BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032067
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
YY VL + +QAS+ I+ AYRKLALKWHPD K+P EA RRF+Q+ EAY VLSDA
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPD---KNPENKEEAERRFKQVAEAYEVLSDAK 67
Query: 68 KRTVY 72
KR +Y
Sbjct: 68 KRDIY 72
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 6 ACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSD 65
A YY VLG+ AS +I+ AYRKLAL+WHPD K+P EA ++F+ + EAY VLSD
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPD---KNPDNKEEAEKKFKLVSEAYEVLSD 65
Query: 66 AAKRTVY 72
+ KR++Y
Sbjct: 66 SKKRSLY 72
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Query: 1 MSDTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAY 60
+S +G Y VLGL K A++ +I+ +YRKLALK+HPD+ +P AA +F++I A+
Sbjct: 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAAD----KFKEINNAH 67
Query: 61 SVLSDAAKRTVY 72
++L+DA KR +Y
Sbjct: 68 AILTDATKRNIY 79
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
YY +LG+ K A EIR AY++LA+K+HPDR D EA +F++I+EAY VL+D+
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQ 60
Query: 68 KRTVY 72
KR Y
Sbjct: 61 KRAAY 65
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
YY +LG+ K A EIR AY++LA+K+HPDR D EA +F++I+EAY VL+D+
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQ 60
Query: 68 KRTVY 72
KR Y
Sbjct: 61 KRAAY 65
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
YY +LG+ K A EIR AY++LA+K+HPDR D EA +F++I+EAY VL+D+
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQ 60
Query: 68 KRTVY 72
KR Y
Sbjct: 61 KRAAY 65
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 6 ACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSD 65
YY VLG+ A+ E++ AYRKLALK+HPD K+P +F+QI +AY VLSD
Sbjct: 6 TTYYDVLGVKPNATQEELKKAYRKLALKYHPD---KNPNEG----EKFKQISQAYEVLSD 58
Query: 66 AAKRTVY 72
A KR +Y
Sbjct: 59 AKKRELY 65
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 6 ACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSD 65
A YY +L + + ASA +I+ AYR+ AL+WHPD K+P A ++F+++ EAY VLSD
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPD---KNPDNKEFAEKKFKEVAEAYEVLSD 58
Query: 66 AAKRTVY 72
KR +Y
Sbjct: 59 KHKREIY 65
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 9/72 (12%)
Query: 1 MSDTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAY 60
+ +TG YY VLG+ AS +E++ AYRK+ALK+HPD K+P A +F+QI +AY
Sbjct: 5 VKETG--YYDVLGVKPDASDNELKKAYRKMALKFHPD---KNPDGA----EQFKQISQAY 55
Query: 61 SVLSDAAKRTVY 72
VLSD KR +Y
Sbjct: 56 EVLSDEKKRQIY 67
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 2 SDTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYS 61
S + YY +LG+ + AS EI+ AY +LA K+HPD DP +A +F Q+ EAY
Sbjct: 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYE 58
Query: 62 VLSDAAKRTVY 72
VLSD KR Y
Sbjct: 59 VLSDEVKRKQY 69
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 5/64 (7%)
Query: 9 YSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAK 68
Y VLG+ + AS ++I+ AY+KLA +WHPD+ KDP A RF QI +AY +LS+ K
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDK-NKDPG----AEDRFIQISKAYEILSNEEK 74
Query: 69 RTVY 72
RT Y
Sbjct: 75 RTNY 78
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 5 GACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLS 64
G YY LGL + AS EI+ AYR+ AL++HPD+ K+P A +F++I EAY VLS
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDK-NKEPG----AEEKFKEIAEAYDVLS 56
Query: 65 DAAKRTVY 72
D KR ++
Sbjct: 57 DPRKREIF 64
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
+YS+LG+ K AS+ EIR A++KLALK HPD+ +P A G+ F +I AY VL D
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD----FLKINRAYEVLKDED 59
Query: 68 KRTVY 72
R Y
Sbjct: 60 LRKKY 64
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
+YS+LG+ K AS+ EIR A++KLALK HPD+ +P A G+ F +I AY VL D
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD----FLKINRAYEVLKDED 78
Query: 68 KRTVY 72
R Y
Sbjct: 79 LRKKY 83
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
YY +LG+ K AS +I+ A+ KLA+K+HPD+ K P +A +F++I EAY LSDA
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDK-NKSP----DAEAKFREIAEAYETLSDAN 63
Query: 68 KRTVY 72
+R Y
Sbjct: 64 RRKEY 68
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 7/64 (10%)
Query: 9 YSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAK 68
Y +LG+ A+ E++ YRK ALK+HPD+ PT E +F++I EA+ +L+D K
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDK----PTGDTE---KFKEISEAFEILNDPQK 63
Query: 69 RTVY 72
R +Y
Sbjct: 64 REIY 67
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 SDTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYS 61
S + YY +LG+ + AS +++ AYR+LALK+HPD+ A A F+ I AY+
Sbjct: 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDK-----NHAPGATEAFKAIGTAYA 57
Query: 62 VLSDAAKRTVY 72
VLS+ KR Y
Sbjct: 58 VLSNPEKRKQY 68
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
YY +LG+ + A EI AYRKLAL+WHPD + ++ +A ++F I A VLSD
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 68 KRTVY 72
R +
Sbjct: 443 XRKKF 447
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
YY +LG+ + A EI AYRKLAL+WHPD + ++ +A ++F I A VLSD
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 68 KRTVY 72
R +
Sbjct: 443 MRKKF 447
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
YY+++G+ I+ AYR+LA K+HPD K+P A RF+++ EA+ VLSD
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDV-SKEPDAEA----RFKEVAEAWEVLSDEQ 61
Query: 68 KRTVY 72
+R Y
Sbjct: 62 RRAEY 66
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
YY++LG+ I+ AYR+LA K+HPD + +A +F+ + EA+ VL D
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDV-----SKENDAEAKFKDLAEAWEVLKDEQ 84
Query: 68 KRTVY 72
+R Y
Sbjct: 85 RRAEY 89
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAG--EANRRFQQIQEAYSVLSD 65
+YS+LG A+ S+++ Y+KL L +HPD+ D A E ++F +I +A+ +L +
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71
Query: 66 AAKRTVY 72
+ Y
Sbjct: 72 EETKREY 78
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 YSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAK 68
Y +LG+ A+ ++I+ AY + +HPDR + + EA RF +I +AY VL A
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRN----SGSAEAAERFTRISQAYVVLGSATL 75
Query: 69 RTVY 72
R Y
Sbjct: 76 RRKY 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAG--EANRRFQQIQEAYSVLSD 65
+YS+LG A+ S+++ Y+KL L +HPD+ D A E ++F +I +A+ +L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 66 AAKRTVY 72
+ Y
Sbjct: 78 EETKKKY 84
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 8 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
YY++LG + +S +I ++ AL+ HPD+ ++P A FQ++Q+A +L++
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAV----ETFQKLQKAKEILTNEE 77
Query: 68 KRTVY 72
R Y
Sbjct: 78 SRARY 82
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 9 YSVLGLHKQA-SASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAA 67
Y VL ++++ ++ AYR LA K HPDR +K+ A RF+ I AY L D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDR-VKNKEEKLLAEERFRVIATAYETLKDDE 76
Query: 68 KRTVY 72
+T Y
Sbjct: 77 AKTNY 81
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 5 GACYYSVLGLHKQA---SASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYS 61
G+ V + +QA SE + R+L LKWHPD K+P AN F+ +Q +
Sbjct: 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPD---KNPENHDIANEVFKHLQNEIN 68
Query: 62 VLSDAA 67
L A
Sbjct: 69 RLEKQA 74
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 9 YSVLGLHKQASASEIRDAYRKLALKWHPDR 38
+ +LG+ AS E+ AYRKLA+ HPD+
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|4GD5|A Chain A, X-Ray Crystal Structure Of A Putative Phosphate Abc
Transporter Substrate-Binding Protein With Bound
Phosphate From Clostridium Perfringens
pdb|4GD5|B Chain B, X-Ray Crystal Structure Of A Putative Phosphate Abc
Transporter Substrate-Binding Protein With Bound
Phosphate From Clostridium Perfringens
Length = 279
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 1 MSDTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAY 60
+S+ G + G KQA E+ AY +AL H + +KD T QI++ Y
Sbjct: 85 VSEIGXASRDLKGEEKQAGLKEVEIAYDGIALITHKNNPVKDLT--------LVQIKDIY 136
Query: 61 S 61
+
Sbjct: 137 T 137
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 5 GACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGE-----ANRRFQQIQEA 59
G + +G+ + +++ YRK L HPD+ A G+ A F ++ +A
Sbjct: 48 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDK------ATGQPYEQYAKMIFMELNDA 101
Query: 60 YSVLSDAAKRTVY 72
+S + ++ +Y
Sbjct: 102 WSEFENQGQKPLY 114
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 5 GACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLS 64
G + +G + +++ YRK L HPD+ P A F ++ +A+S
Sbjct: 35 GETKWKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQY-AKXIFXELNDAWSEFE 93
Query: 65 DAAKRTVY 72
+ ++ +Y
Sbjct: 94 NQGQKPLY 101
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 21 SEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 72
S +R YR+L + HPD A + + + + +AY L D +R+ Y
Sbjct: 25 SRLRKEYRQLQAQHHPD-------MAQQGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 21 SEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 72
S +R YR+L + HPD A + + + + +AY L D +R+ Y
Sbjct: 33 SRLRKEYRQLQAQHHPD-------MAQQGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 5 GACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLS 64
G + +G+ + +++ YRK L HPD+ P A F ++ +A+S
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQ-YAKMIFMELNDAWSEFE 174
Query: 65 DAAKRTV 71
+ ++ +
Sbjct: 175 NQGQKPL 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,731,467
Number of Sequences: 62578
Number of extensions: 111245
Number of successful extensions: 262
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 35
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)