BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032068
         (148 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
          Nmr, Minimized Structure
          Length = 113

 Score = 32.0 bits (71), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 20 PSSNIDL-HFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAP-----VACSQCSETMERE 73
          P++N +   FA      E+C  CGD V   YA E  +    P       C++C +++E  
Sbjct: 20 PTTNPNTSKFAQKFGGAEKCSACGDSV---YAAEKVIGAGKPWHKNCFRCAKCGKSLEST 76

Query: 74 ILAIHKGE 81
           L   +GE
Sbjct: 77 TLTEKEGE 84


>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
 pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
          Length = 170

 Score = 29.3 bits (64), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 59  APVACSQCSETMEREILAIHKGENCPQRIVTCDFC 93
           A + C QC    ++  + IH  ++CP+R V+CD C
Sbjct: 109 ALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNC 143


>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
           Anosmin-1
          Length = 680

 Score = 28.1 bits (61), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 30  HCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETME--REILAIHKGENCP 84
            CS+ LE CK  GD+  RK+  + F     P    +C  + E  + IL + +G+ CP
Sbjct: 59  QCSKCLEPCKESGDL--RKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGD-CP 112


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 21/80 (26%)

Query: 5  SDETTKICSHCDRAIPSSNI-DLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVAC 63
          + E    CSHCD+      + D+HF                  ++Y + +F+   A   C
Sbjct: 11 TGEKPYACSHCDKTFRQKQLLDMHF------------------KRYHDPNFVP--AAFVC 50

Query: 64 SQCSETMEREILAIHKGENC 83
          S+C +T  R        +NC
Sbjct: 51 SKCGKTFTRRNTMARHADNC 70


>pdb|2YUC|A Chain A, Solution Structure Of The Traf-Type Zinc Finger Domains
          (102-164) From Human Tnf Receptor Associated Factor 4
          Length = 76

 Score = 26.9 bits (58), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 64 SQCSETMEREILAIHKGENCPQRIVTCDFC 93
          ++C   + R  L  H   +CP+R + C+FC
Sbjct: 21 NRCPMKLSRRDLPAHLQHDCPKRRLKCEFC 50


>pdb|2D9K|A Chain A, Solution Structure Of The Zf-Traf Domain Of Fln29 Gene
           Product
          Length = 75

 Score = 26.6 bits (57), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 78  HKGENCPQRIVTCDFCEFPLPAVDLAEHQ 106
           H+   CP R+  C  C+  L  + L EH+
Sbjct: 8   HEETECPLRLAVCQHCDLELSILKLKEHE 36


>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
           Dead-Box Rna Helicase Ddx5 (P68)
          Length = 253

 Score = 26.6 bits (57), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 51  EEHFLNTHAPVA--CSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 106
           E++F   H  +A   +Q  ET  R      +G NCP+ ++      FP   +D+   Q
Sbjct: 4   EKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQ 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.134    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,457,317
Number of Sequences: 62578
Number of extensions: 171008
Number of successful extensions: 331
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 14
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)