Query 032067
Match_columns 148
No_of_seqs 209 out of 1824
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 14:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 5.2E-24 1.8E-28 137.9 8.2 73 2-78 3-75 (79)
2 2yua_A Williams-beuren syndrom 99.9 1.2E-23 4.2E-28 141.8 8.4 71 3-77 14-84 (99)
3 2ctq_A DNAJ homolog subfamily 99.9 1.3E-23 4.5E-28 144.6 8.3 74 4-81 18-91 (112)
4 2ej7_A HCG3 gene; HCG3 protein 99.9 1.9E-23 6.4E-28 136.2 8.3 74 3-79 6-79 (82)
5 1hdj_A Human HSP40, HDJ-1; mol 99.9 2.9E-23 1E-27 133.8 8.4 72 5-81 2-73 (77)
6 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 3E-23 1E-27 142.1 8.0 91 3-99 12-103 (109)
7 1wjz_A 1700030A21RIK protein; 99.9 2.1E-23 7.3E-28 139.1 6.1 75 4-78 14-90 (94)
8 2ctw_A DNAJ homolog subfamily 99.9 6E-23 2.1E-27 140.7 8.1 72 2-77 13-84 (109)
9 1bq0_A DNAJ, HSP40; chaperone, 99.9 1.4E-23 4.8E-28 142.5 4.9 73 5-81 2-74 (103)
10 2ctr_A DNAJ homolog subfamily 99.9 4.5E-23 1.5E-27 136.2 6.7 71 2-77 3-73 (88)
11 2dmx_A DNAJ homolog subfamily 99.9 7.5E-23 2.6E-27 136.1 7.8 76 3-81 6-81 (92)
12 2cug_A Mkiaa0962 protein; DNAJ 99.9 9.2E-23 3.1E-27 134.7 7.9 71 3-78 14-84 (88)
13 2och_A Hypothetical protein DN 99.9 9.7E-23 3.3E-27 130.1 7.3 66 5-77 7-72 (73)
14 2ctp_A DNAJ homolog subfamily 99.9 1.2E-22 4.1E-27 131.2 7.6 71 3-78 4-74 (78)
15 2lgw_A DNAJ homolog subfamily 99.9 1.3E-22 4.6E-27 136.8 7.2 73 6-81 2-74 (99)
16 2o37_A Protein SIS1; HSP40, J- 99.9 4.6E-22 1.6E-26 132.4 6.9 67 4-77 6-72 (92)
17 2l6l_A DNAJ homolog subfamily 99.9 6.1E-22 2.1E-26 143.3 7.7 73 4-76 8-82 (155)
18 3apq_A DNAJ homolog subfamily 99.9 4.3E-22 1.5E-26 149.1 6.2 72 6-81 2-73 (210)
19 3lz8_A Putative chaperone DNAJ 99.8 1.5E-23 5.2E-28 168.1 -3.5 127 4-135 26-170 (329)
20 3hho_A CO-chaperone protein HS 99.8 7E-21 2.4E-25 140.3 6.7 74 4-77 2-78 (174)
21 1fpo_A HSC20, chaperone protei 99.8 1.2E-20 4E-25 138.8 6.1 71 7-77 2-75 (171)
22 2ys8_A RAB-related GTP-binding 99.8 1.2E-20 4E-25 125.2 5.1 62 5-71 26-87 (90)
23 3bvo_A CO-chaperone protein HS 99.8 5.1E-20 1.8E-24 139.0 7.0 73 5-77 42-117 (207)
24 1gh6_A Large T antigen; tumor 99.8 1.6E-20 5.6E-25 129.5 0.4 63 6-76 8-72 (114)
25 1iur_A KIAA0730 protein; DNAJ 99.8 7.4E-20 2.5E-24 120.8 3.3 64 3-69 13-76 (88)
26 1n4c_A Auxilin; four helix bun 99.8 8.3E-20 2.8E-24 135.0 3.8 66 6-72 117-182 (182)
27 1faf_A Large T antigen; J doma 99.8 1.7E-19 5.7E-24 116.9 2.4 60 6-73 11-72 (79)
28 2qwo_B Putative tyrosine-prote 99.8 3.7E-19 1.3E-23 118.2 3.8 59 6-65 33-91 (92)
29 3ag7_A Putative uncharacterize 99.7 3.4E-19 1.2E-23 121.5 3.0 62 5-67 40-104 (106)
30 2pf4_E Small T antigen; PP2A, 99.7 9E-20 3.1E-24 134.0 -0.6 65 5-77 10-76 (174)
31 3uo3_A J-type CO-chaperone JAC 99.7 7.2E-19 2.5E-23 130.2 4.0 66 4-76 9-81 (181)
32 3apo_A DNAJ homolog subfamily 99.7 9.8E-19 3.4E-23 152.4 1.1 75 3-81 18-92 (780)
33 2guz_A Mitochondrial import in 99.7 1.7E-18 5.9E-23 109.9 1.7 57 5-69 13-70 (71)
34 2y4t_A DNAJ homolog subfamily 99.3 3.5E-12 1.2E-16 101.7 5.8 69 6-75 382-450 (450)
35 2guz_B Mitochondrial import in 99.2 1.9E-11 6.4E-16 75.9 3.9 53 6-66 4-59 (65)
36 2ctt_A DNAJ homolog subfamily 96.8 6E-05 2E-09 50.3 -2.5 37 111-147 6-43 (104)
37 1nlt_A Protein YDJ1, mitochond 96.0 0.00031 1.1E-08 53.8 -3.0 43 105-147 9-53 (248)
38 2pzi_A Probable serine/threoni 94.5 0.016 5.5E-07 49.5 2.6 47 4-62 627-675 (681)
39 1exk_A DNAJ protein; extended 85.5 0.26 8.8E-06 30.4 1.0 23 125-147 4-26 (79)
40 3pmq_A Decaheme cytochrome C M 74.9 0.13 4.6E-06 44.4 -4.0 37 111-147 169-206 (669)
41 4a3n_A Transcription factor SO 68.7 11 0.00038 22.0 4.8 41 24-73 14-54 (71)
42 3f27_D Transcription factor SO 63.4 17 0.00057 22.0 5.0 41 24-73 18-58 (83)
43 3nm9_A HMG-D, high mobility gr 62.7 14 0.00049 21.8 4.5 39 24-74 15-53 (73)
44 2crj_A SWI/SNF-related matrix- 62.2 17 0.00059 22.6 5.0 42 24-74 19-60 (92)
45 2cs1_A PMS1 protein homolog 1; 59.2 17 0.00057 22.6 4.5 42 24-74 19-60 (92)
46 1wgf_A Upstream binding factor 58.8 17 0.00057 22.6 4.5 42 24-74 32-73 (90)
47 1hme_A High mobility group pro 58.2 23 0.00077 21.0 4.9 41 24-73 18-58 (77)
48 1i11_A Transcription factor SO 57.1 16 0.00055 22.0 4.1 42 24-74 16-57 (81)
49 3u2b_C Transcription factor SO 56.2 23 0.00078 21.1 4.7 41 24-73 14-54 (79)
50 2e6o_A HMG box-containing prot 55.7 22 0.00077 21.8 4.6 41 24-73 29-69 (87)
51 2d7l_A WD repeat and HMG-box D 53.3 18 0.0006 22.2 3.8 44 24-75 17-60 (81)
52 1gt0_D Transcription factor SO 51.7 18 0.00062 21.7 3.7 41 24-73 14-54 (80)
53 1hry_A Human SRY; DNA, DNA-bin 51.2 18 0.00062 21.4 3.6 41 24-73 16-56 (76)
54 2co9_A Thymus high mobility gr 50.7 23 0.00077 22.5 4.2 42 24-74 29-70 (102)
55 1wz6_A HMG-box transcription f 50.6 19 0.00064 21.8 3.6 41 24-73 19-59 (82)
56 4euw_A Transcription factor SO 49.8 25 0.00084 22.6 4.2 42 23-73 40-81 (106)
57 1j46_A SRY, sex-determining re 49.0 27 0.00092 21.2 4.2 41 24-73 16-56 (85)
58 2lef_A LEF-1 HMG, protein (lym 48.2 26 0.0009 21.3 4.1 41 24-73 14-54 (86)
59 1qqr_A Streptokinase domain B; 47.1 11 0.00039 25.8 2.3 29 9-37 35-63 (138)
60 1k99_A Upstream binding factor 43.3 33 0.0011 21.7 4.0 42 24-74 22-63 (99)
61 1ckt_A High mobility group 1 p 42.6 29 0.00099 20.1 3.5 42 25-73 14-55 (71)
62 1ug2_A 2610100B20RIK gene prod 40.3 19 0.00063 23.2 2.3 22 17-38 67-88 (95)
63 2bx9_A Anti-trap, AT, tryptoph 39.0 8.7 0.0003 21.9 0.6 15 132-146 9-23 (53)
64 1wxl_A Single-strand recogniti 37.6 50 0.0017 19.3 4.0 38 24-73 15-52 (73)
65 3lcz_A YCZA, inhibitor of trap 37.5 11 0.00039 21.4 0.9 14 132-145 9-22 (53)
66 2eqz_A High mobility group pro 37.0 42 0.0014 20.4 3.7 43 24-73 27-69 (86)
67 3tq6_A Transcription factor A, 35.8 60 0.002 23.5 4.9 41 24-73 21-61 (214)
68 3tmm_A Transcription factor A, 35.0 60 0.002 23.9 4.9 42 24-74 53-94 (238)
69 2wwb_B SEC61gamma, protein tra 32.6 81 0.0028 18.8 4.6 20 19-38 10-30 (68)
70 2yrq_A High mobility group pro 31.4 85 0.0029 21.6 5.0 43 24-73 27-69 (173)
71 2gzk_A Sex-determining region 31.0 94 0.0032 21.0 5.1 40 25-73 17-56 (159)
72 2yrq_A High mobility group pro 30.8 95 0.0033 21.3 5.1 40 25-73 114-153 (173)
73 2lxi_A RNA-binding protein 10; 30.1 41 0.0014 20.4 2.8 21 11-31 6-26 (91)
74 2gzk_A Sex-determining region 29.1 1E+02 0.0034 20.8 5.0 41 24-73 100-140 (159)
75 1vq8_S 50S ribosomal protein L 27.5 38 0.0013 21.2 2.2 21 11-31 26-46 (85)
76 2lr8_A CAsp8-associated protei 33.4 13 0.00044 22.6 0.0 22 17-38 47-68 (70)
77 2cqn_A Formin-binding protein 26.5 1.1E+02 0.0038 18.5 5.3 54 18-74 6-60 (77)
78 3r8s_T 50S ribosomal protein L 25.7 43 0.0015 21.3 2.3 20 11-30 31-50 (93)
79 2zjr_Q 50S ribosomal protein L 25.4 43 0.0015 21.3 2.3 21 11-31 26-46 (95)
80 3j21_T 50S ribosomal protein L 24.3 47 0.0016 20.8 2.2 21 11-31 27-47 (86)
81 3bbz_A P protein, phosphoprote 23.8 1E+02 0.0035 17.2 3.3 27 52-78 4-30 (49)
82 1xs0_A Inhibitor of vertebrate 23.7 85 0.0029 21.4 3.6 31 9-39 94-126 (136)
83 1aab_A High mobility group pro 23.4 71 0.0024 19.1 2.9 43 24-73 19-61 (83)
84 3tve_T 50S ribosomal protein L 23.4 50 0.0017 20.9 2.2 20 11-30 25-44 (92)
85 2rq5_A Protein jumonji; develo 23.1 1.1E+02 0.0036 20.3 3.9 49 25-75 64-112 (121)
86 1iqt_A AUF1, heterogeneous nuc 22.6 72 0.0025 17.9 2.8 21 11-31 4-24 (75)
87 1xou_B Z5138 gene product; coi 22.1 80 0.0027 19.4 2.9 26 48-76 50-75 (95)
88 2b7e_A PRE-mRNA processing pro 21.7 1.3E+02 0.0044 17.4 4.2 48 21-75 3-55 (59)
89 1cg7_A Protein (NON histone pr 20.9 95 0.0032 19.0 3.2 47 26-74 27-73 (93)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=5.2e-24 Score=137.92 Aligned_cols=73 Identities=47% Similarity=0.719 Sum_probs=66.1
Q ss_pred CCCCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhccc
Q 032067 2 SDTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLS 78 (148)
Q Consensus 2 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 78 (148)
+....|||+||||+++++.++||+|||+|++++|||+++.++ .+.+.|++|++||++|+||.+|..||..+..
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCT----THHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence 356789999999999999999999999999999999976554 5789999999999999999999999997654
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=141.80 Aligned_cols=71 Identities=38% Similarity=0.647 Sum_probs=65.0
Q ss_pred CCCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcc
Q 032067 3 DTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLL 77 (148)
Q Consensus 3 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 77 (148)
....|||+||||+++|+.++||+|||+|++++|||+++.++ .+.++|++|++||++|+||.+|..||..+.
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA----EAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCS----HHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 45679999999999999999999999999999999976554 688999999999999999999999998654
No 3
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=144.63 Aligned_cols=74 Identities=30% Similarity=0.504 Sum_probs=67.4
Q ss_pred CCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcccccC
Q 032067 4 TGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLSLLA 81 (148)
Q Consensus 4 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~ 81 (148)
...|||+||||+++|+.++||+|||+|++++|||+++.++ .+.+.|++|++||++|+||.+|..||..+..+..
T Consensus 18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP----KAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCS----THHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 4579999999999999999999999999999999976555 5889999999999999999999999998776654
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=136.18 Aligned_cols=74 Identities=51% Similarity=0.753 Sum_probs=65.9
Q ss_pred CCCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcccc
Q 032067 3 DTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLSL 79 (148)
Q Consensus 3 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~ 79 (148)
....|||+||||+++++.++||+|||+|++++|||+++. ..+.+.+.|++|++||++|+||.+|..||..+..+
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 79 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE---NKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP 79 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCST---THHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 456799999999999999999999999999999999643 33478899999999999999999999999976544
No 5
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.89 E-value=2.9e-23 Score=133.80 Aligned_cols=72 Identities=46% Similarity=0.736 Sum_probs=64.7
Q ss_pred CcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcccccC
Q 032067 5 GACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLSLLA 81 (148)
Q Consensus 5 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~ 81 (148)
+.|||+||||+++++.++||+|||+|++++|||+++. + .+.+.|+.|++||++|+||.+|..||..+..+..
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-P----GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-T----THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----cHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 5799999999999999999999999999999999642 2 5778999999999999999999999998766544
No 6
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.89 E-value=3e-23 Score=142.09 Aligned_cols=91 Identities=32% Similarity=0.418 Sum_probs=75.2
Q ss_pred CCCcccccccCcCCCC-CHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcccccC
Q 032067 3 DTGACYYSVLGLHKQA-SASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLSLLA 81 (148)
Q Consensus 3 ~~~~d~Y~iLgv~~~a-~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~ 81 (148)
....|||+||||+++| +.++||+|||+|++++|||+++. +...+.+.+.|++|++||++|+||.+|..||..+...
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~-~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~-- 88 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN-KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP-- 88 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT--
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc--
Confidence 3568999999999999 99999999999999999999754 3344578999999999999999999999999987543
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 032067 82 DDDDEEFCDFMQEMALMM 99 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ 99 (148)
++.|.+|+..+...+
T Consensus 89 ---~~~~~~~~~~~~~~~ 103 (109)
T 2qsa_A 89 ---DQRFYNYYQYYRLRA 103 (109)
T ss_dssp ---TCHHHHHHHHHHHC-
T ss_pred ---hHHHHHHHHHHHHHh
Confidence 245666666555443
No 7
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.88 E-value=2.1e-23 Score=139.12 Aligned_cols=75 Identities=28% Similarity=0.519 Sum_probs=66.6
Q ss_pred CCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCC--chhhHHHHHHHHHHHHHHHccchHHHHHHHhhccc
Q 032067 4 TGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDP--TAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLS 78 (148)
Q Consensus 4 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~--~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 78 (148)
...|||+||||+++|+.++||+|||+|++++|||+++.+. .....+.+.|++|++||++|+||.+|..||..+..
T Consensus 14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 4579999999999999999999999999999999976432 23457899999999999999999999999997754
No 8
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=6e-23 Score=140.73 Aligned_cols=72 Identities=46% Similarity=0.787 Sum_probs=65.4
Q ss_pred CCCCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcc
Q 032067 2 SDTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLL 77 (148)
Q Consensus 2 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 77 (148)
+....|||+||||+++|+.++||+|||+|++++|||+++.++ .+.++|++|++||++|+||.+|..||..+.
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP----EAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCH----HHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 456689999999999999999999999999999999975543 688999999999999999999999998654
No 9
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.88 E-value=1.4e-23 Score=142.47 Aligned_cols=73 Identities=45% Similarity=0.750 Sum_probs=66.1
Q ss_pred CcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcccccC
Q 032067 5 GACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLSLLA 81 (148)
Q Consensus 5 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~ 81 (148)
..|||+||||+++|+.++||+|||+|++++|||+++.++ .+.++|++|++||++|+||.+|..||..+.....
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTC----THHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 479999999999999999999999999999999976544 5778999999999999999999999998766554
No 10
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4.5e-23 Score=136.22 Aligned_cols=71 Identities=42% Similarity=0.713 Sum_probs=64.1
Q ss_pred CCCCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcc
Q 032067 2 SDTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLL 77 (148)
Q Consensus 2 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 77 (148)
+....|||+||||+++|+.++||+|||+|++++|||+++ + ..+.+.|++|++||++|+||.+|..||..+.
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-S----PDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-S----HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-C----hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 355689999999999999999999999999999999964 2 2688999999999999999999999998654
No 11
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=7.5e-23 Score=136.12 Aligned_cols=76 Identities=45% Similarity=0.756 Sum_probs=66.8
Q ss_pred CCCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcccccC
Q 032067 3 DTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLSLLA 81 (148)
Q Consensus 3 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~ 81 (148)
....|||+||||+++++.++||+|||+|++++|||+++.+ .+.+.++|++|++||++|+||.+|..||..+...+.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN---KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR 81 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC---SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 4457999999999999999999999999999999996543 247889999999999999999999999997765443
No 12
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=9.2e-23 Score=134.74 Aligned_cols=71 Identities=44% Similarity=0.671 Sum_probs=64.0
Q ss_pred CCCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhccc
Q 032067 3 DTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLS 78 (148)
Q Consensus 3 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 78 (148)
....|||+||||+++++.++||+|||+|++++|||+++. + .+.+.|++|++||++|+||.+|..||..+..
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-P----GAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-T----THHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-h----hHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 456799999999999999999999999999999999643 2 5789999999999999999999999987643
No 13
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.88 E-value=9.7e-23 Score=130.13 Aligned_cols=66 Identities=48% Similarity=0.812 Sum_probs=59.5
Q ss_pred CcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcc
Q 032067 5 GACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLL 77 (148)
Q Consensus 5 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 77 (148)
..|||+||||+++++.++||+|||+|++++|||+++.+ .+.|++|++||++|+||.+|..||..+.
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-------AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-------HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-------HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 46899999999999999999999999999999996432 4789999999999999999999998653
No 14
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=131.19 Aligned_cols=71 Identities=39% Similarity=0.649 Sum_probs=64.1
Q ss_pred CCCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhccc
Q 032067 3 DTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLS 78 (148)
Q Consensus 3 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 78 (148)
....|||+||||+++++.++||+|||+|++++|||+++. ..+.+.|++|++||++|+||.+|..||..+..
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-----PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-----HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 456899999999999999999999999999999999632 26789999999999999999999999987654
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=136.80 Aligned_cols=73 Identities=42% Similarity=0.722 Sum_probs=63.7
Q ss_pred cccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcccccC
Q 032067 6 ACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLSLLA 81 (148)
Q Consensus 6 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~ 81 (148)
.|||+||||+++|+.++||+|||+|++++|||+++.+ .+.+.+.|++|++||++|+||.+|..||..+..+..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~---~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN---KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC---CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 5899999999999999999999999999999996443 346889999999999999999999999997655443
No 16
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.6e-22 Score=132.42 Aligned_cols=67 Identities=39% Similarity=0.700 Sum_probs=60.4
Q ss_pred CCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcc
Q 032067 4 TGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLL 77 (148)
Q Consensus 4 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 77 (148)
...|||+||||+++++.++||+|||+|++++|||+++.+ .+.|++|++||++|+||.+|..||..+.
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-------TEKFKEISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-------HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-------HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence 347999999999999999999999999999999996433 3589999999999999999999998654
No 17
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.86 E-value=6.1e-22 Score=143.28 Aligned_cols=73 Identities=29% Similarity=0.554 Sum_probs=65.8
Q ss_pred CCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCC--chhhHHHHHHHHHHHHHHHccchHHHHHHHhhc
Q 032067 4 TGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDP--TAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGL 76 (148)
Q Consensus 4 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~--~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 76 (148)
...|||+||||+++++.++||+|||+|++++|||+++.++ ..++.+.+.|++|++||++|+||.+|+.||..+
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4579999999999999999999999999999999987654 344568899999999999999999999999754
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.85 E-value=4.3e-22 Score=149.08 Aligned_cols=72 Identities=44% Similarity=0.648 Sum_probs=65.4
Q ss_pred cccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcccccC
Q 032067 6 ACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLSLLA 81 (148)
Q Consensus 6 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~ 81 (148)
.|||+||||+++|+.++||+|||+|++++|||+++.++ .+.++|++|++||++|+||.+|+.||..+..+..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~----~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 73 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 73 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCT----THHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence 58999999999999999999999999999999976555 5789999999999999999999999997765443
No 19
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.85 E-value=1.5e-23 Score=168.11 Aligned_cols=127 Identities=24% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcccc----
Q 032067 4 TGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLSL---- 79 (148)
Q Consensus 4 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~---- 79 (148)
...|||+||||+++|+.++||+|||+|+++||||+++. + .|.++|++|++||++|+||.+|+.||..+...
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~ 100 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-N----DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPG 100 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-h----HHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCC
Confidence 34799999999999999999999999999999999532 2 67899999999999999999999999863221
Q ss_pred cCC--------CCcHHHHHHHHHHHHhhhh----cCCCCCch-HhHHHHHHHHHhccc-CcccccccCCC
Q 032067 80 LAD--------DDDEEFCDFMQEMALMMES----VSPQEGYT-LEHLQGLLTDMIANE-QRIGFGFADGC 135 (148)
Q Consensus 80 ~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~g~~-~~~~~~~f~~~~~g~-~~~~~~~~~~c 135 (148)
+.. .....|.++|..++..+.. ..+..|.+ ..++.+.|++++.|+ +.|.+...+.|
T Consensus 101 ~~~~~~~~~~~f~~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~ 170 (329)
T 3lz8_A 101 FGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN 170 (329)
T ss_dssp ------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC
T ss_pred cccccccccCCcCCCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec
Confidence 100 0112355666555443211 11234445 467888999999998 66777765533
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.83 E-value=7e-21 Score=140.29 Aligned_cols=74 Identities=27% Similarity=0.445 Sum_probs=64.3
Q ss_pred CCcccccccCcCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCc-hhhHHHHHHHHHHHHHHHccchHHHHHHHhhcc
Q 032067 4 TGACYYSVLGLHKQAS--ASEIRDAYRKLALKWHPDRWMKDPT-AAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLL 77 (148)
Q Consensus 4 ~~~d~Y~iLgv~~~a~--~~eIk~ayr~l~~~~HPDk~~~~~~-~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 77 (148)
...|||+||||+++++ .++||++||+|++++|||+++..+. .+..+.+.|+.|++||++|+||.+|..||..+.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 4679999999999987 9999999999999999999876543 233488999999999999999999999998664
No 21
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.82 E-value=1.2e-20 Score=138.75 Aligned_cols=71 Identities=20% Similarity=0.380 Sum_probs=64.0
Q ss_pred ccccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCc-hhhHHHHHHHHHHHHHHHccchHHHHHHHhhcc
Q 032067 7 CYYSVLGLHKQA--SASEIRDAYRKLALKWHPDRWMKDPT-AAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLL 77 (148)
Q Consensus 7 d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPDk~~~~~~-~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 77 (148)
|||+||||++++ +..+||++||+|++++|||+++.++. .+..+.+.|+.|++||++|+||.+|+.||..+.
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 799999999999 99999999999999999999876543 344678999999999999999999999998654
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=125.17 Aligned_cols=62 Identities=31% Similarity=0.493 Sum_probs=55.8
Q ss_pred CcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHH
Q 032067 5 GACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTV 71 (148)
Q Consensus 5 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 71 (148)
..|||+||||+++|+.++||+|||+|++++|||+++. + .+.+.|++|++||++|+||.+|..
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~----~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-P----GSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-T----THHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----cHHHHHHHHHHHHHHHCCcccccC
Confidence 4799999999999999999999999999999999642 2 567889999999999999998853
No 23
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.80 E-value=5.1e-20 Score=139.02 Aligned_cols=73 Identities=18% Similarity=0.344 Sum_probs=64.1
Q ss_pred CcccccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-hhhHHHHHHHHHHHHHHHccchHHHHHHHhhcc
Q 032067 5 GACYYSVLGLHKQ--ASASEIRDAYRKLALKWHPDRWMKDPT-AAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLL 77 (148)
Q Consensus 5 ~~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPDk~~~~~~-~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 77 (148)
..|||+||||+++ ++.++||++||+|++++|||+++.++. ++..+.+.|+.|++||++|+||.+|+.||..+.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 5799999999996 799999999999999999999876542 345688999999999999999999999997543
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.78 E-value=1.6e-20 Score=129.52 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=57.2
Q ss_pred cccccccCcCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhc
Q 032067 6 ACYYSVLGLHKQASA--SEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGL 76 (148)
Q Consensus 6 ~d~Y~iLgv~~~a~~--~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 76 (148)
.+||+||||+++|+. ++||+|||+|++++|||+++. .++|++|++||++|+||.+|+.||...
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--------~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--------TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--------HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 589999999999998 999999999999999999532 368999999999999999999999643
No 25
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.78 E-value=7.4e-20 Score=120.83 Aligned_cols=64 Identities=28% Similarity=0.322 Sum_probs=56.6
Q ss_pred CCCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHH
Q 032067 3 DTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKR 69 (148)
Q Consensus 3 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R 69 (148)
....++|+||||+++|+.++||+|||+|+++||||+++.+ .+.+.++|++|++||++|++...|
T Consensus 13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~---~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN---HDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---hHHHHHHHHHHHHHHHHHHhhccc
Confidence 3456899999999999999999999999999999996433 347899999999999999998776
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.77 E-value=8.3e-20 Score=135.01 Aligned_cols=66 Identities=21% Similarity=0.459 Sum_probs=59.8
Q ss_pred cccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHH
Q 032067 6 ACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 72 (148)
Q Consensus 6 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Y 72 (148)
.|||+||||++.|+.++||+|||+|++++|||+++.++.+ ..+.++|++|++||++|+||.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e-~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYE-QYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTH-HHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchH-HHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 6899999999999999999999999999999998655432 35899999999999999999999876
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.76 E-value=1.7e-19 Score=116.88 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=54.2
Q ss_pred cccccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 6 ACYYSVLGLHKQ--ASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 6 ~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.++|+||||+++ ++.++||+|||+|++++|||+++ ..+.|++|++||++|+++.+|..++
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~--------~~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG--------SHALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC--------CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--------CHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 579999999999 99999999999999999999952 1378999999999999999998754
No 28
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.75 E-value=3.7e-19 Score=118.21 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=52.6
Q ss_pred cccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccc
Q 032067 6 ACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSD 65 (148)
Q Consensus 6 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd 65 (148)
.++|++|||++.|+.++||+|||++++++|||++++++.. ..|.++|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~-~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYE-QYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTH-HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhH-hHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999998765432 3688999999999999975
No 29
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.75 E-value=3.4e-19 Score=121.47 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=53.5
Q ss_pred CcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC---CCchhhHHHHHHHHHHHHHHHccchH
Q 032067 5 GACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMK---DPTAAGEANRRFQQIQEAYSVLSDAA 67 (148)
Q Consensus 5 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~---~~~~~~~a~~~f~~i~~Ay~~Lsd~~ 67 (148)
..|||+||+++. |+.++||+|||++++++||||++. ++.....|.++|+.|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 469999999996 999999999999999999999753 22233468999999999999999975
No 30
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.74 E-value=9e-20 Score=134.00 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=56.5
Q ss_pred CcccccccCcCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcc
Q 032067 5 GACYYSVLGLHKQAS--ASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLL 77 (148)
Q Consensus 5 ~~d~Y~iLgv~~~a~--~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~ 77 (148)
..|||+||||+++|+ .++||+|||++++++|||+++. .++|++|++||++|+||.+|+.||..+.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--------~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 368999999999998 6999999999999999999532 2689999999999999999999998653
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.74 E-value=7.2e-19 Score=130.24 Aligned_cols=66 Identities=26% Similarity=0.468 Sum_probs=59.3
Q ss_pred CCccccccc------CcCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhc
Q 032067 4 TGACYYSVL------GLHK-QASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGL 76 (148)
Q Consensus 4 ~~~d~Y~iL------gv~~-~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 76 (148)
...|||+|| |+++ +++.++||+|||+|++++|||+++. +.+.|+.|++||++|+||.+|..||..+
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-------a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-------GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-------CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-------HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 457999999 4765 8999999999999999999999643 4578999999999999999999999977
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.71 E-value=9.8e-19 Score=152.45 Aligned_cols=75 Identities=43% Similarity=0.620 Sum_probs=40.7
Q ss_pred CCCcccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhhcccccC
Q 032067 3 DTGACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAGLLSLLA 81 (148)
Q Consensus 3 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~~~~~~ 81 (148)
....|||+||||+++|+.++||+|||+|++++|||+++.++ .+.++|++|++||++|+||.+|+.||..+..+..
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~----~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~ 92 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 92 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC---------------------------CTHHHHHHSHHHHHHHTTC------
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHHcChHHHHHHHhhcccccc
Confidence 34579999999999999999999999999999999975554 6789999999999999999999999997765544
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.7e-18 Score=109.88 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=50.2
Q ss_pred CcccccccCcCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHH
Q 032067 5 GACYYSVLGLHK-QASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKR 69 (148)
Q Consensus 5 ~~d~Y~iLgv~~-~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R 69 (148)
..++|+||||++ +++.++||+|||+|++++|||+. ++ .+.|++|++||++|+++..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g~-------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GS-------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-CC-------HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CC-------HHHHHHHHHHHHHHhhhhhc
Confidence 468999999999 79999999999999999999994 22 25899999999999987654
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.27 E-value=3.5e-12 Score=101.71 Aligned_cols=69 Identities=42% Similarity=0.754 Sum_probs=56.4
Q ss_pred cccccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhh
Q 032067 6 ACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAG 75 (148)
Q Consensus 6 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~ 75 (148)
.++|++||+.+.++.++|+++|+++++++|||+.+. +.++..+.+.|+.|++||++|+||.+|..||++
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~-~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN-EEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS-HHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 489999999999999999999999999999999632 222457899999999999999999999999974
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.9e-11 Score=75.93 Aligned_cols=53 Identities=9% Similarity=0.009 Sum_probs=45.4
Q ss_pred cccccccCcCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccch
Q 032067 6 ACYYSVLGLHKQ---ASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDA 66 (148)
Q Consensus 6 ~d~Y~iLgv~~~---a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~ 66 (148)
...|.||||++. ++.++|+++||+|+..+|||+- +.+ ....+|+.|+++|...
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG-GS~-------yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSF-------YLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC-CCH-------HHHHHHHHHHHHHHHH
Confidence 456899999999 9999999999999999999993 333 6778899999998654
No 36
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.81 E-value=6e-05 Score=50.27 Aligned_cols=37 Identities=8% Similarity=0.200 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhccc-CcccccccCCCCCCCCCCCCCCC
Q 032067 111 EHLQGLLTDMIANE-QRIGFGFADGCDSHFQSARKKGS 147 (148)
Q Consensus 111 ~~~~~~f~~~~~g~-~~~~~~~~~~c~~c~g~g~~~g~ 147 (148)
.++.+.|+|++.|. +.|.+.....|+.|.|+|+++|+
T Consensus 6 ~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~ 43 (104)
T 2ctt_A 6 SGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGT 43 (104)
T ss_dssp CCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTC
T ss_pred EEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCC
Confidence 35677899999998 78999999999999999999986
No 37
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.02 E-value=0.00031 Score=53.76 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=36.9
Q ss_pred CCCch-HhHHHHHHHHHhccc-CcccccccCCCCCCCCCCCCCCC
Q 032067 105 QEGYT-LEHLQGLLTDMIANE-QRIGFGFADGCDSHFQSARKKGS 147 (148)
Q Consensus 105 ~~g~~-~~~~~~~f~~~~~g~-~~~~~~~~~~c~~c~g~g~~~g~ 147 (148)
..|.+ ..++...|+|++.|. +.|.+.....|++|.|+|+++|+
T Consensus 9 ~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~ 53 (248)
T 1nlt_A 9 QRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA 53 (248)
T ss_dssp CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT
T ss_pred CCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC
Confidence 34555 467889999999998 78999999999999999999885
No 38
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.55 E-value=0.016 Score=49.53 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=36.2
Q ss_pred CCcccccccCcCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 032067 4 TGACYYSVLGLHKQASA--SEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSV 62 (148)
Q Consensus 4 ~~~d~Y~iLgv~~~a~~--~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~ 62 (148)
..++||.|||++.+... .+|++|||++++..+++ .+++..|..|..|
T Consensus 627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------------RHRYTLVDMANKV 675 (681)
T ss_dssp CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------------HHHHHHHHHHHHH
T ss_pred cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------------HHHHHHHHHhccc
Confidence 45679999999776544 67999999999966554 2577788887765
No 39
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=85.48 E-value=0.26 Score=30.37 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=17.7
Q ss_pred CcccccccCCCCCCCCCCCCCCC
Q 032067 125 QRIGFGFADGCDSHFQSARKKGS 147 (148)
Q Consensus 125 ~~~~~~~~~~c~~c~g~g~~~g~ 147 (148)
..|.+.....|+.|.|+|..+++
T Consensus 4 ~~i~~~~~~~C~~C~G~G~~~~~ 26 (79)
T 1exk_A 4 KEIRIPTLEECDVCHGSGAKPGT 26 (79)
T ss_dssp TSCCCCCEEECGGGTTTSBCSSS
T ss_pred EEEEcccceECCCCcccccCCCc
Confidence 56778888888888888877654
No 40
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=74.89 E-value=0.13 Score=44.44 Aligned_cols=37 Identities=11% Similarity=-0.050 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhccc-CcccccccCCCCCCCCCCCCCCC
Q 032067 111 EHLQGLLTDMIANE-QRIGFGFADGCDSHFQSARKKGS 147 (148)
Q Consensus 111 ~~~~~~f~~~~~g~-~~~~~~~~~~c~~c~g~g~~~g~ 147 (148)
.++...|+++..|. +++.+.....|.+|.|+|+++|+
T Consensus 169 ~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt 206 (669)
T 3pmq_A 169 TNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGG 206 (669)
T ss_dssp CCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTT
T ss_pred EEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCc
Confidence 46677899998887 78999999999999999999996
No 41
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=68.69 E-value=11 Score=21.96 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDL---------HNAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTS---------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 566778888889986 24578889999999998665544433
No 42
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=63.36 E-value=17 Score=21.97 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDL---------HNAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSS---------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 566788888889986 24578889999999998665544433
No 43
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=62.72 E-value=14 Score=21.80 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHh
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDA 74 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 74 (148)
.+.+|..++.-||+. ...+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGI---------KVTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSC---------CHHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHcCCc---hHHHHH
Confidence 456777788889986 245788899999999987 666664
No 44
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=62.20 E-value=17 Score=22.55 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHh
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDA 74 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 74 (148)
.+.+|..++.-||+. ...++.+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDL---------PFPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTC---------CHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456777788889986 345788899999999997776555543
No 45
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.16 E-value=17 Score=22.63 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHh
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDA 74 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 74 (148)
.+..|..++.-||+. ...++.+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 19 VQDHRPQFLIENPKT---------SLEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHHCCSS---------CHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 456677778889986 245788999999999996665555444
No 46
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=58.80 E-value=17 Score=22.56 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHh
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDA 74 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 74 (148)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 32 ~~~~r~~~k~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 32 SEEKRRQLQEERPEL---------SESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp HHHTHHHHHHHCTTS---------CHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 456677778889985 345788999999999997665554443
No 47
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=58.18 E-value=23 Score=21.01 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+..|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (77)
T 1hme_A 18 CSEYRPKIKGEHPGL---------SIGDVAKKLGEMWNNTAADDKQPYEK 58 (77)
T ss_dssp HHHHHHHHHHHCTTC---------CHHHHHHHHHHHHHHSCGGGSHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455677777789986 24578899999999999665544433
No 48
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=57.12 E-value=16 Score=22.02 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHh
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDA 74 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 74 (148)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDM---------HNSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSC---------CHHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 456677777788875 245788899999999997665554443
No 49
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=56.20 E-value=23 Score=21.06 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (79)
T 3u2b_C 14 SQIERRKIMEQSPDM---------HNAEISKRLGKRWKLLKDSDKIPFIQ 54 (79)
T ss_dssp HHHHHHHHHTTSTTS---------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 456777778888876 24578889999999998655444333
No 50
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=55.68 E-value=22 Score=21.76 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+.+|..++.-||+. ...++.+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~~~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~y~~ 69 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGK---------DNRAISVILGDRWKKMKNEERRMYTL 69 (87)
T ss_dssp HHHTHHHHHHHCTTS---------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 566777788889985 24577889999999998665544433
No 51
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.28 E-value=18 Score=22.25 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhh
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAG 75 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~ 75 (148)
-+.+|...+.-||+.. ...+..+.|.+.|..|++.++....+..
T Consensus 17 ~~e~R~~ik~~~P~~~--------~~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS--------DEADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCC--------SHHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCc--------hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888888899862 1357888999999999976666555543
No 52
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=51.67 E-value=18 Score=21.66 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (80)
T 1gt0_D 14 SRGQRRKMAQENPKM---------HNSEISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHHHTTSTTS---------CHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455677777788875 24577889999999998665544444
No 53
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=51.23 E-value=18 Score=21.39 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+.+|..++.-||+.. + .+..+.|.+.|..|++.++....+
T Consensus 16 ~~~~r~~~~~~~p~~~--~-------~eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 16 SRDQRRKMALENPRMR--N-------SEISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHHCSCCS--S-------SHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC--H-------HHHHHHHHhHHHhCCHHHHHHHHH
Confidence 4567777788899862 2 256788999999998655444333
No 54
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.72 E-value=23 Score=22.53 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHh
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDA 74 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 74 (148)
.+.+|..++.-||+. ...++.+.|.+.|..|++.++....+.
T Consensus 29 ~~~~r~~i~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~~~ 70 (102)
T 2co9_A 29 FRDTQAAIKGQNPNA---------TFGEVSKIVASMWDGLGEEQKQVYKKK 70 (102)
T ss_dssp HHHHHHHHHHHCTTS---------CHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 456677777889986 245788899999999986665555443
No 55
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=50.59 E-value=19 Score=21.78 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~~y~~ 59 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD---------NRGATKILADWWAVLDPKEKQKYTD 59 (82)
T ss_dssp HHHHHHHHHHHCSSSC---------TTHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 5667778888899862 2367788999999998665544433
No 56
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=49.77 E-value=25 Score=22.58 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 23 IRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 23 Ik~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
-.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 40 F~~~~r~~~k~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~~ 81 (106)
T 4euw_A 40 WAQAARRKLADQYPHL---------HNAELSKTLGKLWRLLNESEKRPFVE 81 (106)
T ss_dssp HHHHHHHHHHHHCTTS---------CHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3667788888889986 23578889999999998665554444
No 57
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=49.00 E-value=27 Score=21.25 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 16 ~~~~r~~~~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (85)
T 1j46_A 16 SRDQRRKMALENPRM---------RNSEISKQLGYQWKMLTEAEKWPFFQ 56 (85)
T ss_dssp HHHHHHHHHHHSTTS---------CHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 456677777889986 24577889999999998655444333
No 58
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=48.16 E-value=26 Score=21.29 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (86)
T 2lef_A 14 MKEMRANVVAESTLK---------ESAAINQILGRRWHALSREEQAKYYE 54 (86)
T ss_dssp HHHHHHHHHHHSSCC---------CHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 455677777889986 23577889999999998655444333
No 59
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=47.08 E-value=11 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=25.9
Q ss_pred ccccCcCCCCCHHHHHHHHHHHHHHhCCC
Q 032067 9 YSVLGLHKQASASEIRDAYRKLALKWHPD 37 (148)
Q Consensus 9 Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD 37 (148)
+..|-|....+.+|++++=..+..++||+
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 56777778889999999999999999998
No 60
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=43.34 E-value=33 Score=21.66 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHh
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDA 74 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 74 (148)
.+..|..++.-||+. ...++.+.|.+.|..|++.++....+.
T Consensus 22 ~~~~r~~ik~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~~~ 63 (99)
T 1k99_A 22 FMEKRAKYAKLHPEM---------SNLDLTKILSKKYKELPEKKKMKYIQD 63 (99)
T ss_dssp HHHHHHHHHTTCTTS---------CSHHHHHHHHHHHHHSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455677777778875 234788899999999997766655554
No 61
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=42.64 E-value=29 Score=20.09 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 25 DAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 25 ~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
+..|...+.-||+.. + ...+..+.|.+.|..|++.++....+
T Consensus 14 ~~~r~~~~~~~p~~~--~-----~~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 14 QTCREEHKKKHPDAS--V-----NFSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHHCTTCC--C-----CHHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHHCCCCC--C-----cHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 445666677899862 1 12477889999999998766544433
No 62
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=40.34 E-value=19 Score=23.15 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 032067 17 QASASEIRDAYRKLALKWHPDR 38 (148)
Q Consensus 17 ~a~~~eIk~ayr~l~~~~HPDk 38 (148)
+-++++|+.+|+.|++.+|-..
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4688899999999999887554
No 63
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=38.98 E-value=8.7 Score=21.93 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=11.4
Q ss_pred cCCCCCCCCCCCCCC
Q 032067 132 ADGCDSHFQSARKKG 146 (148)
Q Consensus 132 ~~~c~~c~g~g~~~g 146 (148)
...|+.|.|+|...+
T Consensus 9 ~~~C~~C~GsG~~~~ 23 (53)
T 2bx9_A 9 EVACPKCERAGEIEG 23 (53)
T ss_dssp EEECTTTTTSSEETT
T ss_pred cccCCCCcceeccCC
Confidence 346999999997643
No 64
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=37.60 E-value=50 Score=19.28 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+..|..++.-||+. ...+..+.|.+.|..| ..|..|.
T Consensus 15 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~l---~eK~~y~ 52 (73)
T 1wxl_A 15 LNDTRESIKRENPGI---------KVTEIAKKGGEMWKEL---KDKSKWE 52 (73)
T ss_dssp HHHHHHHHHHHSTTC---------CHHHHHHHHHHHHHTC---TTHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhh---HhhHHHH
Confidence 455677777889986 2357888999999999 4445554
No 65
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=37.54 E-value=11 Score=21.42 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=11.1
Q ss_pred cCCCCCCCCCCCCC
Q 032067 132 ADGCDSHFQSARKK 145 (148)
Q Consensus 132 ~~~c~~c~g~g~~~ 145 (148)
...|+.|.|+|...
T Consensus 9 ~~~C~~C~GsG~~i 22 (53)
T 3lcz_A 9 ETTCPNCNGSGREE 22 (53)
T ss_dssp EEECTTTTTSCEET
T ss_pred eccCcCCcccccCC
Confidence 45799999999754
No 66
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.95 E-value=42 Score=20.38 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
-+..|..++.-||+... ...+..+.|.+.|..|++.++....+
T Consensus 27 ~~~~r~~~k~~~p~~~~-------~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPV-------NFAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHHCTTSCC-------CHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-------cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45566777778998621 12477889999999998665544444
No 67
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=35.79 E-value=60 Score=23.50 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
-+..|...+.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 21 ~~~~r~~~k~~~P~~---------~~~eisk~lge~Wk~Ls~~EK~~y~~ 61 (214)
T 3tq6_A 21 SKEQLPIFKAQNPDA---------KTTELIRRIAQRWRELPDSKKKIYQD 61 (214)
T ss_dssp HHHHHHHHHHHCTTS---------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC---------CHHHHHHHHHHHHHccCHHhhhHHHH
Confidence 456677778889986 24678889999999999776655544
No 68
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=34.96 E-value=60 Score=23.92 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHh
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDA 74 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 74 (148)
-+.+|...+.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 53 ~~e~r~~~k~~~P~~---------~~~eisk~lge~Wk~Ls~~EK~~y~~~ 94 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDA---------KTTELIRRIAQRWRELPDSKKKIYQDA 94 (238)
T ss_dssp HHHHHHHHHHHSTTS---------CHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455667777788986 246788899999999997766655543
No 69
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=32.65 E-value=81 Score=18.83 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHHhC-CCC
Q 032067 19 SASEIRDAYRKLALKWH-PDR 38 (148)
Q Consensus 19 ~~~eIk~ayr~l~~~~H-PDk 38 (148)
...+.-+.|+++.++++ ||+
T Consensus 10 ~~~~f~k~~~r~lk~~~KPdr 30 (68)
T 2wwb_B 10 PSRQFVKDSIRLVKRCTKPDR 30 (68)
T ss_dssp THHHHHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHHhcCCCH
Confidence 56678888888888886 876
No 70
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.37 E-value=85 Score=21.59 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
-+..|..++.-||+.. . ...+..+.|.+.|..|++.++....+
T Consensus 27 ~~~~r~~~k~~~p~~~---~----~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (173)
T 2yrq_A 27 VQTCREEHKKKHPDAS---V----NFSEFSKKCSERWKTMSAKEKGKFED 69 (173)
T ss_dssp HHHHHHHHHHHCTTCC---C----CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---C----CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5566777788899841 0 23577888999999999776644433
No 71
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=31.00 E-value=94 Score=20.96 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 25 DAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 25 ~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
...+..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 17 ~~~~~ki~~~~P~~---------~~~eisk~lg~~Wk~ls~~eK~~y~~ 56 (159)
T 2gzk_A 17 RDQRRKMALENPRM---------RNSEISKQLGYQWKMLTEAEKWPFFQ 56 (159)
T ss_dssp HHHHHHHHHHCSSC---------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHhhHHHhccHHH
Confidence 33455566789985 24578889999999998776654444
No 72
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.80 E-value=95 Score=21.31 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 25 DAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 25 ~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
+.+|..++.-||+. ...++.+.|.+.|..|++.++....+
T Consensus 114 ~~~r~~~~~~~p~~---------~~~ei~k~lg~~Wk~ls~~eK~~y~~ 153 (173)
T 2yrq_A 114 SEYRPKIKGEHPGL---------SIGDVAKKLGEMWNNTAADDKQPYEK 153 (173)
T ss_dssp HHHHHHHHHHCSSS---------CHHHHHHHHHHHHHHSCGGGHHHHHH
T ss_pred HHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34444555556654 23567888999999998766555444
No 73
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=30.07 E-value=41 Score=20.35 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.0
Q ss_pred ccCcCCCCCHHHHHHHHHHHH
Q 032067 11 VLGLHKQASASEIRDAYRKLA 31 (148)
Q Consensus 11 iLgv~~~a~~~eIk~ayr~l~ 31 (148)
|=|||++++.++|++.|.+.-
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 448999999999999998764
No 74
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=29.13 E-value=1e+02 Score=20.81 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+
T Consensus 100 ~~~~r~~~~~~~p~~---------~~~ei~k~lg~~Wk~ls~~eK~~y~~ 140 (159)
T 2gzk_A 100 CSEYRPKIKGEHPGL---------SIGDVAKKLGEMWNNTAADDKQPYEK 140 (159)
T ss_dssp HHHHHHHHHHHCSCC---------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHhhHHHHHHhCCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455666667778875 24577889999999998655444333
No 75
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=27.47 E-value=38 Score=21.17 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.8
Q ss_pred ccCcCCCCCHHHHHHHHHHHH
Q 032067 11 VLGLHKQASASEIRDAYRKLA 31 (148)
Q Consensus 11 iLgv~~~a~~~eIk~ayr~l~ 31 (148)
++-|++.|+..|||+|-.++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577899999999999988763
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=33.40 E-value=13 Score=22.55 Aligned_cols=22 Identities=5% Similarity=0.351 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 032067 17 QASASEIRDAYRKLALKWHPDR 38 (148)
Q Consensus 17 ~a~~~eIk~ayr~l~~~~HPDk 38 (148)
+-++++|+..|++|++.+|-.|
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 5688899999999998887654
No 77
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.54 E-value=1.1e+02 Score=18.47 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccch-HHHHHHHh
Q 032067 18 ASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDA-AKRTVYDA 74 (148)
Q Consensus 18 a~~~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~-~~R~~YD~ 74 (148)
.-...++.+|+.+.+...|....... =+.+..+|.... +|..|.++ .++.+|+.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~--We~vr~~~e~~~-~fkav~~E~eR~~lFee 60 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAV--WEDIRERFVKEP-AFEDITLESERKRIFKD 60 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCC--HHHHHHHHTTSH-HHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHccCH-HHHhcCCHHHHHHHHHH
Confidence 34567899999999999887643222 235556666555 78888765 44445553
No 78
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=25.69 E-value=43 Score=21.27 Aligned_cols=20 Identities=45% Similarity=0.601 Sum_probs=16.4
Q ss_pred ccCcCCCCCHHHHHHHHHHH
Q 032067 11 VLGLHKQASASEIRDAYRKL 30 (148)
Q Consensus 11 iLgv~~~a~~~eIk~ayr~l 30 (148)
++-|++.|+..|||+|-.++
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46788899999999988765
No 79
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=25.39 E-value=43 Score=21.35 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.0
Q ss_pred ccCcCCCCCHHHHHHHHHHHH
Q 032067 11 VLGLHKQASASEIRDAYRKLA 31 (148)
Q Consensus 11 iLgv~~~a~~~eIk~ayr~l~ 31 (148)
++-|++.|+..|||+|-.++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 678999999999999988763
No 80
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.33 E-value=47 Score=20.80 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=16.8
Q ss_pred ccCcCCCCCHHHHHHHHHHHH
Q 032067 11 VLGLHKQASASEIRDAYRKLA 31 (148)
Q Consensus 11 iLgv~~~a~~~eIk~ayr~l~ 31 (148)
++-|++.|+..|||+|-.++-
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf 47 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIF 47 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHHHHHc
Confidence 467888899999999887763
No 81
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=23.83 E-value=1e+02 Score=17.24 Aligned_cols=27 Identities=4% Similarity=0.146 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHccchHHHHHHHhhccc
Q 032067 52 RFQQIQEAYSVLSDAAKRTVYDAGLLS 78 (148)
Q Consensus 52 ~f~~i~~Ay~~Lsd~~~R~~YD~~~~~ 78 (148)
+....+-|-+.++||..|+.|+..+..
T Consensus 4 Kltl~~l~kdCi~np~~r~~Fe~ki~~ 30 (49)
T 3bbz_A 4 KVMITKMITDSVANPQMKQAFEQRLAK 30 (49)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445567788999999999999986544
No 82
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=23.72 E-value=85 Score=21.43 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=24.9
Q ss_pred ccccCcCCCCC--HHHHHHHHHHHHHHhCCCCC
Q 032067 9 YSVLGLHKQAS--ASEIRDAYRKLALKWHPDRW 39 (148)
Q Consensus 9 Y~iLgv~~~a~--~~eIk~ayr~l~~~~HPDk~ 39 (148)
|.-||.+...+ -..|-.|+..=++..|||.+
T Consensus 94 ~~WLG~Pd~~sidg~t~l~a~lt~sl~nhP~~f 126 (136)
T 1xs0_A 94 LTWLNVNDALSIDGKTVLFAALTGSLENHPDGF 126 (136)
T ss_dssp EEEECSSCCCCHHHHHHHHHHHHTHHHHSTTSC
T ss_pred eEecCCCChhhcccHHHHHHHHhcchhcCcccc
Confidence 66788876554 44689999999999999976
No 83
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=23.40 E-value=71 Score=19.06 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHH
Q 032067 24 RDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYD 73 (148)
Q Consensus 24 k~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD 73 (148)
.+..|..++.-||+..... .+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~~~~-------~eisk~lg~~Wk~ls~~eK~~y~~ 61 (83)
T 1aab_A 19 VQTSREEHKKKHPDASVNF-------SEFSKKCSERWKTMSAKEKGKFED 61 (83)
T ss_dssp HHHHHHHHTTSCTTTCCCS-------SSSHHHHHHHHTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcH-------HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4456666677788753111 245678899999998766554444
No 84
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=23.39 E-value=50 Score=20.94 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.1
Q ss_pred ccCcCCCCCHHHHHHHHHHH
Q 032067 11 VLGLHKQASASEIRDAYRKL 30 (148)
Q Consensus 11 iLgv~~~a~~~eIk~ayr~l 30 (148)
++-|++.|+..|||+|-.++
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999988776
No 85
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=23.13 E-value=1.1e+02 Score=20.32 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHhh
Q 032067 25 DAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDAG 75 (148)
Q Consensus 25 ~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~ 75 (148)
+.|+.++..+..... .+.........+.+.-.+|+.++..+++.+.+.-
T Consensus 64 k~W~~Va~~lg~p~~--~~sa~~~Lr~~Y~k~L~~YE~~~~~e~~~l~~~v 112 (121)
T 2rq5_A 64 KKWNKLADMLRIPKT--AQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEV 112 (121)
T ss_dssp TCHHHHHHHTCCCTT--CSSHHHHHHHHHHTTHHHHHHCCHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCC--cCcHHHHHHHHHHHHhHHHHCcCHHHHhhHHHHH
Confidence 578888888875442 2223335666777788888888888888887753
No 86
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=22.59 E-value=72 Score=17.92 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=17.5
Q ss_pred ccCcCCCCCHHHHHHHHHHHH
Q 032067 11 VLGLHKQASASEIRDAYRKLA 31 (148)
Q Consensus 11 iLgv~~~a~~~eIk~ayr~l~ 31 (148)
|=+|+++++.++|++.|.+..
T Consensus 4 v~nLp~~~t~~~l~~~F~~~G 24 (75)
T 1iqt_A 4 VGGLSPDTPEEKIREYFGGFG 24 (75)
T ss_dssp ESCCCSSCCHHHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHHhcC
Confidence 347899999999999998763
No 87
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=22.06 E-value=80 Score=19.43 Aligned_cols=26 Identities=27% Similarity=0.629 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHccchHHHHHHHhhc
Q 032067 48 EANRRFQQIQEAYSVLSDAAKRTVYDAGL 76 (148)
Q Consensus 48 ~a~~~f~~i~~Ay~~Lsd~~~R~~YD~~~ 76 (148)
.|.+.+..+-+.|. .-+.|.+||..+
T Consensus 50 qaae~ln~liegyt---~geerklydsal 75 (95)
T 1xou_B 50 QAAEKLNKLIEGYT---YGEERKLYDSAL 75 (95)
T ss_dssp HHHHHHHHHHHHHH---HSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc---chhHHHHHHHHH
Confidence 45566666666664 567888898743
No 88
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.72 E-value=1.3e+02 Score=17.44 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHH---HHHHHHccc-hH-HHHHHHhh
Q 032067 21 SEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQI---QEAYSVLSD-AA-KRTVYDAG 75 (148)
Q Consensus 21 ~eIk~ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i---~~Ay~~Lsd-~~-~R~~YD~~ 75 (148)
+|..+||.+|.+...-|.. - .-++.++.| ..-|.+|.| |. ++++|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~---w----sweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST---W----SFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS---C----CHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC---C----cHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 5778999999999876642 1 122344444 467999996 66 55677754
No 89
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=20.89 E-value=95 Score=19.04 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHHHHccchHHHHHHHh
Q 032067 26 AYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVYDA 74 (148)
Q Consensus 26 ayr~l~~~~HPDk~~~~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~YD~ 74 (148)
||--.+...++.....+|.. ...+..+.|.+.|..|++.++....+.
T Consensus 27 af~lF~~~~r~~~~~~~P~~--~~~eisk~lg~~Wk~ls~eeK~~y~~~ 73 (93)
T 1cg7_A 27 AYMFFANENRDIVRSENPDI--TFGQVGKKLGEKWKALTPEEKQPYEAK 73 (93)
T ss_dssp HHHHHHHHHTSTTTTTCTTS--CHHHHTTTHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555555555543334332 356788899999999986655554443
Done!