BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032073
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 11 ESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSE 70
++ + LR+F RK + AV V LPGG GTLDE+ E+L L+Q E++
Sbjct: 112 QTHALSLRYFFVRKVLFVRYAV--------GFVFLPGGFGTLDELSEVLVLLQTEKV-HR 162
Query: 71 LPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 122
PV L Y ++ L+ +L D V +++ L+++ D E + L
Sbjct: 163 FPVFLLDRGY---WEGLVRWLAFLRDQKAVGPEDL-QLFRLTDEPEEVVQAL 210
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
A +ALPGG GTL+E+ E++ QL P ++N D +Y LL F+ + G +
Sbjct: 112 AFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFI 167
Query: 101 A 101
+
Sbjct: 168 S 168
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
pdb|3QUA|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
Length = 199
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 41 AVVALPGGVGTLDEMFE 57
A +ALPGG+GTL+E FE
Sbjct: 120 AFIALPGGIGTLEEFFE 136
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|1YDH|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|2Q4D|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
pdb|2Q4D|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
Length = 216
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 12/50 (24%)
Query: 43 VALPGGVGTLDEMFEILALIQL----ERIGSELPVPFLVMNYDSFYKKLL 88
+ALPGG GT +E+ E + QL + +G ++N D +Y LL
Sbjct: 110 IALPGGYGTXEELLEXITWSQLGIHKKTVG--------LLNVDGYYNNLL 151
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|C Chain C, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|D Chain D, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|E Chain E, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|F Chain F, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|G Chain G, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|H Chain H, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
Length = 189
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 14/61 (22%)
Query: 4 PKVLCKQE------SQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 57
PK+L +E +LV RK + D A A + LPGGVGTLDE+ +
Sbjct: 76 PKMLVHRELADHDADELVVTETMWERKQVMEDRA--------NAFITLPGGVGTLDELLD 127
Query: 58 I 58
+
Sbjct: 128 V 128
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|B Chain B, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|C Chain C, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|D Chain D, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|E Chain E, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|F Chain F, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|G Chain G, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|H Chain H, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
Length = 191
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1 MLSPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 60
+ S +V+ + ++L+++ RK A ++ D ++ PGG GT +E+FE+L
Sbjct: 68 LFSGEVVHQNLTELIEVNGXHERK------AKXSELAD--GFISXPGGFGTYEELFEVLC 119
Query: 61 LIQL 64
Q+
Sbjct: 120 WAQI 123
>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
pdb|2I7N|B Chain B, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
Length = 360
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 6 VLCKQESQLVDLRFFSARKHGLIDCAV-RNDSCDRTAVVALPGGVGTLDEMFEILALIQL 64
+C ++ L +RF S H I +N S T + A GG +E F ++A +QL
Sbjct: 66 TMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQL 125
Query: 65 ERI 67
++
Sbjct: 126 HKL 128
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
pdb|3SMP|B Chain B, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
Length = 386
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 6 VLCKQESQLVDLRFFSARKHGLIDCAV-RNDSCDRTAVVALPGGVGTLDEMFEILALIQL 64
+C ++ L +RF S H I +N S T + A GG +E F ++A +QL
Sbjct: 88 TMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQL 147
Query: 65 ERI 67
++
Sbjct: 148 HKL 150
>pdb|3QFW|A Chain A, Crystal Structure Of Rubisco-Like Protein From
Rhodopseudomonas Palustris
pdb|3QFW|B Chain B, Crystal Structure Of Rubisco-Like Protein From
Rhodopseudomonas Palustris
Length = 378
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 7 LCKQESQLVDLRFFS-ARKHGLIDCAVRNDSCDRTA-VVALPGGVGTLDEMFEILALIQL 64
L K + L D F A + + AVR + R + P GTLD+M L +I+
Sbjct: 162 LIKDDHGLADQAFSPFAERAAAVGKAVREANAARGGRTLYAPNISGTLDDMRRQLGVIRD 221
Query: 65 ERIGSELPVPFL--VMNYDSFYKK 86
E IG+ L P + V N+ + K+
Sbjct: 222 EGIGAVLVAPMIVGVSNFHAIVKE 245
>pdb|3BQ9|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
pdb|3BQ9|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
Length = 460
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 14/110 (12%)
Query: 12 SQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA-LIQLERIGSE 70
++LV L R + CA +V PGG GT +E+ +L L+ +
Sbjct: 227 NELVILPDIEKRLEAFVRCA--------HGIVIFPGGAGTAEELLYLLGILMHPDNQRQS 278
Query: 71 LPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 120
LPV Y + LD E G DE L+KI + A++
Sbjct: 279 LPVILTGPASSRDYFEALD-----EFIGATIGDEARQLYKIIIDDPAAVA 323
>pdb|1P9B|A Chain A, Structure Of Fully Ligated Adenylosuccinate Synthetase
From Plasmodium Falciparum
Length = 442
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%)
Query: 12 SQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSEL 71
+L+D + S + H L D DS T + +GT + RIG L
Sbjct: 101 GKLLDRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQIGTTKRGIGPCYSTKASRIGIRL 160
Query: 72 PVPFLVMNYDSFYKKLLDFLGD 93
N+ + Y KL+D L D
Sbjct: 161 GTLKNFENFKNMYSKLIDHLMD 182
>pdb|3BV6|A Chain A, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|B Chain B, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|C Chain C, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|D Chain D, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|E Chain E, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|F Chain F, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
Length = 379
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 35 DSCDRTAVVALPGGVGTLDE 54
DS DRTA+V LP GV + D+
Sbjct: 205 DSFDRTALVTLPKGVSSYDK 224
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 43 VALPGGVGTLDEMFEILALIQLER-IGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA 101
+ALPGGVGTL E+ L+ L R +G L V D ++ LG + G +A
Sbjct: 102 LALPGGVGTLAELVLAWNLLYLRRGVGRPLAV-------DPYW------LGLLKAHGEIA 148
Query: 102 KDEVASLWKICD 113
++V L + D
Sbjct: 149 PEDVGLLRVVAD 160
>pdb|3PB4|X Chain X, Crystal Structure Of The Catalytic Domain Of Human
Golgi-Resident Glutaminyl Cyclase At Ph 6.0
pdb|3PB6|X Chain X, Crystal Structure Of The Catalytic Domain Of Human
Golgi-Resident Glutaminyl Cyclase At Ph 6.5
pdb|3PB7|X Chain X, Crystal Structure Of The Catalytic Domain Of Human
Golgi-Resident Glutaminyl Cyclase In Complex With Pbd150
pdb|3PB8|X Chain X, Crystal Structure Of The Catalytic Domain Of Human
Golgi-Resident Glutaminyl Cyclase In Complex With
N-Acetylhistamine
pdb|3PB9|X Chain X, Crystal Structure Of The Catalytic Domain Of Human
Golgi-Resident Glutaminyl Cyclase In Complex With
1-Benzylimidazole
Length = 330
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 125 FYDLSSIDKRVHEVNLKSTH 144
F+ L SI+KR+H +NL +H
Sbjct: 237 FHRLRSIEKRLHRLNLLQSH 256
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 24 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 67
+HGL+D A+ ND+ V++ P E+ AL Q +R+
Sbjct: 146 EHGLVDTAIANDNTPSQLVISGPA-----HEIARAEALFQHDRV 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,113,806
Number of Sequences: 62578
Number of extensions: 148884
Number of successful extensions: 380
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 16
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)