3 4.1 47 12-58 87-133 (143)
348 2e5j_A Methenyltetrahydrofolat 99.0 9E-10 3.1E-14 63.1 6.3 48 5-56 48-95 (97)
349 2cpj_A Non-POU domain-containi 99.0 9.6E-10 3.3E-14 63.2 6.3 51 1-57 41-91 (99)
350 2i2y_A Fusion protein consists 99.0 7.5E-10 2.6E-14 68.5 6.0 50 1-55 99-148 (150)
351 2jvo_A Nucleolar protein 3; nu 99.0 1.3E-09 4.3E-14 63.8 6.6 48 1-56 57-104 (108)
352 1wf1_A RNA-binding protein RAL 99.0 1.2E-09 4.2E-14 64.0 6.5 49 2-58 55-103 (110)
353 2bz2_A Negative elongation fac 99.0 1.2E-09 4.1E-14 65.2 6.4 50 2-57 64-113 (121)
354 2dgu_A Heterogeneous nuclear r 99.0 3.4E-09 1.2E-13 61.3 7.9 49 2-58 38-86 (103)
355 2cpd_A Apobec-1 stimulating pr 99.0 3.4E-09 1.2E-13 60.9 7.7 41 17-57 51-91 (99)
356 2diu_A KIAA0430 protein; struc 99.0 1.9E-09 6.4E-14 60.8 6.3 41 18-58 47-87 (96)
357 2xnq_A Nuclear polyadenylated 99.0 2.3E-09 8E-14 61.4 6.9 39 17-55 57-95 (97)
358 2ytc_A PRE-mRNA-splicing facto 99.0 1.4E-09 4.7E-14 60.7 5.6 46 2-53 39-85 (85)
359 1x4f_A Matrin 3; structural ge 99.0 1.3E-09 4.3E-14 64.0 5.6 51 1-57 52-104 (112)
360 2dgt_A RNA-binding protein 30; 99.0 4.4E-09 1.5E-13 59.6 7.8 49 2-58 37-85 (92)
361 2cq2_A Hypothetical protein LO 99.0 1.6E-09 5.4E-14 63.7 5.9 49 2-56 54-107 (114)
362 2dnp_A RNA-binding protein 14; 98.9 4.6E-09 1.6E-13 59.3 7.1 49 2-58 36-84 (90)
363 2d9o_A DNAJ (HSP40) homolog, s 98.9 4.8E-09 1.6E-13 60.4 7.1 51 1-58 43-93 (100)
364 1whx_A Hypothetical protein ri 98.9 2.2E-09 7.4E-14 63.1 5.7 48 2-55 37-84 (111)
365 2e5i_A Heterogeneous nuclear r 98.9 5.8E-09 2E-13 62.3 7.6 51 1-57 51-104 (124)
366 2cqh_A IGF-II mRNA-binding pro 98.9 4.6E-09 1.6E-13 59.6 6.2 43 16-58 43-86 (93)
367 2e5g_A U6 snRNA-specific termi 98.9 4.7E-09 1.6E-13 59.7 6.2 51 2-58 35-85 (94)
368 2kvi_A Nuclear polyadenylated 98.9 2.8E-09 9.5E-14 60.9 5.1 48 2-57 38-85 (96)
369 2hzc_A Splicing factor U2AF 65 98.9 3.2E-09 1.1E-13 59.5 5.3 35 16-51 52-86 (87)
370 2dnl_A Cytoplasmic polyadenyla 98.9 8.5E-09 2.9E-13 60.8 6.5 47 2-51 35-84 (114)
371 2e44_A Insulin-like growth fac 98.9 6.1E-09 2.1E-13 59.4 5.7 51 1-55 41-92 (96)
372 2voo_A Lupus LA protein; RNA-b 98.8 7.6E-09 2.6E-13 66.6 6.6 52 1-54 135-186 (193)
373 3beg_B Splicing factor, argini 98.8 9.2E-09 3.1E-13 60.8 5.5 48 1-55 42-94 (115)
374 3dxb_A Thioredoxin N-terminall 98.8 9.6E-09 3.3E-13 67.4 6.0 53 1-53 155-211 (222)
375 3u1l_A PRE-mRNA-splicing facto 98.7 3.3E-08 1.1E-12 65.4 5.7 49 1-55 169-229 (240)
376 3d2w_A TAR DNA-binding protein 98.6 1.1E-07 3.6E-12 53.6 5.7 47 1-56 37-85 (89)
377 2dnr_A Synaptojanin-1; RRM dom 98.6 1.1E-07 3.6E-12 53.2 5.2 45 1-54 41-85 (91)
378 1wf0_A TDP-43, TAR DNA-binding 98.5 9.8E-08 3.3E-12 53.5 4.1 51 1-58 31-81 (88)
379 1ufw_A Synaptojanin 2; RNP dom 98.4 3E-07 1E-11 51.6 4.6 44 1-53 50-93 (95)
380 1uw4_A UPF3X; nonsense mediate 98.4 2.9E-06 9.8E-11 47.6 8.2 77 67-143 2-85 (91)
381 3tht_A Alkylated DNA repair pr 98.3 1.1E-06 3.8E-11 61.1 5.8 46 2-53 47-97 (345)
382 1wey_A Calcipressin 1; structu 98.2 1.5E-05 5.2E-10 45.5 7.3 75 65-145 4-83 (104)
383 1whv_A Poly(A)-specific ribonu 98.1 3.8E-05 1.3E-09 43.2 8.1 56 64-128 14-69 (100)
384 1wwh_A Nucleoporin 35, nucleop 98.1 4.1E-05 1.4E-09 44.9 8.6 74 63-144 21-95 (119)
385 2l08_A Regulator of nonsense t 98.0 2.6E-05 8.9E-10 44.0 5.9 79 65-143 8-93 (97)
386 2dhx_A Poly (ADP-ribose) polym 98.0 0.00019 6.6E-09 40.8 9.2 72 65-145 7-83 (104)
387 3ctr_A Poly(A)-specific ribonu 97.8 3.1E-05 1.1E-09 43.7 4.4 54 67-129 7-60 (101)
388 3p3d_A Nucleoporin 53; structu 97.4 0.00042 1.4E-08 41.2 5.2 78 66-145 7-98 (132)
389 2l9w_A U4/U6 snRNA-associated- 97.3 0.00076 2.6E-08 38.8 5.2 43 2-50 53-95 (117)
390 1owx_A Lupus LA protein, SS-B, 97.1 0.00088 3E-08 39.5 4.6 46 1-52 45-93 (121)
391 2dhx_A Poly (ADP-ribose) polym 96.7 0.0038 1.3E-07 35.5 4.9 52 18-79 48-99 (104)
392 3pq1_A Poly(A) RNA polymerase; 96.7 0.0014 4.6E-08 47.4 3.7 55 66-126 53-107 (464)
393 3d45_A Poly(A)-specific ribonu 94.6 0.2 6.7E-06 36.9 7.9 55 66-129 440-494 (507)
394 1wey_A Calcipressin 1; structu 93.6 0.31 1.1E-05 27.7 5.8 37 18-54 47-83 (104)
395 3p3d_A Nucleoporin 53; structu 91.8 0.18 6.2E-06 30.0 3.3 37 16-53 61-97 (132)
396 1wwh_A Nucleoporin 35, nucleop 81.7 4.7 0.00016 23.5 5.1 37 16-53 58-95 (119)
397 4e8u_A Putative uncharacterize 77.7 10 0.00035 23.6 6.5 56 68-126 14-81 (172)
398 1uw4_A UPF3X; nonsense mediate 73.5 4.4 0.00015 22.4 3.3 29 16-44 44-72 (91)
399 2i9x_A Putative septation prot 70.5 5.8 0.0002 21.7 3.3 26 1-26 5-30 (87)
400 2ia9_A Putative septation prot 65.2 8.3 0.00028 21.7 3.3 26 1-26 5-30 (100)
401 2i9z_A Putative septation prot 64.1 9.1 0.00031 21.7 3.3 26 1-26 5-30 (105)
402 3lpe_A Putative transcription 58.0 10 0.00036 20.8 2.9 26 15-40 48-73 (92)
403 2g0c_A ATP-dependent RNA helic 56.6 5.6 0.00019 20.7 1.6 58 78-144 13-75 (76)
404 4eyt_A Telomerase associated p 54.7 25 0.00085 19.3 8.7 56 65-128 11-66 (129)
405 3h7h_B Transcription elongatio 53.6 12 0.0004 21.3 2.6 25 16-40 50-74 (106)
406 2exu_A Transcription initiatio 43.0 21 0.00073 22.8 2.9 25 16-40 148-172 (200)
407 2cu1_A Mitogen-activated prote 41.2 47 0.0016 18.6 4.1 51 71-129 21-72 (103)
408 2g1d_A 30S ribosomal protein S 37.8 14 0.00047 20.7 1.2 18 14-32 63-80 (98)
409 3p8b_B Transcription antitermi 37.2 31 0.0011 20.7 2.9 25 16-40 42-66 (152)
410 3fut_A Dimethyladenosine trans 35.1 60 0.002 21.6 4.2 29 67-96 111-139 (271)
411 2rf4_B DNA-directed RNA polyme 34.7 53 0.0018 17.8 3.1 30 62-91 15-44 (87)
412 3tqs_A Ribosomal RNA small sub 34.2 99 0.0034 20.3 5.7 27 69-95 99-125 (255)
413 2jrh_A Mitogen-activated prote 33.2 63 0.0021 17.7 5.1 65 73-146 19-84 (94)
414 2lfv_A Protein DAMX; cell divi 37.7 10 0.00034 21.6 0.0 61 66-130 25-86 (106)
415 1fme_A FSD-EY peptide; beta-BE 31.4 32 0.0011 13.7 1.6 12 79-90 14-25 (28)
416 2k5n_A Putative cold-shock pro 31.3 25 0.00084 18.4 1.5 11 16-26 13-23 (74)
417 2kcm_A Cold shock domain famil 29.5 28 0.00094 18.2 1.5 11 16-26 11-21 (74)
418 3cam_A Cold-shock domain famil 29.4 28 0.00096 17.7 1.5 10 16-25 12-21 (67)
419 1c9o_A CSPB, cold-shock protei 29.0 25 0.00087 17.8 1.3 10 16-25 12-21 (66)
420 3uzu_A Ribosomal RNA small sub 28.1 27 0.00093 23.4 1.7 29 67-95 115-143 (279)
421 3a0j_A Cold shock protein; OB- 27.7 28 0.00094 18.1 1.3 10 16-25 12-21 (73)
422 1g6p_A Cold shock protein TMCS 27.3 29 0.00098 17.6 1.3 10 16-25 11-20 (66)
423 1h95_A CSD, Y-box binding prot 27.2 31 0.0011 18.2 1.5 10 16-25 19-28 (79)
424 1igq_A Transcriptional repress 26.4 71 0.0024 16.1 2.6 22 4-26 21-42 (62)
425 2w7a_A LINE-1 ORF1P; RNA-bindi 25.9 93 0.0032 17.4 7.1 75 67-142 4-99 (100)
426 3i2z_B RNA chaperone, negative 25.5 32 0.0011 17.7 1.3 12 15-26 15-26 (71)
427 3ulj_A LIN28B, DNA-binding pro 25.1 36 0.0012 18.6 1.5 10 16-25 19-28 (90)
428 2q2k_A Hypothetical protein; p 25.0 17 0.00059 17.8 0.2 21 70-90 42-62 (70)
429 4aj5_1 SKA3, spindle and kinet 24.1 36 0.0012 19.1 1.4 11 81-91 91-101 (101)
430 1qyr_A KSGA, high level kasuga 22.6 76 0.0026 20.8 3.0 23 68-90 92-114 (252)
431 2yty_A Cold shock domain-conta 22.0 40 0.0014 18.2 1.3 10 17-26 28-37 (88)
432 3lyv_A Ribosome-associated fac 21.3 96 0.0033 15.9 2.7 20 4-26 40-59 (66)
433 2e7g_A Putative ribosome-bindi 21.1 85 0.0029 18.3 2.7 31 1-35 45-76 (129)
434 2ytx_A Cold shock domain-conta 21.0 43 0.0015 18.5 1.3 11 16-26 27-37 (97)
435 1wfq_A UNR protein; beta-barre 20.7 45 0.0015 18.1 1.3 9 17-25 28-36 (89)
436 2nn4_A Hypothetical protein YQ 20.5 41 0.0014 17.6 1.1 17 79-95 4-20 (72)
437 3ftd_A Dimethyladenosine trans 20.3 83 0.0028 20.5 2.8 23 68-90 97-119 (249)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=177.64 Aligned_cols=141 Identities=28% Similarity=0.648 Sum_probs=129.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCH
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTT 80 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~ 80 (148)
.|.+|++++++ +++++|||||+|.+.++|..|+..+++..+.|+++.+.++..... ....+..+|+|+|||..+++
T Consensus 26 ~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~---~~~~~~~~l~v~nl~~~~t~ 101 (166)
T 3md3_A 26 PIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ---SSSDDTFNLFVGDLNVNVDD 101 (166)
T ss_dssp CEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC---CCCTTCEEEEEESCCTTCCH
T ss_pred CeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC---CCCCCCceEEECCCCCCCCH
Confidence 47889999996 688999999999999999999999999999999999999876544 23446779999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 032066 81 ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 145 (148)
Q Consensus 81 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 145 (148)
++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|||..++|+.|+|.++++
T Consensus 102 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 102 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 99999999999999999999988899999999999999999999999999999999999999864
No 2
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.3e-33 Score=176.65 Aligned_cols=138 Identities=32% Similarity=0.537 Sum_probs=128.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCH
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTT 80 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~ 80 (148)
.|.+|++++++.+|+++|||||+|.+.++|..|+..+++..+.|+++.+.++.+... ....++|+|+|||..+++
T Consensus 29 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-----~~~~~~l~v~nl~~~~t~ 103 (168)
T 1b7f_A 29 PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE-----SIKDTNLYVTNLPRTITD 103 (168)
T ss_dssp CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS-----TTTTCEEEEESCCTTCCH
T ss_pred CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc-----cCCCCCEEEeCCCCCCCH
Confidence 378999999999999999999999999999999999999999999999999876543 235679999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEec
Q 032066 81 ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLA 143 (148)
Q Consensus 81 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~ 143 (148)
++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|||..++| ++|+|++|
T Consensus 104 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 104 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999998789999999999999999999999999999988 99999986
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.5e-32 Score=173.86 Aligned_cols=138 Identities=29% Similarity=0.551 Sum_probs=126.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCH
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTT 80 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~ 80 (148)
.|.++++++++.+|+++|||||+|.+.++|..|+..+++..+.|+++.+.++.+... .....+|+|+|||..+++
T Consensus 28 ~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-----~~~~~~l~v~nl~~~~t~ 102 (167)
T 1fxl_A 28 EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA-----SIRDANLYVSGLPKTMTQ 102 (167)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-----GGTTCEEEEESCCTTCCH
T ss_pred CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-----cCCCCcEEECCCCCcCCH
Confidence 378999999998999999999999999999999999999999999999999875432 235578999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE--EEEEec
Q 032066 81 ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA--MRVSLA 143 (148)
Q Consensus 81 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~--l~v~~~ 143 (148)
++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|||..++|+. |+|.||
T Consensus 103 ~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 103 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999999888999999999999999999999999999999964 888875
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.6e-32 Score=177.99 Aligned_cols=145 Identities=26% Similarity=0.424 Sum_probs=124.9
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCC-CCCCCCcceEEEcCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL-PLYAETDFKLFVGNLSWSVT 79 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~-~~~~~~~~~l~i~nlp~~~~ 79 (148)
.|.+|++++++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.+.+.++....... +......++|+|+|||++++
T Consensus 39 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 117 (196)
T 1l3k_A 39 TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTE 117 (196)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCC
T ss_pred CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCC
Confidence 478999999999999999999999999999999984 8999999999999987654332 22334568999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 032066 80 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147 (148)
Q Consensus 80 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 147 (148)
+++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|.+|+.. +|..++|+.|.|.++.++.
T Consensus 118 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 999999999999999999999988899999999999999999999995 8999999999999998764
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.7e-33 Score=184.15 Aligned_cols=147 Identities=22% Similarity=0.416 Sum_probs=128.9
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCC------CCCCCcceEEEcCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP------LYAETDFKLFVGNL 74 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~------~~~~~~~~l~i~nl 74 (148)
.|.+|++++++.+|+++|||||+|.+.++|.+|+..+++..+.|++|.|.++.......+ ......++|+|+||
T Consensus 54 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 133 (216)
T 2qfj_A 54 PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASV 133 (216)
T ss_dssp CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECC
T ss_pred CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCC
Confidence 478999999998999999999999999999999999999999999999988764432110 11235579999999
Q ss_pred CCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 032066 75 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147 (148)
Q Consensus 75 p~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 147 (148)
|.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|||..++|+.|.|.++.++.
T Consensus 134 p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 134 HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999999999999998889999999999999999999999999999999999999998763
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=6.2e-33 Score=182.38 Aligned_cols=141 Identities=27% Similarity=0.465 Sum_probs=126.9
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCH
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTT 80 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~ 80 (148)
.|++|+|++++.+|+++|||||+|.+.++|.+|+..+++..+.|+.+.+.++...... ......+|+|+|||+.+++
T Consensus 41 ~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~---~~~~~~~l~v~nl~~~~t~ 117 (213)
T 4f02_A 41 PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL---RKSGVGNIFIKNLDKSIDN 117 (213)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHH---HHHCTTEEEEESCCTTCCH
T ss_pred CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccc---cccccccceECCcccccHH
Confidence 4789999999999999999999999999999999999999999999999987644321 1123458999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 81 ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 81 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
++|+++|++||.|..+.++.+. +.++|+|||+|.+.++|++|+..|||..|+|+.|.|.++.++
T Consensus 118 ~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 118 KALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 9999999999999999999874 447999999999999999999999999999999999998765
No 7
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=7e-31 Score=179.21 Aligned_cols=144 Identities=21% Similarity=0.309 Sum_probs=131.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCC-C
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV-T 79 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~-~ 79 (148)
.|.++++++++.+|.++|||||+|.+.++|..|+..+++..+.|++|.|.++.+..... .....++|+|+|||.++ +
T Consensus 121 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~--~~~~~~~l~v~nlp~~~~~ 198 (284)
T 3smz_A 121 SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP--ALLHSRCLCVDRLPPGFND 198 (284)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT--TTTSCSEEEEECCCTTCCC
T ss_pred CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc--ccCCccEEEEecCCcccCC
Confidence 36789999999999999999999999999999999999999999999999987654432 23466799999999995 9
Q ss_pred HHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 032066 80 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147 (148)
Q Consensus 80 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 147 (148)
+++|+++|++||.|..+.+..++ ++.++|+|||+|.+.++|.+|+..|||..++|+.|+|.++.++.
T Consensus 199 ~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 199 VDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred HHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 99999999999999999999885 68899999999999999999999999999999999999998764
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=1.2e-32 Score=174.50 Aligned_cols=139 Identities=23% Similarity=0.511 Sum_probs=125.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCH
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTT 80 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~ 80 (148)
.|.+|++++++.+|+++|||||+|.+.++|..|+. ++..+.|+.+.+.++.+... .....+|+|+|||.++++
T Consensus 29 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~~~~~-----~~~~~~l~V~nlp~~~t~ 101 (167)
T 2cjk_A 29 TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAIPRDE-----QDKTGKIFVGGIGPDVRP 101 (167)
T ss_dssp CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECCCHHH-----HHHCEEEEEEEECTTCCH
T ss_pred CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccccchhh-----ccCCCeEEECCCCCCCCH
Confidence 47899999999999999999999999999999998 46789999999988754321 234568999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 032066 81 ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147 (148)
Q Consensus 81 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 147 (148)
++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+. ++|..++|+.|.|.++.++.
T Consensus 102 ~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 102 KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred HHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 9999999999999999999888889999999999999999999998 89999999999999998873
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=4.9e-31 Score=171.26 Aligned_cols=138 Identities=21% Similarity=0.438 Sum_probs=121.7
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCC---------------CCCCCCcceEEEcC
Q 032066 9 YDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL---------------PLYAETDFKLFVGN 73 (148)
Q Consensus 9 ~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~---------------~~~~~~~~~l~i~n 73 (148)
.+...++++|||||+|.+.++|++|+ .+++..+.|++|.|.++....... .......++|+|+|
T Consensus 43 ~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 121 (198)
T 2yh0_A 43 LAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGG 121 (198)
T ss_dssp EEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEEC
T ss_pred EEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeC
Confidence 33345678999999999999999999 799999999999999876543221 11124668999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 032066 74 LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147 (148)
Q Consensus 74 lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 147 (148)
||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|+..|||..++|+.|+|.++.++.
T Consensus 122 l~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 122 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999998889999999999999999999999999999999999999998764
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=5.5e-31 Score=167.58 Aligned_cols=126 Identities=23% Similarity=0.484 Sum_probs=115.7
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCC
Q 032066 13 TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGN 92 (148)
Q Consensus 13 ~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~ 92 (148)
.++++|||||+|.+.++|+.|+ .+++..+.|+++.+.++..... .....+|+|+|||.++++++|+++|++||.
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~-----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 120 (172)
T 2g4b_A 47 INQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQP-----LPGAHKLFIGGLPNYLNDDQVKELLTSFGP 120 (172)
T ss_dssp EETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCC-----CTTTTCEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred ecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCC-----CCCCCEEEEEcCCCcCCHHHHHHHHHhcCC
Confidence 4567899999999999999999 7999999999999998765432 234679999999999999999999999999
Q ss_pred eeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 93 VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 93 v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
|..+.+..++.++.++|+|||+|.+.++|.+|+..|||..++|+.|.|++|.
T Consensus 121 v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 121 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999998889999999999999999999999999999999999999974
No 11
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=6.8e-31 Score=179.90 Aligned_cols=144 Identities=22% Similarity=0.306 Sum_probs=120.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCC--CCCCCcceEEEcCCCCC-
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP--LYAETDFKLFVGNLSWS- 77 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~--~~~~~~~~l~i~nlp~~- 77 (148)
.|.+|++++++. |.++|||||+|.+.++|..|+..+++..+.|++|.|.++.+...... ......++|+|+|||..
T Consensus 144 ~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 222 (292)
T 2ghp_A 144 VALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTEL 222 (292)
T ss_dssp CCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTT
T ss_pred CeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCccc
Confidence 377899999864 88999999999999999999999999999999999999876554332 24456789999999999
Q ss_pred CCHHHHHHHHhhcCCeeEEEEEEcCC-CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 78 VTTESLTQAFQEYGNVVGARVLYDGE-SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 78 ~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
+++++|+++|++||.|..+.++.+.. ++.++|+|||+|.+.++|.+|+ .|||..++|+.|.|.++.++
T Consensus 223 ~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 223 LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999999988755 4889999999999999999999 99999999999999999886
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.3e-30 Score=166.16 Aligned_cols=139 Identities=28% Similarity=0.434 Sum_probs=122.6
Q ss_pred CcceeEeeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCeec---CcEEEEeecCCCCCCCCCCCCCcceEEEcCCC
Q 032066 1 MLSKLTVLYDRETG--RSRGFAFVTMSTVEDCNAVIENLDGREYL---GRILRVNFSDKPKPKLPLYAETDFKLFVGNLS 75 (148)
Q Consensus 1 ~i~~i~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp 75 (148)
.|.+|++++++.+| +++|||||+|.+.++|+.|+..+++..+. +..+.+.++...... ....++|+|+|||
T Consensus 29 ~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~v~nl~ 104 (175)
T 3nmr_A 29 AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN----AVEDRKLFIGMIS 104 (175)
T ss_dssp CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS----CGGGSEEEEESCC
T ss_pred CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc----cCCCCeEEEcCCC
Confidence 47899999998877 89999999999999999999999998775 677888876544332 3356799999999
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC---CeEEEEEecc
Q 032066 76 WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE---GRAMRVSLAQ 144 (148)
Q Consensus 76 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~---g~~l~v~~~~ 144 (148)
+++++++|+++|++||.|..+.++.++ ++.++|+|||+|.+.++|.+|+..|||..+. |++|+|.|++
T Consensus 105 ~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 105 KKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999999999999999884 5889999999999999999999999998776 4999999974
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=5.8e-31 Score=167.98 Aligned_cols=131 Identities=24% Similarity=0.476 Sum_probs=116.7
Q ss_pred eeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHH
Q 032066 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQA 86 (148)
Q Consensus 7 ~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~~~l~~~ 86 (148)
++++..+|.++|||||+|.+.++|++|++ +++..+.|++|.|.++...... .....++|+|+|||..+++++|+++
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~ 119 (175)
T 1fje_B 44 AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSK---KVRAARTLLAKNLSFNITEDELKEV 119 (175)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCS---TTGGGGEEEEESCCSSCCHHHHHHH
T ss_pred EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCcccc---ccccCCEEEEeCCCCCCCHHHHHHH
Confidence 45555688999999999999999999995 9999999999999998765432 3446789999999999999999999
Q ss_pred HhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 87 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 87 f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
|++||.|..+ ..++.++|+|||+|.+.++|.+|+..|||..++|+.|+|+++.++
T Consensus 120 F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 120 FEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999987655 466788999999999999999999999999999999999999886
No 14
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.97 E-value=1.3e-29 Score=159.41 Aligned_cols=142 Identities=20% Similarity=0.363 Sum_probs=115.4
Q ss_pred eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEE-------eecC-CCCCCCCCCCCCcceEEEcCCC
Q 032066 4 KLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-------NFSD-KPKPKLPLYAETDFKLFVGNLS 75 (148)
Q Consensus 4 ~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v-------~~~~-~~~~~~~~~~~~~~~l~i~nlp 75 (148)
+++++++.. +++|||||+|.+.++|++|+..+++....+..... .... .............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 578888864 69999999999999999999877653222222221 1111 1122223334567899999999
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 032066 76 WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147 (148)
Q Consensus 76 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 147 (148)
+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|||..++|+.|+|.++.+++
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999988889999999999999999999999999999999999999998764
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=6.5e-29 Score=169.31 Aligned_cols=135 Identities=19% Similarity=0.337 Sum_probs=116.5
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC-----------------------
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK----------------------- 58 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~----------------------- 58 (148)
|.+|++++ +|+++|||||+|.+.++|..|+..+++..+.|+.|.|.++......
T Consensus 40 i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (282)
T 3pgw_A 40 ILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQ 116 (282)
T ss_pred eEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhcccc
Confidence 66777765 7789999999999999999999999999999999999987543310
Q ss_pred --------------------------------------------------------------------------------
Q 032066 59 -------------------------------------------------------------------------------- 58 (148)
Q Consensus 59 -------------------------------------------------------------------------------- 58 (148)
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (282)
T 3pgw_A 117 ETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMP 196 (282)
T ss_pred chhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccC
Confidence
Q ss_pred ---CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-
Q 032066 59 ---LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE- 134 (148)
Q Consensus 59 ---~~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~- 134 (148)
........++|||+|||..+++++|+++|++||.|..+.+..++ +|+|||+|.+.++|.+|+..|||..++
T Consensus 197 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~ 271 (282)
T 3pgw_A 197 PAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQ 271 (282)
T ss_pred ccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCC
Confidence 00112245789999999999999999999999999999988552 579999999999999999999999999
Q ss_pred CeEEEEEecc
Q 032066 135 GRAMRVSLAQ 144 (148)
Q Consensus 135 g~~l~v~~~~ 144 (148)
|+.|+|.|++
T Consensus 272 g~~l~v~~ak 281 (282)
T 3pgw_A 272 NNAMKISFAK 281 (282)
T ss_pred CCEEEEEEec
Confidence 9999999986
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=4.1e-29 Score=163.08 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=112.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCC--------------------
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP-------------------- 60 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~-------------------- 60 (148)
.|.+|+++++ .+|||||+|.+.++|+.|++.||+..+.|++|.|.++........
T Consensus 31 ~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 105 (205)
T 3tyt_A 31 NVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRN 105 (205)
T ss_dssp CEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTT
T ss_pred CeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCcc
Confidence 4778888876 369999999999999999999999999999999999864321000
Q ss_pred ------------CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCe--eEEEEEEcCCCCCceeEEEEEecCHHHHHHHHH
Q 032066 61 ------------LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNV--VGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126 (148)
Q Consensus 61 ------------~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v--~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 126 (148)
....+..+|||+|||+++++++|+++|++||.| ..+.+..+. +..+|+|||+|.+.++|.+|+.
T Consensus 106 ~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 106 NRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp CSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHH
T ss_pred ccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHH
Confidence 001245689999999999999999999999998 788877553 4456999999999999999999
Q ss_pred HhCCceeCCe----EEEEEec
Q 032066 127 SLNGVELEGR----AMRVSLA 143 (148)
Q Consensus 127 ~l~~~~i~g~----~l~v~~~ 143 (148)
.|||..+.|. ++.|++|
T Consensus 184 ~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 184 FLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHTTCEECCSSSSSCEECEEE
T ss_pred HhCCCCccCCCCCcceEEEec
Confidence 9999999886 5777665
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=3.6e-28 Score=165.80 Aligned_cols=122 Identities=29% Similarity=0.426 Sum_probs=114.8
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCe
Q 032066 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNV 93 (148)
Q Consensus 14 ~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v 93 (148)
+.++|||||+|.+.++|..|+..+++..+.|+++.+.++. ..++|+|+|||+++++++|+++|++||.|
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i 122 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-----------TDALLCVANLPPSLTQQQFEELVRPFGSL 122 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-----------CSCEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCe
Confidence 5678999999999999999999999999999999999854 34689999999999999999999999999
Q ss_pred eEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 94 VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
..+.++.++.++.++|+|||+|.+.++|..|+..|+|..++|+.|.|.++.++
T Consensus 123 ~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 123 ERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred eEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 99999999888999999999999999999999999999999999999998765
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2e-28 Score=162.49 Aligned_cols=136 Identities=22% Similarity=0.382 Sum_probs=117.3
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCC--------------------
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP-------------------- 60 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~-------------------- 60 (148)
.|.+|++++++ +|||||+|.+.++|++|++.+++..+.|++|.|.++.......+
T Consensus 61 ~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (229)
T 2adc_A 61 DVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHR 135 (229)
T ss_dssp CEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCC
T ss_pred CeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccc
Confidence 37788998875 78999999999999999999999999999999998865421110
Q ss_pred ----------CCCCCcceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 032066 61 ----------LYAETDFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129 (148)
Q Consensus 61 ----------~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 129 (148)
....+.++|+|+|||..+++++|+++|++|| .|..+.+... .+|+|||+|.+.++|.+|+..||
T Consensus 136 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~ 210 (229)
T 2adc_A 136 FKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH 210 (229)
T ss_dssp CCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHT
T ss_pred cCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHC
Confidence 0122468899999999999999999999999 9999988642 36799999999999999999999
Q ss_pred CceeC-CeEEEEEeccCC
Q 032066 130 GVELE-GRAMRVSLAQGR 146 (148)
Q Consensus 130 ~~~i~-g~~l~v~~~~~~ 146 (148)
|..++ |+.|+|.|++++
T Consensus 211 g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 211 NHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TCBSSSSCBCEEEECSSC
T ss_pred CCccCCCCeEEEEEecCC
Confidence 99999 999999999875
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1.1e-28 Score=160.34 Aligned_cols=136 Identities=22% Similarity=0.382 Sum_probs=117.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCC--------------------
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP-------------------- 60 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~-------------------- 60 (148)
.|.+|++++++ +|||||+|.+.++|+.|+..+++..+.|++|.|.++.......+
T Consensus 30 ~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r 104 (198)
T 1qm9_A 30 DVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHR 104 (198)
T ss_dssp CCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTS
T ss_pred CEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhh
Confidence 36788888875 68999999999999999999999999999999998865421110
Q ss_pred ----------CCCCCcceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 032066 61 ----------LYAETDFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129 (148)
Q Consensus 61 ----------~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 129 (148)
....+.++|+|+|||..+++++|+++|++|| .|..+.+..+ .+|+|||+|.+.++|.+|+..||
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~ 179 (198)
T 1qm9_A 105 FKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH 179 (198)
T ss_dssp SSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHT
T ss_pred ccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhc
Confidence 0123478899999999999999999999999 9999988643 26899999999999999999999
Q ss_pred CceeC-CeEEEEEeccCC
Q 032066 130 GVELE-GRAMRVSLAQGR 146 (148)
Q Consensus 130 ~~~i~-g~~l~v~~~~~~ 146 (148)
|..++ |+.|+|.|++++
T Consensus 180 g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 180 NHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSCCSSCCSCCEEEECCC
T ss_pred CCccCCCCeEEEEeeccc
Confidence 99999 999999999875
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.8e-27 Score=162.90 Aligned_cols=130 Identities=17% Similarity=0.217 Sum_probs=114.3
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCH
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTT 80 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~ 80 (148)
.|.+|++++++.+ ++|||||+|.+.++|..|+. +++..+.|+++.+.++ ..++|+|+|||+.+++
T Consensus 67 ~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~------------~~~~l~v~nlp~~~t~ 131 (292)
T 2ghp_A 67 PIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL------------TECTLWMTNFPPSYTQ 131 (292)
T ss_dssp CEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC------------CSCEEEEECCCTTCCH
T ss_pred CeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC------------CCCEEEEECCCCCCCH
Confidence 4788999998633 58999999999999999995 9999999999999986 3568999999999999
Q ss_pred HHHHHHHhhcC-CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 81 ESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 81 ~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
++|+++|.+|| .|..+.++.++. +.++|+|||+|.+.++|..|+..|+|..++|+.|.|.++.++
T Consensus 132 ~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 132 RNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp HHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 99999999999 999999988754 678999999999999999999999999999999999998765
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.95 E-value=1.9e-27 Score=148.37 Aligned_cols=129 Identities=22% Similarity=0.295 Sum_probs=113.6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHh-CCCeecCcEEEEeecCCCC-----------CCCCCCCCCcceEEEcCCCCCCCH
Q 032066 13 TGRSRGFAFVTMSTVEDCNAVIENL-DGREYLGRILRVNFSDKPK-----------PKLPLYAETDFKLFVGNLSWSVTT 80 (148)
Q Consensus 13 ~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~i~v~~~~~~~-----------~~~~~~~~~~~~l~i~nlp~~~~~ 80 (148)
....+|+++++|.+.++|++|+..+ ++..+.| ++.+.++.... ..........++|||+|||+++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3478999999999999999999999 9999999 99998775421 122334456789999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 032066 81 ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147 (148)
Q Consensus 81 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 147 (148)
++|+++|++||.|..+.++.+ ++|+|||+|.+.++|..|+..|||..++|+.|+|+++.+++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999765 58899999999999999999999999999999999998875
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=9.1e-27 Score=157.23 Aligned_cols=127 Identities=33% Similarity=0.438 Sum_probs=114.0
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCHH
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTE 81 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~~ 81 (148)
|.+|++.+ ++|||||+|.+.++|..|+..+++..+.|++|.|.++.+ ..+|+|+|||+.++++
T Consensus 49 i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-----------~~~l~v~nl~~~~t~~ 111 (261)
T 3sde_A 49 PSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-----------GAALTVKNLSPVVSNE 111 (261)
T ss_dssp CSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-----------SSEEEEESCCTTCCHH
T ss_pred EEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-----------CCcccccCCCCCCCHH
Confidence 66777754 469999999999999999999999999999999999863 4589999999999999
Q ss_pred HHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC-CceeC---CeEEEEEeccCC
Q 032066 82 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN-GVELE---GRAMRVSLAQGR 146 (148)
Q Consensus 82 ~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~-~~~i~---g~~l~v~~~~~~ 146 (148)
+|+++|.+||.|..+.++.+ .++.++|+|||+|.+.++|..|+..|| +..+. |++|.|.++.+.
T Consensus 112 ~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 112 LLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999999999999999998 678899999999999999999999995 55554 899999998654
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=128.86 Aligned_cols=81 Identities=35% Similarity=0.588 Sum_probs=78.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
..++|||+|||+++++++|+++|++||.|..+.+++++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|++++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 032066 145 G 145 (148)
Q Consensus 145 ~ 145 (148)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 24
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.92 E-value=5.3e-25 Score=134.83 Aligned_cols=125 Identities=26% Similarity=0.449 Sum_probs=82.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 032066 17 RGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA 96 (148)
Q Consensus 17 ~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~ 96 (148)
.-|+|+++.+...+..|+..+++....+.. ...+. ..+......++|||+|||+++++++|+++|++||.|..+
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~-----~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 77 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYG-----RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDV 77 (135)
T ss_dssp --------------------------------CCSC-----CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEE
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCC-CCCcC-----CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE
Confidence 357899999999999999988887655543 11221 123334567899999999999999999999999999999
Q ss_pred EEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 032066 97 RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147 (148)
Q Consensus 97 ~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 147 (148)
.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|+++++++
T Consensus 78 ~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 78 YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp ECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999888888999999999999999999999999999999999999998763
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=124.46 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=76.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC-CceeCCeEEEEEec
Q 032066 66 DFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN-GVELEGRAMRVSLA 143 (148)
Q Consensus 66 ~~~l~i~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~-~~~i~g~~l~v~~~ 143 (148)
+++|+|+|||+++++++|+++|++|| .|..+.+++++.++.++|||||+|.+.++|++|+..++ +..++|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 79999999998999999999999999999999999874 57899999999999
Q ss_pred cCCC
Q 032066 144 QGRR 147 (148)
Q Consensus 144 ~~~~ 147 (148)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8764
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=124.46 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
.++++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 032066 144 QGR 146 (148)
Q Consensus 144 ~~~ 146 (148)
..+
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 27
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.91 E-value=2.2e-23 Score=131.78 Aligned_cols=125 Identities=23% Similarity=0.358 Sum_probs=79.7
Q ss_pred EEeCCHHHHHHHHHHhCCCeec--CcEEEEeecCCC---------------CCCCCCCCCCcceEEEcCCCCCCCHHHHH
Q 032066 22 VTMSTVEDCNAVIENLDGREYL--GRILRVNFSDKP---------------KPKLPLYAETDFKLFVGNLSWSVTTESLT 84 (148)
Q Consensus 22 v~f~~~~~a~~a~~~l~~~~~~--~~~i~v~~~~~~---------------~~~~~~~~~~~~~l~i~nlp~~~~~~~l~ 84 (148)
.+|.+.++|..|+..+++.... |+.....+.... ....+....+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999988876554 444444332110 11112234456789999999999999999
Q ss_pred HHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 85 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 85 ~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
++|.+||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++.++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 99999999999999999889999999999999999999999999999999999999998765
No 28
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.91 E-value=3.5e-23 Score=117.68 Aligned_cols=83 Identities=37% Similarity=0.685 Sum_probs=76.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|||..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35679999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCC
Q 032066 144 QGR 146 (148)
Q Consensus 144 ~~~ 146 (148)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 29
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.91 E-value=5.1e-23 Score=116.02 Aligned_cols=81 Identities=36% Similarity=0.775 Sum_probs=78.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
.+|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|||..++|+.|+|+++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999887
Q ss_pred C
Q 032066 147 R 147 (148)
Q Consensus 147 ~ 147 (148)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=9.5e-23 Score=118.78 Aligned_cols=86 Identities=21% Similarity=0.454 Sum_probs=80.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
....+.++|||+|||+++++++|+++|.+||.|..+.+..++ ++.++|+|||+|.+.++|++|+..|||..++|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 334567899999999999999999999999999999999986 8889999999999999999999999999999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
++++++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9998875
No 31
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.90 E-value=6.7e-23 Score=120.96 Aligned_cols=89 Identities=35% Similarity=0.676 Sum_probs=83.2
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 032066 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139 (148)
Q Consensus 60 ~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 139 (148)
+....++++|||+|||.++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|+|..++|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455778999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 032066 140 VSLAQGRRS 148 (148)
Q Consensus 140 v~~~~~~~~ 148 (148)
|+++.++.+
T Consensus 100 V~~a~~k~d 108 (108)
T 2jrs_A 100 VGHVTERTD 108 (108)
T ss_dssp EECSCSSCC
T ss_pred EEEcccCCC
Confidence 999998864
No 32
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.6e-22 Score=116.80 Aligned_cols=85 Identities=34% Similarity=0.545 Sum_probs=80.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
....+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccC
Q 032066 141 SLAQG 145 (148)
Q Consensus 141 ~~~~~ 145 (148)
+++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.4e-22 Score=118.66 Aligned_cols=86 Identities=20% Similarity=0.403 Sum_probs=81.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
...+.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998764
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=120.72 Aligned_cols=82 Identities=21% Similarity=0.424 Sum_probs=75.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCc----eeCCeE
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGN--VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV----ELEGRA 137 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~----~i~g~~ 137 (148)
..-.+|||+|||+++++++|+++|++||. +..+++++++.++.++|||||+|.+.++|++|++.|||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34568999999999999999999999995 678999999999999999999999999999999999986 599999
Q ss_pred EEEEeccC
Q 032066 138 MRVSLAQG 145 (148)
Q Consensus 138 l~v~~~~~ 145 (148)
|.|++|++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 35
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.90 E-value=7e-23 Score=118.52 Aligned_cols=83 Identities=22% Similarity=0.521 Sum_probs=78.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
++++|||+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|+.|+..|||..++|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCC
Q 032066 145 GRR 147 (148)
Q Consensus 145 ~~~ 147 (148)
+++
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.90 E-value=8.2e-23 Score=115.65 Aligned_cols=82 Identities=33% Similarity=0.571 Sum_probs=77.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|||..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34677999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cc
Q 032066 143 AQ 144 (148)
Q Consensus 143 ~~ 144 (148)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=3.5e-22 Score=119.18 Aligned_cols=87 Identities=37% Similarity=0.643 Sum_probs=81.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
......++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
.++.++.
T Consensus 90 ~~a~~~~ 96 (115)
T 2dgo_A 90 NWATRKP 96 (115)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9997763
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=7.5e-23 Score=118.14 Aligned_cols=84 Identities=37% Similarity=0.676 Sum_probs=79.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
.++++|||+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45679999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 032066 144 QGRR 147 (148)
Q Consensus 144 ~~~~ 147 (148)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8774
No 39
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=2.4e-22 Score=119.93 Aligned_cols=86 Identities=28% Similarity=0.526 Sum_probs=80.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||.++++++|+++|.+||.|..+.++.++.++.++++|||+|.+.++|++|+..||+..++|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34466899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
+++++.
T Consensus 101 ~a~~~~ 106 (115)
T 2cpz_A 101 LKRSKN 106 (115)
T ss_dssp CCCCSC
T ss_pred EcCCCC
Confidence 998764
No 40
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=1.2e-22 Score=118.17 Aligned_cols=85 Identities=24% Similarity=0.432 Sum_probs=80.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|||..++|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+.++.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98764
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.2e-22 Score=119.32 Aligned_cols=87 Identities=26% Similarity=0.458 Sum_probs=81.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
......++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..||+..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34457789999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
+++.++.
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9998764
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=117.08 Aligned_cols=85 Identities=25% Similarity=0.414 Sum_probs=79.5
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCc
Q 032066 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131 (148)
Q Consensus 60 ~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~ 131 (148)
..+....++|||+|||.++++++|+++|++||.|.. +.++.++.++.++|+|||+|.+.++|++|+..|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445567789999999999999999999999999999 999999888999999999999999999999999999
Q ss_pred eeCCeEEEEEecc
Q 032066 132 ELEGRAMRVSLAQ 144 (148)
Q Consensus 132 ~i~g~~l~v~~~~ 144 (148)
.++|+.|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 43
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=9e-23 Score=118.03 Aligned_cols=84 Identities=26% Similarity=0.536 Sum_probs=79.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
.+.++|||+|||+++++++|+++|++||.|..+ .++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999 9998888899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98764
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.9e-22 Score=118.73 Aligned_cols=86 Identities=30% Similarity=0.484 Sum_probs=80.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|+.|+..|||..++|+.|.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998764
No 45
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.8e-22 Score=117.14 Aligned_cols=87 Identities=22% Similarity=0.342 Sum_probs=80.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999888888888889999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 032066 142 LAQGRRS 148 (148)
Q Consensus 142 ~~~~~~~ 148 (148)
++..+.+
T Consensus 91 ~a~~~~s 97 (98)
T 2cqp_A 91 LGSGPSS 97 (98)
T ss_dssp ESSCSSC
T ss_pred EcCCCCC
Confidence 9987754
No 46
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=5.3e-22 Score=116.21 Aligned_cols=87 Identities=24% Similarity=0.551 Sum_probs=80.3
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 032066 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138 (148)
Q Consensus 59 ~~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 138 (148)
.+.+..+.++|||+|||+++++++|+++|.+|| |..+.++.++.++.++|+|||+|.+.++|+.|+ .||+..++|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 344556788999999999999999999999996 999999999888999999999999999999999 899999999999
Q ss_pred EEEeccCCC
Q 032066 139 RVSLAQGRR 147 (148)
Q Consensus 139 ~v~~~~~~~ 147 (148)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999998764
No 47
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=117.17 Aligned_cols=85 Identities=25% Similarity=0.543 Sum_probs=79.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||.++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|++|+. +++..++|+.|+|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999 99999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 998764
No 48
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=115.39 Aligned_cols=83 Identities=28% Similarity=0.541 Sum_probs=78.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++++|||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ecc
Q 032066 142 LAQ 144 (148)
Q Consensus 142 ~~~ 144 (148)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=2.5e-22 Score=119.81 Aligned_cols=81 Identities=32% Similarity=0.604 Sum_probs=74.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
...+|||+|||+++++++|+++|++||.|..+.++.+. +.++|||||+|.+.++|++|+..|+|..++|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999884 4478999999999999999999999999999999999987
Q ss_pred CCC
Q 032066 145 GRR 147 (148)
Q Consensus 145 ~~~ 147 (148)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 50
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.89 E-value=2.1e-22 Score=119.23 Aligned_cols=86 Identities=26% Similarity=0.460 Sum_probs=80.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
...+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|||..++|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997764
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=3.6e-22 Score=118.41 Aligned_cols=87 Identities=26% Similarity=0.497 Sum_probs=81.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC------CceeC
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN------GVELE 134 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~------~~~i~ 134 (148)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|++|+..+| +..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344567899999999999999999999999999999999998889999999999999999999999999 99999
Q ss_pred CeEEEEEeccCCC
Q 032066 135 GRAMRVSLAQGRR 147 (148)
Q Consensus 135 g~~l~v~~~~~~~ 147 (148)
|+.|+|+++.++.
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999998764
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.7e-22 Score=118.15 Aligned_cols=85 Identities=33% Similarity=0.556 Sum_probs=80.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|+.|+..||+..++|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 44678999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+.+++
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=3e-22 Score=117.99 Aligned_cols=88 Identities=24% Similarity=0.448 Sum_probs=81.1
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEc-CCCCCceeEEEEEecCHHHHHHHHHHh-CCceeCCeE
Q 032066 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD-GESGRSRGYGFVCYSTKAEMETALESL-NGVELEGRA 137 (148)
Q Consensus 60 ~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~~~~~fv~f~~~~~a~~a~~~l-~~~~i~g~~ 137 (148)
.......++|||+|||..+++++|+++|.+||.|..+.++.+ +.++.++|+|||+|.+.++|++|+..| |+..++|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344557789999999999999999999999999999999988 678899999999999999999999999 999999999
Q ss_pred EEEEeccCCC
Q 032066 138 MRVSLAQGRR 147 (148)
Q Consensus 138 l~v~~~~~~~ 147 (148)
|+|+++.++.
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998764
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=3.1e-22 Score=116.37 Aligned_cols=85 Identities=24% Similarity=0.426 Sum_probs=80.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE----
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVV-GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA---- 137 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~---- 137 (148)
..++++|||+|||+++++++|+++|++||.|. .+.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 9999999888999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 032066 138 MRVSLAQGRR 147 (148)
Q Consensus 138 l~v~~~~~~~ 147 (148)
|+|.++++.+
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998753
No 55
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.6e-22 Score=116.49 Aligned_cols=83 Identities=27% Similarity=0.466 Sum_probs=77.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCC---CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE---SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
++++|||+|||+++++++|+++|++||.|..+.+..++. ++.++++|||+|.+.++|+.|+..|||..++|+.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567899999999999999999999999999999998765 55889999999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 998764
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.8e-22 Score=117.96 Aligned_cols=86 Identities=37% Similarity=0.648 Sum_probs=80.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++++|||+|.+.++|+.|+..||+..++|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467899999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987764
No 57
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.89 E-value=3.6e-23 Score=118.37 Aligned_cols=81 Identities=26% Similarity=0.506 Sum_probs=72.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
.+|||+|||+++++++|+++|++|| .|..+.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999999988
Q ss_pred CCC
Q 032066 145 GRR 147 (148)
Q Consensus 145 ~~~ 147 (148)
++.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 763
No 58
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=118.59 Aligned_cols=86 Identities=28% Similarity=0.529 Sum_probs=80.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
...+.++|||+|||.++++++|+++|.+||.|..+.+..++.++.++|+|||+|.+.++|++|+..|||..++|+.|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++++++
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998653
No 59
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.88 E-value=4e-22 Score=113.75 Aligned_cols=82 Identities=28% Similarity=0.536 Sum_probs=77.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
..++|||+|||+++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+ .+||..++|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3568999999999999999999999999999999999888999999999999999999999 899999999999999998
Q ss_pred CCC
Q 032066 145 GRR 147 (148)
Q Consensus 145 ~~~ 147 (148)
+++
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 764
No 60
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=6.9e-22 Score=115.71 Aligned_cols=85 Identities=33% Similarity=0.636 Sum_probs=78.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
....+.++|||+|||+++++++|+++|.+||.|..+.+..+ ++.++++|||+|.+.++|+.|+..|||..++|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34557789999999999999999999999999999999887 7889999999999999999999999999999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
.++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2d9p_A 88 ALAQRKE 94 (103)
T ss_dssp EECSSCC
T ss_pred EEecccc
Confidence 9998764
No 61
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=114.27 Aligned_cols=83 Identities=22% Similarity=0.448 Sum_probs=77.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCC-ceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR-SRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
.+++|||+|||.++++++|+++|++||.|..+.++.+..++. ++|+|||+|.+.++|+.|+..|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999998876655 8899999999999999999999999999999999999
Q ss_pred cCCC
Q 032066 144 QGRR 147 (148)
Q Consensus 144 ~~~~ 147 (148)
.+++
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.88 E-value=2e-22 Score=122.43 Aligned_cols=87 Identities=33% Similarity=0.568 Sum_probs=81.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
....+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
+++.+++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998775
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.4e-22 Score=116.04 Aligned_cols=86 Identities=27% Similarity=0.489 Sum_probs=79.3
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCC-CCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 032066 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES-GRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138 (148)
Q Consensus 60 ~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 138 (148)
+.+..+.++|||+|||+++++++|+++|.+|| |..+.++.++.+ +.++|+|||+|.+.++|++|+ .||+..++|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34455778999999999999999999999999 999999998877 889999999999999999999 899999999999
Q ss_pred EEEeccCCC
Q 032066 139 RVSLAQGRR 147 (148)
Q Consensus 139 ~v~~~~~~~ 147 (148)
+|+++.++.
T Consensus 87 ~V~~a~~~~ 95 (104)
T 1wi8_A 87 RVDVADQAQ 95 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999998764
No 64
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.88 E-value=5.6e-23 Score=119.74 Aligned_cols=82 Identities=21% Similarity=0.339 Sum_probs=78.2
Q ss_pred CcceEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-eE
Q 032066 65 TDFKLFVGNLSW------SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG-RA 137 (148)
Q Consensus 65 ~~~~l~i~nlp~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g-~~ 137 (148)
.+++|||+|||+ ++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999989999999999999999999999999999999 99
Q ss_pred EEEEeccCC
Q 032066 138 MRVSLAQGR 146 (148)
Q Consensus 138 l~v~~~~~~ 146 (148)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998764
No 65
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=1.2e-21 Score=115.03 Aligned_cols=84 Identities=30% Similarity=0.474 Sum_probs=78.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC---eEEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG---RAMR 139 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g---~~l~ 139 (148)
...+++|||+|||+++++++|+++|++||.|..+.+..++ ++.++|+|||+|.+.++|++|+..|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3467899999999999999999999999999999999986 68899999999999999999999999999988 9999
Q ss_pred EEeccCCC
Q 032066 140 VSLAQGRR 147 (148)
Q Consensus 140 v~~~~~~~ 147 (148)
|.++.++.
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998764
No 66
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=1.5e-21 Score=120.07 Aligned_cols=86 Identities=28% Similarity=0.520 Sum_probs=80.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34466899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998763
No 67
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.88 E-value=8.4e-22 Score=113.71 Aligned_cols=83 Identities=34% Similarity=0.572 Sum_probs=77.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||+.+++++|+++|++||.|..+.++.++. +.++|+|||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999865 8899999999999999999999999999999999999
Q ss_pred eccC
Q 032066 142 LAQG 145 (148)
Q Consensus 142 ~~~~ 145 (148)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 68
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=5.3e-22 Score=116.78 Aligned_cols=87 Identities=23% Similarity=0.434 Sum_probs=80.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCeE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL---EGRA 137 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i---~g~~ 137 (148)
......++|||+|||.++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3445678999999999999999999999999999999999888899999999999999999999999999988 8999
Q ss_pred EEEEeccCCC
Q 032066 138 MRVSLAQGRR 147 (148)
Q Consensus 138 l~v~~~~~~~ 147 (148)
|+|+++.+++
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999997764
No 69
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=113.25 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=75.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 138 (148)
....++|||+|||+++++++|+ ++|++||.|..+.++.++.+ +++|||+|.+.++|++|+..|||..++|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456799999999999999999 99999999999999887654 7899999999999999999999999999999
Q ss_pred EEEeccCCC
Q 032066 139 RVSLAQGRR 147 (148)
Q Consensus 139 ~v~~~~~~~ 147 (148)
+|++++++.
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999998764
No 70
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3e-21 Score=112.97 Aligned_cols=85 Identities=28% Similarity=0.563 Sum_probs=77.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
......++|||+|||+++++++|+++|.+||.|..+.++.+.. .++++|||+|.+.++|++|+..||+..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4455678999999999999999999999999999999987754 37899999999999999999999999999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
+++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cq3_A 88 NNATARV 94 (103)
T ss_dssp EECCSSC
T ss_pred EEcccCC
Confidence 9998764
No 71
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.5e-21 Score=112.71 Aligned_cols=85 Identities=26% Similarity=0.390 Sum_probs=77.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
......++|||+|||+.+++++|+++|++||.|..+.++.++.+ ++++|||+|.+.++|++|+..||+..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34456789999999999999999999999999999999887443 6899999999999999999999999999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
+++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqi_A 88 NWATTPS 94 (103)
T ss_dssp EECCCTT
T ss_pred EECCCCc
Confidence 9998764
No 72
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.88 E-value=1.6e-21 Score=114.86 Aligned_cols=83 Identities=39% Similarity=0.580 Sum_probs=77.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
...+.++|||+|||+.+++++|+++|.+||.|..+.++.++ ++.++|+|||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999997 88899999999999999999999999999999999999
Q ss_pred eccC
Q 032066 142 LAQG 145 (148)
Q Consensus 142 ~~~~ 145 (148)
++.+
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9863
No 73
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.3e-22 Score=117.92 Aligned_cols=84 Identities=39% Similarity=0.706 Sum_probs=79.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
...++|||+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|+.|+..|||..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35678999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 032066 144 QGRR 147 (148)
Q Consensus 144 ~~~~ 147 (148)
.++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8764
No 74
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.88 E-value=9.9e-22 Score=112.76 Aligned_cols=83 Identities=30% Similarity=0.526 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|||.++++++|+++|++||.|..+.+.. +++.++++|||+|.+.++|+.|+..|||..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999886 3678899999999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
++++.
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98764
No 75
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-21 Score=116.61 Aligned_cols=86 Identities=27% Similarity=0.451 Sum_probs=79.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVV--------GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 133 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i 133 (148)
.....++|||+|||+++++++|+++|.+||.|. .+.++.++.++.++|+|||+|.+.++|++|+..|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 689998888899999999999999999999999999999
Q ss_pred CCeEEEEEeccCCC
Q 032066 134 EGRAMRVSLAQGRR 147 (148)
Q Consensus 134 ~g~~l~v~~~~~~~ 147 (148)
+|+.|+|++++++.
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998764
No 76
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=7.7e-22 Score=117.81 Aligned_cols=84 Identities=27% Similarity=0.521 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
...+++|||+|||.++++++|+++|++||.|..+.+..+. ++.++|+|||+|.+.++|+.|+..|||..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999886 888999999999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
++++.
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 97653
No 77
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.88 E-value=2.2e-21 Score=110.25 Aligned_cols=80 Identities=35% Similarity=0.680 Sum_probs=75.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+. +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4467799999999999999999999999999999999998889999999999999999999997 688899999999987
Q ss_pred c
Q 032066 143 A 143 (148)
Q Consensus 143 ~ 143 (148)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 78
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=8.4e-22 Score=115.52 Aligned_cols=84 Identities=32% Similarity=0.579 Sum_probs=78.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCce-eCCeEEEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE-LEGRAMRV 140 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~-i~g~~l~v 140 (148)
..+.++|||+|||+++++++|+++|.+ ||.|..+.++.++ ++.++|+|||+|.+.++|+.|+..||+.. ++|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999997 88999999999999999999999999999 99999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
.++.++.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9987653
No 79
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.87 E-value=9.1e-22 Score=123.07 Aligned_cols=82 Identities=28% Similarity=0.472 Sum_probs=77.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..++|||+|||+++++++|+++|++|| .|..+.++.++.++.++|||||+|.+.++|++|+..|||..++|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 032066 143 AQGR 146 (148)
Q Consensus 143 ~~~~ 146 (148)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 80
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=7e-22 Score=118.39 Aligned_cols=83 Identities=25% Similarity=0.528 Sum_probs=77.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred ecc
Q 032066 142 LAQ 144 (148)
Q Consensus 142 ~~~ 144 (148)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 81
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=114.61 Aligned_cols=86 Identities=36% Similarity=0.558 Sum_probs=80.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
......++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|++|+.. ++..++|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3455778999999999999999999999999999999999988899999999999999999999998 999999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
+++.++.
T Consensus 90 ~~a~~~~ 96 (105)
T 2dh8_A 90 KPCTPRG 96 (105)
T ss_dssp CCSCCSS
T ss_pred EEccCCC
Confidence 9998764
No 82
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.87 E-value=5.4e-22 Score=114.50 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=75.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
..+++|||+|||+++++++|+++|.+||.|..+.++.++.++.++++|||+|.+.++|++|+..||+..++|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 35689999999999999999999999999998888888888899999999999999999999999999999999999998
Q ss_pred cC
Q 032066 144 QG 145 (148)
Q Consensus 144 ~~ 145 (148)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 83
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=4.4e-21 Score=109.83 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=76.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
....++|||+|||+++++++|+++|++| .|..+.++.+ .++.++|+|||+|.+.++|++|+. +||..++|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4467899999999999999999999999 8999999998 778999999999999999999999 999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98763
No 84
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=112.98 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCce--eCCeEEEEE
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE--LEGRAMRVS 141 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~--i~g~~l~v~ 141 (148)
.++++|||+|||+++++++|+++|++||.|.++.+++ .+|+|||+|.+.++|..|+..+++.. ++|++|+|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4677999999999999999999999999999998873 36799999999999999999999864 889999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
+++++.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998864
No 85
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=3.8e-21 Score=120.49 Aligned_cols=84 Identities=29% Similarity=0.480 Sum_probs=79.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
....++|||.|||.++++++|+++|++||.|..+.++.++.++.++++|||+|.+.++|++|+..||+..|+|+.|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCC
Q 032066 143 AQGR 146 (148)
Q Consensus 143 ~~~~ 146 (148)
+.++
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9765
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.9e-22 Score=114.57 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeEEEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN--GVELEGRAMRV 140 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--~~~i~g~~l~v 140 (148)
+.+.++|||+|||+++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|+.|+..++ +..++|+.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346679999999999999999999999999999998854 6899999999999999999886 47899999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
.+++++.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 9998764
No 87
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-20 Score=110.53 Aligned_cols=85 Identities=24% Similarity=0.441 Sum_probs=78.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|++|+. ++..++|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344567899999999999999999999999999999999998889999999999999999999999 578999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
+++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9998763
No 88
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.5e-21 Score=115.00 Aligned_cols=85 Identities=36% Similarity=0.550 Sum_probs=78.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
......++|||.|||+++++++|+++|.+||.|..+.++.++.++.++++|||+|.+.++|++|+..+++ .++|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3445678999999999999999999999999999999999988899999999999999999999999998 899999999
Q ss_pred EeccCC
Q 032066 141 SLAQGR 146 (148)
Q Consensus 141 ~~~~~~ 146 (148)
+++.++
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 998653
No 89
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-21 Score=115.28 Aligned_cols=86 Identities=17% Similarity=0.288 Sum_probs=77.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEEEcCCC---CCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 032066 62 YAETDFKLFVGNLSWSVTTESLT---QAFQEYGNVVGARVLYDGES---GRSRGYGFVCYSTKAEMETALESLNGVELEG 135 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~---~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g 135 (148)
.....++|||+|||+++++++|+ ++|.+||.|..+.++.+..+ +.++|+|||+|.+.++|++|+..|||..++|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34467799999999999999999 99999999999999877653 3566999999999999999999999999999
Q ss_pred eEEEEEeccCCC
Q 032066 136 RAMRVSLAQGRR 147 (148)
Q Consensus 136 ~~l~v~~~~~~~ 147 (148)
+.|+|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998764
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=1.4e-21 Score=118.32 Aligned_cols=85 Identities=31% Similarity=0.494 Sum_probs=79.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|||..++|+.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34467899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.++
T Consensus 98 ~a~~~ 102 (126)
T 3ex7_B 98 WCFVR 102 (126)
T ss_dssp ESEES
T ss_pred EecCC
Confidence 99765
No 91
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.87 E-value=1.8e-21 Score=115.05 Aligned_cols=85 Identities=33% Similarity=0.602 Sum_probs=75.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||.++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..+ +..++|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999888999999999999999999999976 599999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998764
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.87 E-value=2.9e-22 Score=116.70 Aligned_cols=85 Identities=28% Similarity=0.507 Sum_probs=75.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcC-CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG-ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 139 (148)
......++|||+|||.++++++|+++|++|| |..+.+..++ .++.++|+|||+|.+.++|++|+ .|||..++|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3445678999999999999999999999999 9999999887 57889999999999999999999 8999999999999
Q ss_pred EEeccCCC
Q 032066 140 VSLAQGRR 147 (148)
Q Consensus 140 v~~~~~~~ 147 (148)
|++++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998875
No 93
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.1e-21 Score=112.22 Aligned_cols=84 Identities=21% Similarity=0.436 Sum_probs=75.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
......++|||.|||+++++++|+++|++||.|..+.+..+ +.++++|||+|.+.++|+.|+..||+..++|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999988643 457899999999999999999999999999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
+++++++
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9998764
No 94
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=112.61 Aligned_cols=84 Identities=32% Similarity=0.450 Sum_probs=77.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||.++++++|+++|.+||.|..+.++.++ ++.++++|||+|.+.++|+.|+..||+..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34467899999999999999999999999999999999886 58899999999999999999999999999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
+++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98643
No 95
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.3e-22 Score=117.90 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=76.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
..++|||+|||.++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|++|+ .|||..++|+.|+|+++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999888899999999999999999999 899999999999999987
Q ss_pred CC
Q 032066 145 GR 146 (148)
Q Consensus 145 ~~ 146 (148)
++
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 96
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=4.2e-21 Score=107.22 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
+.+.-|+|+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.++++|++|++.||+..++|+.|+|+++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3566799999999999999999999999999998853 5899999999999999999999999999999999998
Q ss_pred c
Q 032066 144 Q 144 (148)
Q Consensus 144 ~ 144 (148)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 97
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=6.2e-22 Score=120.67 Aligned_cols=86 Identities=24% Similarity=0.430 Sum_probs=79.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCc----eeC
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV----ELE 134 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~----~i~ 134 (148)
......++|||+|||+++++++|+++|.+||.|.. +.+++++.++.++|||||+|.+. +|.+|+..|||. .++
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 33456789999999999999999999999999976 99999988999999999999999 999999999999 999
Q ss_pred CeEEEEEeccCCC
Q 032066 135 GRAMRVSLAQGRR 147 (148)
Q Consensus 135 g~~l~v~~~~~~~ 147 (148)
|+.|+|+++.+++
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999998763
No 98
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-21 Score=114.74 Aligned_cols=80 Identities=10% Similarity=0.206 Sum_probs=74.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
...++|||+|||+++++++|+++|++||.|..+.++.++. +.++|+|||+|.+.++|+.|+. +++..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3567999999999999999999999999999999999876 8899999999999999999999 9999999999999986
Q ss_pred cC
Q 032066 144 QG 145 (148)
Q Consensus 144 ~~ 145 (148)
.+
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 99
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=114.34 Aligned_cols=84 Identities=27% Similarity=0.564 Sum_probs=76.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
......++|||+|||.++++++|+++|++||.|..+.+..+. +.++|+|||+|.+.++|++|+..|||..++|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334567899999999999999999999999999999998774 347899999999999999999999999999999999
Q ss_pred EeccCC
Q 032066 141 SLAQGR 146 (148)
Q Consensus 141 ~~~~~~ 146 (148)
+++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999876
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.3e-22 Score=113.84 Aligned_cols=82 Identities=21% Similarity=0.432 Sum_probs=76.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
.++++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+..|||..++|+.++++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45679999999999999999999999999999999999888999999999999999999999999999999999998876
Q ss_pred cC
Q 032066 144 QG 145 (148)
Q Consensus 144 ~~ 145 (148)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 101
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=116.16 Aligned_cols=83 Identities=36% Similarity=0.613 Sum_probs=78.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
...++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|+.|+.. ++..++|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3568999999999999999999999999999999999988899999999999999999999997 999999999999999
Q ss_pred cCCC
Q 032066 144 QGRR 147 (148)
Q Consensus 144 ~~~~ 147 (148)
.++.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 8764
No 102
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=1.1e-20 Score=114.13 Aligned_cols=84 Identities=36% Similarity=0.566 Sum_probs=79.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||..+++++|+++|++||.|..+.+..++ ++.++|+|||+|.+.++|+.|+..|||..++|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45577899999999999999999999999999999999887 88899999999999999999999999999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.+.
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 98765
No 103
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.86 E-value=4.2e-21 Score=115.93 Aligned_cols=82 Identities=21% Similarity=0.499 Sum_probs=77.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
..++|||+|||.++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+ .|||..++|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999888999999999999999999999 799999999999999997
Q ss_pred CCC
Q 032066 145 GRR 147 (148)
Q Consensus 145 ~~~ 147 (148)
+++
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 104
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-20 Score=112.56 Aligned_cols=84 Identities=24% Similarity=0.466 Sum_probs=78.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--------C
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL--------E 134 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i--------~ 134 (148)
....++|||+|||+++++++|+++|.+||.|..+.++.++ ++.++|+|||+|.+.++|+.|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4467899999999999999999999999999999999997 888999999999999999999999999999 5
Q ss_pred CeEEEEEeccCCC
Q 032066 135 GRAMRVSLAQGRR 147 (148)
Q Consensus 135 g~~l~v~~~~~~~ 147 (148)
+++|.|.++.++.
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 7889999998764
No 105
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=109.76 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=71.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHh--CCceeCCeEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL--NGVELEGRAM 138 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l--~~~~i~g~~l 138 (148)
....++++|||+|||+.+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|+.|+..+ ++..++|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 33456789999999999999999999999999999988743 789999999999999999977 5688999999
Q ss_pred EEEeccCCC
Q 032066 139 RVSLAQGRR 147 (148)
Q Consensus 139 ~v~~~~~~~ 147 (148)
+|.+++++.
T Consensus 84 ~V~~a~~~~ 92 (101)
T 2cq1_A 84 YIQYSNHKE 92 (101)
T ss_dssp EEEECSCSS
T ss_pred EEEEcCccc
Confidence 999998763
No 106
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.8e-21 Score=113.65 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=77.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEE-EcCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeEEE
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGN-VVGARVL-YDGESGRSRGYGFVCYSTKAEMETALESLN--GVELEGRAMR 139 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--~~~i~g~~l~ 139 (148)
.+.++|||+|||+++++++|+++|.+||. |..+.++ .+..++.++|+|||+|.+.++|+.|+..|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35679999999999999999999999998 9999888 677778899999999999999999999996 5899999999
Q ss_pred EEeccCCC
Q 032066 140 VSLAQGRR 147 (148)
Q Consensus 140 v~~~~~~~ 147 (148)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99998764
No 107
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.86 E-value=9.6e-22 Score=108.70 Aligned_cols=75 Identities=31% Similarity=0.594 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 68 ~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
+|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+. +++..++|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999988889999999999999999999998 9999999999999875
No 108
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=116.40 Aligned_cols=82 Identities=33% Similarity=0.557 Sum_probs=76.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred ec
Q 032066 142 LA 143 (148)
Q Consensus 142 ~~ 143 (148)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.4e-21 Score=111.96 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeEEE
Q 032066 63 AETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMR 139 (148)
Q Consensus 63 ~~~~~~l~i~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l~ 139 (148)
..++++|||+|||+ .+++++|+++|++||.|..+.++++ +++|||+|.+.++|+.|+..|++ ..++|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999998754 47999999999999999999986 469999999
Q ss_pred EEeccCC
Q 032066 140 VSLAQGR 146 (148)
Q Consensus 140 v~~~~~~ 146 (148)
|.+++.+
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999864
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.85 E-value=5.1e-22 Score=113.55 Aligned_cols=80 Identities=30% Similarity=0.689 Sum_probs=73.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
++|||+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.+ |++|+..|||..++|+.|+|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999999765
Q ss_pred C
Q 032066 147 R 147 (148)
Q Consensus 147 ~ 147 (148)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 111
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-20 Score=110.05 Aligned_cols=79 Identities=25% Similarity=0.348 Sum_probs=72.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-----e
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG-----R 136 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g-----~ 136 (148)
+....++|||.|||+++++++|+++|.+||.|..+.++.+ ++|||+|.+.++|+.|+..||+..++| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999988754 799999999999999999999999999 9
Q ss_pred EEEEEeccCCC
Q 032066 137 AMRVSLAQGRR 147 (148)
Q Consensus 137 ~l~v~~~~~~~ 147 (148)
.|+|+++.++.
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 99999998763
No 112
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-21 Score=108.24 Aligned_cols=76 Identities=34% Similarity=0.647 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
++|+|+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..++ ..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999 9999999999986
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-21 Score=112.93 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=72.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMR 139 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l~ 139 (148)
...++++|||+|||+++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|+.|+..+++ ..++|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3446789999999999999999999999999999998854 68999999999999999998874 689999999
Q ss_pred EEeccCCC
Q 032066 140 VSLAQGRR 147 (148)
Q Consensus 140 v~~~~~~~ 147 (148)
|.+++++.
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99998763
No 114
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=113.95 Aligned_cols=82 Identities=16% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 138 (148)
..+.++|||+|||+.+++++|+ ++|++||.|..+.+. .++.++|+|||+|.+.++|+.|+..|||..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456799999999999999876 699999999988775 356789999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 032066 139 RVSLAQGRR 147 (148)
Q Consensus 139 ~v~~~~~~~ 147 (148)
+|.++.++.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998764
No 115
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.85 E-value=6.1e-21 Score=112.02 Aligned_cols=82 Identities=22% Similarity=0.394 Sum_probs=74.6
Q ss_pred CCCcceEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe
Q 032066 63 AETDFKLFVGNLSWSV------TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR 136 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~ 136 (148)
...+++|||+|||+.+ ++++|+++|++||.|..+.++ +.++.++|+|||+|.+.++|+.|+..|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3456799999999999 779999999999999999887 46788999999999999999999999999999998
Q ss_pred -EEEEEeccCC
Q 032066 137 -AMRVSLAQGR 146 (148)
Q Consensus 137 -~l~v~~~~~~ 146 (148)
.|+|.++.+.
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998653
No 116
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.85 E-value=8.6e-21 Score=113.58 Aligned_cols=81 Identities=21% Similarity=0.388 Sum_probs=75.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGN---VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 139 (148)
....++|||+|||+++++++|+++|++||. |..+.++.++. +.++|+|||+|.+.++|++|+. +|+..|+|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 446789999999999999999999999998 89999999866 8899999999999999999999 999999999999
Q ss_pred EEeccC
Q 032066 140 VSLAQG 145 (148)
Q Consensus 140 v~~~~~ 145 (148)
|.++.+
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998754
No 117
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=106.97 Aligned_cols=77 Identities=29% Similarity=0.575 Sum_probs=71.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|||.++++++|+++|++||.|..+.+. +++|||+|.+.++|+.|+..||+..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999886 56999999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+.++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 97764
No 118
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-20 Score=108.04 Aligned_cols=79 Identities=20% Similarity=0.427 Sum_probs=72.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC--CeEEEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE--GRAMRV 140 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~--g~~l~v 140 (148)
..++++|||+|||+++++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|+..||+..++ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345679999999999999999999999999999988643 679999999999999999999999999 999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
++++++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998875
No 119
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.3e-20 Score=108.35 Aligned_cols=84 Identities=29% Similarity=0.497 Sum_probs=75.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
....+.++|||+|||.++++++|+++|++|+ .+.++.++.++.++++|||+|.+.++|++|+..||+..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3455678999999999999999999999873 6777888788899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
+++.++.
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998764
No 120
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.3e-21 Score=113.54 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=76.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNV-VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
.....++|||+|||+++++++|+++|.+||.| ..+.++.++ ++.++|+|||+|.+.++|++|+.. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999887 888999999999999999999996 999999999999
Q ss_pred EeccCC
Q 032066 141 SLAQGR 146 (148)
Q Consensus 141 ~~~~~~ 146 (148)
.++.++
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998653
No 121
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=109.03 Aligned_cols=82 Identities=33% Similarity=0.575 Sum_probs=73.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||+++++++|+++|.+||.| .++.+ .++.++++|||+|.+.++|++|+..||+..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567899999999999999999999999976 45555 567889999999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998764
No 122
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.85 E-value=5.1e-21 Score=116.87 Aligned_cols=83 Identities=20% Similarity=0.368 Sum_probs=76.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGN---VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 138 (148)
.....++|||+|||+++++++|+++|++||. |..+.++.++. +.++|+|||+|.+.++|++|+. +|+..++|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3446789999999999999999999999999 88999999976 8999999999999999999999 99999999999
Q ss_pred EEEeccCC
Q 032066 139 RVSLAQGR 146 (148)
Q Consensus 139 ~v~~~~~~ 146 (148)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998643
No 123
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.85 E-value=3.2e-20 Score=107.42 Aligned_cols=79 Identities=20% Similarity=0.424 Sum_probs=71.5
Q ss_pred CCCCCcceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 032066 61 LYAETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 139 (148)
....++++|||+|||. ++++++|+++|++||.|..+.+. +|+|||+|.+.++|++|+..|||..++|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455778999999998 99999999999999999998883 67999999999999999999999999999999
Q ss_pred EEeccCCC
Q 032066 140 VSLAQGRR 147 (148)
Q Consensus 140 v~~~~~~~ 147 (148)
|++++++.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99998763
No 124
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=109.78 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=70.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMRV 140 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l~v 140 (148)
..++++|||+|||+++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|..|+..|++ ..++|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446689999999999999999999999999999988643 68999999999999999998865 4599999999
Q ss_pred EeccCCC
Q 032066 141 SLAQGRR 147 (148)
Q Consensus 141 ~~~~~~~ 147 (148)
.+++++.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9998763
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=108.98 Aligned_cols=80 Identities=30% Similarity=0.495 Sum_probs=73.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
...+.++|||+|||+.+++++|+++|.+||.|..+.+.++ +++|||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999988743 6799999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 998764
No 126
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5.9e-20 Score=105.32 Aligned_cols=78 Identities=31% Similarity=0.558 Sum_probs=71.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||+++++++|+++|++||.|..+.+. +++|||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999886 3399999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998764
No 127
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-21 Score=116.74 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=76.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
+....++|||+|||+++++++|+++|.+||.|..+.++.+..++.++|+|||+|.+.++|+.|+. +|+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999999886666666789999999999999999999999 99999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=107.62 Aligned_cols=80 Identities=30% Similarity=0.513 Sum_probs=72.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
...+++|||+|||+++++++|+++|.+||.|. +.++.+ .++|+|||+|.+.++|+.|+..|||..++|+.|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999986 566654 4688999999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+++++
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98875
No 129
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-21 Score=114.34 Aligned_cols=84 Identities=29% Similarity=0.500 Sum_probs=74.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||+++++++|+++|.+||.|.. .++.+..++.++|+|||+|.+.++|++|+. |||..++|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999998877 555555667889999999999999999999 99999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 998764
No 130
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=110.68 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=72.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
....+|+|+|||+++++++|+++|++| .|..+.++.++. +.++|+|||+|.+.++|++|+ .+|+..++|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 889999998865 889999999999999999999 59999999999999887
Q ss_pred cC
Q 032066 144 QG 145 (148)
Q Consensus 144 ~~ 145 (148)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 131
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.84 E-value=2.4e-20 Score=110.07 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
...++|||+|||+++++++|+++|++|| .|..+.+... .++|+|||+|.+.++|++|+..|||..++|+.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567999999999999999999999999 8998877532 3689999999999999999999999999999999999
Q ss_pred ccCC
Q 032066 143 AQGR 146 (148)
Q Consensus 143 ~~~~ 146 (148)
+..+
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8755
No 132
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=7.6e-21 Score=110.06 Aligned_cols=82 Identities=22% Similarity=0.442 Sum_probs=74.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 138 (148)
..++++|||+|||.++++++|+ ++|++||.|..+.+.. ++.++|+|||+|.+.++|+.|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467799999999999999999 9999999999988763 35678999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 032066 139 RVSLAQGRR 147 (148)
Q Consensus 139 ~v~~~~~~~ 147 (148)
+|+++.++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998864
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=108.42 Aligned_cols=81 Identities=22% Similarity=0.464 Sum_probs=72.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
...+.++|||+|||+.+++++|+++|++||.|..+ ..++.++|+|||+|.+.++|+.|+..|||..++|+.|+|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467899999999999999999999999987665 2457789999999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997764
No 134
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=109.62 Aligned_cols=78 Identities=24% Similarity=0.540 Sum_probs=72.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
...++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|+..|||..++|+.|+|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45679999999999999999999999999999988754 679999999999999999999999999999999999
Q ss_pred cCCC
Q 032066 144 QGRR 147 (148)
Q Consensus 144 ~~~~ 147 (148)
+++.
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 135
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.84 E-value=2.7e-20 Score=109.75 Aligned_cols=78 Identities=19% Similarity=0.405 Sum_probs=72.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
....+++|||+|||.++++++|+++|++||.|..+.+. +|+|||+|.+.++|+.|+..|||..++|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999887 6799999999999999999999999999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
+++++.
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998764
No 136
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=109.83 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=75.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG-ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
....++|||+|||+++++++|+++|.+||.|.. +.++.+ .++.++|+|||+|.+.++|++|+.. ++..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 446789999999999999999999999999987 778777 7889999999999999999999997 9999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.++
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98664
No 137
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.6e-21 Score=113.93 Aligned_cols=85 Identities=26% Similarity=0.450 Sum_probs=72.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|||+++++++|+++|.+||.|..+.+.....++.++|+|||+|.+.++|+.|+..|||..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44678999999999999999999999999984332222222677899999999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98764
No 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-19 Score=105.14 Aligned_cols=80 Identities=29% Similarity=0.452 Sum_probs=71.8
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 032066 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQEY--GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 137 (148)
Q Consensus 60 ~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 137 (148)
.....+.++|||+|||+.+++++|+++|.+| |.|..+.+. +++|||+|.+.++|+.|+..|||..++|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445567899999999999999999999999 888888663 569999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 032066 138 MRVSLAQGRR 147 (148)
Q Consensus 138 l~v~~~~~~~ 147 (148)
|+|.+++++.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999998764
No 139
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5.1e-20 Score=104.05 Aligned_cols=77 Identities=25% Similarity=0.411 Sum_probs=70.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHh-CCceeCCeEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL-NGVELEGRAMRV 140 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-~~~~i~g~~l~v 140 (148)
.....++|||+|||.++++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..| +|..++|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999988753 689999999999999999999 999999999999
Q ss_pred Eecc
Q 032066 141 SLAQ 144 (148)
Q Consensus 141 ~~~~ 144 (148)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 140
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.84 E-value=1.6e-20 Score=111.99 Aligned_cols=81 Identities=25% Similarity=0.450 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
+.++++|||+|||+++++++|+++|++||.|..+.++.+ +.++|+|||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446679999999999999999999999999999999865 34589999999999999999999999999999999999
Q ss_pred ccCC
Q 032066 143 AQGR 146 (148)
Q Consensus 143 ~~~~ 146 (148)
+.++
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9764
No 141
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=109.82 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=74.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||+++++++|+++|++||. ..+.++.++ ++.++|+|||+|.+.++|++|+. +|+..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456679999999999999999999999995 499999986 89999999999999999999995 79999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.+.
T Consensus 88 ~~~~~ 92 (102)
T 1wez_A 88 LNSTA 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 98765
No 142
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.9e-20 Score=108.40 Aligned_cols=76 Identities=21% Similarity=0.436 Sum_probs=70.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
..++|||+|||.++++++|+++|++||.|..+.+. .++|+|||+|.+.++|..|+..|||..++|+.|+|.+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46799999999999999999999999999999887 247899999999999999999999999999999999998
Q ss_pred CC
Q 032066 145 GR 146 (148)
Q Consensus 145 ~~ 146 (148)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 143
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.8e-20 Score=104.39 Aligned_cols=77 Identities=31% Similarity=0.601 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
....++|||+|||+++++++|+++|++||.|..+.+. +++|||+|.+.++|+.|+..|||..++|+.|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4467799999999999999999999999999999886 33899999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+.+++
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97764
No 144
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=1e-19 Score=106.44 Aligned_cols=77 Identities=30% Similarity=0.531 Sum_probs=70.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|||+++++++|+++|.+||.|..+.++ +++|||+|.+.++|++|+..||+..++|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456799999999999999999999999999998875 44899999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+.++.
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 97764
No 145
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.83 E-value=5e-21 Score=105.78 Aligned_cols=75 Identities=21% Similarity=0.423 Sum_probs=71.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 68 ~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
+|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+. +++..++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999988889999999999999999999999 5999999999999875
No 146
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=6.4e-21 Score=106.89 Aligned_cols=73 Identities=23% Similarity=0.453 Sum_probs=67.1
Q ss_pred cceEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe-EE
Q 032066 66 DFKLFVGNLSWSV------TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR-AM 138 (148)
Q Consensus 66 ~~~l~i~nlp~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~-~l 138 (148)
+++|||+|||..+ ++++|+++|++||.|..+.++ +.++.++|+|||+|.+.++|+.|+..|||..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999999887 46788999999999999999999999999999999 88
Q ss_pred EE
Q 032066 139 RV 140 (148)
Q Consensus 139 ~v 140 (148)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 147
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.83 E-value=1.3e-19 Score=114.17 Aligned_cols=81 Identities=31% Similarity=0.549 Sum_probs=77.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 032066 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 145 (148)
Q Consensus 66 ~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 145 (148)
+++|||+|||+++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|+.|+..|+|..++|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999999876
Q ss_pred C
Q 032066 146 R 146 (148)
Q Consensus 146 ~ 146 (148)
+
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.83 E-value=1.2e-19 Score=118.95 Aligned_cols=84 Identities=30% Similarity=0.436 Sum_probs=77.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|||+++++++|+++|++||.|..+.+++++.++.++|+|||+|.+.++|++|+..+++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 032066 143 AQGR 146 (148)
Q Consensus 143 ~~~~ 146 (148)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8654
No 149
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=1.9e-20 Score=123.89 Aligned_cols=81 Identities=26% Similarity=0.509 Sum_probs=76.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..++|||+|||+++++++|+++|.+|| .|..+.|+.++.++.++|||||+|.+.++|++|+..||+..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 032066 143 AQG 145 (148)
Q Consensus 143 ~~~ 145 (148)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 150
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=109.03 Aligned_cols=75 Identities=29% Similarity=0.530 Sum_probs=70.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
++|||+|||+++++++|+++|++||.|..+.+..+ ++|+|||+|.+.++|+.|+..|||..++|+.|+|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999998865 6889999999999999999999999999999999999765
No 151
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.83 E-value=5.9e-21 Score=112.44 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=76.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGN---VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 138 (148)
.....++|||+|||+++++++|+++|.+||. |..+.++.++. +.++|+|||+|.+.++|++|+. +|+..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999988 89999998876 8899999999999999999999 99999999999
Q ss_pred EEEeccCC
Q 032066 139 RVSLAQGR 146 (148)
Q Consensus 139 ~v~~~~~~ 146 (148)
+|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998653
No 152
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.83 E-value=2.3e-20 Score=109.01 Aligned_cols=81 Identities=22% Similarity=0.530 Sum_probs=75.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
...+++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|+|||+|.+.++|+.|+. ++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 88999999999999999999999 99999999999988
Q ss_pred ccCC
Q 032066 143 AQGR 146 (148)
Q Consensus 143 ~~~~ 146 (148)
+.++
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 7654
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=9.8e-20 Score=114.99 Aligned_cols=83 Identities=27% Similarity=0.486 Sum_probs=78.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
++++|+|+|||+++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|+.|+..++|..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CCC
Q 032066 145 GRR 147 (148)
Q Consensus 145 ~~~ 147 (148)
++.
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
No 154
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.1e-20 Score=105.44 Aligned_cols=77 Identities=36% Similarity=0.564 Sum_probs=69.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGN-VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG-VELEGRAMRVS 141 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~-~~i~g~~l~v~ 141 (148)
...++|||+|||+++++++|+++|++||. +..+.+. ++++|||+|.+.++|+.|+..||| ..++|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45679999999999999999999999999 6655552 477999999999999999999999 99999999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
++.++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998764
No 155
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=1.2e-19 Score=107.36 Aligned_cols=76 Identities=30% Similarity=0.582 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 63 AETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
....++|||+|||++ +++++|+++|.+||.|..+.+ ++++|||+|.+.++|+.|+..|||..++|+.|+|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345579999999999 999999999999999999988 46799999999999999999999999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.++
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99754
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.6e-20 Score=109.76 Aligned_cols=79 Identities=15% Similarity=0.294 Sum_probs=70.7
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeEEE
Q 032066 63 AETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN--GVELEGRAMR 139 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--~~~i~g~~l~ 139 (148)
..++++|||+|||++ +++++|+++|++||.|..+.+++ .+|+|||+|.+.++|+.|+..|+ +..++|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999998863 37899999999999999999886 4669999999
Q ss_pred EEeccCCC
Q 032066 140 VSLAQGRR 147 (148)
Q Consensus 140 v~~~~~~~ 147 (148)
|.+++++.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99998764
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=104.81 Aligned_cols=80 Identities=29% Similarity=0.357 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
...+++|||+|||+++++++|+++|.+||.|..+ .++.++.++ .|||+|.+.++|+.|+..|||..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 477665433 39999999999999999999999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99876
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.82 E-value=2e-19 Score=112.18 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=71.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEE
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVS 141 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~ 141 (148)
....+|||+||++.+++++|+++|++||.|.++.+... .++++|||+|.+.++|+.|+..|||..|.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34467899999999999999999999999999988643 257899999999999999999999999965 999999
Q ss_pred eccCCC
Q 032066 142 LAQGRR 147 (148)
Q Consensus 142 ~~~~~~ 147 (148)
+++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998763
No 159
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.82 E-value=9.2e-20 Score=108.36 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=72.2
Q ss_pred cceEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecC----HHH----HHHHHH--HhCCc
Q 032066 66 DFKLFVGNL----SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST----KAE----METALE--SLNGV 131 (148)
Q Consensus 66 ~~~l~i~nl----p~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~----~~~----a~~a~~--~l~~~ 131 (148)
+..|+|+|| |+.+++.+|+++|+.||.|..+.++.++.++.++|+|||+|.+ ++. |.+|+. .++|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 358999999 9999999999999999999999999999999999999999996 333 888988 78999
Q ss_pred eeCCeEEEEEeccC
Q 032066 132 ELEGRAMRVSLAQG 145 (148)
Q Consensus 132 ~i~g~~l~v~~~~~ 145 (148)
.|+|+.|+|.+.+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998653
No 160
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.82 E-value=5.2e-21 Score=117.17 Aligned_cols=122 Identities=15% Similarity=0.172 Sum_probs=73.3
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEE
Q 032066 18 GFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGAR 97 (148)
Q Consensus 18 g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~ 97 (148)
|+|+.+|..++.+-.++.....+ ..+....-.... ..........++|||+|||+++++++|+++|++|| +..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~---~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGD---SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCC---cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 56778887777776666543322 233222111111 11122334567999999999999999999999999 67999
Q ss_pred EEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 98 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 98 ~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
++.++. +.++|+|||+|.+.++|++|+ .+|+..++|+.|.|.++.++
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 998865 889999999999999999999 69999999999999998765
No 161
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=7.1e-22 Score=118.03 Aligned_cols=84 Identities=26% Similarity=0.454 Sum_probs=78.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG 135 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g 135 (148)
.+.++|||+|||.++++++|+++|++||.|.. +.++.++.++.++|+|||+|.+.++|++|+..|||..++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35678999999999999999999999999988 8888888888899999999999999999999999999999
Q ss_pred eEEEEEeccCCC
Q 032066 136 RAMRVSLAQGRR 147 (148)
Q Consensus 136 ~~l~v~~~~~~~ 147 (148)
+.|+|+++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999997763
No 162
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=114.34 Aligned_cols=82 Identities=28% Similarity=0.492 Sum_probs=72.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEE--------EEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA--------RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 134 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~--------~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~ 134 (148)
..++++|||+|||+++++++|+++|++||.|..+ .+. .++.++|+|||+|.+.++|..|+..|||..++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4466799999999999999999999999988763 333 35778999999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q 032066 135 GRAMRVSLAQGRR 147 (148)
Q Consensus 135 g~~l~v~~~~~~~ 147 (148)
|+.|.|.++++++
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999997653
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=1.4e-19 Score=115.33 Aligned_cols=82 Identities=37% Similarity=0.595 Sum_probs=77.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
...++|||+|||+.+++++|+++|.+||.|..+.+..++ ++.++|+|||+|.+.++|+.|+..|||..++|+.|.|+++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999887 7889999999999999999999999999999999999998
Q ss_pred cCC
Q 032066 144 QGR 146 (148)
Q Consensus 144 ~~~ 146 (148)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 164
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.5e-20 Score=108.34 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=70.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
...++|||+|||+++++++|+++|++||.|..+.++. .+++|||+|.+.++|+.|+..|||..++|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3567999999999999999999999999999988763 4679999999999999999999999999999999998
Q ss_pred cCC
Q 032066 144 QGR 146 (148)
Q Consensus 144 ~~~ 146 (148)
..+
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 653
No 165
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.81 E-value=5.9e-19 Score=106.30 Aligned_cols=77 Identities=21% Similarity=0.392 Sum_probs=69.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEE
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY-GFVCYSTKAEMETALESLNGVELEG--RAMRVS 141 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~ 141 (148)
.--.|+|+||++.+++++|+++|++||.|..+.+... .+++ |||+|.+.++|+.|+..|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4456889999999999999999999999999988754 2466 9999999999999999999999988 999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
+++++
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 99875
No 166
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.1e-19 Score=105.00 Aligned_cols=76 Identities=21% Similarity=0.459 Sum_probs=69.5
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 63 AETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 63 ~~~~~~l~i~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
..++++|||+|||+ .+++++|+++|++||.|..+.+. +|+|||+|.+.++|+.|+..|||..+.|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34678999999998 99999999999999999999884 6799999999999999999999999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.++
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98765
No 167
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.4e-20 Score=110.15 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=72.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNV----VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 139 (148)
....+|||+|||+++++++|+++|++||.| ..+.++.+ .++.++|+|||+|.+.++|++|+.. |+..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 356799999999999999999999999975 68889888 5789999999999999999999995 99999999999
Q ss_pred EEeccC
Q 032066 140 VSLAQG 145 (148)
Q Consensus 140 v~~~~~ 145 (148)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 168
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.81 E-value=3.1e-19 Score=101.47 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=69.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
..++|||+|||+++++++|+++|++| .|..+.+. .++|+|||+|.+.++|+.|+..|||..++|+.|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 89988874 468999999999999999999999999999999999986
Q ss_pred CC
Q 032066 145 GR 146 (148)
Q Consensus 145 ~~ 146 (148)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 169
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.3e-19 Score=102.08 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=69.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
...++|||+|||+++++++|+++|.+||.|..+ +.++.++. +|||+|.+.++|+.|+. |||..++|+.|.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345699999999999999999999999999987 55545444 99999999999999999 9999999999999998
Q ss_pred cCCC
Q 032066 144 QGRR 147 (148)
Q Consensus 144 ~~~~ 147 (148)
.++.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 7653
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=8.7e-19 Score=113.21 Aligned_cols=84 Identities=36% Similarity=0.610 Sum_probs=77.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+.. ++..++|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345778999999999999999999999999999999999988899999999999999999999985 9999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.++
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98654
No 171
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=5.6e-19 Score=126.56 Aligned_cols=84 Identities=29% Similarity=0.629 Sum_probs=79.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|||+.+++++|.++|.+||.|..+.|+.+..++.++|||||+|.+.++|+.||..|||..|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCC
Q 032066 143 AQGR 146 (148)
Q Consensus 143 ~~~~ 146 (148)
+.++
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 9764
No 172
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.80 E-value=1.2e-18 Score=112.58 Aligned_cols=117 Identities=10% Similarity=0.144 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHh--CCCeecCcEEEEeecCCCCCCCCC-----CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 032066 26 TVEDCNAVIENL--DGREYLGRILRVNFSDKPKPKLPL-----YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARV 98 (148)
Q Consensus 26 ~~~~a~~a~~~l--~~~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~ 98 (148)
+.+.+..|+... ....+.+....+..... .+.... .....++|||+|||+++++++|+++|++||.|..+.+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~-~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS-KPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT-SCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc-CCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE
Confidence 567788888765 44455555555554421 111111 1224579999999999999999999999999999999
Q ss_pred EEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 032066 99 LYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 145 (148)
Q Consensus 99 ~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 145 (148)
+++. ++.++|+|||+|.+.++|+.|+..+ +..++|+.|.|.++..
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 9885 4888999999999999999999855 4599999999998754
No 173
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-18 Score=99.05 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=69.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
..+.++|||+|+ ++++++|+++|++||.|..+.+. .++|+|||+|.+.++|++|+..|||..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 89999999999999999999884 3578999999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98764
No 174
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.1e-19 Score=109.39 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVV--GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 140 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 140 (148)
....++|||+|||+++++++|+++|++| .|. .+.++.++. +.++|+|||+|.+.++|++|+. +++..|+|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3456789999999999999999999999 566 888988876 8999999999999999999999 5789999999999
Q ss_pred EeccC
Q 032066 141 SLAQG 145 (148)
Q Consensus 141 ~~~~~ 145 (148)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98764
No 175
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=3.2e-18 Score=102.61 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=67.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEEec
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY-GFVCYSTKAEMETALESLNGVELEG--RAMRVSLA 143 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~ 143 (148)
..|+|+|||+.+++++|+++|++||.|..+.+... .|+ |||+|.+.++|..|+..|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34679999999999999999999999999988642 265 9999999999999999999999987 69999999
Q ss_pred cCCC
Q 032066 144 QGRR 147 (148)
Q Consensus 144 ~~~~ 147 (148)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8763
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.6e-19 Score=98.61 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=65.2
Q ss_pred cce-EEEcCCCCCCCHHH----HHHHHhhcC-CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 032066 66 DFK-LFVGNLSWSVTTES----LTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139 (148)
Q Consensus 66 ~~~-l~i~nlp~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 139 (148)
+.+ |||.|||..+++++ |+++|.+|| .|..+ ++ |+|||.|.+.++|++|++.|+|..+.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999988 558999995 99887 22 8999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 032066 140 VSLAQGRRS 148 (148)
Q Consensus 140 v~~~~~~~~ 148 (148)
|+++..+++
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999988764
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.79 E-value=2.4e-18 Score=100.66 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=72.1
Q ss_pred CCcceEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEEEcCCC-CCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 032066 64 ETDFKLFVGNLSW-----SVTTESLTQAFQEYGNVVGARVLYDGES-GRSRGYGFVCYSTKAEMETALESLNGVELEGRA 137 (148)
Q Consensus 64 ~~~~~l~i~nlp~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 137 (148)
.++++|+|.|+.. +-++++|++.|++||.|..+.++.++.+ +.++|+|||+|.+.++|++|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999963 2378999999999999999999987654 578999999999999999999999999999999
Q ss_pred EEEEeccC
Q 032066 138 MRVSLAQG 145 (148)
Q Consensus 138 l~v~~~~~ 145 (148)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 178
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=3.7e-19 Score=105.97 Aligned_cols=76 Identities=26% Similarity=0.388 Sum_probs=66.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE-----E
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA-----M 138 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~-----l 138 (148)
...++|||.|||+++++++|+++|.+||.|..+.++.+ ++|||+|.+.++|+.|+..|||..++|+. +
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45679999999999999999999999999999988643 79999999999999999999999999988 7
Q ss_pred EEEeccCC
Q 032066 139 RVSLAQGR 146 (148)
Q Consensus 139 ~v~~~~~~ 146 (148)
+|..+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 88776654
No 179
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=103.86 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=68.3
Q ss_pred CCCcceEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCcee-----CC
Q 032066 63 AETDFKLFV--GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL-----EG 135 (148)
Q Consensus 63 ~~~~~~l~i--~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i-----~g 135 (148)
..+..+||| +||++++++++|+++|++||.|..+.++. .+|||||+|.+.++|++|+..|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345678999 77999999999999999999999887752 278999999999999999999999998 68
Q ss_pred eEEEEEeccC
Q 032066 136 RAMRVSLAQG 145 (148)
Q Consensus 136 ~~l~v~~~~~ 145 (148)
++|.|.++..
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 9999999864
No 180
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2e-18 Score=108.63 Aligned_cols=79 Identities=29% Similarity=0.506 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
++|||+|||.++++++|+++|++||.|..+.+..++. +.++|+|||+|.+.++|+.|+..++|..+.|+.|.+.++.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4799999999999999999999999999999998854 678999999999999999999999999999999999998665
No 181
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.78 E-value=2.1e-18 Score=98.18 Aligned_cols=77 Identities=27% Similarity=0.448 Sum_probs=62.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCce--eCCeEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE--LEGRAMR 139 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~--i~g~~l~ 139 (148)
...++.+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ +++.. ++|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456779999999999999999999999999999988753 68999999999999983 55544 5699999
Q ss_pred EEeccCCC
Q 032066 140 VSLAQGRR 147 (148)
Q Consensus 140 v~~~~~~~ 147 (148)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998764
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.77 E-value=2.6e-18 Score=111.94 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=70.4
Q ss_pred CcceEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 032066 65 TDFKLFVGNLS-WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143 (148)
Q Consensus 65 ~~~~l~i~nlp-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 143 (148)
++++|||+||| ..+++++|+++|++||.|.++.++.+ .+|+|||+|.+.++|+.|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999998754 3689999999999999999999999999999999998
Q ss_pred cC
Q 032066 144 QG 145 (148)
Q Consensus 144 ~~ 145 (148)
+.
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 183
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=2.3e-18 Score=112.78 Aligned_cols=82 Identities=24% Similarity=0.506 Sum_probs=74.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
..++|||+|||.++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+..|++..++|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45789999999999999999999999999999999888788899999999999999999999999999999999998875
Q ss_pred CC
Q 032066 145 GR 146 (148)
Q Consensus 145 ~~ 146 (148)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 184
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=4.6e-18 Score=96.35 Aligned_cols=72 Identities=21% Similarity=0.563 Sum_probs=65.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEY----G-------NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 132 (148)
.+.++|||+|||+++++++|+++|++| | .|..+.+..+ +|+|||+|.+.++|+.|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 467899999999999999999999999 8 8888877633 789999999999999999 899999
Q ss_pred eCCeEEEEEe
Q 032066 133 LEGRAMRVSL 142 (148)
Q Consensus 133 i~g~~l~v~~ 142 (148)
++|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 185
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=101.83 Aligned_cols=64 Identities=22% Similarity=0.469 Sum_probs=58.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCC---CCceeEEEEEecCHHHHHHHHHHh
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES---GRSRGYGFVCYSTKAEMETALESL 128 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~~~~fv~f~~~~~a~~a~~~l 128 (148)
..+++|||+|||+++++++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|++|+..+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4567999999999999999999999999998 777766665 688999999999999999999988
No 186
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=9.3e-18 Score=106.47 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=74.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCC--CceeEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG--RSRGYGFVCYSTKAEMETALESLNGVELE---GRAMR 139 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~~~~i~---g~~l~ 139 (148)
.+++|||+|||+++++++|+++|++||.|..+.++.++.++ .++|+|||+|.+.++|+.|+..++|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999997776 78999999999999999999999998775 57788
Q ss_pred EEeccCC
Q 032066 140 VSLAQGR 146 (148)
Q Consensus 140 v~~~~~~ 146 (148)
+.++.++
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8877654
No 187
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=9.5e-18 Score=100.64 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=69.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 142 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 142 (148)
....++|||+|+ ++++++|+++|++||.|..+.+. .++|+|||+|.+.++|+.|+..|||..++|+.|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999995 69999999999999999999885 3578999999999999999999999999999999999
Q ss_pred ccCCC
Q 032066 143 AQGRR 147 (148)
Q Consensus 143 ~~~~~ 147 (148)
+.++.
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98764
No 188
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=97.87 Aligned_cols=76 Identities=20% Similarity=0.380 Sum_probs=65.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
.+++|||+|||+++++++|+++|++||.|..+.++.+ ++|+|||+|.+.++|++|... +..++|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 5679999999999999999999999999999988744 688999999999999864331 355699999999998
Q ss_pred CCC
Q 032066 145 GRR 147 (148)
Q Consensus 145 ~~~ 147 (148)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=4.8e-18 Score=107.11 Aligned_cols=80 Identities=29% Similarity=0.666 Sum_probs=73.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
++++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|+.|+.. +..++|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999988899999999999999999999994 678999999998876
Q ss_pred CC
Q 032066 145 GR 146 (148)
Q Consensus 145 ~~ 146 (148)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-17 Score=95.84 Aligned_cols=83 Identities=16% Similarity=0.303 Sum_probs=70.4
Q ss_pred CCCCCcceEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 032066 61 LYAETDFKLFVGNLSWSVT-----------TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129 (148)
Q Consensus 61 ~~~~~~~~l~i~nlp~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 129 (148)
..+.++++|+|.||..... +++|+++|++||.|..+.+ .++ .++|+|||+|.+.++|+.|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3455778999999954432 5799999999999999965 443 278999999999999999999999
Q ss_pred CceeCCeEEEEEeccCCC
Q 032066 130 GVELEGRAMRVSLAQGRR 147 (148)
Q Consensus 130 ~~~i~g~~l~v~~~~~~~ 147 (148)
|..++|+.|.|.++.++.
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 999999999999988753
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=2.9e-17 Score=111.77 Aligned_cols=81 Identities=22% Similarity=0.454 Sum_probs=73.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 138 (148)
..+.++|||+|||+++++++|+ ++|.+||.|..+.+.+ ++.++|+|||+|.+.++|+.|+..|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4467899999999999999977 8999999999998875 56789999999999999999999999999999999
Q ss_pred EEEeccCC
Q 032066 139 RVSLAQGR 146 (148)
Q Consensus 139 ~v~~~~~~ 146 (148)
+|.++..+
T Consensus 83 ~v~~a~~~ 90 (282)
T 3pgw_A 83 RIQYAKTD 90 (282)
T ss_pred EEEEeccC
Confidence 99998764
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=2.6e-17 Score=108.86 Aligned_cols=80 Identities=24% Similarity=0.408 Sum_probs=70.7
Q ss_pred CCCCcceEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 032066 62 YAETDFKLFVGNLSWSV---------TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 132 (148)
.....++|||+|||..+ ++++|+++|++||.|..+.++. ++|+|||+|.+.++|+.|+..|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34567899999999998 7999999999999999999874 37899999999999999999999999
Q ss_pred e------------CCeEEEEEeccCCC
Q 032066 133 L------------EGRAMRVSLAQGRR 147 (148)
Q Consensus 133 i------------~g~~l~v~~~~~~~ 147 (148)
+ .|+.|.|+|+.++.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999998654
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=3.6e-17 Score=108.32 Aligned_cols=79 Identities=28% Similarity=0.477 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 63 AETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 63 ~~~~~~l~i~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
..++++|||+|||+ ++++++|+++|++||.|..+.+..++ +|+|||+|.+.++|++|+..|+|..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34678999999999 99999999999999999999998663 7899999999999999999999999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.++
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98754
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.71 E-value=6.7e-17 Score=94.52 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=69.6
Q ss_pred CcceEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEEEcCCC--CCceeEEEEEecCHHHHHHHHHHhCCce
Q 032066 65 TDFKLFVGNL--SWSVT--------TESLTQAFQEYGNVVGARVLYDGES--GRSRGYGFVCYSTKAEMETALESLNGVE 132 (148)
Q Consensus 65 ~~~~l~i~nl--p~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 132 (148)
+++.|.|.|+ |..+. +++|++.|++||.|.++.+++++.+ +.++|+|||+|.+.++|++|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 44443 3689999999999999999877654 3578999999999999999999999999
Q ss_pred eCCeEEEEEeccC
Q 032066 133 LEGRAMRVSLAQG 145 (148)
Q Consensus 133 i~g~~l~v~~~~~ 145 (148)
++|+.|++.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999754
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=8.6e-18 Score=106.81 Aligned_cols=83 Identities=29% Similarity=0.512 Sum_probs=71.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
....+++|||+|||.++++++|+++|.+||.+..+ ++.+..++.++|+|||+|.+.++|++|++ |||..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 45578899999999999999999999999876552 23333556788999999999999999995 99999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.++
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98764
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.69 E-value=2.4e-16 Score=93.86 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=69.2
Q ss_pred CcceEEEcCCCC--CC---CHHHHHHHHhhcCCeeEEEEEEcCC----CCCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 032066 65 TDFKLFVGNLSW--SV---TTESLTQAFQEYGNVVGARVLYDGE----SGRSRGYGFVCYSTKAEMETALESLNGVELEG 135 (148)
Q Consensus 65 ~~~~l~i~nlp~--~~---~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g 135 (148)
++++|+|.|+-. .+ .+++|++.|++||.|..+.++.++. ++.++|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999842 22 3689999999999999999998754 34567999999999999999999999999999
Q ss_pred eEEEEEecc
Q 032066 136 RAMRVSLAQ 144 (148)
Q Consensus 136 ~~l~v~~~~ 144 (148)
+.|++.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=3.7e-16 Score=105.34 Aligned_cols=79 Identities=29% Similarity=0.512 Sum_probs=71.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 141 (148)
.....++|||+|||+++++++|+++|++||.|..+.+.+ .+|+|||+|.+.++|..|+..++|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345678999999999999999999999999999998853 36899999999999999999999999999999999
Q ss_pred eccCC
Q 032066 142 LAQGR 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
++.+.
T Consensus 92 ~a~~~ 96 (261)
T 3sde_A 92 FATHG 96 (261)
T ss_dssp ECCCS
T ss_pred ecccC
Confidence 98764
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.69 E-value=5e-17 Score=105.23 Aligned_cols=76 Identities=29% Similarity=0.499 Sum_probs=70.4
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 66 DFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 66 ~~~l~i~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
+++|||+|||+ .+++++|+++|++||.|..+.+..++ +|+|||+|.+.++|+.|+..|||..++|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 56899999999 99999999999999999999887653 7799999999999999999999999999999999987
Q ss_pred CC
Q 032066 145 GR 146 (148)
Q Consensus 145 ~~ 146 (148)
++
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.68 E-value=4e-17 Score=95.36 Aligned_cols=72 Identities=19% Similarity=0.318 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 032066 71 VGNLSWSVTTESLTQAF------------QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138 (148)
Q Consensus 71 i~nlp~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 138 (148)
..|||..+++++|++.| ++||.|..+.++++.. +.++|+|||+|.+.++|++|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45667777777776665 9999999999988743 6789999999999999999999999999999999
Q ss_pred EEEec
Q 032066 139 RVSLA 143 (148)
Q Consensus 139 ~v~~~ 143 (148)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 200
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.67 E-value=1.6e-16 Score=94.56 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=49.3
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCC---CCCCCcceEEEcCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP---LYAETDFKLFVGNLSWS 77 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~---~~~~~~~~l~i~nlp~~ 77 (148)
.|.+|+|++++ +.++|||||+|.+.++|++|+..|++..+.|++|.|.++........ .......+|||+|||++
T Consensus 31 ~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~ 108 (115)
T 4f25_A 31 NILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPG 108 (115)
T ss_dssp CEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-----------------------
T ss_pred CEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCC
Confidence 47899999995 45899999999999999999999999999999999999876544322 22334567999999999
Q ss_pred CCHH
Q 032066 78 VTTE 81 (148)
Q Consensus 78 ~~~~ 81 (148)
+|++
T Consensus 109 ~T~~ 112 (115)
T 4f25_A 109 STRA 112 (115)
T ss_dssp ----
T ss_pred cccc
Confidence 9876
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=9.7e-16 Score=96.93 Aligned_cols=75 Identities=19% Similarity=0.539 Sum_probs=65.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEY----G-------NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 133 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i 133 (148)
+.++|||+|||+++++++|+++|++| | .|..+.+. .++|+|||+|.+.++|+.|+ .+||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56799999999999999999999999 6 55555553 24789999999999999999 7999999
Q ss_pred CCeEEEEEeccCC
Q 032066 134 EGRAMRVSLAQGR 146 (148)
Q Consensus 134 ~g~~l~v~~~~~~ 146 (148)
+|+.|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999997654
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=1.6e-15 Score=97.91 Aligned_cols=75 Identities=19% Similarity=0.545 Sum_probs=64.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEY----G-------NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 133 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i 133 (148)
.+++|||+|||+++++++|+++|++| | .|..+.+ +.++|+|||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46799999999999999999999999 4 4444444 235789999999999999999 7999999
Q ss_pred CCeEEEEEeccCC
Q 032066 134 EGRAMRVSLAQGR 146 (148)
Q Consensus 134 ~g~~l~v~~~~~~ 146 (148)
+|+.|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998654
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-14 Score=83.74 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 032066 76 WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147 (148)
Q Consensus 76 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 147 (148)
..+++++|+++|++||.|..+.++ +.++|||||+|.+.++|+.|+..+++ +.|++|+|+|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 568999999999999999999887 35789999999999999999997554 679999999998764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.61 E-value=6.7e-15 Score=87.03 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=65.6
Q ss_pred CCcceEEEcCCCCCCC----------HHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 032066 64 ETDFKLFVGNLSWSVT----------TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 133 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i 133 (148)
.++++|.|.|+-.... +++|++.|++||.|..+.+.++. ++|++||+|.+.++|++|+..|||.++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4566888988844322 35889999999999999886542 489999999999999999999999999
Q ss_pred CCeEEEEEeccC
Q 032066 134 EGRAMRVSLAQG 145 (148)
Q Consensus 134 ~g~~l~v~~~~~ 145 (148)
+|+.|.+.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999753
No 205
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.57 E-value=8.4e-15 Score=84.76 Aligned_cols=54 Identities=22% Similarity=0.487 Sum_probs=51.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
.|.+|++++++.+|+++|||||+|.+.++|++|++.|++..+.|++|.|.|+.+
T Consensus 45 ~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 45 EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 478999999999999999999999999999999999999999999999999853
No 206
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.56 E-value=2.8e-14 Score=98.96 Aligned_cols=78 Identities=24% Similarity=0.344 Sum_probs=65.7
Q ss_pred CCCCCcceEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC---C
Q 032066 61 LYAETDFKLFVGN--LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE---G 135 (148)
Q Consensus 61 ~~~~~~~~l~i~n--lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~---g 135 (148)
....++.+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|+..|||..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3455777999999 588999999999999999998876642 4789999999999999999999999883 4
Q ss_pred e--EEEEEecc
Q 032066 136 R--AMRVSLAQ 144 (148)
Q Consensus 136 ~--~l~v~~~~ 144 (148)
+ .+.+.++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 67777764
No 207
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=82.80 Aligned_cols=58 Identities=26% Similarity=0.484 Sum_probs=51.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENL-DGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|++|++++++.+|.++|||||+|.+.++|++|++.+ ++..+.|++|.|.++.++...
T Consensus 28 ~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 28 QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence 3789999999999999999999999999999999876 456799999999999765443
No 208
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.52 E-value=1.1e-14 Score=82.87 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=49.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.++++++++.+|+++|||||+|.+.++|++|++.+++..+.|++|.|.++.++...
T Consensus 29 ~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 29 DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHH 86 (90)
T ss_dssp CCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC------
T ss_pred ceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCccc
Confidence 4789999999999999999999999999999999999999999999999998765543
No 209
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.51 E-value=6.7e-14 Score=82.44 Aligned_cols=55 Identities=18% Similarity=0.324 Sum_probs=51.6
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
.|++|+|++|+.||+++|||||+|.+.++|++|++.||+..+.|++|.|.++...
T Consensus 32 ~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 32 EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4789999999999999999999999999999999999999999999999998643
No 210
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=81.21 Aligned_cols=53 Identities=26% Similarity=0.574 Sum_probs=49.1
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----eecCcEEEEeecCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGR----EYLGRILRVNFSDK 54 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~~~~i~v~~~~~ 54 (148)
|.+|++++|+.||+++|||||+|.+.++|++|++.+++. .+.|++|.|.|+..
T Consensus 38 v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 38 VNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp GGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 678999999999999999999999999999999999986 48999999999864
No 211
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.46 E-value=2.9e-13 Score=75.62 Aligned_cols=55 Identities=31% Similarity=0.640 Sum_probs=51.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
.|.++++++++.+|+++|||||+|.+.++|+.|+..+++..+.|++|.|.++.++
T Consensus 27 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 27 SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 3788999999999999999999999999999999999999999999999998764
No 212
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=7e-13 Score=74.09 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=61.3
Q ss_pred CcceEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe
Q 032066 65 TDFKLFVGNLS----WSVTT----ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR 136 (148)
Q Consensus 65 ~~~~l~i~nlp----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~ 136 (148)
+..+|.|.-.| .++.. .+|.+.|.+||.|..+++..+. +||+|.+.++|.+|+. |||..++|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 44577776665 23434 6788999999999999998652 8999999999999999 999999999
Q ss_pred EEEEEeccCC
Q 032066 137 AMRVSLAQGR 146 (148)
Q Consensus 137 ~l~v~~~~~~ 146 (148)
.|+|+++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998875
No 213
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.3e-13 Score=77.64 Aligned_cols=58 Identities=29% Similarity=0.516 Sum_probs=53.6
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|++++++.++.++|||||+|.+.++|++|+..|++..+.|++|.|.++.+....
T Consensus 41 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 41 SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 4789999999999999999999999999999999999999999999999999776544
No 214
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.1e-13 Score=77.97 Aligned_cols=59 Identities=36% Similarity=0.595 Sum_probs=54.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 59 (148)
.|++|++++++.+++++|||||+|.+.++|+.|+..|++..+.|++|.|.++.+.....
T Consensus 38 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 38 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCC
Confidence 47899999999999999999999999999999999999999999999999998766544
No 215
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.44 E-value=3.3e-13 Score=76.10 Aligned_cols=55 Identities=29% Similarity=0.514 Sum_probs=50.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
.|.++++++++.+|.++|||||+|.+.++|+.|+..+++..+.|++|.|.++.++
T Consensus 32 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 32 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 4789999999989999999999999999999999999999999999999998653
No 216
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=6.5e-13 Score=76.68 Aligned_cols=58 Identities=34% Similarity=0.425 Sum_probs=53.6
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|++|++++++.+++++|||||+|.+.++|+.|+..+++..+.|++|.|.++..+...
T Consensus 34 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 34 PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 4788999999889999999999999999999999999999999999999999876654
No 217
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.44 E-value=4.2e-13 Score=77.08 Aligned_cols=57 Identities=28% Similarity=0.610 Sum_probs=52.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|.+|++++++.+|+++|||||+|.+.++|+.|+..+++..+.|+.|.|.++.++..
T Consensus 28 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 28 PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 478999999999999999999999999999999999999999999999999976653
No 218
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.44 E-value=1.9e-13 Score=79.22 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=50.6
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC-cEEEEeecCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLG-RILRVNFSDK 54 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~-~~i~v~~~~~ 54 (148)
.|.+|++++++.||+++|||||+|.+.++|++|+..|++..+.| ++|.|.++.+
T Consensus 38 ~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 38 KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 47899999999999999999999999999999999999999999 9999998753
No 219
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.44 E-value=6.9e-13 Score=78.65 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=54.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 59 (148)
.|++|++++++.+++++|||||+|.+.++|++|+..|++..+.|++|.|.++.++....
T Consensus 51 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 51 NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 109 (115)
T ss_dssp CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCC
T ss_pred CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcCC
Confidence 47899999999899999999999999999999999999999999999999997665543
No 220
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.9e-13 Score=75.87 Aligned_cols=58 Identities=26% Similarity=0.562 Sum_probs=52.9
Q ss_pred Cccee-EeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKL-TVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.++ ++++++.+|.++|||||+|.+.++|++|+..|++..+.|++|.|.++.++...
T Consensus 31 ~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 31 VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 36788 99999889999999999999999999999999999999999999999766544
No 221
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.8e-13 Score=75.76 Aligned_cols=58 Identities=31% Similarity=0.556 Sum_probs=53.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|++++++.+++++|||||+|.+.++|++|+..+++..+.|++|.|.++.++...
T Consensus 31 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 31 KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 4789999999989999999999999999999999999999999999999999776544
No 222
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.43 E-value=1.2e-12 Score=77.66 Aligned_cols=58 Identities=29% Similarity=0.526 Sum_probs=53.3
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|++|++++++.+++++|||||+|.+.++|++|+..|++..+.|+.|.|.++......
T Consensus 41 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 41 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 4789999999989999999999999999999999999999999999999998766543
No 223
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=75.86 Aligned_cols=58 Identities=21% Similarity=0.516 Sum_probs=52.9
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 59 (148)
.|.+|++++++.+++++|||||+|.+.++|++|+. +++..+.|++|.|.++.++....
T Consensus 36 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 36 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCCC
T ss_pred CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcccC
Confidence 47899999999999999999999999999999998 99999999999999998765543
No 224
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=1e-12 Score=76.46 Aligned_cols=56 Identities=23% Similarity=0.491 Sum_probs=51.8
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|.+|++++++.+|+++|||||+|.+.++|++|+ .+++..+.|++|.|.++......
T Consensus 41 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 41 IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence 678999999999999999999999999999999 79999999999999999766544
No 225
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-12 Score=77.57 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=66.5
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecC-HHHHHHHHHHhC--CceeCCeEE
Q 032066 63 AETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST-KAEMETALESLN--GVELEGRAM 138 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~-~~~a~~a~~~l~--~~~i~g~~l 138 (148)
....+.|+|+||++. ++.++|+++|++||.|.++.+..+.. .|||+|.+ ++.|..|+..++ +..|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 346778999999999 99999999999999999999876643 59999999 899999999995 688999888
Q ss_pred EEEecc
Q 032066 139 RVSLAQ 144 (148)
Q Consensus 139 ~v~~~~ 144 (148)
.+++..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887653
No 226
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.41 E-value=5.9e-13 Score=74.71 Aligned_cols=53 Identities=38% Similarity=0.678 Sum_probs=49.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
.|.++.+++++.+|+++|||||+|.+.++|+.|+..+++..+.|++|.|.++.
T Consensus 33 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 33 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 47889999999999999999999999999999999999999999999999863
No 227
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8.4e-13 Score=76.63 Aligned_cols=58 Identities=36% Similarity=0.642 Sum_probs=53.3
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|++|++++++.+++++|||||+|.+.++|..|+..|++..+.|++|.|.++......
T Consensus 38 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 38 QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 4789999999999999999999999999999999999999999999999998766544
No 228
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=75.55 Aligned_cols=56 Identities=20% Similarity=0.446 Sum_probs=51.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|.+|+++.++ +|+++|||||+|.+.++|.+|+..|++..+.|++|.|.++.++..
T Consensus 43 ~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 43 TVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp CEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred CeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 47899999998 999999999999999999999999999999999999999876543
No 229
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6.9e-13 Score=77.14 Aligned_cols=59 Identities=29% Similarity=0.423 Sum_probs=53.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 59 (148)
.|.+|.+++++.+++++|||||+|.+.++|++|+..|++..+.|++|.|.++.......
T Consensus 39 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 39 RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDL 97 (103)
T ss_dssp CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSCC
T ss_pred CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCCC
Confidence 47889999999999999999999999999999999999999999999999998665443
No 230
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.39 E-value=7e-13 Score=77.82 Aligned_cols=55 Identities=33% Similarity=0.611 Sum_probs=51.6
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
.|.+|++++++.+|+++|||||+|.+.++|..|+..+++..+.|++|.|.++.++
T Consensus 52 ~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 52 RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 4789999999999999999999999999999999999999999999999998755
No 231
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.2e-12 Score=74.92 Aligned_cols=54 Identities=35% Similarity=0.623 Sum_probs=50.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
.|.+|.+++++.+++++|||||+|.+.++|++|+..|++..+.|++|.|.++..
T Consensus 41 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 41 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 478999999999999999999999999999999999999999999999998753
No 232
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-12 Score=77.07 Aligned_cols=56 Identities=30% Similarity=0.615 Sum_probs=51.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|++|.+++++ +|+++|||||+|.+.++|++|+..|++..+.|++|.|.++..+..
T Consensus 33 ~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 33 PISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp CCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred CEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 47899999998 999999999999999999999999999999999999999876553
No 233
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=81.87 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=51.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
.|.+|++++|+.+|+++|||||+|.+.++|++|+..|++..+.|++|.|.++.+
T Consensus 83 ~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 83 DVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred cEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 478999999999999999999999999999999999999999999999998853
No 234
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=7.6e-13 Score=77.32 Aligned_cols=55 Identities=24% Similarity=0.509 Sum_probs=51.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
.|.+|.+++++.+|.++|||||+|.+.++|+.|+..+++..+.|++|.|.++..+
T Consensus 49 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 49 EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 4789999999999999999999999999999999999999999999999998654
No 235
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.4e-12 Score=76.09 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=53.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|++++++.++.++|||||+|.+.++|++|+..|++..+.|++|.|.++......
T Consensus 41 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 41 PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 4788999999989999999999999999999999999999999999999999776544
No 236
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=2.4e-12 Score=75.76 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=53.3
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhC------CCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLD------GREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|++++++.+|.++|||||+|.+.++|..|+..++ +..+.|++|.|.++.+....
T Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 41 DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 47899999999999999999999999999999999999 99999999999999766544
No 237
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=74.66 Aligned_cols=53 Identities=19% Similarity=0.505 Sum_probs=49.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
.|.+|++++++.+++++|||||+|.+.++|++|+..+++..+.|++|.|.++.
T Consensus 42 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 42 KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 47889999999999999999999999999999999999999999999999863
No 238
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.38 E-value=1e-12 Score=79.52 Aligned_cols=56 Identities=38% Similarity=0.678 Sum_probs=52.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|.+|++++++.+|+++|||||+|.+.++|++|+..|++..+.|++|.|.++..++
T Consensus 72 ~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 72 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 47899999999999999999999999999999999999999999999999987654
No 239
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=6.7e-13 Score=76.92 Aligned_cols=70 Identities=26% Similarity=0.355 Sum_probs=56.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCC-----CCCCcceEEEcCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL-----YAETDFKLFVGNLS 75 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~l~i~nlp 75 (148)
.|.+|+++++ ++|||||+|.+.++|+.|+..|++..+.|++|.|.++......... ......+|||+||+
T Consensus 26 ~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 26 PLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 3678888887 7899999999999999999999999999999999998765533221 11236689999986
No 240
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-12 Score=73.58 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=49.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|.+|+++++ .+|+++|||||+|.+.++|++|+. +++..+.|+.|.|.++....
T Consensus 35 ~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 35 KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 4789999999 799999999999999999999999 99999999999999987553
No 241
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.38 E-value=1.6e-12 Score=73.55 Aligned_cols=55 Identities=25% Similarity=0.511 Sum_probs=50.9
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|.++++++++.+|+++|||||+|.+.++|++|+ .+++..+.|++|.|.++....
T Consensus 32 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 32 SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTNR 86 (89)
T ss_dssp CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTTS
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCCC
Confidence 4788999999989999999999999999999999 899999999999999987643
No 242
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.37 E-value=3.1e-13 Score=80.14 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=65.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCCH
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTT 80 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~~ 80 (148)
.|.+|.++++ +.++|||||+|.+.++|..|+..|++..+.|+.|.|.++.+.... .+++...++
T Consensus 34 ~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~-------------~~~~~~~~~ 97 (115)
T 3lqv_A 34 PIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF-------------QKMDTKKKE 97 (115)
T ss_dssp CEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT-------------TTSCHHHHH
T ss_pred CeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh-------------hhhhHhHhH
Confidence 3678888865 456999999999999999999999999999999999998754332 567888899
Q ss_pred HHHHHHHhhcCC
Q 032066 81 ESLTQAFQEYGN 92 (148)
Q Consensus 81 ~~l~~~f~~~g~ 92 (148)
+++.++|++||.
T Consensus 98 ~~l~~~~~~~g~ 109 (115)
T 3lqv_A 98 EQLKLLKEKYGI 109 (115)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC
Confidence 999999999984
No 243
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.6e-12 Score=74.86 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=52.5
Q ss_pred CcceeEeeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRE---TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 59 (148)
.|++|++++++. +++++|||||+|.+.++|++|+..|++..+.|++|.|.++.......
T Consensus 31 ~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 31 AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPA 92 (98)
T ss_dssp CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCCC
T ss_pred CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCCC
Confidence 478899999887 66999999999999999999999999999999999999997665443
No 244
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.37 E-value=2.5e-12 Score=75.12 Aligned_cols=58 Identities=29% Similarity=0.360 Sum_probs=53.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee---cCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREY---LGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~~~~i~v~~~~~~~~~ 58 (148)
.|.+|++++++.+|+++|||||+|.+.++|.+|+..|++..+ .+++|.|.++......
T Consensus 39 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 39 KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 478999999999999999999999999999999999999987 8999999999776544
No 245
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=75.02 Aligned_cols=48 Identities=33% Similarity=0.614 Sum_probs=46.4
Q ss_pred eEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeec
Q 032066 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52 (148)
Q Consensus 5 i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 52 (148)
+++++++.+|+++|||||+|.+.++|+.|++.|++..+.|++|.|+++
T Consensus 51 v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 51 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred EEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 999999999999999999999999999999999999999999999986
No 246
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.37 E-value=1.4e-12 Score=76.65 Aligned_cols=56 Identities=29% Similarity=0.465 Sum_probs=51.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|.+|++++++.+|.++|||||+|.+.++|..|+..|++..+.|++|.|.++....
T Consensus 52 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 52 EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 37889999999999999999999999999999999999999999999999986543
No 247
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.9e-12 Score=74.60 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=50.5
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
|.++.++.++.+|+++|||||+|.+.++|++|+..+++..+.|++|.|+++..+.
T Consensus 42 v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 42 IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp CTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred ccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 5678899998999999999999999999999999999999999999999987543
No 248
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=3e-12 Score=74.87 Aligned_cols=59 Identities=25% Similarity=0.400 Sum_probs=53.4
Q ss_pred CcceeEeeec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYD-RETGRSRGFAFVTMSTVEDCNAVIENL-DGREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~i~v~~~~~~~~~~ 59 (148)
.|++|+++++ +.++.++|||||+|.+.++|++|+..+ ++..+.|++|.|.++.......
T Consensus 41 ~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 41 ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCCC
T ss_pred CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCCC
Confidence 4788999999 789999999999999999999999999 9999999999999998765543
No 249
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-12 Score=75.97 Aligned_cols=56 Identities=36% Similarity=0.688 Sum_probs=52.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|.++++++++.+|.++|||||+|.+.++|+.|+..+++..+.|++|.|.++....
T Consensus 34 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 34 PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 47899999999999999999999999999999999999999999999999987654
No 250
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.36 E-value=3.3e-12 Score=78.18 Aligned_cols=58 Identities=26% Similarity=0.504 Sum_probs=53.6
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|++|++++++.+|+++|||||+|.+.++|.+|+..+++..+.|+.|.|.++......
T Consensus 68 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 68 PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 4789999999999999999999999999999999999999999999999999766544
No 251
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=74.81 Aligned_cols=55 Identities=16% Similarity=0.468 Sum_probs=51.2
Q ss_pred cc-eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcE----EEEeecCCCC
Q 032066 2 LS-KLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI----LRVNFSDKPK 56 (148)
Q Consensus 2 i~-~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~----i~v~~~~~~~ 56 (148)
|. ++++++++.+|+++|||||+|.+.++|++|+..|++..+.|+. |.|.|+....
T Consensus 36 i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 36 TVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp CCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred cceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 66 8999999999999999999999999999999999999999999 9999987654
No 252
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=75.38 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=52.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCe-ecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE-YLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|++++++ +|.++|||||+|.+.++|..|+..+++.. +.|++|.|.++......
T Consensus 36 ~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 36 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp TEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred CeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 47899999998 99999999999999999999999999999 99999999998765543
No 253
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.36 E-value=2.4e-12 Score=80.45 Aligned_cols=58 Identities=33% Similarity=0.517 Sum_probs=53.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|++|++++++.+|+++|||||+|.+.++|..|+..|++..+.|++|.|.++.+..+.
T Consensus 96 ~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 96 RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 4789999999989999999999999999999999999999999999999999866544
No 254
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4e-12 Score=73.73 Aligned_cols=56 Identities=29% Similarity=0.508 Sum_probs=51.5
Q ss_pred ceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 3 SKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 3 ~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.++++++++.+++++|||||+|.+.++|++|+..|++..+.|++|.|.++.++...
T Consensus 40 ~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 40 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 47899999989999999999999999999999999999999999999999766543
No 255
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.4e-12 Score=74.89 Aligned_cols=55 Identities=29% Similarity=0.548 Sum_probs=51.0
Q ss_pred eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 4 KLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 4 ~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|++++++.+|+++|||||+|.+.++|++|+..|++..+.|++|.|.++......
T Consensus 52 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 52 MIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp SEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred CEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 6999999899999999999999999999999999999999999999998776543
No 256
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.35 E-value=3.7e-12 Score=74.25 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=49.2
Q ss_pred CcceeEeeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 1 MLSKLTVLYDRET-GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 1 ~i~~i~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
+|++|.|++++.+ ++++|+|||+|.+.++|.+|+..|||..+.|++|.+.++..
T Consensus 39 ~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 39 KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 4789999998754 68999999999999999999999999999999999998853
No 257
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=73.07 Aligned_cols=56 Identities=16% Similarity=0.358 Sum_probs=50.9
Q ss_pred CcceeEeeecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGR-SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|.++.+++++.++. ++|||||+|.+.++|++|+..+++..+.|++|.|.++.++.
T Consensus 30 ~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 30 KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 377899999987766 99999999999999999999999999999999999987654
No 258
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.35 E-value=3.7e-12 Score=74.26 Aligned_cols=58 Identities=33% Similarity=0.473 Sum_probs=52.3
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC---cEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLG---RILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~---~~i~v~~~~~~~~~~ 59 (148)
.|++|++++++ +|.++|||||+|.+.++|++|+..|++..+.+ ++|.|.++.......
T Consensus 41 ~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 41 VIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKESG 101 (105)
T ss_dssp CEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCCS
T ss_pred CeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcccC
Confidence 47899999997 89999999999999999999999999999988 999999998766543
No 259
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.35 E-value=5.4e-12 Score=75.77 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=52.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 59 (148)
.|++|++++++ +|+++|||||+|.+.++|..|+..+++..+.|++|.|.++.......
T Consensus 61 ~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 61 TLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLE 118 (124)
T ss_dssp CCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCCC
T ss_pred CeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCCC
Confidence 47899999998 99999999999999999999999999999999999999987655443
No 260
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4.9e-12 Score=73.50 Aligned_cols=57 Identities=25% Similarity=0.518 Sum_probs=51.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 59 (148)
.|.+|+++++ +|.++|||||+|.+.++|+.|+..|++..+.|++|.|.++.++....
T Consensus 41 ~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 41 TITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 97 (103)
T ss_dssp CEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCC
T ss_pred CEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCC
Confidence 4788999998 89999999999999999999999999999999999999998765543
No 261
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.34 E-value=8.1e-13 Score=74.96 Aligned_cols=56 Identities=32% Similarity=0.650 Sum_probs=48.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|+++++++++.+|+++|||||+|.+.+ |.+|+..+++..+.|++|.|.++.....
T Consensus 27 ~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 27 KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 4789999999999999999999999999 9999999999999999999999876543
No 262
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.1e-12 Score=73.96 Aligned_cols=56 Identities=16% Similarity=0.385 Sum_probs=51.3
Q ss_pred cceeEeeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 2 LSKLTVLYDRET-GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 2 i~~i~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|.+|++++++.+ |+++|||||+|.+.++|++|+ .+++..+.|++|.|.++..+...
T Consensus 41 i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 41 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCC
T ss_pred ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCC
Confidence 578999999887 999999999999999999999 89999999999999999776544
No 263
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.33 E-value=2.4e-12 Score=74.94 Aligned_cols=51 Identities=18% Similarity=0.301 Sum_probs=47.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeec
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 52 (148)
+|.+|+|++++ +++++|||||+|.+.++|.+|+..|||..+.|++|.|.++
T Consensus 53 ~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 53 EVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp CEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred ceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 47899999986 5899999999999999999999999999999999999986
No 264
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.33 E-value=1.3e-12 Score=71.65 Aligned_cols=51 Identities=24% Similarity=0.441 Sum_probs=47.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeec
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 52 (148)
.|.++++++++.+|+++|||||+|.+.++|++|++ +++..+.|+++.|.++
T Consensus 25 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 25 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 47889999999899999999999999999999998 9999999999999864
No 265
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.33 E-value=8.2e-12 Score=74.93 Aligned_cols=57 Identities=21% Similarity=0.517 Sum_probs=51.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|++|++++++.+|.++|||||+|.+.++|..|+ .+++..+.|+.|.|.++......
T Consensus 62 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 118 (124)
T 2jwn_A 62 SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMPG 118 (124)
T ss_dssp CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCSS
T ss_pred CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCCC
Confidence 4789999999999999999999999999999999 79999999999999998765443
No 266
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.33 E-value=4.6e-12 Score=74.11 Aligned_cols=52 Identities=31% Similarity=0.438 Sum_probs=49.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
.|++|++++++ +|+++|||||+|.+.++|++|+..|++..+.|++|.|.++.
T Consensus 55 ~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 55 TLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 47899999998 99999999999999999999999999999999999999874
No 267
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.32 E-value=3.3e-12 Score=73.12 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=48.8
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
|.++.++.++.+|+++|||||+|.+.++|++|+..+++..+.|++|.|.++.
T Consensus 42 i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 42 IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred ccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 6678899999999999999999999999999999999999999999999875
No 268
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=72.89 Aligned_cols=56 Identities=23% Similarity=0.473 Sum_probs=50.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|++|++++++ +|+++|||||+|.+.++|+.|+..|++..+.|++|.|.++.....
T Consensus 41 ~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 41 VVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALP 96 (114)
T ss_dssp CEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCCC
T ss_pred CeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCC
Confidence 47889999997 699999999999999999999999999999999999999865433
No 269
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=5.9e-12 Score=70.70 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=61.4
Q ss_pred CCcceEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 032066 64 ETDFKLFVGNLSWS-----VTT----ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 134 (148)
Q Consensus 64 ~~~~~l~i~nlp~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~ 134 (148)
.+..+|.|.-++.. +.. .+|.+.|.+||.+..+++..++ +||+|.+.++|.+|+. |||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45568888887632 333 5688999999999999998662 9999999999999999 9999999
Q ss_pred CeEEEEEeccC
Q 032066 135 GRAMRVSLAQG 145 (148)
Q Consensus 135 g~~l~v~~~~~ 145 (148)
|+.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998654
No 270
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=8e-12 Score=71.71 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=48.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|++|++++++.+ +|||||+|.+.++|++|+..+++..+.|++|.|.++.+..
T Consensus 39 ~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 39 KVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp CEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred cEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 4788999999755 8999999999999999999999999999999999986554
No 271
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=8.4e-12 Score=74.05 Aligned_cols=55 Identities=29% Similarity=0.414 Sum_probs=50.6
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|++|++++++.+++++|||||+|.+.++|++|+..+++ .+.|++|.|.++....
T Consensus 43 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 43 DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTC
T ss_pred CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCC
Confidence 478999999999999999999999999999999999998 8999999999986543
No 272
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.31 E-value=8.7e-12 Score=77.73 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=53.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|++|+|++++.++.++|||||+|.+.++|++|+..|++..+.+++|.|.++.....
T Consensus 65 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 65 DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 478999999999999999999999999999999999999999999999999976544
No 273
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=73.81 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=52.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|++++++.+++++|||||+|.+.++|++|+.. ++..+.|++|.|.++.++...
T Consensus 42 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 42 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCC
T ss_pred CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCC
Confidence 478999999999999999999999999999999997 999999999999998766543
No 274
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=74.36 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=48.8
Q ss_pred cceeEeeecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 2 LSKLTVLYDR-ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 2 i~~i~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
|.+|++++++ .+|+++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++...
T Consensus 45 i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 45 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 5789999998 68999999999999999999999 79999999999999998654
No 275
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.30 E-value=6.3e-12 Score=71.91 Aligned_cols=52 Identities=31% Similarity=0.486 Sum_probs=48.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
.|++|++++++ +|+++|||||+|.+.++|++|+..|++..+.|++|.|.++.
T Consensus 42 ~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 42 PLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp CEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 47899999997 49999999999999999999999999999999999999875
No 276
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.30 E-value=4.4e-12 Score=76.34 Aligned_cols=57 Identities=25% Similarity=0.529 Sum_probs=52.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|.+|.+++++.++.++|||||+|.+.++|+.|+..|++..+.|+.|.|.++.....
T Consensus 48 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 48 EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 478899999999999999999999999999999999999999999999999865443
No 277
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.29 E-value=3.5e-12 Score=77.70 Aligned_cols=58 Identities=33% Similarity=0.517 Sum_probs=53.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|++++++.+++++|||||+|.+.++|++|+..|++..+.|++|.|.++......
T Consensus 73 ~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 73 RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 4789999999989999999999999999999999999999999999999999765543
No 278
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=1.1e-11 Score=72.98 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=49.8
Q ss_pred CcceeEeeecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETG---RSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|.+|++++++.++ +++|||||+|.+.++|++|+..|++..+.|++|.|.++..+.
T Consensus 44 ~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 44 KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 47889999987754 566999999999999999999999999999999999987654
No 279
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.29 E-value=3.2e-12 Score=76.06 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=48.8
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeec
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 52 (148)
|.+|++++++.+|+++|||||+|.+.++|++|+..|++..+.|++|.|+++
T Consensus 67 i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 67 VISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp EEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 778999999989999999999999999999999999999999999999986
No 280
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.29 E-value=1.1e-11 Score=72.73 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=50.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|++|++++++.+|+++|||||+|.+.++|.+|+..+ +..+.|+.|.|.++.....
T Consensus 51 ~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 51 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCCC
T ss_pred CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCCC
Confidence 4789999999999999999999999999999999965 5889999999999876543
No 281
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.5e-11 Score=72.94 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=51.9
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|++++++.+|+++|||||+|.+.++|+.|+.. ++..+.|++|.|.++.++...
T Consensus 53 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 53 KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCC
T ss_pred CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccC
Confidence 478999999999999999999999999999999996 999999999999998766543
No 282
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.28 E-value=1.6e-11 Score=80.74 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=59.8
Q ss_pred CCHHHHHHHHhhcCCeeEEEEEEcCC----CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 78 VTTESLTQAFQEYGNVVGARVLYDGE----SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 78 ~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
..+++|.+.|.+||.|..+.++.+.. ++.++|++||+|.+.++|++|+..|||..++|+.|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 35578999999999999999986543 34789999999999999999999999999999999999875
No 283
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.1e-11 Score=70.08 Aligned_cols=56 Identities=20% Similarity=0.468 Sum_probs=49.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|++|++++++.+ ++|||||+|.+.++|++|+..|++..+.|++|.|.++..+...
T Consensus 41 ~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 41 PCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp CEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred CEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 4788999998543 7899999999999999999999999999999999999876544
No 284
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=9.1e-12 Score=72.61 Aligned_cols=53 Identities=21% Similarity=0.483 Sum_probs=48.2
Q ss_pred CcceeEeeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRET--GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
+|++|+|++++.+ ++++|+|||+|.+.++|.+|+..|||..+.|++|.+.++.
T Consensus 41 ~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 41 LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 4789999998755 4789999999999999999999999999999999999874
No 285
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.28 E-value=6.5e-12 Score=76.82 Aligned_cols=52 Identities=38% Similarity=0.688 Sum_probs=48.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeec
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 52 (148)
.|+++++++++.+|+++|||||+|.+.++|++|+..+++..+.|++|.|.++
T Consensus 89 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 89 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4788999999999999999999999999999999999999999999999874
No 286
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.4e-11 Score=72.31 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=50.5
Q ss_pred cceeEee-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeecCcEEEEeecCCCCC
Q 032066 2 LSKLTVL-YDRETGRSRGFAFVTMSTVEDCNAVIENLD--GREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 2 i~~i~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~~~~i~v~~~~~~~~ 57 (148)
|.++.++ .++.+|.++|||||+|.+.++|..|+..++ +..+.|++|.|.++.+...
T Consensus 36 v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 36 VLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp EEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred ceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 7788888 788889999999999999999999999996 5899999999999976554
No 287
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=72.34 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=46.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
+|.+|+|++++ +|+++|||||+|.+.++|++|+ .+++..+.|+.|.|..+.
T Consensus 41 ~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 41 RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 47899999997 4999999999999999999999 599999999999998764
No 288
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.27 E-value=4.1e-12 Score=77.02 Aligned_cols=55 Identities=31% Similarity=0.568 Sum_probs=50.2
Q ss_pred cce--eEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----eecCcEEEEeecCCCCC
Q 032066 2 LSK--LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGR----EYLGRILRVNFSDKPKP 57 (148)
Q Consensus 2 i~~--i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~~~~i~v~~~~~~~~ 57 (148)
|++ |+|++|+.+|+++|||||+|.+. +|.+|+..+++. .+.|++|.|.++.+...
T Consensus 50 v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 50 LSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred cceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 544 99999999999999999999999 999999999999 99999999999876544
No 289
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=4.6e-12 Score=69.68 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=47.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeec
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 52 (148)
.|.++.+++++.+|+++|||||+|.+.++|+.|+..++ ..+.|+++.|+++
T Consensus 26 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 26 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 37889999999899999999999999999999999888 9999999999875
No 290
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=6.4e-12 Score=74.33 Aligned_cols=53 Identities=26% Similarity=0.490 Sum_probs=49.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
.|.+|++++++.+|+++|||||+|.+.++|++|+ .+++..+.|+.|.|.++..
T Consensus 51 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 51 KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4789999999999999999999999999999999 8999999999999998754
No 291
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.27 E-value=1.3e-11 Score=69.47 Aligned_cols=51 Identities=25% Similarity=0.458 Sum_probs=46.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeec
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 52 (148)
.|.++++++++.+|+++|||||+|.+.++|++|+. +++..+.|++|.|.++
T Consensus 37 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 37 EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 47899999999999999999999999999999997 5888899999999864
No 292
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.26 E-value=1.6e-11 Score=68.53 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=41.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeec
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 52 (148)
.|.++++.. ++|||||+|.+.++|++|+..||+..+.|++|.|.++
T Consensus 33 ~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 33 PLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356777754 6899999999999999999999999999999999977
No 293
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=4.5e-11 Score=69.35 Aligned_cols=56 Identities=25% Similarity=0.441 Sum_probs=49.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|++|++++++. .++|||||+|.+.++|++|+..|++..+.|++|.|.++..+...
T Consensus 41 ~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 41 KILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp CEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred CeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 478899999863 38999999999999999999999999999999999999776544
No 294
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.26 E-value=5.7e-12 Score=83.30 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=51.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
+|++|+|++++.+|+++|||||+|.+.++|++||..|++..|.|+.|.|.++..
T Consensus 96 ~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 96 DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred ceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 488999999999999999999999999999999999999999999999998753
No 295
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.25 E-value=1.4e-11 Score=70.08 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=49.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|++++++++ +|+++|||||+|.+.++|+.|+..|++..+.|++|.|.++.....
T Consensus 34 ~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 34 HVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp CEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred CEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 3678888874 789999999999999999999999999999999999999876544
No 296
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.7e-12 Score=72.79 Aligned_cols=53 Identities=11% Similarity=0.305 Sum_probs=48.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
.|.++++++++.+|+++|||||+|.+.++|+.|+..|++..+.|+.+.+.++.
T Consensus 31 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 31 KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 47889999999999999999999999999999999999999999988777653
No 297
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=4.4e-11 Score=69.18 Aligned_cols=55 Identities=24% Similarity=0.524 Sum_probs=48.9
Q ss_pred ceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 3 SKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 3 ~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
-+|+++++ .+++++|||||+|.+.++|++|+..+++..+.|++|.|.++.++...
T Consensus 40 g~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 40 TFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp SEEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred CEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 35677777 68999999999999999999999999999999999999999776543
No 298
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=4.8e-11 Score=69.25 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=50.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|++++++.+|+++|||||+|.+.++|+.|+. ++..+.|+.|.|.++......
T Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 41 EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCC
T ss_pred CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcC
Confidence 47899999999999999999999999999999998 577899999999998765543
No 299
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.24 E-value=1.7e-11 Score=77.08 Aligned_cols=57 Identities=30% Similarity=0.501 Sum_probs=52.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|.+|.+++++.+|.++|||||+|.+.++|..|+..|++..+.|++|.|.|+.....
T Consensus 98 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 98 EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 478999999999999999999999999999999999999999999999999865543
No 300
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=2.1e-11 Score=72.04 Aligned_cols=54 Identities=31% Similarity=0.519 Sum_probs=48.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee--------cCcEEEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREY--------LGRILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--------~~~~i~v~~~~~~ 55 (148)
.|.+|++++++ +|.++|||||+|.+.++|+.|+..|++..+ .++++.|.|+.++
T Consensus 51 ~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 51 QVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 47899999998 999999999999999999999999999998 5788999988743
No 301
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=72.11 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=47.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCc-EEEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGR-ILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~-~i~v~~~~~~ 55 (148)
.|.+|.++ +.+|+++|||||+|.+.++|..|+..|+|..+.|+ +|.|.++...
T Consensus 47 ~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 47 KITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred CEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 36788888 36899999999999999999999999999999998 9999998654
No 302
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.1e-11 Score=72.00 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=47.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
.|.+|++++++. |+++|||||+|.+.++|..|+. +++..+.|++|.|.+..
T Consensus 37 ~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 37 QVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp CEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 478999999986 9999999999999999999999 89999999999998753
No 303
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=1.9e-11 Score=73.54 Aligned_cols=52 Identities=25% Similarity=0.489 Sum_probs=45.4
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
|.+|.+. .+++++|||||+|.+.++|..|+..|+|..+.|++|.|.|+..+.
T Consensus 60 I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 60 ILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp EEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred eEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 5566553 367899999999999999999999999999999999999987654
No 304
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.22 E-value=1.8e-11 Score=72.89 Aligned_cols=50 Identities=28% Similarity=0.439 Sum_probs=47.0
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
|.+|++++++. |+++|||||+|.+.++|++|+. +++..+.|+.|.|.++.
T Consensus 47 v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 47 VAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp GGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred ceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 68999999975 9999999999999999999999 99999999999999874
No 305
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=1.7e-11 Score=72.81 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=48.1
Q ss_pred CcceeEeeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRE----TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
+|++|.|++++. +++++|++||+|.+.++|.+|+..|||..+.|++|.+.++.
T Consensus 51 ~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 51 AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 478999999865 45788999999999999999999999999999999999874
No 306
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.22 E-value=1.4e-11 Score=75.01 Aligned_cols=50 Identities=28% Similarity=0.424 Sum_probs=47.1
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
|.+|++++++. |+++|||||+|.+.++|++|+. +++..+.|++|.|.++.
T Consensus 74 v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 74 AAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp STTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred eeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 68999999986 9999999999999999999999 99999999999999874
No 307
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.5e-11 Score=70.43 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=47.8
Q ss_pred ceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 3 SKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 3 ~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.+|+|++++ +|+++|||||+|.+.++|++|+. +++..+.++.|.|.++.....
T Consensus 42 ~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 42 MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGT 94 (102)
T ss_dssp SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCC
T ss_pred eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCCC
Confidence 489999997 99999999999999999999995 799999999999998765543
No 308
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.6e-11 Score=72.61 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=46.9
Q ss_pred ceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 3 SKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 3 ~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
.+|+|++++ +|+++|||||+|.+.++|++|+.. ++..+.|++|.|.++...
T Consensus 44 ~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 44 NAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp TTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred CeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 679999998 999999999999999999999986 999999999999987643
No 309
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.7e-11 Score=71.09 Aligned_cols=56 Identities=27% Similarity=0.442 Sum_probs=47.0
Q ss_pred eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCC
Q 032066 4 KLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 4 ~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 59 (148)
++.+..+..+|+++|||||+|.+.++|+.|+..|++..+.|++|.|.++.......
T Consensus 54 ~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 54 GPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp SSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCCC
T ss_pred ceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCCC
Confidence 33344444488999999999999999999999999999999999999998765543
No 310
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.19 E-value=1e-11 Score=67.89 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=46.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeec
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 52 (148)
.|.++.+++++.+|.++|||||+|.+.++|+.|+. +++..+.|+++.|.++
T Consensus 25 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 25 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 37889999999999999999999999999999998 5889999999988764
No 311
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.17 E-value=1.1e-11 Score=71.71 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=45.8
Q ss_pred EeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 6 TVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 6 ~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.+++++.+|+++|||||+|.+.++|++|++ +++..+.|++|.|.++.....
T Consensus 47 ~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 47 LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCC
T ss_pred EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCC
Confidence 567777789999999999999999999998 999999999999999876543
No 312
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=71.65 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=47.2
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
|.+|++++++. |+++|||||+|.+.++|++|+. +++..+.|+.|.|.++..
T Consensus 41 v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 41 ENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp TTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred cceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 78899999986 9999999999999999999999 999999999999988753
No 313
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=68.55 Aligned_cols=47 Identities=19% Similarity=0.383 Sum_probs=41.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCc-EEEE
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGR-ILRV 49 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~-~i~v 49 (148)
.|.++.++ +.+|+++|||||+|.+.++|..|+..|++..+.|+ +|.|
T Consensus 33 ~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 33 KITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 36778877 45899999999999999999999999999999998 7765
No 314
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=6.8e-11 Score=69.36 Aligned_cols=53 Identities=26% Similarity=0.482 Sum_probs=47.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
.|++|++++++ +.++|||||+|.+.++|++|+..+++..+.|++|.|.++..+
T Consensus 55 ~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 55 KILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 47889999985 359999999999999999999999999999999999998654
No 315
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=8.2e-11 Score=68.43 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=46.9
Q ss_pred cce-eEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 2 LSK-LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 2 i~~-i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
|.+ |.++++ .+|+++|||||+|.+.++|++|+.. ++..+.++.|.|.++....
T Consensus 42 v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 42 VPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp EEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred cceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 344 888888 6999999999999999999999996 9999999999999886544
No 316
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.4e-10 Score=66.93 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=46.5
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|++|++.. ++.++|||||+|.+.++|++|+..|++..+.|++|.|.++......
T Consensus 49 v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 49 IRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp EEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCC
T ss_pred eEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCC
Confidence 66777754 4568999999999999999999999999999999999998765543
No 317
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.15 E-value=8.2e-11 Score=70.08 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=46.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCCeecCcEEEEeecCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMST----VED----CNAVIE--NLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~~~~~~i~v~~~~~ 54 (148)
.|.+++++.|+.||+++|||||+|.+ +++ |.+|+. .+++..+.|++|.|.+...
T Consensus 32 eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 32 EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 37899999999999999999999996 433 888988 7899999999999997653
No 318
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.75 E-value=4.3e-12 Score=75.30 Aligned_cols=53 Identities=30% Similarity=0.561 Sum_probs=49.3
Q ss_pred eEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 5 i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
|++++++.+++++|||||+|.+.++|++|+..|++..+.|++|.|.++.++..
T Consensus 45 v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 45 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 88999988999999999999999999999999999999999999999876544
No 319
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=2.9e-11 Score=72.53 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=46.5
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
|.++.++.+..+|+++|||||+|.+.++|.+|+. +++..+.|+.|.|.++..
T Consensus 52 v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 52 VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred ccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 5566677777899999999999999999999999 999999999999998753
No 320
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.13 E-value=9.7e-11 Score=74.46 Aligned_cols=55 Identities=29% Similarity=0.370 Sum_probs=50.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|++|.+++++ +|.++|||||+|.+.++|..|+..+++..+.|++|.|.++....
T Consensus 114 ~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 114 TLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp CCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred CeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 47899999998 99999999999999999999999999999999999999986543
No 321
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.4e-10 Score=67.30 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=45.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDG--REYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~~~~i~v~~~~~~~~~~ 59 (148)
+|++|+++++ +|||||+|.+.++|..|+..+++ ..+.|++|.|.++..+....
T Consensus 42 ~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 42 KVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp CEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCC
T ss_pred CEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCc
Confidence 4788898875 69999999999999999998764 78999999999997665443
No 322
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.6e-09 Score=62.06 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=64.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEY-----GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 138 (148)
...++|-+-|||..++...|+.+.+++ |.+..+.+..+ .+-|+|+|.+...|-+|.-.|+|.+|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346789999999999999999999999 99998887755 3359999999999999999999999999999
Q ss_pred EEE
Q 032066 139 RVS 141 (148)
Q Consensus 139 ~v~ 141 (148)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 875
No 323
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=4.2e-10 Score=65.93 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=45.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|+++++ +|||||+|.+.++|..|+..|++..+.|++|.|.++......
T Consensus 51 ~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 51 QIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp CEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 3677888776 689999999999999999999999999999999999766543
No 324
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.11 E-value=5.5e-11 Score=68.20 Aligned_cols=52 Identities=17% Similarity=0.395 Sum_probs=45.4
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
|.+|.+++ +|.++|||||+|.+.++|..|+..|++..+.|++|.|.++.+..
T Consensus 39 i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 39 ILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp EEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred EEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 55666663 57789999999999999999999999999999999999987654
No 325
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=5.4e-10 Score=64.08 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=43.9
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|.+|.+. +++|||||+|.+.++|.+|+..|++..+.|++|.|.++.++...
T Consensus 40 i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 40 IIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp EEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred EEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 5566663 57899999999999999999999999999999999998765543
No 326
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.09 E-value=1.4e-10 Score=66.36 Aligned_cols=51 Identities=20% Similarity=0.489 Sum_probs=44.5
Q ss_pred eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 4 KLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 4 ~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
+|.++ ..++.++|||||+|.+.++|..|+..+++..+.|++|.|.++.++.
T Consensus 42 ~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 42 EIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp EECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred cEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 34455 3578999999999999999999999999999999999999987654
No 327
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.09 E-value=2.4e-10 Score=65.66 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=42.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCe--ecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE--YLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~~~~i~v~~~~~~~ 56 (148)
+|+++++++ ++|||||+|.+.++|..|+..+++.. +.|++|.|.|+..+.
T Consensus 47 ~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 47 PISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 467788774 46899999999999999999998875 789999999997654
No 328
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.08 E-value=6.1e-11 Score=68.68 Aligned_cols=53 Identities=23% Similarity=0.490 Sum_probs=48.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|.++++++++ +|+++|||||+|.+.++|+.|+. ++..+.|+++.|.++....
T Consensus 35 ~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 35 SVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp CEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred CeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 47899999998 99999999999999999999998 8999999999998876443
No 329
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.08 E-value=2.7e-10 Score=81.81 Aligned_cols=56 Identities=21% Similarity=0.525 Sum_probs=52.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|++|.|+.++.+|.++|||||+|.+.++|..||..|++..|.|++|.|.++....
T Consensus 128 ~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 128 PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 47899999999999999999999999999999999999999999999999987543
No 330
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.08 E-value=6.7e-10 Score=66.77 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=45.2
Q ss_pred CcceeEeeecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCeecC--cEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGF-AFVTMSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~~--~~i~v~~~~~~~~~ 58 (148)
+|.+|.++.+. +|+ |||+|.+.++|..|++.|+|..+.+ ++|+|+|+......
T Consensus 54 ~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 54 TVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 109 (130)
T ss_dssp CEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCC
T ss_pred CEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCcee
Confidence 47788877642 577 9999999999999999999999988 99999999876543
No 331
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.08 E-value=4.8e-10 Score=69.89 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=45.2
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC--cEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~--~~i~v~~~~~~~~ 57 (148)
.|++|.+..+. ++|||||+|.+.++|+.|+..|+|..|.+ ++|.|+|+.....
T Consensus 72 ~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 72 TVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp CEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred CEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 47788886542 57899999999999999999999999965 9999999987643
No 332
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.07 E-value=3.1e-10 Score=66.66 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=42.4
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
|..+++.. +.++|||||+|.+.++|++|++.|++..+.|++|.|.++..+
T Consensus 56 v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 56 TTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred eEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 55666643 248899999999999999999999999999999999998654
No 333
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=7.8e-11 Score=70.49 Aligned_cols=50 Identities=18% Similarity=0.146 Sum_probs=45.0
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
|.+|.|++++ +|+++|||||+|.+.++|++|+.. ++..+.++.|.|..+.
T Consensus 54 v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 54 KEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp GGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEEC
T ss_pred cceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECC
Confidence 5789999994 999999999999999999999985 8999999998887653
No 334
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=8.8e-10 Score=63.67 Aligned_cols=53 Identities=13% Similarity=0.237 Sum_probs=44.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENL--DGREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~~~~i~v~~~~~~~~~~ 59 (148)
.|.+|.++++ +|||||+|.+.++|..|+..+ ++..+.|++|.|.|+..+....
T Consensus 41 ~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 41 KVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp CEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred CEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 3677777764 699999999999999999976 5678999999999998665543
No 335
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=5.6e-10 Score=66.23 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=45.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLD--GREYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~~~~i~v~~~~~~~~~~ 59 (148)
+|++|+++++ +|||||+|.+.++|.+|+..++ +..+.|++|.|.++..+....
T Consensus 57 ~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 57 KVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp CCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred CEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 4788888876 6999999999999999999887 468999999999997766544
No 336
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.3e-09 Score=64.20 Aligned_cols=52 Identities=31% Similarity=0.486 Sum_probs=44.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|.+|.| .++ .++|||||+|.+.++|.+|+..|++..+.|++|.|.++.+..
T Consensus 52 ~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 52 QIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 4678844 554 389999999999999999999999999999999999987644
No 337
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=8.5e-10 Score=62.33 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=43.3
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|++++++ +|||||+|.+.++|++|+..+++..+.|++|.|.++..+...
T Consensus 35 i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 35 VLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp EEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred EEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 5677776 589999999999999999999999999999999999776554
No 338
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.05 E-value=8.5e-11 Score=70.55 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=43.8
Q ss_pred eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 4 KLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 4 ~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
+|+|++++. |+++|||||+|.+.++|++|+. +++..+.|++|.|.++.
T Consensus 72 ~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 72 GITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSS 119 (126)
T ss_dssp EEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEEC
T ss_pred EEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECC
Confidence 899999986 9999999999999999999998 57799999999998764
No 339
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.05 E-value=3.6e-10 Score=66.65 Aligned_cols=49 Identities=16% Similarity=0.360 Sum_probs=43.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
+|++|.|.++. ++|+|||+|.+.++|.+|+..|||..+.|++|.+.++.
T Consensus 43 ~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 43 GVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp CCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 47788886653 58999999999999999999999999999999999874
No 340
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=4.2e-10 Score=65.37 Aligned_cols=53 Identities=9% Similarity=0.111 Sum_probs=43.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CeecCcEEEEeecCCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDG--REYLGRILRVNFSDKPKPKL 59 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~~~~i~v~~~~~~~~~~ 59 (148)
+|.+|.++++ +|||||+|.+.++|..|+..+++ ..+.|++|.|.|+..+....
T Consensus 41 ~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~~ 95 (104)
T 1wex_A 41 TICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITR 95 (104)
T ss_dssp CEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCC
T ss_pred CEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccccC
Confidence 3677777753 69999999999999999998765 45899999999997765443
No 341
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.04 E-value=5.6e-10 Score=62.86 Aligned_cols=48 Identities=25% Similarity=0.280 Sum_probs=42.4
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
|.++++. +++|||||+|.+.++|++|+..+++..+.|+++.|.++...
T Consensus 31 v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 31 LKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred eEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 5666663 57899999999999999999999999999999999998543
No 342
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=4e-10 Score=65.19 Aligned_cols=51 Identities=29% Similarity=0.415 Sum_probs=43.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--eecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGR--EYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~~~~i~v~~~~~~~~ 57 (148)
+|.+|.++++ +|||||+|.+.++|..|+..|++. .+.|++|.|.++...+.
T Consensus 42 ~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 42 VISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp CEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred CEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 4778888865 389999999999999999988754 59999999999975543
No 343
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.04 E-value=6.3e-11 Score=72.36 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=47.9
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
|.+|+|++++. |+++|||||+|.+.++|++|+ .+++..+.++.|.|.++.....
T Consensus 72 i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 72 PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 45899999975 999999999999999999999 6899999999999998765543
No 344
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=5.7e-10 Score=63.94 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=42.9
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeec--CcEEEEeecCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYL--GRILRVNFSDKPK 56 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~--~~~i~v~~~~~~~ 56 (148)
|++|.++.+ +|||||+|.+.++|++|+..|++..+. |++|.|.++.++.
T Consensus 44 v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 44 IRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp EEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred eeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 567777654 689999999999999999999999999 9999999987654
No 345
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=1.5e-09 Score=63.39 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=44.9
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC-----cEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLG-----RILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~-----~~i~v~~~~~~~~~ 58 (148)
.|++|+++++ |||||+|.+.++|++|+..|++..+.| ++|.|.++.+....
T Consensus 41 ~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 41 DVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp CEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred CEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 3677888776 899999999999999999999999999 99999998775543
No 346
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=4.6e-10 Score=64.78 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=42.1
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
|.+++++ +++|||||+|.+.++|..|+..|++..+.|++|.|.|+.+
T Consensus 54 i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 54 ILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred EEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 6677776 4679999999999999999999999999999999998864
No 347
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.02 E-value=2.2e-10 Score=70.28 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=42.3
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 12 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.+|+++|||||+|.+.++|..|+..|++..+.|++|.|.++......
T Consensus 87 ~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 87 KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC-
T ss_pred cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCc
Confidence 47899999999999999999999999999999999999999765443
No 348
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=9e-10 Score=63.12 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=42.3
Q ss_pred eEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 5 i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
++++.+ +++|||||+|.+.++|+.|+..|++..+.|++|.|.++.++.
T Consensus 48 ~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 48 LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 455554 688999999999999999999999999999999999987654
No 349
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=9.6e-10 Score=63.22 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=44.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
.|.+|+++++ +|||||+|.+.++|++|+..|++..+.|++|.|.++.++..
T Consensus 41 ~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 41 KAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 3667777744 69999999999999999999999999999999999976554
No 350
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.00 E-value=7.5e-10 Score=68.45 Aligned_cols=50 Identities=32% Similarity=0.492 Sum_probs=45.1
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
.|.+|+++++ ++|||||+|.+.++|..|+..|++..+.|++|.|.++.++
T Consensus 99 ~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 99 PLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 3678888876 5799999999999999999999999999999999998765
No 351
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.00 E-value=1.3e-09 Score=63.81 Aligned_cols=48 Identities=29% Similarity=0.591 Sum_probs=42.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 56 (148)
.|++|+++ +|||||+|.+.++|+.|+..|++..+.|++|.|.++....
T Consensus 57 ~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 57 PMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 36677777 6999999999999999999999999999999999987654
No 352
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.00 E-value=1.2e-09 Score=64.01 Aligned_cols=49 Identities=31% Similarity=0.587 Sum_probs=42.8
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|++|.+ ++|||||+|.+.++|+.|+..|++..+.|++|.|.++..++..
T Consensus 55 v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 55 VAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp CSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred eEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 556666 5799999999999999999999999999999999999765543
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.99 E-value=1.2e-09 Score=65.18 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=43.9
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
|.+|.+. .++|||||+|.+.++|..|+..|++..+.|++|.|.++.....
T Consensus 64 I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 64 IIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred EEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 5667764 5779999999999999999999999999999999999876543
No 354
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.98 E-value=3.4e-09 Score=61.32 Aligned_cols=49 Identities=20% Similarity=0.549 Sum_probs=42.4
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|.+|+++ +|||||+|.+.++|++|+..|++..+.|++|.|.++.++...
T Consensus 38 i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 38 LERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp EEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred EEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 5666665 459999999999999999999999999999999999766543
No 355
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=3.4e-09 Score=60.88 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=38.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 17 RGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 17 ~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
+|||||+|.+.++|+.|+..|++..+.|++|.|.++.+...
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 51 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 67999999999999999999999999999999999976554
No 356
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.9e-09 Score=60.79 Aligned_cols=41 Identities=12% Similarity=0.262 Sum_probs=38.3
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 18 GFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 18 g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|+|||+|.+.++|++|++.|+|..+.|++|.|.++......
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcce
Confidence 99999999999999999999999999999999999876544
No 357
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.97 E-value=2.3e-09 Score=61.44 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=36.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 17 RGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 17 ~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
+|||||+|.+.++|.+|+..+++..+.|++|.|+++...
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 57 NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 799999999999999999999999999999999998654
No 358
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.4e-09 Score=60.74 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=40.8
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCeecCcEEEEeecC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENL-DGREYLGRILRVNFSD 53 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~i~v~~~~ 53 (148)
|.+++++++ +|||||+|.+.++|..|+..| ++..+.|++|.|+|+.
T Consensus 39 i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 39 IRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp EEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred EeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 667777763 699999999999999999988 9999999999999863
No 359
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=1.3e-09 Score=64.02 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=42.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeecCcEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLD--GREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~~~~i~v~~~~~~~~ 57 (148)
+|.+|.+++ ++|||||+|.+.++|..|+..++ +..+.|++|.|.++.....
T Consensus 52 ~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 52 KIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp CCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred CEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 477888864 46999999999999999999875 4569999999999876544
No 360
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=4.4e-09 Score=59.58 Aligned_cols=49 Identities=27% Similarity=0.457 Sum_probs=42.6
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|.+|++++ +||||+|.+.++|++|+..|++..+.|++|.|.++..+...
T Consensus 37 v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 37 VIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp CCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred eEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 66777763 49999999999999999999999999999999999766543
No 361
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.6e-09 Score=63.74 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=40.9
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee-----cCcEEEEeecCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREY-----LGRILRVNFSDKPK 56 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-----~~~~i~v~~~~~~~ 56 (148)
|++|.++. ++|||||+|.+.++|++|+..|||..+ .++++++.++....
T Consensus 54 v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 54 VDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp EEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred eEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 56666653 369999999999999999999999988 68899999886443
No 362
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=4.6e-09 Score=59.27 Aligned_cols=49 Identities=33% Similarity=0.521 Sum_probs=42.4
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|.+|++++ +||||+|.+.++|+.|+..|++..+.|++|.|.++.+....
T Consensus 36 v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 36 VIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp EEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred EEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 56777763 49999999999999999999999999999999999766443
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.8e-09 Score=60.38 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=41.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|.++ ++++|||||+|.+.++|..|+..+ ..+.+++|.|.|+..+...
T Consensus 43 ~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 43 EVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBCEEECSSCCCCC
T ss_pred CEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeEEEEEccCCCCC
Confidence 36778877 368999999999999999999964 4467999999998766543
No 364
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=2.2e-09 Score=63.09 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=41.7
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
|.+|.++. ++|||||+|.+.++|+.|+..|++..+.|++|.|.|+...
T Consensus 37 i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 37 LGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred EEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 55666653 5689999999999999999999999999999999998643
No 365
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.93 E-value=5.8e-09 Score=62.32 Aligned_cols=51 Identities=14% Similarity=0.339 Sum_probs=42.9
Q ss_pred CcceeEeeecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCeecC--cEEEEeecCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGF-AFVTMSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKP 57 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~~--~~i~v~~~~~~~~ 57 (148)
.|.+|.++.. .|| |||+|.+.++|..|+..|+|..|.| ++|.|.++.....
T Consensus 51 ~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 51 KVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp CEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred CEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 3678888652 285 9999999999999999999999987 6999999976653
No 366
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=4.6e-09 Score=59.60 Aligned_cols=43 Identities=33% Similarity=0.501 Sum_probs=39.1
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCC-CeecCcEEEEeecCCCCCC
Q 032066 16 SRGFAFVTMSTVEDCNAVIENLDG-REYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 16 ~~g~afv~f~~~~~a~~a~~~l~~-~~~~~~~i~v~~~~~~~~~ 58 (148)
++|||||+|.+.++|++|+..+++ ..+.|++|.|.++.+....
T Consensus 43 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 43 KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 579999999999999999999999 9999999999999766543
No 367
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=4.7e-09 Score=59.72 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=42.8
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
|.+| +.++.+|+ ||||+|.+.++|++|+. +++..+.|++|.|.++......
T Consensus 35 v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 35 VASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp EEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred eEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 4454 67776765 99999999999999999 9999999999999988655443
No 368
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.8e-09 Score=60.95 Aligned_cols=48 Identities=15% Similarity=0.296 Sum_probs=41.6
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 57 (148)
|.+|.+. +|||||+|.+.++|+.|+..|++..+.|++|.|.++.....
T Consensus 38 v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 38 IMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp CCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred EEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 5666663 68999999999999999999999999999999999865543
No 369
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.89 E-value=3.2e-09 Score=59.48 Aligned_cols=35 Identities=23% Similarity=0.576 Sum_probs=32.7
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEee
Q 032066 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNF 51 (148)
Q Consensus 16 ~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 51 (148)
++|||||+|.+.++|.+|+ .+++..+.|++|.|+.
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 3799999999999999999 8999999999999874
No 370
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=8.5e-09 Score=60.78 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=37.3
Q ss_pred cceeEeeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEee
Q 032066 2 LSKLTVLYDRET---GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNF 51 (148)
Q Consensus 2 i~~i~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 51 (148)
|. +.++.++.+ |+++|||||+|.+.++|++|+..++ .++|+.+.+..
T Consensus 35 i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 35 LV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred EE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 44 677777766 7999999999999999999999873 35666666653
No 371
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=6.1e-09 Score=59.43 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=44.1
Q ss_pred Cccee-EeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCC
Q 032066 1 MLSKL-TVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 55 (148)
.|.++ .+++++.+| .|||+|.+.++|..|+..+++..+.|++|.|.++.+.
T Consensus 41 ~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 41 VVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 36778 477776554 3999999999999999999999999999999999766
No 372
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.85 E-value=7.6e-09 Score=66.60 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=45.6
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
.|.+|+++++. +|+++|||||+|.+.++|..|+..+ +..+.|++|.|.+...
T Consensus 135 ~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 135 QVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp CEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred CEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 47889999986 6999999999999999999999854 5689999999998754
No 373
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.81 E-value=9.2e-09 Score=60.76 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=39.6
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcE-----EEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI-----LRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~-----i~v~~~~~~ 55 (148)
.|.+|.++.+ |||||+|.+.++|++|+..|++..+.|++ +.+....+.
T Consensus 42 ~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 42 DVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp CEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred CeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 3667777765 89999999999999999999999999988 677665543
No 374
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.80 E-value=9.6e-09 Score=67.42 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=47.2
Q ss_pred CcceeEeeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRE----TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
+|.++.|.++.. +++++|++||+|.+.++|.+|+..|+|..+.|++|.+.++.
T Consensus 155 ~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 155 AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 478889986654 44899999999999999999999999999999999999875
No 375
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.68 E-value=3.3e-08 Score=65.42 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=42.9
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee------------cCcEEEEeecCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREY------------LGRILRVNFSDKP 55 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~------------~~~~i~v~~~~~~ 55 (148)
.|++|+|+. ++|||||+|.+.++|+.|+..|++..+ .|+.|.|.|+...
T Consensus 169 ~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 169 DIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 478888885 469999999999999999999999999 8999999999754
No 376
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.61 E-value=1.1e-07 Score=53.57 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=35.5
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCe--ecCcEEEEeecCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE--YLGRILRVNFSDKPK 56 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~~~~i~v~~~~~~~ 56 (148)
.|.+|+++++ ++|||||+|.+.++|++ +++.. +.|+++.+.++.++.
T Consensus 37 ~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 37 EVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp CEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred CEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 4678888874 78999999999999984 34544 459999999987554
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=1.1e-07 Score=53.16 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=40.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
+|.+++++.++ +||+|.+.++|.+|++ |+|..+.|+.|+|....+
T Consensus 41 ~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 41 EVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp CEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred CeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 36678888875 8999999999999998 999999999999998753
No 378
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=9.8e-08 Score=53.47 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=39.0
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 58 (148)
.|.+|+++++ ++|||||+|.+.++|++|.. ....+.+++|.+.++.++...
T Consensus 31 ~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 31 DVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCCC
T ss_pred CeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCCC
Confidence 3677888765 78999999999999986543 234568999999998766544
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=3e-07 Score=51.64 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=39.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
+|..++++.++ +||+|.+.++|.+|++ |+|..+.|+.++|.+..
T Consensus 50 ~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 50 TIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp CCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred CEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 36678888886 9999999999999998 99999999999998654
No 380
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.42 E-value=2.9e-06 Score=47.60 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=60.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCC--ceeEEEEEecCHHHHHHHHHHhCCceeCC-----eEEE
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR--SRGYGFVCYSTKAEMETALESLNGVELEG-----RAMR 139 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~i~g-----~~l~ 139 (148)
.+|.|++||++++++++.+.+.....+....+..+..+.. ...-|||.|.+.+++......++|+.+-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4789999999999999999999988777666665543322 23568999999999999999999987632 2345
Q ss_pred EEec
Q 032066 140 VSLA 143 (148)
Q Consensus 140 v~~~ 143 (148)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6655
No 381
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.31 E-value=1.1e-06 Score=61.12 Aligned_cols=46 Identities=24% Similarity=0.482 Sum_probs=36.8
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeec---Cc--EEEEeecC
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYL---GR--ILRVNFSD 53 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---~~--~i~v~~~~ 53 (148)
|++|.+.. ++|||||+|.+.++|++|++.|||..+. |+ ++++.|..
T Consensus 47 V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 47 VDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred eEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 55555532 5799999999999999999999999873 34 68888874
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.16 E-value=1.5e-05 Score=45.48 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=59.9
Q ss_pred CcceEEEcCCCCCCCH-----HHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 032066 65 TDFKLFVGNLSWSVTT-----ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 139 (148)
-+++|++.||+..+-. ..++++|..|+......+.+.- + =..|.|.++++|.+|-..||+..++|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 4568999999886522 5778999999987765554331 1 257999999999999999999999999999
Q ss_pred EEeccC
Q 032066 140 VSLAQG 145 (148)
Q Consensus 140 v~~~~~ 145 (148)
+-++.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 988653
No 383
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.10 E-value=3.8e-05 Score=43.18 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=45.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHh
Q 032066 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128 (148)
Q Consensus 64 ~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 128 (148)
.....+++ +.|+.+...||.++|++||.+ .|.++-+- .|||.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34456777 999999999999999999954 45555332 5999999999999999976
No 384
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.10 E-value=4.1e-05 Score=44.89 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=59.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-eEEEEE
Q 032066 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG-RAMRVS 141 (148)
Q Consensus 63 ~~~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g-~~l~v~ 141 (148)
....+-|.|-+.|+.. ...+.+.|++||.|...... . ....-.|.|.++.+|++||+ .||..++| ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3456789999999985 67889999999999887652 1 23478899999999999999 79999985 667777
Q ss_pred ecc
Q 032066 142 LAQ 144 (148)
Q Consensus 142 ~~~ 144 (148)
++.
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 385
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.98 E-value=2.6e-05 Score=44.02 Aligned_cols=79 Identities=10% Similarity=0.065 Sum_probs=55.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCC--ceeEEEEEecCHHHHHHHHHHhCCceeCC-----eE
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR--SRGYGFVCYSTKAEMETALESLNGVELEG-----RA 137 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~i~g-----~~ 137 (148)
.+-+|.|+.||+++|++++.+.+.+.-.+....+..+..+.. ...-|||.|.+.++.......++|..+-+ .+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 345799999999999999888888765543333332222221 12458999999999999999999987632 34
Q ss_pred EEEEec
Q 032066 138 MRVSLA 143 (148)
Q Consensus 138 l~v~~~ 143 (148)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 556665
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=0.00019 Score=40.81 Aligned_cols=72 Identities=25% Similarity=0.248 Sum_probs=56.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhh---c--CCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQE---Y--GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~---~--g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 139 (148)
...+|.|.|||+.++++.|.-+|+. . |.|..+.... +-|+|+|.+.+.|++.++ -..+.++|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 3468999999999999999999986 2 3576665531 358999999999999988 336778888888
Q ss_pred EEeccC
Q 032066 140 VSLAQG 145 (148)
Q Consensus 140 v~~~~~ 145 (148)
|...-+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 877544
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.82 E-value=3.1e-05 Score=43.68 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=44.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 129 (148)
..+++ +.|+.+...||.++|++||. ..|.++-+- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999984 345555332 59999999999999999774
No 388
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.37 E-value=0.00042 Score=41.20 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=54.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEEEc--------CCCC-----CceeEEEEEecCHHHHHHHHHHhCCc
Q 032066 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVG-ARVLYD--------GESG-----RSRGYGFVCYSTKAEMETALESLNGV 131 (148)
Q Consensus 66 ~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~~--------~~~~-----~~~~~~fv~f~~~~~a~~a~~~l~~~ 131 (148)
..-|.|-+.|++. ...+-+.|++||.|.. ...... +... .....-.|+|.++.+|++||+ .||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3457788887775 4678889999998765 211100 0000 023466899999999999999 9999
Q ss_pred eeCCeEEEEEeccC
Q 032066 132 ELEGRAMRVSLAQG 145 (148)
Q Consensus 132 ~i~g~~l~v~~~~~ 145 (148)
.++|.-|-|.++++
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888887653
No 389
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00076 Score=38.83 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=35.0
Q ss_pred cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEe
Q 032066 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50 (148)
Q Consensus 2 i~~i~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 50 (148)
|.+|.+..|- . =|+|+|.+...|-+|.-.|+|..|.|++|++.
T Consensus 53 i~KI~L~pDH-~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 53 IRKILLVSDF-N-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp CSEEEEETTT-T-----EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred eeEEEEecCC-C-----ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 3455555553 2 29999999999999998899999999999987
No 390
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.00088 Score=39.54 Aligned_cols=46 Identities=0% Similarity=0.016 Sum_probs=36.4
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCeecCcEEEEeec
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMST-VEDCNAVIENLD--GREYLGRILRVNFS 52 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~--~~~~~~~~i~v~~~ 52 (148)
.|..|.++++.. .|||.|.+ ..+|..|+..++ +..|.+..+.++..
T Consensus 45 ~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 45 EIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 367788888764 39999999 899999999884 66788877777644
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.0038 Score=35.50 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=42.1
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCCCCCCCCCCCCCcceEEEcCCCCCCC
Q 032066 18 GFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVT 79 (148)
Q Consensus 18 g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~nlp~~~~ 79 (148)
+-|+|+|.+.+.|++.+. .....+.+.++.|.+..+. .+.++.+.+||++++
T Consensus 48 ~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~~---------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPPR---------APARLLLQGLPPGTS 99 (104)
T ss_dssp TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCCC---------CCCCCCCCSCCCCCC
T ss_pred CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCCC---------CcceEeeecCCCCCC
Confidence 459999999999999997 3478889999999875433 445799999998865
No 392
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.70 E-value=0.0014 Score=47.45 Aligned_cols=55 Identities=7% Similarity=0.147 Sum_probs=40.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHH
Q 032066 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126 (148)
Q Consensus 66 ~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 126 (148)
.+.|+|. .|...++.+|.+.|.+||.|.++.+..+ ...|+.|+|.+.++++.++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-----~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-----FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-----SSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-----CCeEEEEEeCCHHHHHHHHh
Confidence 4679997 6889999999999999999999877643 13699999999999887754
No 393
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.63 E-value=0.2 Score=36.89 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=43.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 032066 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129 (148)
Q Consensus 66 ~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 129 (148)
+..++++ +|..+...+|.+.|+.||.+ .+.++- ...|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHH
Confidence 4456665 99999999999999999954 444432 2259999999999999999885
No 394
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.63 E-value=0.31 Score=27.75 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=33.6
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecCC
Q 032066 18 GFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54 (148)
Q Consensus 18 g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 54 (148)
.-..|.|.+.++|.+|-..|++..++|+.+++-++.+
T Consensus 47 RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 47 KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3578999999999999999999999999999998763
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.82 E-value=0.18 Score=29.98 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=32.1
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeecCcEEEEeecC
Q 032066 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53 (148)
Q Consensus 16 ~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 53 (148)
....-.|.|.+..+|++||. .||..+.|.-|-|.+..
T Consensus 61 g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 61 GNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp ETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred CCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 34577999999999999998 79999999988888764
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=81.71 E-value=4.7 Score=23.51 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=30.3
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeecC-cEEEEeecC
Q 032066 16 SRGFAFVTMSTVEDCNAVIENLDGREYLG-RILRVNFSD 53 (148)
Q Consensus 16 ~~g~afv~f~~~~~a~~a~~~l~~~~~~~-~~i~v~~~~ 53 (148)
....-.|.|.+..+|++||. .||..+.+ ..|-|.+..
T Consensus 58 ~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 58 TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 45688999999999999998 69999874 667777653
No 397
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=77.69 E-value=10 Score=23.60 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=38.2
Q ss_pred eEEEcCCCCC---------CCHHHHHHHH--hhcCCeeEEEEEEcCCCCCceeEEEEEec-CHHHHHHHHH
Q 032066 68 KLFVGNLSWS---------VTTESLTQAF--QEYGNVVGARVLYDGESGRSRGYGFVCYS-TKAEMETALE 126 (148)
Q Consensus 68 ~l~i~nlp~~---------~~~~~l~~~f--~~~g~v~~~~~~~~~~~~~~~~~~fv~f~-~~~~a~~a~~ 126 (148)
+..|.|+|.. .+..+|.+.| ..|.++. +...+++ ...+|++.|.|. +-.--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 5677788762 3457899977 8897754 5555553 347889999997 5555555554
No 398
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=73.51 E-value=4.4 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.0
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeecC
Q 032066 16 SRGFAFVTMSTVEDCNAVIENLDGREYLG 44 (148)
Q Consensus 16 ~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 44 (148)
.-+.|||.|.+.+++......++|..+.+
T Consensus 44 ~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 44 MYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 33569999999999999999999998854
No 399
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=70.46 E-value=5.8 Score=21.72 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=20.9
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMST 26 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~ 26 (148)
+|+++++..=...|+-+|||-|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788887766678999999999963
No 400
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=65.24 E-value=8.3 Score=21.72 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=20.8
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMST 26 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~ 26 (148)
+|++|++..=...|+-++||-|.|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788887765678999999999963
No 401
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=64.09 E-value=9.1 Score=21.75 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=20.7
Q ss_pred CcceeEeeecCCCCCcccEEEEEeCC
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVTMST 26 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~f~~ 26 (148)
+|++|++..=...|+-+|||-|.|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46778887765678999999999963
No 402
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=57.98 E-value=10 Score=20.75 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=21.4
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCC
Q 032066 15 RSRGFAFVTMSTVEDCNAVIENLDGR 40 (148)
Q Consensus 15 ~~~g~afv~f~~~~~a~~a~~~l~~~ 40 (148)
...||-||++...++...++....+.
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 37899999999999998888755443
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=56.64 E-value=5.6 Score=20.70 Aligned_cols=58 Identities=9% Similarity=0.198 Sum_probs=34.4
Q ss_pred CCHHHHHHHHhhcCC-----eeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 032066 78 VTTESLTQAFQEYGN-----VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144 (148)
Q Consensus 78 ~~~~~l~~~f~~~g~-----v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 144 (148)
+..-+|..++..-+. |-.+.+. ..+.||+.... .++.+++.|++..+.|+.+.++.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 445566666654443 3334442 12577877644 4778888899999999999988764
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=54.73 E-value=25 Score=19.31 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=44.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHh
Q 032066 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128 (148)
Q Consensus 65 ~~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 128 (148)
..+-+-|-|+|..+-..++.-...-.|---.+..+ -|.|.+.|.+.+....|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 56778899999999988887777777754555544 235899999999999999877
No 405
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=53.58 E-value=12 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.5
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCC
Q 032066 16 SRGFAFVTMSTVEDCNAVIENLDGR 40 (148)
Q Consensus 16 ~~g~afv~f~~~~~a~~a~~~l~~~ 40 (148)
.+||-|||=.+..++..|+..+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 6899999999999999999855443
No 406
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=43.02 E-value=21 Score=22.81 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=22.4
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCC
Q 032066 16 SRGFAFVTMSTVEDCNAVIENLDGR 40 (148)
Q Consensus 16 ~~g~afv~f~~~~~a~~a~~~l~~~ 40 (148)
-+||-|||=.+..++..|+..+.+.
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhh
Confidence 7899999999999999999877664
No 407
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=41.19 E-value=47 Score=18.64 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=38.4
Q ss_pred EcCCCCCCCHHHHHHHHh-hcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 032066 71 VGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129 (148)
Q Consensus 71 i~nlp~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 129 (148)
|--++..+.-++|..-.. .||....+... + . -..|-..+.++-++|+..|+
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n--~-----EllIpl~sQeDLDkaIellD 72 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT-N--N-----ELVIPLTTQDDLDKAVELLD 72 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC-S--S-----SSCEECCSHHHHHHHHHHHH
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe-c--c-----eEEEeccCHHHHHHHHHHHc
Confidence 334688888899988776 58987766665 2 1 15688999999999999765
No 408
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=37.79 E-value=14 Score=20.70 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=10.7
Q ss_pred CCcccEEEEEeCCHHHHHH
Q 032066 14 GRSRGFAFVTMSTVEDCNA 32 (148)
Q Consensus 14 ~~~~g~afv~f~~~~~a~~ 32 (148)
|+++|||.| |.+.+.|.+
T Consensus 63 gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 63 HEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SEEEEEEEE-ESHHHHHHH
T ss_pred ceEEEEEEE-ECCHHHHHh
Confidence 477777766 445544443
No 409
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=37.16 E-value=31 Score=20.68 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.7
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCC
Q 032066 16 SRGFAFVTMSTVEDCNAVIENLDGR 40 (148)
Q Consensus 16 ~~g~afv~f~~~~~a~~a~~~l~~~ 40 (148)
..||-||++...++.-.++....+.
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 6899999999999999999876664
No 410
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=35.06 E-value=60 Score=21.63 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=23.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGA 96 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~ 96 (148)
.-+.|+|+|+.++..-|..++.. +.+...
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 45789999999999999999987 554433
No 411
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=34.69 E-value=53 Score=17.83 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=25.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcC
Q 032066 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYG 91 (148)
Q Consensus 62 ~~~~~~~l~i~nlp~~~~~~~l~~~f~~~g 91 (148)
.-..+..+++.+.|..++.++..+++..|-
T Consensus 15 ~lNtPvvi~v~~~~q~v~~~eae~~L~~FI 44 (87)
T 2rf4_B 15 TLNTPVVIHATQLPQHVSTDEVLQFLESFI 44 (87)
T ss_dssp -CCCCCEEEESSCCEECCHHHHHHHHHHHH
T ss_pred ccCCCeEEEeecCCccCCHHHHHHHHHHHH
Confidence 345677899999999999999999999883
No 412
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=34.16 E-value=99 Score=20.28 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=21.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 032066 69 LFVGNLSWSVTTESLTQAFQEYGNVVG 95 (148)
Q Consensus 69 l~i~nlp~~~~~~~l~~~f~~~g~v~~ 95 (148)
..|.|+|+.++..-|..++...+.+..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~ 125 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIED 125 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChhe
Confidence 488999999999999999886544433
No 413
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=33.21 E-value=63 Score=17.71 Aligned_cols=65 Identities=12% Similarity=0.239 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHh-hcCCeeEEEEEEcCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 032066 73 NLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146 (148)
Q Consensus 73 nlp~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 146 (148)
-+|..+.-+++..-.. .||....+.+..+ . -.|-..+.++-++|+..|+ ....-+.|++-...+.
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn---E-----L~iPL~~Q~DLDkAvelLD-rs~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN---E-----LSILLKNQDDLDKAIDILD-RSSSMKSLRILLLSQD 84 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS---S-----CEEECCSHHHHHHHHHHHH-HSTTTTEEEEEEEECS
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc---e-----eEEeccCHHHHHHHHHHhc-cCccccceEEEEEcCC
Confidence 3577888899988776 6998777766622 1 3588899999999999654 2223344455444443
No 414
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=37.67 E-value=10 Score=21.56 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=34.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEEEcCCCCCce-eEEEEEecCHHHHHHHHHHhCC
Q 032066 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSR-GYGFVCYSTKAEMETALESLNG 130 (148)
Q Consensus 66 ~~~l~i~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l~~ 130 (148)
..+|-+... .+++++..+..+.+ +..+.+.+....|.+. ..-+-.|.+.+.|..|+..|-.
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 345555443 34566777777665 3334444332223221 1224588899999999987754
No 415
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=31.36 E-value=32 Score=13.71 Aligned_cols=12 Identities=8% Similarity=0.368 Sum_probs=10.1
Q ss_pred CHHHHHHHHhhc
Q 032066 79 TTESLTQAFQEY 90 (148)
Q Consensus 79 ~~~~l~~~f~~~ 90 (148)
++.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 678899998887
No 416
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=31.27 E-value=25 Score=18.42 Aligned_cols=11 Identities=27% Similarity=0.763 Sum_probs=8.7
Q ss_pred cccEEEEEeCC
Q 032066 16 SRGFAFVTMST 26 (148)
Q Consensus 16 ~~g~afv~f~~ 26 (148)
.+||+||+=.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 57999998664
No 417
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=29.47 E-value=28 Score=18.24 Aligned_cols=11 Identities=9% Similarity=0.468 Sum_probs=8.7
Q ss_pred cccEEEEEeCC
Q 032066 16 SRGFAFVTMST 26 (148)
Q Consensus 16 ~~g~afv~f~~ 26 (148)
.+||+||+=.+
T Consensus 11 ~KGfGFI~~~d 21 (74)
T 2kcm_A 11 AKKYGFIQGDD 21 (74)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 57999998654
No 418
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=29.43 E-value=28 Score=17.72 Aligned_cols=10 Identities=40% Similarity=0.952 Sum_probs=7.8
Q ss_pred cccEEEEEeC
Q 032066 16 SRGFAFVTMS 25 (148)
Q Consensus 16 ~~g~afv~f~ 25 (148)
.+||+||.=.
T Consensus 12 ~kGfGFI~~~ 21 (67)
T 3cam_A 12 AKGFGFITPD 21 (67)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEecC
Confidence 5799999754
No 419
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=29.04 E-value=25 Score=17.76 Aligned_cols=10 Identities=20% Similarity=0.896 Sum_probs=7.9
Q ss_pred cccEEEEEeC
Q 032066 16 SRGFAFVTMS 25 (148)
Q Consensus 16 ~~g~afv~f~ 25 (148)
.+||+||.=.
T Consensus 12 ~kGfGFI~~~ 21 (66)
T 1c9o_A 12 EKGYGFIEVE 21 (66)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEecC
Confidence 5799999755
No 420
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.13 E-value=27 Score=23.37 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=22.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 032066 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVG 95 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~l~~~f~~~g~v~~ 95 (148)
....|.|+|+.++..-|..++.....+..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~ 143 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVID 143 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccE
Confidence 35789999999999999998875433433
No 421
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=27.66 E-value=28 Score=18.09 Aligned_cols=10 Identities=20% Similarity=0.787 Sum_probs=7.8
Q ss_pred cccEEEEEeC
Q 032066 16 SRGFAFVTMS 25 (148)
Q Consensus 16 ~~g~afv~f~ 25 (148)
.+||+||.=.
T Consensus 12 ~kGfGFI~~~ 21 (73)
T 3a0j_A 12 EKGYGFIERE 21 (73)
T ss_dssp TTTEEEEECT
T ss_pred CCCEEEEecC
Confidence 5799999754
No 422
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=27.27 E-value=29 Score=17.58 Aligned_cols=10 Identities=30% Similarity=0.889 Sum_probs=7.9
Q ss_pred cccEEEEEeC
Q 032066 16 SRGFAFVTMS 25 (148)
Q Consensus 16 ~~g~afv~f~ 25 (148)
.+||+||.=.
T Consensus 11 ~kGfGFI~~~ 20 (66)
T 1g6p_A 11 KKGYGFITKD 20 (66)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEecC
Confidence 5799999755
No 423
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=27.19 E-value=31 Score=18.20 Aligned_cols=10 Identities=20% Similarity=0.737 Sum_probs=8.0
Q ss_pred cccEEEEEeC
Q 032066 16 SRGFAFVTMS 25 (148)
Q Consensus 16 ~~g~afv~f~ 25 (148)
.+||+||+=.
T Consensus 19 ~kGfGFI~~~ 28 (79)
T 1h95_A 19 RNGYGFINRN 28 (79)
T ss_dssp TTTEEEEEEG
T ss_pred CCCcEEEecC
Confidence 6799999754
No 424
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=26.39 E-value=71 Score=16.14 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=15.7
Q ss_pred eeEeeecCCCCCcccEEEEEeCC
Q 032066 4 KLTVLYDRETGRSRGFAFVTMST 26 (148)
Q Consensus 4 ~i~~~~~~~~~~~~g~afv~f~~ 26 (148)
..+++.++ ..-+.|++.|.|.+
T Consensus 21 ~arlllnr-Rps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNR-RPPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTB-CCSSTTEEEEEETT
T ss_pred hhhhhhcc-CCCcCceEEEEEec
Confidence 35666665 33578999999987
No 425
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=25.95 E-value=93 Score=17.39 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=40.5
Q ss_pred ceEEEcCCCCCCCHHH--HHHHHh----h----cC-----CeeEEEEEEcC---CCCCceeEEEEEecCHHH---HHHHH
Q 032066 67 FKLFVGNLSWSVTTES--LTQAFQ----E----YG-----NVVGARVLYDG---ESGRSRGYGFVCYSTKAE---METAL 125 (148)
Q Consensus 67 ~~l~i~nlp~~~~~~~--l~~~f~----~----~g-----~v~~~~~~~~~---~~~~~~~~~fv~f~~~~~---a~~a~ 125 (148)
+.|+|.|+|.+..+.. +..+|. . .+ .|....-..+. ....|+ .-.|.|....+ ..+|.
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPR-hIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPR-HIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCC-EEEEEESCHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCC-eEEEEecccccHHHHHHHH
Confidence 4699999999843322 333332 1 22 23333222111 112333 46677776554 44455
Q ss_pred HHhCCceeCCeEEEEEe
Q 032066 126 ESLNGVELEGRAMRVSL 142 (148)
Q Consensus 126 ~~l~~~~i~g~~l~v~~ 142 (148)
..-....+.|.++++.-
T Consensus 83 r~k~~vtykg~pirlsa 99 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLTV 99 (100)
T ss_dssp HHHCCEEETTEEEEEEE
T ss_pred HHhCceeeCCcceeecC
Confidence 55566788999998753
No 426
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=25.49 E-value=32 Score=17.72 Aligned_cols=12 Identities=42% Similarity=0.827 Sum_probs=8.8
Q ss_pred CcccEEEEEeCC
Q 032066 15 RSRGFAFVTMST 26 (148)
Q Consensus 15 ~~~g~afv~f~~ 26 (148)
..+||+||.=.+
T Consensus 15 ~~kGfGFI~~~~ 26 (71)
T 3i2z_B 15 ESKGFGFITPED 26 (71)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEecCC
Confidence 357999997654
No 427
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=25.06 E-value=36 Score=18.61 Aligned_cols=10 Identities=40% Similarity=0.986 Sum_probs=7.8
Q ss_pred cccEEEEEeC
Q 032066 16 SRGFAFVTMS 25 (148)
Q Consensus 16 ~~g~afv~f~ 25 (148)
.+||+||+-.
T Consensus 19 ~KGfGFI~~~ 28 (90)
T 3ulj_A 19 RMGFGFISMT 28 (90)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeEEeEec
Confidence 5799999753
No 428
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=25.03 E-value=17 Score=17.78 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=15.9
Q ss_pred EEcCCCCCCCHHHHHHHHhhc
Q 032066 70 FVGNLSWSVTTESLTQAFQEY 90 (148)
Q Consensus 70 ~i~nlp~~~~~~~l~~~f~~~ 90 (148)
|+.|+|.......|++.+..|
T Consensus 42 flenvprgtktahirealrry 62 (70)
T 2q2k_A 42 FLENVPRGTKTAHIREALRRY 62 (70)
T ss_dssp HHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHcCCCccchHHHHHHHHHH
Confidence 567888888877777777665
No 429
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.06 E-value=36 Score=19.09 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=6.9
Q ss_pred HHHHHHHhhcC
Q 032066 81 ESLTQAFQEYG 91 (148)
Q Consensus 81 ~~l~~~f~~~g 91 (148)
..|+++|++||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 45677777776
No 430
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.63 E-value=76 Score=20.78 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=19.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc
Q 032066 68 KLFVGNLSWSVTTESLTQAFQEY 90 (148)
Q Consensus 68 ~l~i~nlp~~~~~~~l~~~f~~~ 90 (148)
.+.|+|+|+.++...+..++...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTG
T ss_pred eEEEECCCCCccHHHHHHHHhcC
Confidence 58899999999988888777643
No 431
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=22.04 E-value=40 Score=18.25 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=7.8
Q ss_pred ccEEEEEeCC
Q 032066 17 RGFAFVTMST 26 (148)
Q Consensus 17 ~g~afv~f~~ 26 (148)
+||+||+-.+
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 6999998653
No 432
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=21.33 E-value=96 Score=15.86 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=12.8
Q ss_pred eeEeeecCCCCCcccEEEEEeCC
Q 032066 4 KLTVLYDRETGRSRGFAFVTMST 26 (148)
Q Consensus 4 ~i~~~~~~~~~~~~g~afv~f~~ 26 (148)
++.+++.+..| +||.|+-.-
T Consensus 40 ~~nVVYRR~dG---~yGlI~p~~ 59 (66)
T 3lyv_A 40 ATNILYRREDG---NLGLIEAKL 59 (66)
T ss_dssp SEEEEEECTTS---SEEEEEECC
T ss_pred CEEEEEEECCC---CEEEEEeCc
Confidence 45666665444 799887543
No 433
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=21.09 E-value=85 Score=18.28 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=15.5
Q ss_pred CcceeEeeecCCCCCcccEEEEE-eCCHHHHHHHHH
Q 032066 1 MLSKLTVLYDRETGRSRGFAFVT-MSTVEDCNAVIE 35 (148)
Q Consensus 1 ~i~~i~~~~~~~~~~~~g~afv~-f~~~~~a~~a~~ 35 (148)
+|++|++..|-. -...|+. |.+.++...++.
T Consensus 45 tVt~V~vS~Dl~----~AkVyvs~~~~~~~~~~~~~ 76 (129)
T 2e7g_A 45 ELSKVSLTPDFS----ACRAYWKTTLSAEQNAHMEA 76 (129)
T ss_dssp CEEEEEECTTSC----CEEEEECCCSCHHHHHHHHH
T ss_pred EEEEEEECCCCc----EEEEEEEecCChhhHHHHHH
Confidence 466777776642 2334555 445544443443
No 434
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=21.04 E-value=43 Score=18.51 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=8.3
Q ss_pred cccEEEEEeCC
Q 032066 16 SRGFAFVTMST 26 (148)
Q Consensus 16 ~~g~afv~f~~ 26 (148)
.+||+||.=.+
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 57999997543
No 435
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=20.75 E-value=45 Score=18.13 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=7.5
Q ss_pred ccEEEEEeC
Q 032066 17 RGFAFVTMS 25 (148)
Q Consensus 17 ~g~afv~f~ 25 (148)
+||+||+=.
T Consensus 28 KGfGFI~~d 36 (89)
T 1wfq_A 28 TSYGFIQCS 36 (89)
T ss_dssp SSEEEEEET
T ss_pred CCeeEEecC
Confidence 799999754
No 436
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=20.50 E-value=41 Score=17.61 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.1
Q ss_pred CHHHHHHHHhhcCCeeE
Q 032066 79 TTESLTQAFQEYGNVVG 95 (148)
Q Consensus 79 ~~~~l~~~f~~~g~v~~ 95 (148)
|--|+++++.+||.+..
T Consensus 4 tlYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVY 20 (72)
T ss_dssp SHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 44589999999997644
No 437
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.32 E-value=83 Score=20.51 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc
Q 032066 68 KLFVGNLSWSVTTESLTQAFQEY 90 (148)
Q Consensus 68 ~l~i~nlp~~~~~~~l~~~f~~~ 90 (148)
.+.+.|+|+.++..-|..++...
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~ 119 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNK 119 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTG
T ss_pred cEEEEECchhccHHHHHHHHhcC
Confidence 47899999999998888888754
Done!