Query 032073
Match_columns 148
No_of_seqs 124 out of 1042
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03641 Lysine_decarbox: Poss 100.0 6.6E-34 1.4E-38 213.9 12.3 105 3-122 29-133 (133)
2 TIGR00730 conserved hypothetic 100.0 2.5E-33 5.4E-38 221.0 11.9 106 4-125 73-178 (178)
3 COG1611 Predicted Rossmann fol 99.9 6.5E-26 1.4E-30 182.5 10.6 111 4-128 87-198 (205)
4 TIGR00725 conserved hypothetic 99.9 2.1E-21 4.5E-26 150.5 9.7 92 3-122 67-158 (159)
5 PF13528 Glyco_trans_1_3: Glyc 85.3 7.7 0.00017 31.5 8.7 85 12-124 231-316 (318)
6 PF05014 Nuc_deoxyrib_tr: Nucl 78.8 6.7 0.00015 27.8 5.4 34 38-81 61-98 (113)
7 PF01182 Glucosamine_iso: Gluc 73.9 17 0.00038 28.5 7.0 83 39-126 21-111 (199)
8 KOG1584 Sulfotransferase [Gene 70.2 5 0.00011 34.6 3.3 65 47-132 152-219 (297)
9 TIGR00732 dprA DNA protecting 66.7 33 0.00072 27.8 7.3 75 18-121 143-219 (220)
10 COG0707 MurG UDP-N-acetylgluco 65.4 69 0.0015 27.9 9.5 83 15-127 237-323 (357)
11 PF04101 Glyco_tran_28_C: Glyc 65.1 10 0.00022 28.2 3.8 59 19-99 61-120 (167)
12 CHL00200 trpA tryptophan synth 64.3 32 0.0007 28.7 6.9 46 45-99 70-120 (263)
13 PF06258 Mito_fiss_Elm1: Mitoc 62.2 30 0.00065 29.5 6.5 74 39-126 229-309 (311)
14 PF01965 DJ-1_PfpI: DJ-1/PfpI 61.7 13 0.00029 27.4 3.8 37 41-80 39-79 (147)
15 PRK11780 isoprenoid biosynthes 61.4 13 0.00029 30.0 4.1 14 42-55 88-101 (217)
16 PF03492 Methyltransf_7: SAM d 58.5 15 0.00032 31.7 4.0 44 82-125 198-243 (334)
17 cd03147 GATase1_Ydr533c_like T 56.3 8.7 0.00019 31.3 2.2 34 41-80 96-135 (231)
18 PRK04155 chaperone protein Hch 54.9 14 0.0003 31.4 3.2 33 41-79 149-187 (287)
19 cd03133 GATase1_ES1 Type 1 glu 53.1 24 0.00052 28.6 4.2 14 42-55 85-98 (213)
20 cd03148 GATase1_EcHsp31_like T 52.6 11 0.00024 30.8 2.2 33 41-79 98-136 (232)
21 KOG3349 Predicted glycosyltran 51.1 32 0.0007 27.4 4.5 49 37-99 79-128 (170)
22 PRK02645 ppnK inorganic polyph 50.8 25 0.00055 29.8 4.2 52 39-100 58-118 (305)
23 cd04180 UGPase_euk_like Eukary 50.3 54 0.0012 27.2 6.0 68 41-126 2-76 (266)
24 PLN02591 tryptophan synthase 50.1 81 0.0018 26.2 7.0 41 51-99 62-107 (250)
25 PRK11253 ldcA L,D-carboxypepti 49.1 33 0.00071 29.2 4.6 71 21-100 51-122 (305)
26 PF14947 HTH_45: Winged helix- 48.9 22 0.00048 23.9 3.0 42 83-126 32-73 (77)
27 KOG4175 Tryptophan synthase al 48.7 67 0.0015 26.9 6.2 33 51-90 78-110 (268)
28 PRK13608 diacylglycerol glucos 47.8 58 0.0013 27.8 6.0 29 38-80 273-301 (391)
29 KOG1718 Dual specificity phosp 47.6 22 0.00049 28.8 3.2 33 55-95 124-156 (198)
30 TIGR00502 nagB glucosamine-6-p 45.6 1E+02 0.0022 25.1 6.9 80 40-124 34-123 (259)
31 PF00290 Trp_syntA: Tryptophan 45.3 53 0.0012 27.5 5.2 44 47-98 67-115 (259)
32 PHA03359 UL17 tegument protein 44.7 11 0.00024 36.0 1.1 17 40-56 649-665 (686)
33 PF11071 DUF2872: Protein of u 44.5 1.1E+02 0.0024 23.7 6.4 88 4-123 49-137 (141)
34 KOG3614 Ca2+/Mg2+-permeable ca 42.3 34 0.00073 35.2 4.1 56 41-104 271-327 (1381)
35 PRK10606 btuE putative glutath 41.6 1.1E+02 0.0024 24.0 6.3 33 113-145 74-106 (183)
36 PF04559 Herpes_UL17: Herpesvi 41.4 13 0.00027 34.3 1.0 12 39-50 522-533 (540)
37 PRK09461 ansA cytoplasmic aspa 41.3 39 0.00084 29.1 3.9 52 37-94 80-136 (335)
38 COG0159 TrpA Tryptophan syntha 40.6 1.3E+02 0.0029 25.4 7.0 67 45-123 72-140 (265)
39 PF00255 GSHPx: Glutathione pe 40.4 87 0.0019 22.8 5.2 73 72-146 21-103 (108)
40 cd00411 Asparaginase Asparagin 39.9 30 0.00065 29.6 3.0 49 38-93 78-131 (323)
41 PF04230 PS_pyruv_trans: Polys 39.8 62 0.0013 24.5 4.5 39 39-80 64-107 (286)
42 PRK10439 enterobactin/ferric e 39.4 1.4E+02 0.003 26.4 7.2 46 38-102 193-241 (411)
43 TIGR01133 murG undecaprenyldip 38.8 1.4E+02 0.003 24.2 6.7 14 114-127 307-320 (348)
44 PLN02668 indole-3-acetate carb 38.4 47 0.001 29.6 4.1 42 83-124 254-298 (386)
45 PRK00025 lpxB lipid-A-disaccha 38.3 89 0.0019 25.9 5.6 15 39-55 262-276 (380)
46 PRK13111 trpA tryptophan synth 38.2 70 0.0015 26.6 4.9 46 46-99 68-118 (258)
47 TIGR00421 ubiX_pad polyprenyl 38.2 1.6E+02 0.0034 23.1 6.7 80 38-124 75-165 (181)
48 COG0363 NagB 6-phosphogluconol 38.0 40 0.00087 27.8 3.4 43 40-86 33-75 (238)
49 PRK00696 sucC succinyl-CoA syn 37.7 2.3E+02 0.0049 24.5 8.2 71 39-124 311-383 (388)
50 PF11834 DUF3354: Domain of un 37.0 39 0.00084 22.9 2.6 32 40-81 19-50 (69)
51 cd07025 Peptidase_S66 LD-Carbo 37.0 58 0.0013 27.1 4.3 67 21-101 48-115 (282)
52 TIGR02153 gatD_arch glutamyl-t 36.8 47 0.001 29.6 3.9 49 39-93 140-193 (404)
53 PRK13609 diacylglycerol glucos 36.6 2.5E+02 0.0054 23.4 8.5 63 39-126 274-336 (380)
54 cd01400 6PGL 6PGL: 6-Phosphogl 36.2 1.9E+02 0.0042 22.9 7.0 40 39-84 23-62 (219)
55 PF00483 NTP_transferase: Nucl 35.7 56 0.0012 25.4 3.8 64 43-126 3-69 (248)
56 TIGR00519 asnASE_I L-asparagin 35.6 45 0.00098 28.7 3.5 49 38-93 77-130 (336)
57 TIGR00262 trpA tryptophan synt 35.6 1.8E+02 0.004 23.9 7.0 46 46-99 66-116 (256)
58 PF00710 Asparaginase: Asparag 35.4 66 0.0014 27.2 4.4 38 36-79 70-107 (313)
59 COG1208 GCD1 Nucleoside-diphos 35.2 88 0.0019 27.0 5.2 62 42-124 4-67 (358)
60 PRK07313 phosphopantothenoylcy 35.1 1.2E+02 0.0025 23.9 5.5 82 38-127 77-179 (182)
61 TIGR01198 pgl 6-phosphoglucono 35.1 1.8E+02 0.0039 23.4 6.8 38 40-84 29-66 (233)
62 TIGR00661 MJ1255 conserved hyp 34.9 2.1E+02 0.0045 23.6 7.3 46 39-99 248-293 (321)
63 PRK11096 ansB L-asparaginase I 34.9 68 0.0015 27.9 4.5 50 37-93 99-153 (347)
64 PF09369 DUF1998: Domain of un 34.8 22 0.00047 24.1 1.1 14 45-58 44-57 (84)
65 smart00870 Asparaginase Aspara 34.4 65 0.0014 27.5 4.2 50 38-93 77-131 (323)
66 TIGR01426 MGT glycosyltransfer 34.1 1.5E+02 0.0032 25.0 6.4 66 39-126 292-357 (392)
67 COG2382 Fes Enterochelin ester 33.8 60 0.0013 28.1 3.9 48 37-102 80-130 (299)
68 PF09345 DUF1987: Domain of un 33.4 44 0.00096 24.1 2.6 17 81-97 24-40 (99)
69 smart00046 DAGKc Diacylglycero 33.4 47 0.001 24.0 2.8 34 42-79 52-85 (124)
70 TIGR03646 YtoQ_fam YtoQ family 32.2 1.7E+02 0.0037 22.8 5.7 88 4-123 52-140 (144)
71 cd03130 GATase1_CobB Type 1 gl 31.8 64 0.0014 25.3 3.5 19 38-57 40-60 (198)
72 cd06259 YdcF-like YdcF-like. Y 31.6 1.9E+02 0.0041 20.9 5.9 11 40-50 1-11 (150)
73 PRK04183 glutamyl-tRNA(Gln) am 31.5 57 0.0012 29.3 3.5 49 39-94 153-206 (419)
74 PRK00726 murG undecaprenyldiph 31.5 2.9E+02 0.0063 22.6 9.0 67 39-127 253-323 (357)
75 cd01653 GATase1 Type 1 glutami 31.4 91 0.002 19.5 3.7 36 40-79 48-86 (115)
76 PRK13526 glutamine amidotransf 31.4 23 0.0005 28.2 0.9 13 39-52 40-52 (179)
77 TIGR00520 asnASE_II L-asparagi 31.0 84 0.0018 27.4 4.4 36 38-80 105-140 (349)
78 PF01535 PPR: PPR repeat; Int 30.4 53 0.0012 16.8 2.1 19 81-99 13-31 (31)
79 cd04197 eIF-2B_epsilon_N The N 30.3 1.3E+02 0.0027 23.4 5.0 63 42-125 3-67 (217)
80 cd03785 GT1_MurG MurG is an N- 30.0 3E+02 0.0064 22.2 9.4 14 114-127 310-323 (350)
81 cd05142 Barstar Barstar is an 30.0 1.2E+02 0.0026 21.1 4.3 37 15-60 4-41 (87)
82 TIGR03590 PseG pseudaminic aci 29.6 76 0.0016 26.1 3.8 43 15-80 226-268 (279)
83 TIGR01016 sucCoAbeta succinyl- 29.6 3E+02 0.0065 23.7 7.6 70 39-123 311-382 (386)
84 TIGR03609 S_layer_CsaB polysac 29.5 89 0.0019 25.5 4.2 38 38-80 64-107 (298)
85 PRK10122 GalU regulator GalF; 29.2 1.2E+02 0.0027 25.3 5.0 62 42-123 6-68 (297)
86 cd04193 UDPGlcNAc_PPase UDPGlc 29.2 1.8E+02 0.0038 25.0 6.0 41 40-94 16-59 (323)
87 KOG1322 GDP-mannose pyrophosph 28.9 1E+02 0.0022 27.5 4.5 70 38-126 8-77 (371)
88 PF03454 MoeA_C: MoeA C-termin 28.7 6.7 0.00014 25.4 -2.2 15 38-52 47-61 (72)
89 COG0252 AnsB L-asparaginase/ar 28.5 99 0.0021 27.1 4.4 35 39-80 101-135 (351)
90 COG3660 Predicted nucleoside-d 28.4 1.4E+02 0.003 26.0 5.2 51 39-102 245-296 (329)
91 PRK10200 putative racemase; Pr 28.2 2.5E+02 0.0055 22.6 6.5 22 106-127 77-98 (230)
92 TIGR01105 galF UTP-glucose-1-p 28.2 1.2E+02 0.0027 25.4 4.9 62 42-123 6-68 (297)
93 cd03786 GT1_UDP-GlcNAc_2-Epime 27.8 1.9E+02 0.0042 23.5 5.9 41 72-127 296-336 (363)
94 cd02540 GT2_GlmU_N_bac N-termi 27.4 1.2E+02 0.0027 23.1 4.5 58 43-123 2-60 (229)
95 PF11994 DUF3489: Protein of u 27.4 29 0.00063 24.0 0.7 21 43-64 19-39 (72)
96 cd03784 GT1_Gtf_like This fami 27.2 2.2E+02 0.0047 23.8 6.2 66 39-126 305-370 (401)
97 cd03128 GAT_1 Type 1 glutamine 27.2 1.2E+02 0.0026 17.9 3.6 15 41-55 48-62 (92)
98 cd07062 Peptidase_S66_mccF_lik 26.8 2.1E+02 0.0045 24.1 6.0 67 21-101 52-119 (308)
99 cd06300 PBP1_ABC_sugar_binding 26.8 1.1E+02 0.0025 23.6 4.2 34 38-80 60-93 (272)
100 cd03135 GATase1_DJ-1 Type 1 gl 26.7 1.9E+02 0.0041 20.9 5.2 39 38-80 60-101 (163)
101 cd01744 GATase1_CPSase Small c 26.5 96 0.0021 23.7 3.6 15 40-55 41-55 (178)
102 KOG2683 Sirtuin 4 and related 26.3 1.8E+02 0.0039 24.9 5.4 38 37-81 245-282 (305)
103 COG1568 Predicted methyltransf 26.1 2E+02 0.0042 25.4 5.7 53 72-128 175-242 (354)
104 TIGR00035 asp_race aspartate r 26.1 2.8E+02 0.0061 22.0 6.4 77 45-127 6-98 (229)
105 PRK14046 malate--CoA ligase su 26.0 4.5E+02 0.0098 23.1 8.2 71 39-124 311-383 (392)
106 COG3148 Uncharacterized conser 25.5 1.1E+02 0.0024 25.5 4.0 46 39-93 103-148 (231)
107 cd06281 PBP1_LacI_like_5 Ligan 25.5 2.7E+02 0.0058 21.5 6.1 51 38-98 55-115 (269)
108 PRK03619 phosphoribosylformylg 25.3 98 0.0021 24.8 3.6 13 42-54 44-56 (219)
109 cd01750 GATase1_CobQ Type 1 gl 25.3 1.6E+02 0.0035 22.9 4.7 19 38-57 37-55 (194)
110 PLN02327 CTP synthase 24.3 68 0.0015 30.0 2.8 34 38-76 362-395 (557)
111 cd06320 PBP1_allose_binding Pe 23.8 1.3E+02 0.0029 23.3 4.0 33 39-80 58-90 (275)
112 TIGR03702 lip_kinase_YegS lipi 23.6 94 0.002 25.6 3.3 40 42-86 55-97 (293)
113 PF00627 UBA: UBA/TS-N domain; 23.6 30 0.00065 19.9 0.2 32 90-122 5-37 (37)
114 PRK13059 putative lipid kinase 23.2 94 0.002 25.7 3.2 31 42-79 59-89 (295)
115 PRK11574 oxidative-stress-resi 23.1 1.3E+02 0.0029 22.9 3.9 43 38-84 66-111 (196)
116 cd04724 Tryptophan_synthase_al 23.0 2.8E+02 0.006 22.5 5.9 41 51-99 60-105 (242)
117 TIGR00963 secA preprotein tran 22.6 1E+02 0.0022 29.9 3.6 83 14-125 330-424 (745)
118 PLN02339 NAD+ synthase (glutam 22.5 50 0.0011 31.4 1.6 32 114-145 627-658 (700)
119 COG0028 IlvB Thiamine pyrophos 22.5 3E+02 0.0065 25.4 6.6 70 55-131 442-523 (550)
120 KOG0968 DNA polymerase zeta, c 22.4 1.3E+02 0.0028 31.1 4.4 35 41-78 1139-1173(1488)
121 PLN02164 sulfotransferase 21.8 1.2E+02 0.0026 26.4 3.7 66 46-131 193-262 (346)
122 COG1609 PurR Transcriptional r 21.8 2.4E+02 0.0052 23.8 5.4 50 39-99 115-175 (333)
123 PF02016 Peptidase_S66: LD-car 21.3 60 0.0013 27.1 1.7 66 21-100 48-114 (284)
124 COG1570 XseA Exonuclease VII, 21.1 80 0.0017 28.8 2.5 81 33-126 188-274 (440)
125 KOG0347 RNA helicase [RNA proc 21.0 2.9E+02 0.0063 26.6 6.1 72 39-120 314-391 (731)
126 COG0386 BtuE Glutathione perox 20.9 2.9E+02 0.0063 21.9 5.3 72 72-145 25-106 (162)
127 TIGR03800 PLP_synth_Pdx2 pyrid 20.5 1.1E+02 0.0023 23.9 2.8 13 39-52 37-49 (184)
128 PF11946 DUF3463: Domain of un 20.4 71 0.0015 24.7 1.8 21 72-93 74-94 (138)
129 cd07020 Clp_protease_NfeD_1 No 20.2 2.4E+02 0.0051 21.8 4.8 33 39-79 30-65 (187)
130 PRK10014 DNA-binding transcrip 20.2 3.5E+02 0.0075 21.9 6.0 50 39-98 121-181 (342)
131 cd04882 ACT_Bt0572_2 C-termina 20.1 2.1E+02 0.0046 17.1 4.9 23 42-64 3-25 (65)
132 TIGR01383 not_thiJ DJ-1 family 20.0 2.9E+02 0.0062 20.4 5.1 39 38-80 63-104 (179)
No 1
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=6.6e-34 Score=213.88 Aligned_cols=105 Identities=38% Similarity=0.670 Sum_probs=96.0
Q ss_pred CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073 3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 82 (148)
Q Consensus 3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g 82 (148)
.||+++| +.+.+++|++||..|++.| ||||+||||+|||||+|++|+|.|+|.+ .++|++|+|.+|
T Consensus 29 ~~~~~~~---~~~~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTl~El~~~~~~~~l~~~---~~~Piil~~~~g 94 (133)
T PF03641_consen 29 PPNPYVT---ELIIVDDMFERKEIMIESS--------DAFIALPGGIGTLDELFEALTLMQLGRH---NKVPIILLNIDG 94 (133)
T ss_dssp TCCTTSS---EEEEESSHHHHHHHHHHHE--------SEEEEES-SHHHHHHHHHHHHHHHTTSS---TS-EEEEEECGG
T ss_pred cCCcccC---ceeEeCChHHHHHHHHHhC--------CEEEEEecCCchHHHHHHHHHHHhhccc---cCCCEEEeCCcc
Confidence 3689998 7799999999999999986 9999999999999999999999999987 355999999999
Q ss_pred chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHH
Q 032073 83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 122 (148)
Q Consensus 83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L 122 (148)
||+++++|+++|+++||+++++. +++.++||++|++++|
T Consensus 95 ~w~~l~~~l~~~~~~g~i~~~~~-~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 95 FWDPLLEFLDRMIEEGFISPDDL-DLLHFVDDPEEALEYI 133 (133)
T ss_dssp CCHHHHHHHHHHHHTTSSSHHHH-CCEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHC-CeEEEeCCHHHHHhhC
Confidence 99999999999999999999875 7999999999999975
No 2
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=2.5e-33 Score=220.97 Aligned_cols=106 Identities=24% Similarity=0.449 Sum_probs=99.4
Q ss_pred CccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccc
Q 032073 4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 83 (148)
Q Consensus 4 ~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gf 83 (148)
+|++++ ..+.+.+|++||..|++.| ||||+||||+|||||++|+|||.|+|.| +||++++|++||
T Consensus 73 ~~~~~~---~~i~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTL~El~e~~~~~qlg~~----~kPiil~n~~g~ 137 (178)
T TIGR00730 73 VHQNLT---ELIEVNGMHERKAMMAELA--------DAFIAMPGGFGTLEELFEVLTWAQLGIH----QKPIILFNVNGH 137 (178)
T ss_pred cCCCCC---ceEEECCHHHHHHHHHHhC--------CEEEEcCCCcchHHHHHHHHHHHHcCCC----CCCEEEECCcch
Confidence 689998 6799999999999999975 9999999999999999999999999976 789999999999
Q ss_pred hHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhh
Q 032073 84 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 125 (148)
Q Consensus 84 wd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~ 125 (148)
|++|++|+++|+++||+++++. +++.++||++|++++|++|
T Consensus 138 ~~~l~~~l~~~~~~gfi~~~~~-~~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 138 FDGLVEWLKYSIQEGFISESHL-KLIHVVSRPDELIEQVQNY 178 (178)
T ss_pred HHHHHHHHHHHHHCCCCCHHHc-CcEEEcCCHHHHHHHHHhC
Confidence 9999999999999999999774 8999999999999999763
No 3
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=6.5e-26 Score=182.51 Aligned_cols=111 Identities=31% Similarity=0.495 Sum_probs=100.6
Q ss_pred CccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccc
Q 032073 4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 83 (148)
Q Consensus 4 ~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gf 83 (148)
||++.+ +++++.+|+.||..|+++| ||||++|||+||+||+||+|||.|+|.+. ..+|++++|.++|
T Consensus 87 ~~~~~~---~l~~~~~~~~Rk~~~~~~a--------da~V~~pGG~GTleEl~e~lt~~q~g~~~--l~~~~~i~~~~~~ 153 (205)
T COG1611 87 PNYEVI---ELITGMDFAERKRAMVRSA--------DAFIVLPGGFGTLEELFEALTLGQTGVHA--LTPPPLILNGNGF 153 (205)
T ss_pred Cccccc---eeeecCCHHHHHHHHHHhC--------CEEEEeCCCcchHHHHHHHHHHhhCCccc--CCCCcEEecchHH
Confidence 555555 8899999999999999987 99999999999999999999999999874 3678888999999
Q ss_pred hHHHHHHHH-HHHHcCCCChhhcccceEEeCCHHHHHHHHHhhhcc
Q 032073 84 YKKLLDFLG-DCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 128 (148)
Q Consensus 84 wd~L~~~l~-~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~~~~ 128 (148)
|+++.+|++ +++.+|++++.+ .+.++++||++++++.+.++...
T Consensus 154 ~~~~~~~~d~~~i~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 154 WEPLLEFLDPHLIVEGLISEAD-RELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred HHHHHHHhCHHHHHhhcCChhh-hhheeeecCHHHHHHHHHHhccc
Confidence 999999999 899999999976 58899999999999999998764
No 4
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=99.86 E-value=2.1e-21 Score=150.48 Aligned_cols=92 Identities=20% Similarity=0.137 Sum_probs=75.2
Q ss_pred CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073 3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 82 (148)
Q Consensus 3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g 82 (148)
.+|++++ ..+....++.||..|++.+ ||||++|||+|||||++|+|+ + +||++++|.+|
T Consensus 67 ~~~~~~~---~~i~~~~~~~Rk~~m~~~s--------da~IvlpGG~GTL~E~~~a~~------~----~kpv~~l~~~g 125 (159)
T TIGR00725 67 AGNPYLT---IKVKTGMNFARNFILVRSA--------DVVVSVGGGYGTAIEILGAYA------L----GGPVVVLRGTG 125 (159)
T ss_pred cCCCCce---EEEECCCcchHHHHHHHHC--------CEEEEcCCchhHHHHHHHHHH------c----CCCEEEEECCC
Confidence 4677776 3455667788999999986 999999999999999999998 2 58999999999
Q ss_pred chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHH
Q 032073 83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 122 (148)
Q Consensus 83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L 122 (148)
||+++++++ +.+.+|+ + +.+.+++|++|+++++
T Consensus 126 ~~~~~l~~~--~~~~~~~-~----~~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 126 GWTDRLSQV--LIEGVYL-D----ERVIVEITPAEAVKLA 158 (159)
T ss_pred cchHHHHHH--Hhccccc-c----ceeEecCCHHHHHHhh
Confidence 999998865 4454443 3 2478999999999864
No 5
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=85.31 E-value=7.7 Score=31.48 Aligned_cols=85 Identities=20% Similarity=0.199 Sum_probs=51.4
Q ss_pred CceeeechHH-HhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHH
Q 032073 12 SQLVDLRFFS-ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF 90 (148)
Q Consensus 12 ~~~~~~~~f~-~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~ 90 (148)
...+++..|. .....++.. +|++|.. ||++|+-|... + .||++++-..++++....-
T Consensus 231 ~~ni~~~~~~~~~~~~~m~~--------ad~vIs~-~G~~t~~Ea~~------~-------g~P~l~ip~~~~~EQ~~~a 288 (318)
T PF13528_consen 231 PGNIHVRPFSTPDFAELMAA--------ADLVISK-GGYTTISEALA------L-------GKPALVIPRPGQDEQEYNA 288 (318)
T ss_pred CCCEEEeecChHHHHHHHHh--------CCEEEEC-CCHHHHHHHHH------c-------CCCEEEEeCCCCchHHHHH
Confidence 3456666664 555555554 4877776 78899776542 2 5799999876777766442
Q ss_pred HHHHHHcCCCChhhcccceEEeCCHHHHHHHHHh
Q 032073 91 LGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 124 (148)
Q Consensus 91 l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~ 124 (148)
+.+.+.|.... +-.-.-+++.+-++|++
T Consensus 289 -~~l~~~G~~~~-----~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 289 -RKLEELGLGIV-----LSQEDLTPERLAEFLER 316 (318)
T ss_pred -HHHHHCCCeEE-----cccccCCHHHHHHHHhc
Confidence 44666664321 00112267777777764
No 6
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=78.76 E-value=6.7 Score=27.84 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=26.9
Q ss_pred CccEEEEccCC----hhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCc
Q 032073 38 DRTAVVALPGG----VGTLDEMFEILALIQLERIGSELPVPFLVMNYD 81 (148)
Q Consensus 38 esdAfI~lPGG----~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~ 81 (148)
+||++|+.-.| .||.=|+--+..+ .|||+++..+
T Consensus 61 ~~D~via~l~~~~~d~Gt~~ElG~A~al----------gkpv~~~~~d 98 (113)
T PF05014_consen 61 ECDIVIANLDGFRPDSGTAFELGYAYAL----------GKPVILLTED 98 (113)
T ss_dssp HSSEEEEEECSSS--HHHHHHHHHHHHT----------TSEEEEEECC
T ss_pred HCCEEEEECCCCCCCCcHHHHHHHHHHC----------CCEEEEEEcC
Confidence 46999988777 9999998877632 5799999864
No 7
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=73.88 E-value=17 Score=28.55 Aligned_cols=83 Identities=23% Similarity=0.197 Sum_probs=47.0
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchH------HHHHHHHH-HHHcCCCChhhcccceE-
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK------KLLDFLGD-CEDWGTVAKDEVASLWK- 110 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd------~L~~~l~~-m~~~Gfi~~~~~~~li~- 110 (148)
..+.|+|+|| .|...+++.|.-..-..+ .-..+.+++.|.||- .-..++++ +.+..-|+++.. ..+.
T Consensus 21 ~~~~i~LsgG-stp~~~y~~L~~~~~~~i---~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i-~~~~~ 95 (199)
T PF01182_consen 21 GRAVIALSGG-STPKPLYQELAKLHKERI---DWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENI-HPIDG 95 (199)
T ss_dssp SSEEEEE--S-CTHHHHHHHHHHHHHTCS---CGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGE-ETSST
T ss_pred CCEEEEEcCC-HHHHHHHHHHhhhccccC---ChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceE-EeCCC
Confidence 4799999999 577788888876541111 236799999988882 22333433 333333444321 1111
Q ss_pred EeCCHHHHHHHHHhhh
Q 032073 111 ICDSNSEALSYLAEFY 126 (148)
Q Consensus 111 ~~d~~ee~l~~L~~~~ 126 (148)
-.+++++..+..++..
T Consensus 96 ~~~~~~~~~~~y~~~l 111 (199)
T PF01182_consen 96 EADDPEEAAERYEQEL 111 (199)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 1367778777776654
No 8
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=70.21 E-value=5 Score=34.57 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=42.4
Q ss_pred CChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHcC---CCChhhcccceEEeCCHHHHHHHHH
Q 032073 47 GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWG---TVAKDEVASLWKICDSNSEALSYLA 123 (148)
Q Consensus 47 GG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~G---fi~~~~~~~li~~~d~~ee~l~~L~ 123 (148)
.+.||+||+||..+-.++ .++ .||++++.|-+ +.+.. |+.-+++ -.||...++.|.
T Consensus 152 ~~~~~~e~~fe~F~~G~~------------~~G--p~~dHVl~~W~-~~~~~~VLFl~YEdm------k~dp~~~ikrla 210 (297)
T KOG1584|consen 152 PGPGTFEEFFESFCNGVV------------PYG--PWWDHVLGYWE-LEDPKNVLFLKYEDM------KADPKGEIKKLA 210 (297)
T ss_pred CCCCcHHHHHHHHhCCcC------------CcC--ChHHHHHHHHH-hcCCCceEEEEHHHh------hhCHHHHHHHHH
Confidence 356779999999965433 233 59999999987 22211 3333221 267888888898
Q ss_pred hhhccCCcc
Q 032073 124 EFYDLSSID 132 (148)
Q Consensus 124 ~~~~~~~~~ 132 (148)
.|...+..+
T Consensus 211 eFLg~~~~~ 219 (297)
T KOG1584|consen 211 EFLGCPFTK 219 (297)
T ss_pred HHhCCCCCH
Confidence 887665443
No 9
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=66.66 E-value=33 Score=27.79 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=51.5
Q ss_pred chHHHhHHHHHHhhhhcCCCCccEEEEccCC--hhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHH
Q 032073 18 RFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE 95 (148)
Q Consensus 18 ~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG--~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~ 95 (148)
.+|..|-..+..+| |+.|++=+| -||+.+.-..+.+ .|||..+-. ..+++.-+--..++
T Consensus 143 ~~f~~RNriia~ls--------~~vivve~~~~sGtl~ta~~A~~~----------gr~v~~~pg-~~~~~~~~G~~~Li 203 (220)
T TIGR00732 143 YNFPKRNRIISGLS--------RAVLVVEAPLKSGALITARYALEQ----------GREVFAYPG-DLNSPESDGCHKLI 203 (220)
T ss_pred ccHHHHHHHHHHhc--------CEEEEEECCCCCchHHHHHHHHHh----------CCcEEEEcC-CCCCccchHHHHHH
Confidence 46788999998886 999999887 5998766555522 579998853 35555555556677
Q ss_pred HcCCCChhhcccceEEeCCHHHHHHH
Q 032073 96 DWGTVAKDEVASLWKICDSNSEALSY 121 (148)
Q Consensus 96 ~~Gfi~~~~~~~li~~~d~~ee~l~~ 121 (148)
++|- ....+++++++.
T Consensus 204 ~~GA----------~~i~~~~d~~~~ 219 (220)
T TIGR00732 204 EQGA----------ALITSAKDILET 219 (220)
T ss_pred HCCC----------EEECCHHHHHHh
Confidence 7771 122567777653
No 10
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=65.42 E-value=69 Score=27.87 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=51.0
Q ss_pred eeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccch---HHHHHHH
Q 032073 15 VDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY---KKLLDFL 91 (148)
Q Consensus 15 ~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfw---d~L~~~l 91 (148)
+++..|+......+..| |.+|.=+|+ .|+.|+..+ .+|.|++-. .++ +...+ -
T Consensus 237 ~~v~~f~~dm~~~~~~A--------DLvIsRaGa-~Ti~E~~a~-------------g~P~IliP~-p~~~~~~Q~~N-A 292 (357)
T COG0707 237 VRVLPFIDDMAALLAAA--------DLVISRAGA-LTIAELLAL-------------GVPAILVPY-PPGADGHQEYN-A 292 (357)
T ss_pred EEEeeHHhhHHHHHHhc--------cEEEeCCcc-cHHHHHHHh-------------CCCEEEeCC-CCCccchHHHH-H
Confidence 66778888888777765 977776665 798887532 479999975 466 23222 2
Q ss_pred HHHHHcCCCChhhcccceEEeC-CHHHHHHHHHhhhc
Q 032073 92 GDCEDWGTVAKDEVASLWKICD-SNSEALSYLAEFYD 127 (148)
Q Consensus 92 ~~m~~~Gfi~~~~~~~li~~~d-~~ee~l~~L~~~~~ 127 (148)
+.+.+.|... .+.-.+ +++++.+.|.+...
T Consensus 293 ~~l~~~gaa~------~i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 293 KFLEKAGAAL------VIRQSELTPEKLAELILRLLS 323 (357)
T ss_pred HHHHhCCCEE------EeccccCCHHHHHHHHHHHhc
Confidence 3456666321 111112 46677777766543
No 11
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=65.06 E-value=10 Score=28.18 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=29.9
Q ss_pred hHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchH-HHHHHHHHHHHc
Q 032073 19 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK-KLLDFLGDCEDW 97 (148)
Q Consensus 19 ~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd-~L~~~l~~m~~~ 97 (148)
.|......+++.| | +|+--||.||+-|+.. ..+|.|++-..+-.+ .-..--+.+.+.
T Consensus 61 ~~~~~m~~~m~~a--------D-lvIs~aG~~Ti~E~l~-------------~g~P~I~ip~~~~~~~~q~~na~~~~~~ 118 (167)
T PF04101_consen 61 GFVDNMAELMAAA--------D-LVISHAGAGTIAEALA-------------LGKPAIVIPLPGAADNHQEENAKELAKK 118 (167)
T ss_dssp CSSSSHHHHHHHH--------S-EEEECS-CHHHHHHHH-------------CT--EEEE--TTT-T-CHHHHHHHHHHC
T ss_pred echhhHHHHHHHc--------C-EEEeCCCccHHHHHHH-------------cCCCeeccCCCCcchHHHHHHHHHHHHc
Confidence 3444466677665 8 6677778899877643 257988874322121 222222345666
Q ss_pred CC
Q 032073 98 GT 99 (148)
Q Consensus 98 Gf 99 (148)
|.
T Consensus 119 g~ 120 (167)
T PF04101_consen 119 GA 120 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 12
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=64.28 E-value=32 Score=28.74 Aligned_cols=46 Identities=22% Similarity=0.608 Sum_probs=31.5
Q ss_pred ccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHH-----HHHHHHHcCC
Q 032073 45 LPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-----FLGDCEDWGT 99 (148)
Q Consensus 45 lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~-----~l~~m~~~Gf 99 (148)
|=+|+ |++.+|+.+.-.. .. .+.|++++. ||+++.+ |++.+.+.|.
T Consensus 70 L~~g~-~~~~~~~~~~~~r-~~----~~~p~vlm~---Y~N~i~~~G~e~F~~~~~~aGv 120 (263)
T CHL00200 70 LKQGI-NLNKILSILSEVN-GE----IKAPIVIFT---YYNPVLHYGINKFIKKISQAGV 120 (263)
T ss_pred HHcCC-CHHHHHHHHHHHh-cC----CCCCEEEEe---cccHHHHhCHHHHHHHHHHcCC
Confidence 44554 6788888776543 22 468998774 8886655 7888888883
No 13
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=62.17 E-value=30 Score=29.50 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=47.4
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHcCCCChhhccc--c-----eEE
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVAS--L-----WKI 111 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~Gfi~~~~~~~--l-----i~~ 111 (148)
+|++++-+- -+..+..-... .+||.++...+--..+..+++.|.+.|.++.=+ .. + +.-
T Consensus 229 ad~i~VT~D------SvSMvsEA~~t-------G~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~-~~~~~~~~~~~~p 294 (311)
T PF06258_consen 229 ADAIVVTED------SVSMVSEAAAT-------GKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFT-GWRDLEQWTPYEP 294 (311)
T ss_pred CCEEEEcCc------cHHHHHHHHHc-------CCCEEEecCCCcchHHHHHHHHHHHCCCEEECC-CcccccccccCCC
Confidence 499999555 44444444444 479999998775567788888899999776522 11 1 223
Q ss_pred eCCHHHHHHHHHhhh
Q 032073 112 CDSNSEALSYLAEFY 126 (148)
Q Consensus 112 ~d~~ee~l~~L~~~~ 126 (148)
.++.+.+.+.|.+.+
T Consensus 295 l~et~r~A~~i~~r~ 309 (311)
T PF06258_consen 295 LDETDRVAAEIRERL 309 (311)
T ss_pred ccHHHHHHHHHHHHh
Confidence 356666666665543
No 14
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=61.73 E-value=13 Score=27.37 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=21.7
Q ss_pred EEEEccCChhhHHHHH-H---HHHHHhhhhhcCCCCCcEEEEeC
Q 032073 41 AVVALPGGVGTLDEMF-E---ILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 41 AfI~lPGG~GTLeElf-E---vlt~~qlg~~~k~~~kPivlln~ 80 (148)
-.|++|||.|..+.+. . +..+.+--. . ..|||+-.-.
T Consensus 39 DalilpGG~~~~~~l~~~~~~l~~~~~~~~-~--~~k~iaaIC~ 79 (147)
T PF01965_consen 39 DALILPGGHGGADDLRTDSKDLLELLKEFY-E--AGKPIAAICH 79 (147)
T ss_dssp SEEEEE-BTHHHHHHTTCHHHHHHHHHHHH-H--TT-EEEEETT
T ss_pred CEEEECCCCchhhhHhhHHHHHHHHHHHHH-H--cCCeEEecCC
Confidence 3688999999777776 2 333333211 2 3789988764
No 15
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=61.40 E-value=13 Score=30.00 Aligned_cols=14 Identities=29% Similarity=0.809 Sum_probs=10.5
Q ss_pred EEEccCChhhHHHH
Q 032073 42 VVALPGGVGTLDEM 55 (148)
Q Consensus 42 fI~lPGG~GTLeEl 55 (148)
.|++|||.|.++-+
T Consensus 88 alviPGG~g~~~~l 101 (217)
T PRK11780 88 ALIVPGGFGAAKNL 101 (217)
T ss_pred EEEECCCCchhhhh
Confidence 56899999986433
No 16
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=58.50 E-value=15 Score=31.66 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=32.9
Q ss_pred cchHHHHHHHHHHHHcCCCChhhccc--ceEEeCCHHHHHHHHHhh
Q 032073 82 SFYKKLLDFLGDCEDWGTVAKDEVAS--LWKICDSNSEALSYLAEF 125 (148)
Q Consensus 82 gfwd~L~~~l~~m~~~Gfi~~~~~~~--li~~~d~~ee~l~~L~~~ 125 (148)
.+|+-|-+.++.|+.+|.|+++.++. +.....+++|+-+.++.-
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~ 243 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEE 243 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcC
Confidence 58999999999999999999987532 336789999999998764
No 17
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=56.31 E-value=8.7 Score=31.34 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=21.4
Q ss_pred EEEEccCChhhHHHHH------HHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 41 AVVALPGGVGTLDEMF------EILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 41 AfI~lPGG~GTLeElf------Evlt~~qlg~~~k~~~kPivlln~ 80 (148)
-.|++|||.|.+..+. +++.... ...|||+-+--
T Consensus 96 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~------~~gK~iaAICh 135 (231)
T cd03147 96 GIFFVAGGHGTLFDFPHATNLQKIAQQIY------ANGGVVAAVCH 135 (231)
T ss_pred cEEEECCCCchhhhcccCHHHHHHHHHHH------HcCCEEEEECh
Confidence 4678999999876544 3333221 13789887763
No 18
>PRK04155 chaperone protein HchA; Provisional
Probab=54.90 E-value=14 Score=31.36 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=22.1
Q ss_pred EEEEccCChhhHHHH------HHHHHHHhhhhhcCCCCCcEEEEe
Q 032073 41 AVVALPGGVGTLDEM------FEILALIQLERIGSELPVPFLVMN 79 (148)
Q Consensus 41 AfI~lPGG~GTLeEl------fEvlt~~qlg~~~k~~~kPivlln 79 (148)
..|++|||.|.+..| .+++.+..- ..|||+-+-
T Consensus 149 DaV~iPGG~g~~~dL~~~~~l~~ll~~~~~------~~K~VaAIC 187 (287)
T PRK04155 149 AAVFIPGGHGALIGLPESEDVAAALQWALD------NDRFIITLC 187 (287)
T ss_pred cEEEECCCCchHHHHhhCHHHHHHHHHHHH------cCCEEEEEC
Confidence 567899999987765 444544421 368887665
No 19
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=53.12 E-value=24 Score=28.61 Aligned_cols=14 Identities=29% Similarity=0.814 Sum_probs=10.3
Q ss_pred EEEccCChhhHHHH
Q 032073 42 VVALPGGVGTLDEM 55 (148)
Q Consensus 42 fI~lPGG~GTLeEl 55 (148)
.|++|||.|..+-+
T Consensus 85 alviPGG~~~~~~l 98 (213)
T cd03133 85 ALIFPGGFGAAKNL 98 (213)
T ss_pred EEEECCCCchhhhh
Confidence 56899999875433
No 20
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=52.59 E-value=11 Score=30.78 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=20.7
Q ss_pred EEEEccCChhhHHHH------HHHHHHHhhhhhcCCCCCcEEEEe
Q 032073 41 AVVALPGGVGTLDEM------FEILALIQLERIGSELPVPFLVMN 79 (148)
Q Consensus 41 AfI~lPGG~GTLeEl------fEvlt~~qlg~~~k~~~kPivlln 79 (148)
..|++|||.|++..| -+++.... . ..|||.-+-
T Consensus 98 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~--~----~gK~VaAIC 136 (232)
T cd03148 98 AAVFIPGGHGALIGIPESQDVAAALQWAI--K----NDRFVITLC 136 (232)
T ss_pred eEEEECCCCCChhhcccCHHHHHHHHHHH--H----cCCEEEEEC
Confidence 456899999998754 33333221 1 368887665
No 21
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=51.07 E-value=32 Score=27.38 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=26.3
Q ss_pred CCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchH-HHHHHHHHHHHcCC
Q 032073 37 CDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK-KLLDFLGDCEDWGT 99 (148)
Q Consensus 37 ~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd-~L~~~l~~m~~~Gf 99 (148)
+++| .|+==+|.||. +|++. ..||.+++-.+.--| +=.++-+++.++|+
T Consensus 79 ~~Ad-lVIsHAGaGS~---letL~----------l~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 79 RSAD-LVISHAGAGSC---LETLR----------LGKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred hhcc-EEEecCCcchH---HHHHH----------cCCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 3446 66677899994 44441 257877764333222 22333344566553
No 22
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.82 E-value=25 Score=29.82 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=35.0
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCc---cchHHH------HHHHHHHHHcCCC
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD---SFYKKL------LDFLGDCEDWGTV 100 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~---gfwd~L------~~~l~~m~~~Gfi 100 (148)
.|.+|++ ||=||+-+....+. . .++|++-+|.. ||.... .+.++.+.+..+.
T Consensus 58 ~d~vi~~-GGDGT~l~~~~~~~-----~----~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~~g~~~ 118 (305)
T PRK02645 58 IDLAIVL-GGDGTVLAAARHLA-----P----HDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQEDRYA 118 (305)
T ss_pred cCEEEEE-CCcHHHHHHHHHhc-----c----CCCCEEEEecCCcceEecCchhhcchHHHHHHHHcCCce
Confidence 4666666 99999988776652 1 26899999962 566643 4566666665553
No 23
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=50.31 E-value=54 Score=27.21 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=37.9
Q ss_pred EEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEe---CccchHHHHHHHHHHHH---cCCCChhhcccc-eEEeC
Q 032073 41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN---YDSFYKKLLDFLGDCED---WGTVAKDEVASL-WKICD 113 (148)
Q Consensus 41 AfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln---~~gfwd~L~~~l~~m~~---~Gfi~~~~~~~l-i~~~d 113 (148)
|+|+|-||.||= +|. ..+||.+=++ ..-+.+-..+.+..+.. ++. ....+ ....+
T Consensus 2 a~viLaGG~GtR-----------Lg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~----~Ip~~imts~~ 63 (266)
T cd04180 2 AVVLLAGGLGTR-----------LGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSC----KIPEQLMNSKY 63 (266)
T ss_pred EEEEECCCCccc-----------cCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCC----CCCEEEEcCch
Confidence 689999999992 333 2467766444 34466666666655322 121 11112 22234
Q ss_pred CHHHHHHHHHhhh
Q 032073 114 SNSEALSYLAEFY 126 (148)
Q Consensus 114 ~~ee~l~~L~~~~ 126 (148)
+.+++.+++++.-
T Consensus 64 t~~~t~~~l~~~~ 76 (266)
T cd04180 64 THEKTQCYFEKIN 76 (266)
T ss_pred hHHHHHHHHHHcC
Confidence 5667778777643
No 24
>PLN02591 tryptophan synthase
Probab=50.07 E-value=81 Score=26.20 Aligned_cols=41 Identities=22% Similarity=0.557 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHH-----HHHHHHHHHcCC
Q 032073 51 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKL-----LDFLGDCEDWGT 99 (148)
Q Consensus 51 TLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L-----~~~l~~m~~~Gf 99 (148)
|++.+|+.+.-.. . ..+.|++++. ||+++ .+|++.+.+.|.
T Consensus 62 ~~~~~~~~~~~~r--~---~~~~p~ilm~---Y~N~i~~~G~~~F~~~~~~aGv 107 (250)
T PLN02591 62 TLDSVISMLKEVA--P---QLSCPIVLFT---YYNPILKRGIDKFMATIKEAGV 107 (250)
T ss_pred CHHHHHHHHHHHh--c---CCCCCEEEEe---cccHHHHhHHHHHHHHHHHcCC
Confidence 7888888885543 2 1368998774 77754 458888888774
No 25
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=49.08 E-value=33 Score=29.17 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=41.0
Q ss_pred HHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHH-HHcCC
Q 032073 21 SARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGT 99 (148)
Q Consensus 21 ~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m-~~~Gf 99 (148)
.+|.+-|.+...-.+. .||+++.-||+|+. ++.+-+.|..+.+..|.+||+ +++ | .++-.+.-.+ .+.|.
T Consensus 51 ~~Ra~dL~~a~a~~dp--i~aI~~~rGGyg~~-rlLp~Ld~~~i~~~~k~~PK~--~iG---y-SDiTaL~~al~~~~g~ 121 (305)
T PRK11253 51 GERLADLNSLADLTTP--NTIVLAVRGGYGAS-RLLAGIDWQGLAARQQDDPLL--IVG---H-SDFTAIQLALLAQANV 121 (305)
T ss_pred HHHHHHHHHHHhcCCC--ccEEEEecccCCHh-HhhhhCCHHHHhhhhccCCCE--EEE---E-cHHHHHHHHHHHhcCc
Confidence 6788888764101112 68999999999985 466666666665433323445 443 4 3444433333 35554
Q ss_pred C
Q 032073 100 V 100 (148)
Q Consensus 100 i 100 (148)
+
T Consensus 122 ~ 122 (305)
T PRK11253 122 I 122 (305)
T ss_pred e
Confidence 3
No 26
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=48.93 E-value=22 Score=23.87 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhhh
Q 032073 83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 126 (148)
Q Consensus 83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~~ 126 (148)
=|+.+...|+.+.+.|+|... ...+.+++.-.++++.++++.
T Consensus 32 ~~~~~~~yL~~L~~~gLI~~~--~~~Y~lTekG~~~l~~l~~~~ 73 (77)
T PF14947_consen 32 NYSTLKKYLKELEEKGLIKKK--DGKYRLTEKGKEFLEELEELI 73 (77)
T ss_dssp -HHHHHHHHHHHHHTTSEEEE--TTEEEE-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCeeCC--CCEEEECccHHHHHHHHHHHH
Confidence 467888999999999999663 468899999999999987753
No 27
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=48.70 E-value=67 Score=26.91 Aligned_cols=33 Identities=24% Similarity=0.690 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHH
Q 032073 51 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF 90 (148)
Q Consensus 51 TLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~ 90 (148)
||+-++|++....-. + -..||+|++ ||+|++..
T Consensus 78 tl~~i~emvk~ar~~--g--vt~PIiLmg---YYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQ--G--VTCPIILMG---YYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhccc--C--cccceeeee---cccHHHhh
Confidence 899999998776331 2 258999984 99998764
No 28
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=47.78 E-value=58 Score=27.85 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=19.8
Q ss_pred CccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 38 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~ 80 (148)
.||.+|.-|||. | ++|++.. .+|+++.+.
T Consensus 273 ~aDl~I~k~gg~-t---l~EA~a~----------G~PvI~~~~ 301 (391)
T PRK13608 273 SSQLMITKPGGI-T---ISEGLAR----------CIPMIFLNP 301 (391)
T ss_pred hhhEEEeCCchH-H---HHHHHHh----------CCCEEECCC
Confidence 359999888874 5 3444422 579999974
No 29
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=47.55 E-value=22 Score=28.80 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHH
Q 032073 55 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE 95 (148)
Q Consensus 55 lfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~ 95 (148)
|.|+.+|.|- ..|+|==|. |||+.|++.=+++.
T Consensus 124 LreAy~~vKa-------~RpiIRPN~-GFw~QLi~YE~qL~ 156 (198)
T KOG1718|consen 124 LREAYHWVKA-------RRPIIRPNV-GFWRQLIDYEQQLF 156 (198)
T ss_pred HHHHHHHHHh-------hCceeCCCc-cHHHHHHHHHHHhc
Confidence 6678888865 579988885 89999988755543
No 30
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=45.58 E-value=1e+02 Score=25.13 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=43.0
Q ss_pred cEEEEccCChhhHHHHHHHHHHH-hhhhhcCCCCCcEEEEeCccch-------HHHHHHHHH-HHHcCCCChhhcccceE
Q 032073 40 TAVVALPGGVGTLDEMFEILALI-QLERIGSELPVPFLVMNYDSFY-------KKLLDFLGD-CEDWGTVAKDEVASLWK 110 (148)
Q Consensus 40 dAfI~lPGG~GTLeElfEvlt~~-qlg~~~k~~~kPivlln~~gfw-------d~L~~~l~~-m~~~Gfi~~~~~~~li~ 110 (148)
-+.|+|||| .|.-.+++.+.-. +-+.+ .=+-+.+++.|.|| +.-..++++ +.+..=+.++.. ..+.
T Consensus 34 ~~~i~lsgG-stP~~~y~~L~~~~~~~~i---~w~~v~~f~~DEr~~vp~~~~~Sn~~~~~~~l~~~~~i~~~~i-~~~~ 108 (259)
T TIGR00502 34 PFVLGLPTG-GTPIGTYKQLIELHQAGKI---SFQNVTTFNMDEYAGLSEEHPESYHSFMHNNFFQHIDIKPENI-NILN 108 (259)
T ss_pred ceEEEEcCC-CChHHHHHHHHHHhhccCC---chhHeEEEeCeecCCCCCCchHHHHHHHHHHhcccCCCCHHHE-ecCC
Confidence 368999999 4666677766533 11222 12567888888898 455555554 333322333221 1111
Q ss_pred -EeCCHHHHHHHHHh
Q 032073 111 -ICDSNSEALSYLAE 124 (148)
Q Consensus 111 -~~d~~ee~l~~L~~ 124 (148)
-..++++..+..++
T Consensus 109 ~~~~~~~~~a~~y~~ 123 (259)
T TIGR00502 109 GNAPDLEAECRRYEE 123 (259)
T ss_pred CCccCHHHHHHHHHH
Confidence 11356665555544
No 31
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=45.27 E-value=53 Score=27.53 Aligned_cols=44 Identities=25% Similarity=0.680 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHH-----HHHHHHHHcC
Q 032073 47 GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLL-----DFLGDCEDWG 98 (148)
Q Consensus 47 GG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~-----~~l~~m~~~G 98 (148)
.|+ |++.+|+++....-.. .+.|++++. ||+++. +|++.+.+.|
T Consensus 67 ~G~-~~~~~~~~~~~ir~~~----~~~pivlm~---Y~N~i~~~G~e~F~~~~~~aG 115 (259)
T PF00290_consen 67 NGF-TLEKIFELVKEIRKKE----PDIPIVLMT---YYNPIFQYGIERFFKEAKEAG 115 (259)
T ss_dssp TT---HHHHHHHHHHHHHHC----TSSEEEEEE----HHHHHHH-HHHHHHHHHHHT
T ss_pred CCC-CHHHHHHHHHHHhccC----CCCCEEEEe---eccHHhccchHHHHHHHHHcC
Confidence 344 6888999886654222 479999995 999765 4666677755
No 32
>PHA03359 UL17 tegument protein; Provisional
Probab=44.70 E-value=11 Score=35.99 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=12.6
Q ss_pred cEEEEccCChhhHHHHH
Q 032073 40 TAVVALPGGVGTLDEMF 56 (148)
Q Consensus 40 dAfI~lPGG~GTLeElf 56 (148)
++.||||||||----+.
T Consensus 649 ~~~vVfPGGF~~~~~~a 665 (686)
T PHA03359 649 HALVVFPGGFALEADAA 665 (686)
T ss_pred CEEEEecCcceEEeehH
Confidence 69999999998533333
No 33
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=44.53 E-value=1.1e+02 Score=23.69 Aligned_cols=88 Identities=15% Similarity=0.256 Sum_probs=52.6
Q ss_pred CccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCC-hhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073 4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGG-VGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 82 (148)
Q Consensus 4 ~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG-~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g 82 (148)
||+|-. +.+.-.+. ..|-..+++.| |.+|+.=|- +=-.+--|.+=.-..+ .||+|++-...
T Consensus 49 ~~~fw~-D~k~a~iN--~iRT~~li~~a--------DvVVvrFGekYKQWNaAfDAg~a~Al-------gKplI~lh~~~ 110 (141)
T PF11071_consen 49 PNKFWR-DHKGAKIN--AIRTRTLIEKA--------DVVVVRFGEKYKQWNAAFDAGYAAAL-------GKPLITLHPEE 110 (141)
T ss_pred Cccccc-cchhhhhh--HHHHHHHHhhC--------CEEEEEechHHHHHHHHhhHHHHHHc-------CCCeEEecchh
Confidence 455554 22333333 34555566654 999998775 4444555555555544 57999998654
Q ss_pred chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHH
Q 032073 83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 123 (148)
Q Consensus 83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~ 123 (148)
.=-||.+. +. ....++++|+++++.|+
T Consensus 111 ~~HpLKEv----------da----~A~a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 111 LHHPLKEV----------DA----AALAVAETPEQVVEILR 137 (141)
T ss_pred ccccHHHH----------hH----hhHhhhCCHHHHHHHHH
Confidence 33343321 11 23358899999999885
No 34
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.26 E-value=34 Score=35.17 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=42.4
Q ss_pred EEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHH-HHHcCCCChhh
Q 032073 41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDE 104 (148)
Q Consensus 41 AfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~-m~~~Gfi~~~~ 104 (148)
.++++=||.+|+.=+.+..+-. ++.|++++...|==.++++++.. ..+.|+++...
T Consensus 271 vc~v~eGg~nti~~I~~~v~~~--------~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~~ 327 (1381)
T KOG3614|consen 271 VCLVLEGGPNTLAIILDYVTDK--------PPIPVVVCAGSGRAADILAFAHEEHGAPGILSDAE 327 (1381)
T ss_pred EEEEecCCchHHHHHHHHhccC--------CCCceEEEcCCchHHHHHHHHHHhhcCCCcccHHH
Confidence 6899999999988777766332 47899999988888888888765 45566655543
No 35
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=41.64 E-value=1.1e+02 Score=24.04 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHhhhccCCccccccccccccccC
Q 032073 113 DSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHG 145 (148)
Q Consensus 113 d~~ee~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 145 (148)
++.+++.++++.-+...-+---+.++||+.+|-
T Consensus 74 ~~~~ei~~f~~~~~g~~Fpv~~k~dvnG~~~~p 106 (183)
T PRK10606 74 GSDEEIKTYCRTTWGVTFPMFSKIEVNGEGRHP 106 (183)
T ss_pred CCHHHHHHHHHHccCCCceeEEEEccCCCCCCH
Confidence 477888888864454445555567888888774
No 36
>PF04559 Herpes_UL17: Herpesvirus UL17 protein; InterPro: IPR007640 U64 protein is required for DNA cleavage and packaging in herpes viruses. It has been shown to associate with immature B-type capsids [], and is required for the localisation of capsids and capsid proteins to the intranuclear sites where viral DNA is cleaved and packaged []. In the virion, U64 is a component of the tegument, which is a protein layer surrounding the viral capsid [].; GO: 0006323 DNA packaging, 0019012 virion
Probab=41.39 E-value=13 Score=34.27 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=10.3
Q ss_pred ccEEEEccCChh
Q 032073 39 RTAVVALPGGVG 50 (148)
Q Consensus 39 sdAfI~lPGG~G 50 (148)
-+++++|||||+
T Consensus 522 L~a~lVLPGGFa 533 (540)
T PF04559_consen 522 LNAWLVLPGGFA 533 (540)
T ss_pred ceEEEEecCcEE
Confidence 369999999985
No 37
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=41.25 E-value=39 Score=29.09 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=37.5
Q ss_pred CCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC-----ccchHHHHHHHHHH
Q 032073 37 CDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGDC 94 (148)
Q Consensus 37 ~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~-----~gfwd~L~~~l~~m 94 (148)
.+.|+||+.=| .=||+|-.-.+.+.--+ .+|||||.+- .--.|...++.+.+
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l~~-----~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFMLEN-----LGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHHhC-----CCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 34699999975 78999999999876321 3799999975 22456666666553
No 38
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.58 E-value=1.3e+02 Score=25.44 Aligned_cols=67 Identities=27% Similarity=0.444 Sum_probs=40.0
Q ss_pred ccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc--chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHH
Q 032073 45 LPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS--FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 122 (148)
Q Consensus 45 lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g--fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L 122 (148)
|=+|+ |++..+|++....- ++...|++|+.--+ |+.++.+|++.+.+.|. + . +.+.|=|-|--+.+
T Consensus 72 L~~g~-t~~~~lel~~~~r~----~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv----d--G-livpDLP~ee~~~~ 139 (265)
T COG0159 72 LAAGV-TLEDTLELVEEIRA----KGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV----D--G-LLVPDLPPEESDEL 139 (265)
T ss_pred HHCCC-CHHHHHHHHHHHHh----cCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC----C--E-EEeCCCChHHHHHH
Confidence 44454 77888888865531 11368999995211 44467788888888884 1 2 33555554444434
Q ss_pred H
Q 032073 123 A 123 (148)
Q Consensus 123 ~ 123 (148)
.
T Consensus 140 ~ 140 (265)
T COG0159 140 L 140 (265)
T ss_pred H
Confidence 3
No 39
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=40.38 E-value=87 Score=22.77 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=42.9
Q ss_pred CCcEEEEeCc---c---chHHHHHHHHHHHHcCCC----ChhhcccceEEeCCHHHHHHHHHhhhccCCccccccccccc
Q 032073 72 PVPFLVMNYD---S---FYKKLLDFLGDCEDWGTV----AKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLK 141 (148)
Q Consensus 72 ~kPivlln~~---g---fwd~L~~~l~~m~~~Gfi----~~~~~~~li~~~d~~ee~l~~L~~~~~~~~~~~~~~~~~~~ 141 (148)
.|+++++|+. | -|..|.++.+...+.||. +-.+- .. .=-.+.+|+.+....-+.+...---+.+|||+
T Consensus 21 Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~~gl~ILaFPcnqF-g~-QEp~~~~ei~~~~~~~~~~~F~vf~ki~VnG~ 98 (108)
T PF00255_consen 21 GKVLLIVNVASKCGYTKQYKQLNELYEKYKDKGLEILAFPCNQF-GN-QEPGSNEEIKEFCKEKFGVTFPVFEKIDVNGP 98 (108)
T ss_dssp TSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEBSTT-TT-TTSSCHHHHHHHHCHCHT-SSEEBS-BBSSST
T ss_pred CCEEEEEecccccCCccccHHHHHHHHHHhcCCeEEEeeehHHh-cc-ccCCCHHHHHHHHHhccCCcccceEEEEecCC
Confidence 6899999972 2 466777777777666641 00000 00 01256677666665545556666678999999
Q ss_pred cccCC
Q 032073 142 STHGI 146 (148)
Q Consensus 142 ~~~~~ 146 (148)
.+|-+
T Consensus 99 ~ahPl 103 (108)
T PF00255_consen 99 DAHPL 103 (108)
T ss_dssp TB-HH
T ss_pred CCcHH
Confidence 99853
No 40
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=39.86 E-value=30 Score=29.57 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=34.7
Q ss_pred CccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC-----ccchHHHHHHHHH
Q 032073 38 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGD 93 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~-----~gfwd~L~~~l~~ 93 (148)
+.|+||+.=| .=||+|....+.+.-- .+|||||.+- ....|...++.+.
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l~------~~kPVVlTGA~rp~~~~~sDg~~NL~~A 131 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTLE------NDKPVVLTGSMRPSTELSADGPLNLYNA 131 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHhc------CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 4699999965 7899999999987532 2799999964 2244555555544
No 41
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=39.78 E-value=62 Score=24.52 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=21.8
Q ss_pred ccEEEEccCC-----hhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 39 RTAVVALPGG-----VGTLDEMFEILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 39 sdAfI~lPGG-----~GTLeElfEvlt~~qlg~~~k~~~kPivlln~ 80 (148)
+|.+|+..|| .++.......+.+...-.. .++|+++++.
T Consensus 64 ~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~~~g~ 107 (286)
T PF04230_consen 64 ADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKK---LGKPVIILGQ 107 (286)
T ss_pred CCeEEEECCcccccCCCcchhhHHHHHHHHHHHh---cCCCeEEECc
Confidence 4656666664 3333333233444444332 4899999986
No 42
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=39.42 E-value=1.4e+02 Score=26.44 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=31.0
Q ss_pred CccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchH---HHHHHHHHHHHcCCCCh
Q 032073 38 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK---KLLDFLGDCEDWGTVAK 102 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd---~L~~~l~~m~~~Gfi~~ 102 (148)
++...|-+|.|+.. .+-|++++--.++|. ++...++.++++|-+.+
T Consensus 193 ~r~v~VY~P~~y~~-------------------~~~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P 241 (411)
T PRK10439 193 SRRVWIYTTGDAAP-------------------EERPLAILLDGQFWAESMPVWPALDSLTHRGQLPP 241 (411)
T ss_pred ceEEEEEECCCCCC-------------------CCCCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCc
Confidence 36889999988520 135777664344664 36677888888897765
No 43
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=38.76 E-value=1.4e+02 Score=24.17 Aligned_cols=14 Identities=14% Similarity=0.031 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhhhc
Q 032073 114 SNSEALSYLAEFYD 127 (148)
Q Consensus 114 ~~ee~l~~L~~~~~ 127 (148)
+++++.+.|+....
T Consensus 307 ~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 307 LPEKLLEALLKLLL 320 (348)
T ss_pred CHHHHHHHHHHHHc
Confidence 48888888877654
No 44
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=38.40 E-value=47 Score=29.57 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=33.7
Q ss_pred chHH-HHHHHHHHHHcCCCChhhcc--cceEEeCCHHHHHHHHHh
Q 032073 83 FYKK-LLDFLGDCEDWGTVAKDEVA--SLWKICDSNSEALSYLAE 124 (148)
Q Consensus 83 fwd~-L~~~l~~m~~~Gfi~~~~~~--~li~~~d~~ee~l~~L~~ 124 (148)
.|.- +-+.++.|+.+|.|+++.++ .+...+.+++|+-+.+++
T Consensus 254 ~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~ 298 (386)
T PLN02668 254 LFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEA 298 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhh
Confidence 3555 77778899999999998753 344788999999999975
No 45
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=38.29 E-value=89 Score=25.92 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=10.8
Q ss_pred ccEEEEccCChhhHHHH
Q 032073 39 RTAVVALPGGVGTLDEM 55 (148)
Q Consensus 39 sdAfI~lPGG~GTLeEl 55 (148)
+|.+|+ |+|..|+ |.
T Consensus 262 aDl~v~-~sG~~~l-Ea 276 (380)
T PRK00025 262 ADAALA-ASGTVTL-EL 276 (380)
T ss_pred CCEEEE-CccHHHH-HH
Confidence 586666 8888887 55
No 46
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.23 E-value=70 Score=26.59 Aligned_cols=46 Identities=28% Similarity=0.670 Sum_probs=29.6
Q ss_pred cCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHH-----HHHHHHHHcCC
Q 032073 46 PGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLL-----DFLGDCEDWGT 99 (148)
Q Consensus 46 PGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~-----~~l~~m~~~Gf 99 (148)
=.|+ |++++|+.+.-..-. .++.|++++. ||+++. +|++.+.+.|.
T Consensus 68 ~~G~-~~~~~~~~~~~~r~~----~~~~p~vlm~---Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 68 AAGV-TLADVFELVREIREK----DPTIPIVLMT---YYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred HcCC-CHHHHHHHHHHHHhc----CCCCCEEEEe---cccHHhhcCHHHHHHHHHHcCC
Confidence 3443 577788877554311 1468998774 777654 47888888774
No 47
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=38.17 E-value=1.6e+02 Score=23.10 Aligned_cols=80 Identities=10% Similarity=0.203 Sum_probs=49.9
Q ss_pred CccEEEEccCChhhHHHHHH-----HHHH---HhhhhhcCCCCCcEEEEeCccchHHH-HHHHHHHHHcC--CCChhhcc
Q 032073 38 DRTAVVALPGGVGTLDEMFE-----ILAL---IQLERIGSELPVPFLVMNYDSFYKKL-LDFLGDCEDWG--TVAKDEVA 106 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfE-----vlt~---~qlg~~~k~~~kPivlln~~gfwd~L-~~~l~~m~~~G--fi~~~~~~ 106 (148)
.+|++|+.|=-.+|+.-+.- .++- ..+. .++|++++=.+.+..+. .+-++.+.+.| ++.+..
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~-----~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P~~-- 147 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLK-----ERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPMP-- 147 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHh-----cCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECCCC--
Confidence 45999999999999977653 1221 1232 26899999754333322 22234566667 555532
Q ss_pred cceEEeCCHHHHHHHHHh
Q 032073 107 SLWKICDSNSEALSYLAE 124 (148)
Q Consensus 107 ~li~~~d~~ee~l~~L~~ 124 (148)
..+.--.+++|+++++-.
T Consensus 148 g~~~~p~~~~~~~~~i~~ 165 (181)
T TIGR00421 148 AFYTRPKSVEDMIDFIVG 165 (181)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 455666899997777654
No 48
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=37.96 E-value=40 Score=27.77 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=31.2
Q ss_pred cEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHH
Q 032073 40 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 86 (148)
Q Consensus 40 dAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~ 86 (148)
.+.|+|+|| +|...++|.|.-.--+.. .=+-|.++|.|.||.|
T Consensus 33 ~~~l~LsgG-sTP~~~ye~L~~~~~~~~---~w~~v~~f~~DEr~vp 75 (238)
T COG0363 33 RAVLALSGG-STPLALYEALVKLPQGQL---DWSKVTIFNLDERVVP 75 (238)
T ss_pred cEEEEECCC-CCHHHHHHHHHhhhccCC---CchheEEEeccccccC
Confidence 689999999 788888888865421333 2467888888777763
No 49
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=37.70 E-value=2.3e+02 Score=24.48 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=41.5
Q ss_pred ccEEE-EccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc-chHHHHHHHHHHHHcCCCChhhcccceEEeCCHH
Q 032073 39 RTAVV-ALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS-FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 116 (148)
Q Consensus 39 sdAfI-~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g-fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~e 116 (148)
-|+++ .++||+...+++.+.+.-..- .. +.+||+++.. .| ..+...+. +.+.|+ -+.+.++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~-~~--~~~kPvv~~~-~g~~~~~~~~~---L~~~Gi--------~ip~f~~pe 375 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVK-EV--GVTVPLVVRL-EGTNVELGKKI---LAESGL--------NIIAADTLD 375 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH-hc--CCCCcEEEEe-CCCCHHHHHHH---HHHCCC--------CceecCCHH
Confidence 46554 467888878888877765422 21 1378995543 34 22333222 333332 134779999
Q ss_pred HHHHHHHh
Q 032073 117 EALSYLAE 124 (148)
Q Consensus 117 e~l~~L~~ 124 (148)
++++.+..
T Consensus 376 ~A~~al~~ 383 (388)
T PRK00696 376 DAAQKAVE 383 (388)
T ss_pred HHHHHHHH
Confidence 99999874
No 50
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=37.00 E-value=39 Score=22.91 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=22.8
Q ss_pred cEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCc
Q 032073 40 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 81 (148)
Q Consensus 40 dAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~ 81 (148)
--.|.+|+ |+|||+++.+.. +|. . |--++|.+
T Consensus 19 GKvi~lP~---SleeLl~ia~~k-fg~-----~-~~~v~~~d 50 (69)
T PF11834_consen 19 GKVIWLPD---SLEELLKIASEK-FGF-----S-ATKVLNED 50 (69)
T ss_pred CEEEEcCc---cHHHHHHHHHHH-hCC-----C-ceEEEcCC
Confidence 57899995 999999998764 432 2 55556644
No 51
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=36.96 E-value=58 Score=27.07 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=41.6
Q ss_pred HHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHc-CC
Q 032073 21 SARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDW-GT 99 (148)
Q Consensus 21 ~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~-Gf 99 (148)
.+|.+-|.+.- . --+.||+++.=||.|+. ++.+-+.|.++.++ +|+ +++ | .++-.++-.+... |.
T Consensus 48 ~~Ra~dL~~a~-~--d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~----pK~--~iG---y-SDiTaL~~~l~~~~g~ 113 (282)
T cd07025 48 EERAADLNAAF-A--DPEIKAIWCARGGYGAN-RLLPYLDYDLIRAN----PKI--FVG---Y-SDITALHLALYAKTGL 113 (282)
T ss_pred HHHHHHHHHHh-h--CCCCCEEEEcCCcCCHH-HhhhhCCHHHHhhC----CeE--EEE---e-cHHHHHHHHHHHhcCc
Confidence 67777777642 1 12468999999999995 57777888887542 555 443 4 4444444444333 54
Q ss_pred CC
Q 032073 100 VA 101 (148)
Q Consensus 100 i~ 101 (148)
.+
T Consensus 114 ~t 115 (282)
T cd07025 114 VT 115 (282)
T ss_pred eE
Confidence 43
No 52
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=36.85 E-value=47 Score=29.58 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=35.8
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC-----ccchHHHHHHHHH
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGD 93 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~-----~gfwd~L~~~l~~ 93 (148)
.|+||++=| .=||+|-.-.+.++--+ .+|||||.+- .---|...++++.
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-----~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-----LPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-----CCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 599999976 78999999999876321 2799999985 2244566666655
No 53
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=36.61 E-value=2.5e+02 Score=23.37 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=33.4
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHH
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 118 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~ 118 (148)
+|.+|.-|||. |+ +|++.. .+|+|+++..+-... .-.+.+.+.|+ .....|++++
T Consensus 274 aD~~v~~~gg~-t~---~EA~a~----------g~PvI~~~~~~g~~~--~n~~~~~~~G~---------~~~~~~~~~l 328 (380)
T PRK13609 274 TSCMITKPGGI-TL---SEAAAL----------GVPVILYKPVPGQEK--ENAMYFERKGA---------AVVIRDDEEV 328 (380)
T ss_pred ccEEEeCCCch-HH---HHHHHh----------CCCEEECCCCCCcch--HHHHHHHhCCc---------EEEECCHHHH
Confidence 59988777763 53 344422 579988763222111 11122233343 2245677777
Q ss_pred HHHHHhhh
Q 032073 119 LSYLAEFY 126 (148)
Q Consensus 119 l~~L~~~~ 126 (148)
.+.|....
T Consensus 329 ~~~i~~ll 336 (380)
T PRK13609 329 FAKTEALL 336 (380)
T ss_pred HHHHHHHH
Confidence 77776654
No 54
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=36.18 E-value=1.9e+02 Score=22.92 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=28.4
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccch
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 84 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfw 84 (148)
..+.|+++|| .|...+++.+.-.. .+ .=+-+.+++.|.+|
T Consensus 23 ~~~~l~lsGG-stp~~~y~~L~~~~--~i---~w~~v~~f~~DEr~ 62 (219)
T cd01400 23 GRFSLALSGG-STPKPLYELLAAAP--AL---DWSKVHVFLGDERC 62 (219)
T ss_pred CeEEEEECCC-ccHHHHHHHhcccc--CC---CCceEEEEEeeccc
Confidence 3789999999 57778888886553 12 13567777777777
No 55
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=35.67 E-value=56 Score=25.40 Aligned_cols=64 Identities=23% Similarity=0.435 Sum_probs=39.2
Q ss_pred EEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHH-HHHHHcCCCChhhccc-ceEEe-CCHHHHH
Q 032073 43 VALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVAS-LWKIC-DSNSEAL 119 (148)
Q Consensus 43 I~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l-~~m~~~Gfi~~~~~~~-li~~~-d~~ee~l 119 (148)
|+|-||.|| .+..+....+||++-+... + |++++. +.+...|+ ++ ++++. ...+++.
T Consensus 3 vIla~G~Gt-----------Rl~plt~~~pK~ll~i~g~-~--pli~~~l~~l~~~g~------~~ii~V~~~~~~~~i~ 62 (248)
T PF00483_consen 3 VILAGGKGT-----------RLRPLTDTIPKPLLPIGGK-Y--PLIDYVLENLANAGI------KEIIVVVNGYKEEQIE 62 (248)
T ss_dssp EEEEESCCG-----------GGTTTTTTSSGGGSEETTE-E--EHHHHHHHHHHHTTC------SEEEEEEETTTHHHHH
T ss_pred EEECCCCCc-----------cCchhhhccccccceecCC-C--cchhhhhhhhcccCC------ceEEEEEeeccccccc
Confidence 677899999 2222222358998888742 3 676665 55777776 23 44444 5566677
Q ss_pred HHHHhhh
Q 032073 120 SYLAEFY 126 (148)
Q Consensus 120 ~~L~~~~ 126 (148)
+.+.+..
T Consensus 63 ~~~~~~~ 69 (248)
T PF00483_consen 63 EHLGSGY 69 (248)
T ss_dssp HHHTTSG
T ss_pred ccccccc
Confidence 7776543
No 56
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=35.65 E-value=45 Score=28.70 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=35.3
Q ss_pred CccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC-----ccchHHHHHHHHH
Q 032073 38 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGD 93 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~-----~gfwd~L~~~l~~ 93 (148)
+.|+||++=| .=||+|-.-.+.+.-- .+|||||.+- .--.|...++++.
T Consensus 77 ~~dG~VVtHG-TDTme~TA~~Ls~~l~------~~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 77 DYDGFVITHG-TDTMAYTAAALSFMLE------TPKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred cCCeEEEccC-CchHHHHHHHHHHHcC------CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 4699999975 7899999999887521 2799999975 2244555555554
No 57
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=35.55 E-value=1.8e+02 Score=23.91 Aligned_cols=46 Identities=22% Similarity=0.569 Sum_probs=29.9
Q ss_pred cCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHH-----HHHHHHHHHHcCC
Q 032073 46 PGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK-----LLDFLGDCEDWGT 99 (148)
Q Consensus 46 PGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~-----L~~~l~~m~~~Gf 99 (148)
=.|+ |++.+|+++.... +.. .+.|++++. ||++ +.+|++.+.+.|.
T Consensus 66 ~~G~-~~~~~~~~v~~ir--~~~--~~~plv~m~---Y~Npi~~~G~e~f~~~~~~aGv 116 (256)
T TIGR00262 66 RAGM-TPEKCFELLKKVR--QKH--PNIPIGLLT---YYNLIFRKGVEEFYAKCKEVGV 116 (256)
T ss_pred HcCC-CHHHHHHHHHHHH--hcC--CCCCEEEEE---eccHHhhhhHHHHHHHHHHcCC
Confidence 3443 7788888876543 111 367988664 7765 4568888888774
No 58
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=35.38 E-value=66 Score=27.25 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEe
Q 032073 36 SCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 79 (148)
Q Consensus 36 ~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln 79 (148)
+.+.|+||++= |.-||+|....+++.-- . .+|||||.+
T Consensus 70 ~~~~~GvVVtH-GTDTme~tA~~Ls~~l~-~----l~kPVVlTG 107 (313)
T PF00710_consen 70 LDDYDGVVVTH-GTDTMEETAFFLSLLLD-N----LDKPVVLTG 107 (313)
T ss_dssp HTTCSEEEEE---STTHHHHHHHHHHHEE-S-----SSEEEEE-
T ss_pred HHhcCeEEEec-CchHHHHHHHHHHHHhc-C----CCCCEEEeC
Confidence 34579999986 57899999999987631 1 279999996
No 59
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=35.24 E-value=88 Score=26.98 Aligned_cols=62 Identities=24% Similarity=0.407 Sum_probs=35.9
Q ss_pred EEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHH-HHHHHcCCCChhhcccceEE-eCCHHHHH
Q 032073 42 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKI-CDSNSEAL 119 (148)
Q Consensus 42 fI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l-~~m~~~Gfi~~~~~~~li~~-~d~~ee~l 119 (148)
-|+|-||.||= +.-+ ....|||++=+.. .|++++. +.+.+.|+ + +.+.. .--.+.+.
T Consensus 4 avILagG~GtR--------LrPl---T~~~PKPllpI~g----kPii~~~l~~L~~~Gv---~---eivi~~~y~~~~i~ 62 (358)
T COG1208 4 AVILAGGYGTR--------LRPL---TDDRPKPLLPIAG----KPLIEYVLEALAAAGV---E---EIVLVVGYLGEQIE 62 (358)
T ss_pred EEEEeCCcccc--------cccc---ccCCCcccceeCC----ccHHHHHHHHHHHCCC---c---EEEEEeccchHHHH
Confidence 47888999991 1111 2235899987763 5776665 44667786 2 23333 34445555
Q ss_pred HHHHh
Q 032073 120 SYLAE 124 (148)
Q Consensus 120 ~~L~~ 124 (148)
+++.+
T Consensus 63 ~~~~d 67 (358)
T COG1208 63 EYFGD 67 (358)
T ss_pred HHHhc
Confidence 55554
No 60
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=35.14 E-value=1.2e+02 Score=23.87 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=51.9
Q ss_pred CccEEEEccCChhhHHHHH--------HHHHHHhhhhhcCCCCCcEEEEeC--ccchHH--HHHHHHHHHHcC--CCChh
Q 032073 38 DRTAVVALPGGVGTLDEMF--------EILALIQLERIGSELPVPFLVMNY--DSFYKK--LLDFLGDCEDWG--TVAKD 103 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElf--------Evlt~~qlg~~~k~~~kPivlln~--~gfwd~--L~~~l~~m~~~G--fi~~~ 103 (148)
.+|++|+.|=-.+|+--+. .... ..++ .++|++++=- ...|.. ..+-++.+.+.| ++.+.
T Consensus 77 ~aD~~vIaPaTantlakiA~GiaDnllt~~~-~a~~-----~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~ 150 (182)
T PRK07313 77 RADLFLVAPATANTIAKLAHGIADDLVTSVA-LALP-----ATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPK 150 (182)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHH-HHcC-----CCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCC
Confidence 4699999999999987654 2222 1221 2689998842 246663 233455667777 34443
Q ss_pred hcccc-------eEEeCCHHHHHHHHHhhhc
Q 032073 104 EVASL-------WKICDSNSEALSYLAEFYD 127 (148)
Q Consensus 104 ~~~~l-------i~~~d~~ee~l~~L~~~~~ 127 (148)
. .. +.--.+++++++++.++..
T Consensus 151 ~--g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 151 E--GLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred C--CccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 1 12 3445899999999988654
No 61
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=35.06 E-value=1.8e+02 Score=23.40 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=28.0
Q ss_pred cEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccch
Q 032073 40 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 84 (148)
Q Consensus 40 dAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfw 84 (148)
.+-|+|+|| .|...+++.+.-.++ .=.-+.+++.|.+|
T Consensus 29 ~~~lalsGG-stp~~~y~~L~~~~i------~w~~v~~f~~DER~ 66 (233)
T TIGR01198 29 QFSLALSGG-RSPIALLEALAAQPL------DWSRIHLFLGDERY 66 (233)
T ss_pred cEEEEECCC-ccHHHHHHHHhhCCC------CcceEEEEEecccc
Confidence 578999999 688888888875322 13567777777787
No 62
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=34.95 E-value=2.1e+02 Score=23.62 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=28.5
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHcCC
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGT 99 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~Gf 99 (148)
+|++|.- ||.+|+-|. + . ..+|++++...+.++.... .+.+.+.|.
T Consensus 248 ad~vI~~-~G~~t~~Ea---~---~-------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 248 AELVITH-GGFSLISEA---L---S-------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred CCEEEEC-CChHHHHHH---H---H-------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 4877776 566785552 2 1 2579999987666665433 244566664
No 63
>PRK11096 ansB L-asparaginase II; Provisional
Probab=34.89 E-value=68 Score=27.93 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=35.6
Q ss_pred CCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC-----ccchHHHHHHHHH
Q 032073 37 CDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGD 93 (148)
Q Consensus 37 ~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~-----~gfwd~L~~~l~~ 93 (148)
.+.|+||+.= |.=||+|....+.+. +. .+|||||.+- .-..|...++++.
T Consensus 99 ~~~dGiVVtH-GTDTme~tA~~Ls~~-~~-----~~kPVVlTGAmrP~~~~~sDg~~NL~~A 153 (347)
T PRK11096 99 DKTDGFVITH-GTDTMEETAYFLDLT-VK-----CDKPVVLVGAMRPSTAMSADGPLNLYNA 153 (347)
T ss_pred CCCCEEEEeC-CCchHHHHHHHHHHh-cc-----CCCCEEEeCCCCCCCCcCCchHHHHHHH
Confidence 4568999885 578999999999885 32 3799999983 2345555554444
No 64
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=34.78 E-value=22 Score=24.05 Aligned_cols=14 Identities=43% Similarity=0.959 Sum_probs=12.0
Q ss_pred ccCChhhHHHHHHH
Q 032073 45 LPGGVGTLDEMFEI 58 (148)
Q Consensus 45 lPGG~GTLeElfEv 58 (148)
.|||.|.++.+++.
T Consensus 44 ~~GG~G~~~~l~~~ 57 (84)
T PF09369_consen 44 VPGGAGYAERLFER 57 (84)
T ss_pred CCCchhhHhhhcCh
Confidence 49999999988776
No 65
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=34.43 E-value=65 Score=27.48 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=34.9
Q ss_pred CccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC-----ccchHHHHHHHHH
Q 032073 38 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGD 93 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~-----~gfwd~L~~~l~~ 93 (148)
+.|+||++=| .-||+|..-.+.+. +.. .+|||||.+- .--.|...++++.
T Consensus 77 ~~dG~VVtHG-TDTmeeTA~~Ls~~-l~~----l~kPVVlTGa~rp~~~~~sDg~~NL~~A 131 (323)
T smart00870 77 GYDGVVVTHG-TDTLEETAYFLSLT-LDS----LDKPVVLTGAMRPATALSSDGPANLLDA 131 (323)
T ss_pred CCCEEEEecC-CccHHHHHHHHHHH-hhc----CCCCEEEECCCCCCCCCCchhHHHHHHH
Confidence 4589999864 78999999999875 211 2799999964 2244555555554
No 66
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=34.05 E-value=1.5e+02 Score=24.98 Aligned_cols=66 Identities=12% Similarity=-0.021 Sum_probs=34.9
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHH
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 118 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~ 118 (148)
+|+ ++..||.||+-|... ..+|++++-. ..+.. ...+.+.+.|.-. .+..-.-+++++
T Consensus 292 ~~~-~I~hgG~~t~~Eal~-------------~G~P~v~~p~--~~dq~-~~a~~l~~~g~g~-----~l~~~~~~~~~l 349 (392)
T TIGR01426 292 ADA-FITHGGMNSTMEALF-------------NGVPMVAVPQ--GADQP-MTARRIAELGLGR-----HLPPEEVTAEKL 349 (392)
T ss_pred CCE-EEECCCchHHHHHHH-------------hCCCEEecCC--cccHH-HHHHHHHHCCCEE-----EeccccCCHHHH
Confidence 475 557889999766432 1579998853 22322 2334455656311 011111256667
Q ss_pred HHHHHhhh
Q 032073 119 LSYLAEFY 126 (148)
Q Consensus 119 l~~L~~~~ 126 (148)
.+.+++..
T Consensus 350 ~~ai~~~l 357 (392)
T TIGR01426 350 REAVLAVL 357 (392)
T ss_pred HHHHHHHh
Confidence 66666554
No 67
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=33.82 E-value=60 Score=28.09 Aligned_cols=48 Identities=23% Similarity=0.462 Sum_probs=34.9
Q ss_pred CCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEE-eCccchH--HHHHHHHHHHHcCCCCh
Q 032073 37 CDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM-NYDSFYK--KLLDFLGDCEDWGTVAK 102 (148)
Q Consensus 37 ~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivll-n~~gfwd--~L~~~l~~m~~~Gfi~~ 102 (148)
.||..+|.+|=|++.++ +-|++++ +...||+ ++-..++.++.+|-|.+
T Consensus 80 ~~~~~vv~lppgy~~~~------------------k~pvl~~~DG~~~~~~g~i~~~~dsli~~g~i~p 130 (299)
T COG2382 80 SERRRVVYLPPGYNPLE------------------KYPVLYLQDGQDWFRSGRIPRILDSLIAAGEIPP 130 (299)
T ss_pred cceeEEEEeCCCCCccc------------------cccEEEEeccHHHHhcCChHHHHHHHHHcCCCCC
Confidence 46789999999976643 4476655 4344776 66778899999998876
No 68
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=33.44 E-value=44 Score=24.07 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.2
Q ss_pred ccchHHHHHHHHHHHHc
Q 032073 81 DSFYKKLLDFLGDCEDW 97 (148)
Q Consensus 81 ~gfwd~L~~~l~~m~~~ 97 (148)
..||+|+++||+.-.++
T Consensus 24 ~~Fy~Pi~~wl~~Yl~~ 40 (99)
T PF09345_consen 24 FAFYQPILDWLEAYLAE 40 (99)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 46999999999986665
No 69
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=33.43 E-value=47 Score=24.00 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=22.5
Q ss_pred EEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEe
Q 032073 42 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 79 (148)
Q Consensus 42 fI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln 79 (148)
+|+.=||=||+.|+...+--. .. . .+..|++++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~--~~-~-~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKR--EL-P-LPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHHhc--cc-c-cCCCcEEEeC
Confidence 677789999999998776322 11 0 0126888885
No 70
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=32.21 E-value=1.7e+02 Score=22.76 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=51.8
Q ss_pred CccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCC-hhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073 4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGG-VGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 82 (148)
Q Consensus 4 ~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG-~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g 82 (148)
||+|-. +-+.-.+.. .|-..+++.| |.+|+.=|- +=--+--|++=.-.-+ .||+|++-...
T Consensus 52 ~~~fw~-D~k~a~iNa--iRT~~li~~a--------DvvVvrFGekYKQWNaAfDAg~aaAl-------gKplI~lh~~~ 113 (144)
T TIGR03646 52 PSNFWR-DDAAASINN--IRTRKLIEKA--------DVVIALFGEKYKQWNAAFDAGYAAAL-------GKPLIILRPEE 113 (144)
T ss_pred Cccccc-cccccchhh--HHHHHHHhhC--------CEEEEEechHHHHHHHHhhHHHHHHc-------CCCeEEecchh
Confidence 445444 223333333 4555567754 999998775 4444555555444444 57999998653
Q ss_pred chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHH
Q 032073 83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 123 (148)
Q Consensus 83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~ 123 (148)
.=-||.+. +. ....++++|+++++.|+
T Consensus 114 ~~HpLKEv----------da----aA~avaetp~Qvv~iL~ 140 (144)
T TIGR03646 114 LIHPLKEV----------DN----KAQAVVETPEQAIETLK 140 (144)
T ss_pred ccccHHHH----------hH----HHHHHhcCHHHHHHHHH
Confidence 33333221 11 22358899999999885
No 71
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=31.75 E-value=64 Score=25.31 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=13.2
Q ss_pred CccEEEEccCChhh--HHHHHH
Q 032073 38 DRTAVVALPGGVGT--LDEMFE 57 (148)
Q Consensus 38 esdAfI~lPGG~GT--LeElfE 57 (148)
+.| .|++|||.-| ++.|..
T Consensus 40 ~~D-~lilPGG~~~~~~~~L~~ 60 (198)
T cd03130 40 DAD-GLYLGGGYPELFAEELSA 60 (198)
T ss_pred CCC-EEEECCCchHHHHHHHHh
Confidence 346 7889999877 455544
No 72
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=31.63 E-value=1.9e+02 Score=20.88 Aligned_cols=11 Identities=55% Similarity=0.860 Sum_probs=5.9
Q ss_pred cEEEEccCChh
Q 032073 40 TAVVALPGGVG 50 (148)
Q Consensus 40 dAfI~lPGG~G 50 (148)
|++|+|=||..
T Consensus 1 d~IvVLG~~~~ 11 (150)
T cd06259 1 DAIVVLGGGVN 11 (150)
T ss_pred CEEEEeCCccC
Confidence 45555555544
No 73
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=31.53 E-value=57 Score=29.26 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=37.1
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC-----ccchHHHHHHHHHH
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGDC 94 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~-----~gfwd~L~~~l~~m 94 (148)
.|+||++=| .=||+|-.-.+.++- + .+|||||.+- .---|...+++...
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l-~-----~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML-K-----TPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc-C-----CCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 699999975 789999999998863 2 3899999985 22556666766653
No 74
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=31.49 E-value=2.9e+02 Score=22.62 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=34.7
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc--chHHHHHHHHHHHHcCCCChhhcccceEEeCC--
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS--FYKKLLDFLGDCEDWGTVAKDEVASLWKICDS-- 114 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g--fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~-- 114 (148)
+|++|. ++|.+|+- |++.. .+|++.....+ ..+... .-+.+.+.|. ..+.-.+|
T Consensus 253 ~d~~i~-~~g~~~~~---Ea~~~----------g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~~-------g~~~~~~~~~ 310 (357)
T PRK00726 253 ADLVIC-RAGASTVA---ELAAA----------GLPAILVPLPHAADDHQTA-NARALVDAGA-------ALLIPQSDLT 310 (357)
T ss_pred CCEEEE-CCCHHHHH---HHHHh----------CCCEEEecCCCCCcCcHHH-HHHHHHHCCC-------EEEEEcccCC
Confidence 598885 56666643 33322 57999886421 122111 1122344441 12222334
Q ss_pred HHHHHHHHHhhhc
Q 032073 115 NSEALSYLAEFYD 127 (148)
Q Consensus 115 ~ee~l~~L~~~~~ 127 (148)
++++.+.|+..+.
T Consensus 311 ~~~l~~~i~~ll~ 323 (357)
T PRK00726 311 PEKLAEKLLELLS 323 (357)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888877654
No 75
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=31.43 E-value=91 Score=19.52 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=20.8
Q ss_pred cEEEEccCChhhHHHH---HHHHHHHhhhhhcCCCCCcEEEEe
Q 032073 40 TAVVALPGGVGTLDEM---FEILALIQLERIGSELPVPFLVMN 79 (148)
Q Consensus 40 dAfI~lPGG~GTLeEl---fEvlt~~qlg~~~k~~~kPivlln 79 (148)
|+ |++|||.++..+. -..+.+.+-..- +.+|++-.-
T Consensus 48 d~-lii~g~~~~~~~~~~~~~~~~~i~~~~~---~~~~i~~~c 86 (115)
T cd01653 48 DG-LILPGGPGTPDDLARDEALLALLREAAA---AGKPILGIC 86 (115)
T ss_pred CE-EEECCCCCchhhhccCHHHHHHHHHHHH---cCCEEEEEC
Confidence 54 7889998887765 444444433221 246766444
No 76
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=31.39 E-value=23 Score=28.21 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=9.7
Q ss_pred ccEEEEccCChhhH
Q 032073 39 RTAVVALPGGVGTL 52 (148)
Q Consensus 39 sdAfI~lPGG~GTL 52 (148)
.| .|++|||.+|-
T Consensus 40 ~D-~LILPGG~~t~ 52 (179)
T PRK13526 40 ID-RLVIPGGESTT 52 (179)
T ss_pred CC-EEEECCChHHH
Confidence 46 56899998874
No 77
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=31.03 E-value=84 Score=27.36 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=28.1
Q ss_pred CccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 38 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~ 80 (148)
+.|+||++=| .-||+|....+.+..- .+|||||.+-
T Consensus 105 ~~~GiVVtHG-TDTme~tA~~Lsl~l~------~~kPVVlTGA 140 (349)
T TIGR00520 105 DYDGIVITHG-TDTLEETAYFLDLTVK------SDKPVVIVGA 140 (349)
T ss_pred CCCEEEEeCC-cccHHHHHHHHHHHcC------CCCCEEEECC
Confidence 3589999865 7899999999987532 2799999953
No 78
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=30.35 E-value=53 Score=16.82 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=15.0
Q ss_pred ccchHHHHHHHHHHHHcCC
Q 032073 81 DSFYKKLLDFLGDCEDWGT 99 (148)
Q Consensus 81 ~gfwd~L~~~l~~m~~~Gf 99 (148)
.|.|+...++++.|.+.|+
T Consensus 13 ~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 13 MGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cchHHHHHHHHHHHhHCcC
Confidence 4678888888888888774
No 79
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=30.31 E-value=1.3e+02 Score=23.39 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=35.6
Q ss_pred EEEccCChhhH-HHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHH-HHHHHcCCCChhhcccceEEeCCHHHHH
Q 032073 42 VVALPGGVGTL-DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 119 (148)
Q Consensus 42 fI~lPGG~GTL-eElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l-~~m~~~Gfi~~~~~~~li~~~d~~ee~l 119 (148)
.|+|-||.||- ..+ ....+||++=++ | .|++++. +.+.+.|+ ++. .+......+++.
T Consensus 3 aiIla~G~g~Rl~pl------------t~~~pK~llpi~--g--~piI~~~l~~l~~~Gi---~~I--~iv~~~~~~~i~ 61 (217)
T cd04197 3 AVVLADSFNRRFRPL------------TKEKPRCLLPLA--N--VPLIDYTLEFLALNGV---EEV--FVFCCSHSDQIK 61 (217)
T ss_pred EEEEcCCCccccccc------------ccCCCceeeEEC--C--EehHHHHHHHHHHCCC---CeE--EEEeCCCHHHHH
Confidence 37888899983 211 111367766554 3 3666665 55777775 221 233334467777
Q ss_pred HHHHhh
Q 032073 120 SYLAEF 125 (148)
Q Consensus 120 ~~L~~~ 125 (148)
+++.+.
T Consensus 62 ~~l~~~ 67 (217)
T cd04197 62 EYIEKS 67 (217)
T ss_pred HHHhhc
Confidence 777664
No 80
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=30.04 E-value=3e+02 Score=22.24 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhhhc
Q 032073 114 SNSEALSYLAEFYD 127 (148)
Q Consensus 114 ~~ee~l~~L~~~~~ 127 (148)
|++++.+.|+....
T Consensus 310 ~~~~l~~~i~~ll~ 323 (350)
T cd03785 310 TPERLAAALLELLS 323 (350)
T ss_pred CHHHHHHHHHHHhc
Confidence 78888888877653
No 81
>cd05142 Barstar Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=30.03 E-value=1.2e+02 Score=21.13 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=27.1
Q ss_pred eeechHHHhHHHHHHhhhhcCCCCccEEEEccCChh-hHHHHHHHHH
Q 032073 15 VDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVG-TLDEMFEILA 60 (148)
Q Consensus 15 ~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~G-TLeElfEvlt 60 (148)
+.++.+..+...+...+ .+ .-+|+.+| .||=+.+.+|
T Consensus 4 iDg~~i~~~~~f~~~l~--------~~-~~~p~~~G~NlDAl~D~Lt 41 (87)
T cd05142 4 IDGEEIRSIEDLHQILK--------KE-LALPEYYGENLDALWDCLT 41 (87)
T ss_pred EECccCCCHHHHHHHHH--------HH-hCCchhcCCCHHHHHHHHc
Confidence 44556666666666665 44 48899988 8999999996
No 82
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=29.62 E-value=76 Score=26.08 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=26.2
Q ss_pred eeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 15 VDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 15 ~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~ 80 (148)
+++..+......++.. +|.+|. +|| +|+-|+.- . .+|++++-.
T Consensus 226 i~~~~~~~~m~~lm~~--------aDl~Is-~~G-~T~~E~~a---~----------g~P~i~i~~ 268 (279)
T TIGR03590 226 IILFIDVENMAELMNE--------ADLAIG-AAG-STSWERCC---L----------GLPSLAICL 268 (279)
T ss_pred EEEEeCHHHHHHHHHH--------CCEEEE-CCc-hHHHHHHH---c----------CCCEEEEEe
Confidence 4444555555455544 598888 666 88655432 1 479988864
No 83
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=29.56 E-value=3e+02 Score=23.71 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=40.2
Q ss_pred ccEEE-EccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc-chHHHHHHHHHHHHcCCCChhhcccceEEeCCHH
Q 032073 39 RTAVV-ALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS-FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 116 (148)
Q Consensus 39 sdAfI-~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g-fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~e 116 (148)
-|+++ .++||+.-.+++.+.+.-..- .++ ++||+++.- .| -.+...+. +.+.|+ -+.+.++++
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~-~~~--~~kPvvv~~-~g~~~~~~~~~---L~~~G~--------~ip~~~~~~ 375 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALK-EVG--VNVPVVVRL-EGTNVEEGKKI---LAESGL--------NIIFATSME 375 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH-hcC--CCCcEEEEe-CCccHHHHHHH---HHHcCC--------CccccCCHH
Confidence 35555 467898888888877765422 221 248995544 34 22333222 334453 134678999
Q ss_pred HHHHHHH
Q 032073 117 EALSYLA 123 (148)
Q Consensus 117 e~l~~L~ 123 (148)
++++..-
T Consensus 376 ~Av~~~~ 382 (386)
T TIGR01016 376 EAAEKAV 382 (386)
T ss_pred HHHHHHH
Confidence 9888764
No 84
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=29.53 E-value=89 Score=25.45 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=20.1
Q ss_pred CccEEEEccCChhhHHH------HHHHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 38 DRTAVVALPGGVGTLDE------MFEILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 38 esdAfI~lPGG~GTLeE------lfEvlt~~qlg~~~k~~~kPivlln~ 80 (148)
++|++|+-.|| .+.. +..-+.+..+.+. ..||+++++.
T Consensus 64 ~~D~vI~gGG~--l~~d~~~~~~~~~~~~~~~~a~~---~~k~~~~~g~ 107 (298)
T TIGR03609 64 RADVVIWGGGS--LLQDVTSFRSLLYYLGLMRLARL---FGKPVILWGQ 107 (298)
T ss_pred HCCEEEECCcc--cccCCcccccHHHHHHHHHHHHH---cCCCEEEEec
Confidence 46988764444 3322 2222223333332 3789999985
No 85
>PRK10122 GalU regulator GalF; Provisional
Probab=29.20 E-value=1.2e+02 Score=25.27 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=37.0
Q ss_pred EEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHH-HHHHHcCCCChhhcccceEEeCCHHHHHH
Q 032073 42 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 120 (148)
Q Consensus 42 fI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l-~~m~~~Gfi~~~~~~~li~~~d~~ee~l~ 120 (148)
.|++-||.|| .++-..+..|||++=++ | +|+++++ +.+.+.|. ++. .+......+++.+
T Consensus 6 avIlAaG~Gt-----------Rl~PlT~~~PK~llpi~--g--kpiI~~~l~~l~~~Gi---~~i--~iv~~~~~~~i~~ 65 (297)
T PRK10122 6 AVIPVAGLGM-----------HMLPATKAIPKEMLPIV--D--KPMIQYIVDEIVAAGI---KEI--VLVTHASKNAVEN 65 (297)
T ss_pred EEEECCcCCc-----------ccCcccCCCCceeeEEC--C--EEHHHHHHHHHHHCCC---CEE--EEEcCCChHHHHH
Confidence 4788999999 12111222478877665 3 4777776 55788785 222 3344455666666
Q ss_pred HHH
Q 032073 121 YLA 123 (148)
Q Consensus 121 ~L~ 123 (148)
++.
T Consensus 66 ~~~ 68 (297)
T PRK10122 66 HFD 68 (297)
T ss_pred HHh
Confidence 663
No 86
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=29.16 E-value=1.8e+02 Score=24.98 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=27.2
Q ss_pred cEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC---ccchHHHHHHHHHH
Q 032073 40 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY---DSFYKKLLDFLGDC 94 (148)
Q Consensus 40 dAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~---~gfwd~L~~~l~~m 94 (148)
=|+|+|-||.||= +|.. .+||++=++. .-+++-+.+.+..+
T Consensus 16 va~viLaGG~GTR-----------Lg~~---~PK~l~pv~~~~~k~ll~~~~e~l~~l 59 (323)
T cd04193 16 VAVLLLAGGQGTR-----------LGFD---GPKGMFPVGLPSKKSLFQLQAERILKL 59 (323)
T ss_pred EEEEEECCCcccc-----------cCCC---CCeEEEEecCCCCCcHHHHHHHHHHHH
Confidence 3799999999992 2332 3788776652 34777666666553
No 87
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=28.88 E-value=1e+02 Score=27.49 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=40.5
Q ss_pred CccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHcCCCChhhcccceEEeCCHHH
Q 032073 38 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 117 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee 117 (148)
++=+-|+|-||+|| .|.-..+..+||.|=++ =|.=+.-.+..++..|- ++ . .+...=.+++
T Consensus 8 ~~vkaiILvGG~GT-----------RLrPLT~t~pKPlVpfg---n~pmI~hqieal~nsGi-~~--I--~la~~y~s~s 68 (371)
T KOG1322|consen 8 QSVKAIILVGGYGT-----------RLRPLTLTRPKPLVPFG---NKPMILHQIEALINSGI-TK--I--VLATQYNSES 68 (371)
T ss_pred cceeEEEEecCCCc-----------eeeceeccCCCcccccC---cchhhHHHHHHHHhCCC-cE--E--EEEEecCcHH
Confidence 35678999999999 12222333588877554 34555566777888884 21 1 2222233444
Q ss_pred HHHHHHhhh
Q 032073 118 ALSYLAEFY 126 (148)
Q Consensus 118 ~l~~L~~~~ 126 (148)
+...+.+.|
T Consensus 69 l~~~~~k~y 77 (371)
T KOG1322|consen 69 LNRHLSKAY 77 (371)
T ss_pred HHHHHHHHh
Confidence 555554444
No 88
>PF03454 MoeA_C: MoeA C-terminal region (domain IV); InterPro: IPR005111 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this domain is uncertain. The structure of this domain is known [] and forms an incomplete beta barrel.; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1T3E_A 2FU3_A 2FTS_A 1WU2_A 1XI8_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A 2NQM_B ....
Probab=28.69 E-value=6.7 Score=25.45 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=11.5
Q ss_pred CccEEEEccCChhhH
Q 032073 38 DRTAVVALPGGVGTL 52 (148)
Q Consensus 38 esdAfI~lPGG~GTL 52 (148)
++||++++|.|...+
T Consensus 47 ~an~l~~ip~~~~~~ 61 (72)
T PF03454_consen 47 RANGLIVIPEGVEGL 61 (72)
T ss_dssp HBSEEEEEETT-SEE
T ss_pred hCCEEEEeCCCCCcc
Confidence 469999999997653
No 89
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=28.55 E-value=99 Score=27.12 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=28.6
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~ 80 (148)
.|++|+.=| .=||||-.-.+.++-- .+|||||.+-
T Consensus 101 ~dGvVItHG-TDTmeeTA~~L~l~l~------~~kPVVlTGa 135 (351)
T COG0252 101 VDGVVITHG-TDTMEETAFFLSLTLN------TPKPVVLTGA 135 (351)
T ss_pred CCeEEEeCC-CchHHHHHHHHHHHhc------CCCCEEEeCC
Confidence 389999875 6899999999988743 3799999974
No 90
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=28.42 E-value=1.4e+02 Score=26.03 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=34.7
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccc-hHHHHHHHHHHHHcCCCCh
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF-YKKLLDFLGDCEDWGTVAK 102 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gf-wd~L~~~l~~m~~~Gfi~~ 102 (148)
+|+||+---.+.-+-|- ..+ .||+.++-.++| =..+.-|++++.+++..++
T Consensus 245 Adyii~TaDSinM~sEA------asT-------gkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~ 296 (329)
T COG3660 245 ADYIISTADSINMCSEA------AST-------GKPVFILEPPNFNSLKFRIFIEQLVEQKIARP 296 (329)
T ss_pred cceEEEecchhhhhHHH------hcc-------CCCeEEEecCCcchHHHHHHHHHHHHhhhccc
Confidence 39999966655444332 222 579999988888 6677777888887665443
No 91
>PRK10200 putative racemase; Provisional
Probab=28.20 E-value=2.5e+02 Score=22.59 Aligned_cols=22 Identities=0% Similarity=-0.052 Sum_probs=17.0
Q ss_pred ccceEEeCCHHHHHHHHHhhhc
Q 032073 106 ASLWKICDSNSEALSYLAEFYD 127 (148)
Q Consensus 106 ~~li~~~d~~ee~l~~L~~~~~ 127 (148)
+-++.-|+++--.++.+++.++
T Consensus 77 ~~iviaCNTah~~~~~l~~~~~ 98 (230)
T PRK10200 77 EGIVLCTNTMHKVADAIESRCS 98 (230)
T ss_pred CEEEECCchHHHHHHHHHHhCC
Confidence 3467788999999888887654
No 92
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=28.16 E-value=1.2e+02 Score=25.40 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=37.7
Q ss_pred EEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHH-HHHHHcCCCChhhcccceEEeCCHHHHHH
Q 032073 42 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 120 (148)
Q Consensus 42 fI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l-~~m~~~Gfi~~~~~~~li~~~d~~ee~l~ 120 (148)
.|+|-||.|| .+.-+.+..|||++=++. .|+++++ +.+.+.|. ++ -.+.+....+++.+
T Consensus 6 avILAaG~GT-----------RL~PlT~~~PKpLvpV~g----kPiI~~vl~~l~~~Gi---~~--ivivv~~~~~~i~~ 65 (297)
T TIGR01105 6 AVIPVAGLGM-----------HMLPATKAIPKEMLPIVD----KPMIQYIVDEIVAAGI---KE--IVLVTHASKNAVEN 65 (297)
T ss_pred EEEECCCCCc-----------ccCcccCCCCceeeEECC----EEHHHHHHHHHHHCCC---CE--EEEEecCChHHHHH
Confidence 5888999999 121111224888877763 5676665 55777774 22 23445566666666
Q ss_pred HHH
Q 032073 121 YLA 123 (148)
Q Consensus 121 ~L~ 123 (148)
++.
T Consensus 66 ~~~ 68 (297)
T TIGR01105 66 HFD 68 (297)
T ss_pred HHh
Confidence 664
No 93
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=27.80 E-value=1.9e+02 Score=23.53 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=23.9
Q ss_pred CCcEEEEeCccchHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhhhc
Q 032073 72 PVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 127 (148)
Q Consensus 72 ~kPivlln~~gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~~~ 127 (148)
.+|++.++..+-+. ..++.|. .+.+.++++++.+.+.+...
T Consensus 296 g~PvI~~~~~~~~~-------~~~~~g~--------~~~~~~~~~~i~~~i~~ll~ 336 (363)
T cd03786 296 GVPVLNLRDRTERP-------ETVESGT--------NVLVGTDPEAILAAIEKLLS 336 (363)
T ss_pred CCCEEeeCCCCccc-------hhhheee--------EEecCCCHHHHHHHHHHHhc
Confidence 57999987422222 2233342 12233578999999988765
No 94
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=27.44 E-value=1.2e+02 Score=23.10 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=32.8
Q ss_pred EEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHH-HHHHHcCCCChhhcccceEEeCCHHHHHHH
Q 032073 43 VALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSY 121 (148)
Q Consensus 43 I~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l-~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~ 121 (148)
|+|-||.||-= +. ..+||++-++ | +||+++. +.+.+.|. . +. .+.+..+.+++.+.
T Consensus 2 iIlaaG~g~R~-----------~~---~~pK~l~~v~--g--kpli~~~i~~l~~~~i-~--~i--~iv~~~~~~~i~~~ 58 (229)
T cd02540 2 VILAAGKGTRM-----------KS---DLPKVLHPLA--G--KPMLEHVLDAARALGP-D--RI--VVVVGHGAEQVKKA 58 (229)
T ss_pred EEEeCCCCccC-----------CC---CCChhcceeC--C--ccHHHHHHHHHHhCCC-C--eE--EEEECCCHHHHHHH
Confidence 78889999841 11 1378888776 3 4776654 44666663 1 11 33344455555555
Q ss_pred HH
Q 032073 122 LA 123 (148)
Q Consensus 122 L~ 123 (148)
+.
T Consensus 59 ~~ 60 (229)
T cd02540 59 LA 60 (229)
T ss_pred hC
Confidence 54
No 95
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=27.36 E-value=29 Score=23.96 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=17.7
Q ss_pred EEccCChhhHHHHHHHHHHHhh
Q 032073 43 VALPGGVGTLDEMFEILALIQL 64 (148)
Q Consensus 43 I~lPGG~GTLeElfEvlt~~ql 64 (148)
+.-|+|. |++|+.+...|.+.
T Consensus 19 L~rp~GA-Ti~ei~~atGWq~H 39 (72)
T PF11994_consen 19 LRRPEGA-TIAEICEATGWQPH 39 (72)
T ss_pred HcCCCCC-CHHHHHHhhCCchh
Confidence 3458887 99999999999875
No 96
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=27.22 E-value=2.2e+02 Score=23.84 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=36.8
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHH
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 118 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~ 118 (148)
+|+|| --||.||+-|... ..+|++++-. +.|.. ...+.+.+.|.... + +. -.-+++++
T Consensus 305 ~d~~I-~hgG~~t~~eal~-------------~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~--l-~~--~~~~~~~l 362 (401)
T cd03784 305 CAAVV-HHGGAGTTAAALR-------------AGVPQLVVPF--FGDQP-FWAARVAELGAGPA--L-DP--RELTAERL 362 (401)
T ss_pred hheee-ecCCchhHHHHHH-------------cCCCEEeeCC--CCCcH-HHHHHHHHCCCCCC--C-Cc--ccCCHHHH
Confidence 37666 6777899766532 2589999953 34432 23455667674221 1 00 01266777
Q ss_pred HHHHHhhh
Q 032073 119 LSYLAEFY 126 (148)
Q Consensus 119 l~~L~~~~ 126 (148)
.+.+++..
T Consensus 363 ~~al~~~l 370 (401)
T cd03784 363 AAALRRLL 370 (401)
T ss_pred HHHHHHHh
Confidence 66665543
No 97
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=27.18 E-value=1.2e+02 Score=17.93 Aligned_cols=15 Identities=47% Similarity=0.831 Sum_probs=10.6
Q ss_pred EEEEccCChhhHHHH
Q 032073 41 AVVALPGGVGTLDEM 55 (148)
Q Consensus 41 AfI~lPGG~GTLeEl 55 (148)
..|++|||.++....
T Consensus 48 ~~lii~g~~~~~~~~ 62 (92)
T cd03128 48 DGLILPGGPGTPDDL 62 (92)
T ss_pred CEEEECCCCcchhhh
Confidence 467788887777554
No 98
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=26.79 E-value=2.1e+02 Score=24.08 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=41.8
Q ss_pred HHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHH-cCC
Q 032073 21 SARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED-WGT 99 (148)
Q Consensus 21 ~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~-~Gf 99 (148)
.+|-+-|.+.- . -.+.||+++.=||+|+. ++.+-+.+.++..+ +|++ ++ | .++-.+.-.+.. .|+
T Consensus 52 ~~Ra~dL~~a~-~--Dp~i~aI~~~rGG~g~~-rlL~~lD~~~i~~~----PK~f--iG---y-SDiTaL~~al~~~~g~ 117 (308)
T cd07062 52 EERAEELMAAF-A--DPSIKAIIPTIGGDDSN-ELLPYLDYELIKKN----PKIF--IG---Y-SDITALHLAIYKKTGL 117 (308)
T ss_pred HHHHHHHHHHh-c--CCCCCEEEECCcccCHh-hhhhhcCHHHHhhC----CCEE--Ee---c-cHHHHHHHHHHHhcCC
Confidence 67777777643 1 12348999999999985 57777788877543 5654 43 4 444444434433 366
Q ss_pred CC
Q 032073 100 VA 101 (148)
Q Consensus 100 i~ 101 (148)
++
T Consensus 118 ~t 119 (308)
T cd07062 118 VT 119 (308)
T ss_pred eE
Confidence 54
No 99
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=26.78 E-value=1.1e+02 Score=23.64 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=22.2
Q ss_pred CccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 38 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~ 80 (148)
..||+|+.|....++++..+.+. + .+.|++++|.
T Consensus 60 ~vdgiIi~~~~~~~~~~~l~~~~--~-------~~iPvv~~~~ 93 (272)
T cd06300 60 GVDAIIINPASPTALNPVIEEAC--E-------AGIPVVSFDG 93 (272)
T ss_pred CCCEEEEeCCChhhhHHHHHHHH--H-------CCCeEEEEec
Confidence 46999999987665565544331 1 1568888873
No 100
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=26.70 E-value=1.9e+02 Score=20.87 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=20.9
Q ss_pred CccEEEEccCChhhHHHHH---HHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 38 DRTAVVALPGGVGTLDEMF---EILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElf---Evlt~~qlg~~~k~~~kPivlln~ 80 (148)
+.|++ +.|||.+..+++. ++..|.+--.- +.++|+-+..
T Consensus 60 ~~D~l-iipGg~~~~~~~~~~~~l~~~l~~~~~---~~~~i~~ic~ 101 (163)
T cd03135 60 DYDAI-VIPGGLPGAQNLADNEKLIKLLKEFNA---KGKLIAAICA 101 (163)
T ss_pred CCCEE-EECCCCchHHHHHhCHHHHHHHHHHHH---cCCEEEEEch
Confidence 45764 5699985444332 34444432221 3678876664
No 101
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=26.48 E-value=96 Score=23.66 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=9.3
Q ss_pred cEEEEccCChhhHHHH
Q 032073 40 TAVVALPGGVGTLDEM 55 (148)
Q Consensus 40 dAfI~lPGG~GTLeEl 55 (148)
|+ |+++||.|+.++.
T Consensus 41 dg-iil~GG~~~~~~~ 55 (178)
T cd01744 41 DG-IFLSNGPGDPALL 55 (178)
T ss_pred CE-EEECCCCCChhHh
Confidence 66 4566777766553
No 102
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=26.33 E-value=1.8e+02 Score=24.94 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=23.5
Q ss_pred CCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCc
Q 032073 37 CDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 81 (148)
Q Consensus 37 ~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~ 81 (148)
.|+|+|++|- |--+++.-+....... ..++||.++|+.
T Consensus 245 ~e~dg~LvlG----sSL~v~Sg~r~i~~a~---~~k~pi~IvNIG 282 (305)
T KOG2683|consen 245 KECDGFLVLG----SSLMVLSGFRFIRHAH---EKKKPIAIVNIG 282 (305)
T ss_pred hccCceEEec----hhHHHHHHHHHHHHHH---hhcCcEEEEecC
Confidence 4789999984 4333333333332222 247999999984
No 103
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=26.13 E-value=2e+02 Score=25.37 Aligned_cols=53 Identities=17% Similarity=0.346 Sum_probs=38.4
Q ss_pred CCcEEEEeCccchHHHHHHHHHHHH-cCCCC-------------hhhc-ccceEEeCCHHHHHHHHHhhhcc
Q 032073 72 PVPFLVMNYDSFYKKLLDFLGDCED-WGTVA-------------KDEV-ASLWKICDSNSEALSYLAEFYDL 128 (148)
Q Consensus 72 ~kPivlln~~gfwd~L~~~l~~m~~-~Gfi~-------------~~~~-~~li~~~d~~ee~l~~L~~~~~~ 128 (148)
++-|++++++ +.|++|++..++ .|. + ++++ +..=.|..||.|.+..++.|..+
T Consensus 175 pk~iaVvDID---ERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~alk~FlgR 242 (354)
T COG1568 175 PKRIAVVDID---ERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDPPETIKALKLFLGR 242 (354)
T ss_pred CceEEEEech---HHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeeecCchhhHHHHHHHHhc
Confidence 7899999998 899999988655 443 2 1111 12226889999999999988654
No 104
>TIGR00035 asp_race aspartate racemase.
Probab=26.13 E-value=2.8e+02 Score=22.01 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=39.0
Q ss_pred ccCChhhHH--HHHHHHHH---HhhhhhcCCCCCcEEEEeCc-----------cchHHHHHHHHHHHHcCCCChhhcccc
Q 032073 45 LPGGVGTLD--EMFEILAL---IQLERIGSELPVPFLVMNYD-----------SFYKKLLDFLGDCEDWGTVAKDEVASL 108 (148)
Q Consensus 45 lPGG~GTLe--ElfEvlt~---~qlg~~~k~~~kPivlln~~-----------gfwd~L~~~l~~m~~~Gfi~~~~~~~l 108 (148)
.=||.|.+- ++++-+.. .+.+++ ..|++++|.- +=|+.+...+.++++. +.+...+-+
T Consensus 6 iiGGmgp~at~~~~~~i~~~~~a~~d~~----~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~--L~~~g~d~i 79 (229)
T TIGR00035 6 ILGGMGPLATAELFRRINEKTKAKRDQE----HPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVK--LENAGADFI 79 (229)
T ss_pred EecCcCHHHHHHHHHHHHHHhHHhcCCC----CCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHH--HHHcCCCEE
Confidence 348888764 44443332 233332 3566666542 2244344444333221 111122346
Q ss_pred eEEeCCHHHHHHHHHhhhc
Q 032073 109 WKICDSNSEALSYLAEFYD 127 (148)
Q Consensus 109 i~~~d~~ee~l~~L~~~~~ 127 (148)
+.-|+++.-.++.+++..+
T Consensus 80 viaCNTah~~~~~l~~~~~ 98 (229)
T TIGR00035 80 IMPCNTAHKFAEDIQKAIG 98 (229)
T ss_pred EECCccHHHHHHHHHHhCC
Confidence 6778888888888877543
No 105
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=26.00 E-value=4.5e+02 Score=23.06 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=40.4
Q ss_pred ccEEE-EccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc-chHHHHHHHHHHHHcCCCChhhcccceEEeCCHH
Q 032073 39 RTAVV-ALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS-FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 116 (148)
Q Consensus 39 sdAfI-~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g-fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~e 116 (148)
.|+++ .++||+.-.+++.+.+.-..- .++ .+||+++ ...| -.+... +.+.+.|+ .+..++|.+
T Consensus 311 VdaVlv~i~ggi~~~~~vA~~Ii~a~~-~~~--~~kPvvv-~l~G~~~e~~~---~iL~~~Gi--------pvf~~~~~~ 375 (392)
T PRK14046 311 VKAILVNIFAGINRCDWVAEGVVQAAR-EVG--IDVPLVV-RLAGTNVEEGR---KILAESGL--------PIITADTLA 375 (392)
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHH-hcC--CCCcEEE-EcCCCCHHHHH---HHHHHcCC--------CeeecCCHH
Confidence 35555 457887777888877765422 111 3689944 4444 222222 22344453 245778999
Q ss_pred HHHHHHHh
Q 032073 117 EALSYLAE 124 (148)
Q Consensus 117 e~l~~L~~ 124 (148)
|+++..-.
T Consensus 376 ~a~~~~v~ 383 (392)
T PRK14046 376 EAAEKAVE 383 (392)
T ss_pred HHHHHHHH
Confidence 99887654
No 106
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=25.50 E-value=1.1e+02 Score=25.47 Aligned_cols=46 Identities=13% Similarity=0.358 Sum_probs=32.5
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHH
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 93 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~ 93 (148)
.+.++++||- +-+|..+++.-.-.+ ++|.+++ .||-|..-.++++.
T Consensus 103 ~~p~lvfP~e--~a~e~t~v~~~~p~~------k~plfIl-lDgTW~eArKMfrk 148 (231)
T COG3148 103 YQPYLVFPAE--YAEELTEVISTAPAE------KPPLFIL-LDGTWREARKMFRK 148 (231)
T ss_pred CceEEEcchH--HHHHHHHHhhccccc------CCceEEE-ecCccHHHHHHHhc
Confidence 4799999997 788888888554331 2345444 47999998877653
No 107
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.46 E-value=2.7e+02 Score=21.51 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=29.3
Q ss_pred CccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCc----------cchHHHHHHHHHHHHcC
Q 032073 38 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD----------SFYKKLLDFLGDCEDWG 98 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~----------gfwd~L~~~l~~m~~~G 98 (148)
..||+|+.|+..-+ +++.+.+ .. .++|+|++|.. +++..-....+++.+.|
T Consensus 55 ~vdgii~~~~~~~~-~~~~~~~-----~~----~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G 115 (269)
T cd06281 55 RMDGIIIAPGDERD-PELVDAL-----AS----LDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISLG 115 (269)
T ss_pred CCCEEEEecCCCCc-HHHHHHH-----Hh----CCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHHCC
Confidence 35999999874322 3333322 11 25788888631 34445555566777776
No 108
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=25.29 E-value=98 Score=24.77 Aligned_cols=13 Identities=46% Similarity=0.631 Sum_probs=9.7
Q ss_pred EEEccCChhhHHH
Q 032073 42 VVALPGGVGTLDE 54 (148)
Q Consensus 42 fI~lPGG~GTLeE 54 (148)
.|++|||+++-++
T Consensus 44 ~lvipGG~~~~d~ 56 (219)
T PRK03619 44 AVVLPGGFSYGDY 56 (219)
T ss_pred EEEECCCCchhhh
Confidence 7889999876543
No 109
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=25.25 E-value=1.6e+02 Score=22.89 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=13.9
Q ss_pred CccEEEEccCChhhHHHHHH
Q 032073 38 DRTAVVALPGGVGTLDEMFE 57 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfE 57 (148)
+.|+ |++|||.-+.+++..
T Consensus 37 ~~d~-lilpGg~~~~~~~~~ 55 (194)
T cd01750 37 DADL-IILPGSKDTIQDLAW 55 (194)
T ss_pred CCCE-EEECCCcchHHHHHH
Confidence 4575 779999988776544
No 110
>PLN02327 CTP synthase
Probab=24.26 E-value=68 Score=30.05 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=19.6
Q ss_pred CccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEE
Q 032073 38 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 76 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPiv 76 (148)
+.|++ ++|||+|+-..--.+........ .++|+.
T Consensus 362 ~~DGI-vvpGGfG~~~~~G~i~ai~~are----~~iP~L 395 (557)
T PLN02327 362 GADGI-LVPGGFGDRGVEGKILAAKYARE----NKVPYL 395 (557)
T ss_pred cCCEE-EeCCCCCCcccccHHHHHHHHHH----cCCCEE
Confidence 45765 89999987554444433332222 367853
No 111
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=23.79 E-value=1.3e+02 Score=23.32 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=21.9
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~ 80 (148)
.||+|+.|....++++..+.+. . ...|++++|.
T Consensus 58 vdgiIi~~~~~~~~~~~~~~~~-----~----~~iPvV~~~~ 90 (275)
T cd06320 58 YKGLLFSPISDVNLVPAVERAK-----K----KGIPVVNVND 90 (275)
T ss_pred CCEEEECCCChHHhHHHHHHHH-----H----CCCeEEEECC
Confidence 5999999876666666544332 1 1568888864
No 112
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=23.58 E-value=94 Score=25.60 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=25.9
Q ss_pred EEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC---ccchHH
Q 032073 42 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY---DSFYKK 86 (148)
Q Consensus 42 fI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~---~gfwd~ 86 (148)
.|+.=||=||+.|+..-+.-. +. + .+.|++++-. |+|-+.
T Consensus 55 ~vv~~GGDGTi~ev~ngl~~~--~~-~--~~~~lgiiP~GTgNdfAr~ 97 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALAQI--RD-D--AAPALGLLPLGTANDFATA 97 (293)
T ss_pred EEEEEcCChHHHHHHHHHHhh--CC-C--CCCcEEEEcCCchhHHHHh
Confidence 677889999999999877322 11 1 2457888743 345553
No 113
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=23.57 E-value=30 Score=19.94 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCChhhcccceEEe-CCHHHHHHHH
Q 032073 90 FLGDCEDWGTVAKDEVASLWKIC-DSNSEALSYL 122 (148)
Q Consensus 90 ~l~~m~~~Gfi~~~~~~~li~~~-d~~ee~l~~L 122 (148)
.++.+.+.||-.. ..+..+..+ .+++.++++|
T Consensus 5 ~v~~L~~mGf~~~-~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 5 KVQQLMEMGFSRE-QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTS-HH-HHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHcCCCHH-HHHHHHHHcCCCHHHHHHhC
Confidence 3555666698554 333333333 4788877765
No 114
>PRK13059 putative lipid kinase; Reviewed
Probab=23.18 E-value=94 Score=25.75 Aligned_cols=31 Identities=23% Similarity=0.585 Sum_probs=22.2
Q ss_pred EEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEe
Q 032073 42 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 79 (148)
Q Consensus 42 fI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln 79 (148)
.|+.=||=||+.|+...+. +.+ .+.|++++-
T Consensus 59 ~vi~~GGDGTv~evv~gl~--~~~-----~~~~lgviP 89 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMK--KLN-----IDLPIGILP 89 (295)
T ss_pred EEEEECCccHHHHHHHHHH--hcC-----CCCcEEEEC
Confidence 5667799999999987763 221 246888874
No 115
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=23.09 E-value=1.3e+02 Score=22.89 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=24.0
Q ss_pred CccEEEEccCChhhHHHHH---HHHHHHhhhhhcCCCCCcEEEEeCccch
Q 032073 38 DRTAVVALPGGVGTLDEMF---EILALIQLERIGSELPVPFLVMNYDSFY 84 (148)
Q Consensus 38 esdAfI~lPGG~GTLeElf---Evlt~~qlg~~~k~~~kPivlln~~gfw 84 (148)
+.|+ |++|||.+....+. ++..|.+--. . ..++|+-+....|+
T Consensus 66 ~~D~-l~ipGG~~~~~~~~~~~~l~~~L~~~~-~--~g~~v~aic~G~~~ 111 (196)
T PRK11574 66 DFDV-IVLPGGIKGAECFRDSPLLVETVRQFH-R--SGRIVAAICAAPAT 111 (196)
T ss_pred CCCE-EEECCCCchhhhhhhCHHHHHHHHHHH-H--CCCEEEEECHhHHH
Confidence 3465 56799976544322 3555554322 1 36888877654344
No 116
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.02 E-value=2.8e+02 Score=22.46 Aligned_cols=41 Identities=29% Similarity=0.631 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHH-----HHHHHHHHHHcCC
Q 032073 51 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK-----LLDFLGDCEDWGT 99 (148)
Q Consensus 51 TLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~-----L~~~l~~m~~~Gf 99 (148)
|++..++++.... .. .+.|++++- ||++ +.+|++.+.+.|.
T Consensus 60 ~~~~~~~~~~~vr--~~---~~~pv~lm~---y~n~~~~~G~~~fi~~~~~aG~ 105 (242)
T cd04724 60 TLKDVLELVKEIR--KK---NTIPIVLMG---YYNPILQYGLERFLRDAKEAGV 105 (242)
T ss_pred CHHHHHHHHHHHh--hc---CCCCEEEEE---ecCHHHHhCHHHHHHHHHHCCC
Confidence 4455666664432 21 257988753 5555 6777888888774
No 117
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=22.61 E-value=1e+02 Score=29.95 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=47.7
Q ss_pred eeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhH----HHHHHHHHHHhhhhhcCCCCCcEEE--------EeCc
Q 032073 14 LVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL----DEMFEILALIQLERIGSELPVPFLV--------MNYD 81 (148)
Q Consensus 14 ~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTL----eElfEvlt~~qlg~~~k~~~kPivl--------ln~~ 81 (148)
.++++.||-|-..|. |=.||+ +||.+++.+--+- +. .+||+.- .+..
T Consensus 330 ~It~qn~Fr~Y~kl~------------------GmTGTa~te~~E~~~iY~l~vv~-IP--tnkp~~R~d~~d~i~~t~~ 388 (745)
T TIGR00963 330 TITYQNFFRLYEKLS------------------GMTGTAKTEEEEFEKIYNLEVVV-VP--TNRPVIRKDLSDLVYKTEE 388 (745)
T ss_pred eeeHHHHHhhCchhh------------------ccCCCcHHHHHHHHHHhCCCEEE-eC--CCCCeeeeeCCCeEEcCHH
Confidence 467777777665432 445555 6666666554321 22 2455433 3334
Q ss_pred cchHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhh
Q 032073 82 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 125 (148)
Q Consensus 82 gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~ 125 (148)
.-|+.+.+-+..+.+.| +..+++|.+.++. +.+.+.
T Consensus 389 ~k~~ai~~~i~~~~~~g-------rpvLV~t~si~~s-e~ls~~ 424 (745)
T TIGR00963 389 EKWKAVVDEIKERHAKG-------QPVLVGTTSVEKS-ELLSNL 424 (745)
T ss_pred HHHHHHHHHHHHHHhcC-------CCEEEEeCcHHHH-HHHHHH
Confidence 56777777777776665 2356788888773 444433
No 118
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=22.49 E-value=50 Score=31.38 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=30.5
Q ss_pred CHHHHHHHHHhhhccCCccccccccccccccC
Q 032073 114 SNSEALSYLAEFYDLSSIDKRVHEVNLKSTHG 145 (148)
Q Consensus 114 ~~ee~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 145 (148)
+++++.++++.|+.+...+.||++.+-+++|-
T Consensus 627 ~~~~i~~~~~~F~~~f~~nq~Kr~~~~p~~~~ 658 (700)
T PLN02339 627 SPSEVAAKVKDFFKYYSINRHKMTTLTPSYHA 658 (700)
T ss_pred CHHHHHHHHHHHHHHHHHhhccccccCCcccc
Confidence 89999999999999999999999999999984
No 119
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.46 E-value=3e+02 Score=25.38 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHcCCCChhhcccc------------eEEeCCHHHHHHHH
Q 032073 55 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASL------------WKICDSNSEALSYL 122 (148)
Q Consensus 55 lfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~Gfi~~~~~~~l------------i~~~d~~ee~l~~L 122 (148)
.-|.+|..|.+ .+.-++++| |+.|.-+..+-+......+ +..+.... -..+++++|+-+.|
T Consensus 442 ~qEL~Ta~r~~-----lpv~ivv~n-N~~~g~v~~~q~~~~~~~~-~~~~~~~~~f~klAea~G~~g~~v~~~~el~~al 514 (550)
T COG0028 442 GQELETAVRYG-----LPVKIVVLN-NGGYGMVRQWQELFYGGRY-SGTDLGNPDFVKLAEAYGAKGIRVETPEELEEAL 514 (550)
T ss_pred HHHHHHHHHhC-----CCEEEEEEE-CCccccchHHHHHhcCCCc-ceeecCCccHHHHHHHcCCeeEEeCCHHHHHHHH
Confidence 56667776663 266777788 5777766666544433320 00111111 14567999999999
Q ss_pred HhhhccCCc
Q 032073 123 AEFYDLSSI 131 (148)
Q Consensus 123 ~~~~~~~~~ 131 (148)
++......+
T Consensus 515 ~~al~~~~p 523 (550)
T COG0028 515 EEALASDGP 523 (550)
T ss_pred HHHHhCCCC
Confidence 988765444
No 120
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]
Probab=22.38 E-value=1.3e+02 Score=31.05 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=24.3
Q ss_pred EEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEE
Q 032073 41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 78 (148)
Q Consensus 41 AfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivll 78 (148)
-||.|||- |.+|-|+|=.-+--.... .+|+||.|=
T Consensus 1139 mFVlL~Ga--T~eeAF~IGq~iAe~VT~-~NP~PV~LK 1173 (1488)
T KOG0968|consen 1139 MFVLLPGA--TVEEAFEIGQEIAEAVTN-SNPKPVVLK 1173 (1488)
T ss_pred eEEEecCc--cHHHHHHHHHHHHHHHHh-cCCCCeEEE
Confidence 79999998 999999875444322222 258888764
No 121
>PLN02164 sulfotransferase
Probab=21.85 E-value=1.2e+02 Score=26.41 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=36.5
Q ss_pred cCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHcC----CCChhhcccceEEeCCHHHHHHH
Q 032073 46 PGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWG----TVAKDEVASLWKICDSNSEALSY 121 (148)
Q Consensus 46 PGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~G----fi~~~~~~~li~~~d~~ee~l~~ 121 (148)
++-.||+||+|+.+.-. . . .+ ..||+++..|.+...+.. |++-+| + ..|+...++.
T Consensus 193 ~~~~~s~ee~~e~f~~g---~------~---~~--G~y~dHv~~yw~~~~~~p~~VLfl~YED---m---k~D~~~~v~r 252 (346)
T PLN02164 193 QGPLNSLEESFDMFCRG---L------S---VY--GPYLDHVLGYWKAYQENPDRILFLKYET---M---RADPLPYVKR 252 (346)
T ss_pred CCCCCCHHHHHHHHHcC---C------C---CC--CcHHHHHHHHHHHhhcCCccEEEEEHHH---H---HHhHHHHHHH
Confidence 44458999999987431 1 1 12 358888888776542211 222222 1 2466666666
Q ss_pred HHhhhccCCc
Q 032073 122 LAEFYDLSSI 131 (148)
Q Consensus 122 L~~~~~~~~~ 131 (148)
|.+|...+.+
T Consensus 253 ia~FLG~~~s 262 (346)
T PLN02164 253 LAEFMGYGFT 262 (346)
T ss_pred HHHHhCCCCc
Confidence 6666654333
No 122
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=21.81 E-value=2.4e+02 Score=23.76 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=34.1
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC-----------ccchHHHHHHHHHHHHcCC
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----------DSFYKKLLDFLGDCEDWGT 99 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~-----------~gfwd~L~~~l~~m~~~Gf 99 (148)
.||+|++| ...-+.+.+.+.-. ..|+|+++- .+.+.......+++++.|.
T Consensus 115 vdGiIi~~--~~~~~~~~~~l~~~---------~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~ 175 (333)
T COG1609 115 VDGLILLG--ERPNDSLLELLAAA---------GIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGH 175 (333)
T ss_pred CCEEEEec--CCCCHHHHHHHHhc---------CCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCCC
Confidence 59999999 55555555555332 468888774 1245677777888999883
No 123
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=21.28 E-value=60 Score=27.11 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=36.7
Q ss_pred HHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHc-CC
Q 032073 21 SARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDW-GT 99 (148)
Q Consensus 21 ~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~-Gf 99 (148)
.+|.+-|.+.- .. .+.||++++-||+|+. ++.+-+-|..+.++ +|+ +++ | .++-.++..+.+. |.
T Consensus 48 ~~Ra~dL~~a~-~d--~~i~aI~~~rGGyg~~-rlL~~ld~~~i~~~----pK~--~iG---y-SDiTaL~~al~~~~g~ 113 (284)
T PF02016_consen 48 EERAEDLNEAF-AD--PEIDAIWCARGGYGAN-RLLPYLDYDAIRKN----PKI--FIG---Y-SDITALHNALYAKTGL 113 (284)
T ss_dssp HHHHHHHHHHH-HS--TTEEEEEES--SS-GG-GGGGGCHHHHHHHS----G-E--EEE-----GGGHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHh-cC--CCCCEEEEeeccccHH-HHHhcccccccccC----CCE--EEE---e-cchHHHHHHHHHhCCC
Confidence 57777776643 21 3458999999999995 57777777777553 454 454 3 3444444444333 65
Q ss_pred C
Q 032073 100 V 100 (148)
Q Consensus 100 i 100 (148)
+
T Consensus 114 ~ 114 (284)
T PF02016_consen 114 V 114 (284)
T ss_dssp E
T ss_pred e
Confidence 4
No 124
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.05 E-value=80 Score=28.76 Aligned_cols=81 Identities=22% Similarity=0.387 Sum_probs=50.1
Q ss_pred hcCCCCccEEEEccCChhhHHHHH----HHHHHHhhhhhcCCCCCcEEEEeCccchH--HHHHHHHHHHHcCCCChhhcc
Q 032073 33 RNDSCDRTAVVALPGGVGTLDEMF----EILALIQLERIGSELPVPFLVMNYDSFYK--KLLDFLGDCEDWGTVAKDEVA 106 (148)
Q Consensus 33 ~~~~~esdAfI~lPGG~GTLeElf----Evlt~~qlg~~~k~~~kPivlln~~gfwd--~L~~~l~~m~~~Gfi~~~~~~ 106 (148)
.|..++.|++|+.-|| |.+|+|. |.+.-.-. . .+.|||=- + |+=. .|.+| ..+----+|....
T Consensus 188 an~~~~~DvlIVaRGG-GSiEDLW~FNdE~vaRAi~---~--s~iPvISA-V-GHEtD~tL~Df---VAD~RApTPTaAA 256 (440)
T COG1570 188 ANQRGDVDVLIVARGG-GSIEDLWAFNDEIVARAIA---A--SRIPVISA-V-GHETDFTLADF---VADLRAPTPTAAA 256 (440)
T ss_pred hhccCCCCEEEEecCc-chHHHHhccChHHHHHHHH---h--CCCCeEee-c-ccCCCccHHHh---hhhccCCCchHHH
Confidence 3668889999999999 9999986 44443322 1 36898643 2 2211 34443 3444444555544
Q ss_pred cceEEeCCHHHHHHHHHhhh
Q 032073 107 SLWKICDSNSEALSYLAEFY 126 (148)
Q Consensus 107 ~li~~~d~~ee~l~~L~~~~ 126 (148)
++ ++.+..|+.+.|..+.
T Consensus 257 E~--~vP~~~el~~~l~~~~ 274 (440)
T COG1570 257 EL--VVPDSAELLQQLDQLQ 274 (440)
T ss_pred HH--hCCCHHHHHHHHHHHH
Confidence 44 5678888888887653
No 125
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=20.97 E-value=2.9e+02 Score=26.58 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=48.4
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC------ccchHHHHHHHHHHHHcCCCChhhcccceEEe
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY------DSFYKKLLDFLGDCEDWGTVAKDEVASLWKIC 112 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~------~gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~ 112 (148)
-|.+||-|| -|.|+.+--.. .+|.. ...-+.+++- +|+|+.|-.+|+.+.++-.=.+ +..++|+
T Consensus 314 p~IVVATPG---Rlweli~e~n~-~l~~~---k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~q---rQTlVFS 383 (731)
T KOG0347|consen 314 PDIVVATPG---RLWELIEEDNT-HLGNF---KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQ---RQTLVFS 383 (731)
T ss_pred CCEEEecch---HHHHHHHhhhh-hhhhh---hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccc---cceEEEE
Confidence 399999998 45665554333 45555 2466777764 7899999999998876554222 3466788
Q ss_pred CCHHHHHH
Q 032073 113 DSNSEALS 120 (148)
Q Consensus 113 d~~ee~l~ 120 (148)
.+...+.+
T Consensus 384 ATlt~~~~ 391 (731)
T KOG0347|consen 384 ATLTLVLQ 391 (731)
T ss_pred EEeehhhc
Confidence 77766554
No 126
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.89 E-value=2.9e+02 Score=21.91 Aligned_cols=72 Identities=18% Similarity=0.091 Sum_probs=54.0
Q ss_pred CCcEEEEeC---cc---chHHHHHHHHHHHHcCCCC----hhhcccceEEeCCHHHHHHHHHhhhccCCccccccccccc
Q 032073 72 PVPFLVMNY---DS---FYKKLLDFLGDCEDWGTVA----KDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLK 141 (148)
Q Consensus 72 ~kPivlln~---~g---fwd~L~~~l~~m~~~Gfi~----~~~~~~li~~~d~~ee~l~~L~~~~~~~~~~~~~~~~~~~ 141 (148)
.|.+.++|+ .| -|+.|.++.+...++||.- -++- .-+=-.|.+|+-++...-|.+..+---|.+|||+
T Consensus 25 GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPcNQF--~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~ 102 (162)
T COG0386 25 GKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFPCNQF--GGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGK 102 (162)
T ss_pred CcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEecccccc--ccCCCCCHHHHHHHHHhccCceeeeeeEEeecCC
Confidence 689999998 23 4889999999999999731 0010 0022368899999998889888888889999998
Q ss_pred cccC
Q 032073 142 STHG 145 (148)
Q Consensus 142 ~~~~ 145 (148)
-.|-
T Consensus 103 ~a~P 106 (162)
T COG0386 103 NAHP 106 (162)
T ss_pred CCCc
Confidence 8774
No 127
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=20.51 E-value=1.1e+02 Score=23.94 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=9.8
Q ss_pred ccEEEEccCChhhH
Q 032073 39 RTAVVALPGGVGTL 52 (148)
Q Consensus 39 sdAfI~lPGG~GTL 52 (148)
.| .|++|||.++.
T Consensus 37 ~d-~liipGG~~~~ 49 (184)
T TIGR03800 37 ID-GLIIPGGESTT 49 (184)
T ss_pred CC-EEEECCCCHHH
Confidence 45 56789998885
No 128
>PF11946 DUF3463: Domain of unknown function (DUF3463); InterPro: IPR022563 This functionally uncharacterised domain is found in bacteria and archaea, which is about 140 amino acids in length and is found C-terminal to PF04055 from PFAM. It contains two conserved sequence motifs: CTPWG and PCYL. This domain is associated with hopanoid biosynthesis associated radical SAM proteins.
Probab=20.45 E-value=71 Score=24.66 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=18.4
Q ss_pred CCcEEEEeCccchHHHHHHHHH
Q 032073 72 PVPFLVMNYDSFYKKLLDFLGD 93 (148)
Q Consensus 72 ~kPivlln~~gfwd~L~~~l~~ 93 (148)
.+|+.|+| +||...+.++++.
T Consensus 74 q~PCYLl~-egy~~tfkeLme~ 94 (138)
T PF11946_consen 74 QKPCYLLN-EGYAGTFKELMET 94 (138)
T ss_pred ccCCEEec-CcchhHHHHHHHC
Confidence 68999998 7899999988874
No 129
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=20.25 E-value=2.4e+02 Score=21.77 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=21.2
Q ss_pred ccEEEEc---cCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEe
Q 032073 39 RTAVVAL---PGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 79 (148)
Q Consensus 39 sdAfI~l---PGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln 79 (148)
.+++++. ||| ++++-.+++.... . .+||++..-
T Consensus 30 ~~~vvl~InSpGG--~v~~~~~i~~~l~--~----~~kPvia~v 65 (187)
T cd07020 30 ADALIIELDTPGG--LLDSTREIVQAIL--A----SPVPVVVYV 65 (187)
T ss_pred CCEEEEEEECCCC--CHHHHHHHHHHHH--h----CCCCEEEEE
Confidence 4776666 997 6666666665332 2 378998653
No 130
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=20.20 E-value=3.5e+02 Score=21.87 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=30.0
Q ss_pred ccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCc-----------cchHHHHHHHHHHHHcC
Q 032073 39 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD-----------SFYKKLLDFLGDCEDWG 98 (148)
Q Consensus 39 sdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~-----------gfwd~L~~~l~~m~~~G 98 (148)
.||+|++|.-. ..++..+.+ + . ...|+|++|.. +++..-....+++++.|
T Consensus 121 vdgiIi~~~~~-~~~~~~~~l---~--~----~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G 181 (342)
T PRK10014 121 VDGVVIAGAAG-SSDDLREMA---E--E----KGIPVVFASRASYLDDVDTVRPDNMQAAQLLTEHLIRNG 181 (342)
T ss_pred CCEEEEeCCCC-CcHHHHHHH---h--h----cCCCEEEEecCCCCCCCCEEEeCCHHHHHHHHHHHHHCC
Confidence 59999999642 223332222 1 1 25799988631 24555666677888877
No 131
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.09 E-value=2.1e+02 Score=17.13 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.1
Q ss_pred EEEccCChhhHHHHHHHHHHHhh
Q 032073 42 VVALPGGVGTLDEMFEILALIQL 64 (148)
Q Consensus 42 fI~lPGG~GTLeElfEvlt~~ql 64 (148)
.|.+|...|.|.++..++.-.+.
T Consensus 3 ~v~~~d~pG~L~~i~~~l~~~~~ 25 (65)
T cd04882 3 AVEVPDKPGGLHEILQILSEEGI 25 (65)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCC
Confidence 46889999999999998876654
No 132
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=20.01 E-value=2.9e+02 Score=20.42 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=19.9
Q ss_pred CccEEEEccCChhhHHHH---HHHHHHHhhhhhcCCCCCcEEEEeC
Q 032073 38 DRTAVVALPGGVGTLDEM---FEILALIQLERIGSELPVPFLVMNY 80 (148)
Q Consensus 38 esdAfI~lPGG~GTLeEl---fEvlt~~qlg~~~k~~~kPivlln~ 80 (148)
+.|++ +.|||.+....+ -.+..|.+--.. ..++|+-+..
T Consensus 63 ~~D~l-~v~Gg~~~~~~~~~~~~l~~~l~~~~~---~~~~i~~ic~ 104 (179)
T TIGR01383 63 EFDAI-VLPGGMPGAENLRNSKLLLNILKKQES---KGKLVAAICA 104 (179)
T ss_pred cCCEE-EECCCchHHHHHhhCHHHHHHHHHHHH---CCCEEEEECh
Confidence 34765 558986533322 234445432221 3678876654
Done!