BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032074
         (148 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9
          Processive Endoglucanase From Separately Expressed Gh9
          And Cbm3c Modules
          Length = 466

 Score = 30.0 bits (66), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 60 GEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDD 95
          GE   +++F  E +R G   +S L  + R DSGLDD
Sbjct: 27 GEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDD 62


>pdb|3SE8|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
          Antibody Vrc03 In Complex With Hiv-1 Gp120
          Length = 209

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 73 KRRGMTPTSLLEDSSRTDSGLDDK 96
          KRRG  P  L+ D+SR  SG+ D+
Sbjct: 37 KRRGQVPRLLIYDTSRRASGVPDR 60


>pdb|2VFB|A Chain A, The Structure Of Mycobacterium Marinum Arylamine N-
           Acetyltransferase
 pdb|2VFC|A Chain A, The Structure Of Mycobacterium Marinum Arylamine N-
           Acetyltransferase In Complex With Coa
 pdb|2VFC|B Chain B, The Structure Of Mycobacterium Marinum Arylamine N-
           Acetyltransferase In Complex With Coa
 pdb|3LTW|A Chain A, The Structure Of Mycobacterium Marinum Arylamine
           N-Acetyltransferase In Complex With Hydralazine
          Length = 280

 Score = 26.2 bits (56), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 72  LKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDK 118
           + RRG T   LLED++     L D+  +   D+G   R  +   IDK
Sbjct: 228 IHRRGGTEKILLEDAAAVVDTLGDRFGINVADVG--ERGRLEARIDK 272


>pdb|4B55|A Chain A, Crystal Structure Of The Covalent Adduct Formed Between
           Mycobacterium Marinum Aryalamine N-acetyltransferase And
           Phenyl Vinyl Ketone A Derivative Of Piperidinols
          Length = 283

 Score = 26.2 bits (56), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 72  LKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDK 118
           + RRG T   LLED++     L D+  +   D+G   R  +   IDK
Sbjct: 231 IHRRGGTEKILLEDAAAVVDTLGDRFGINVADVG--ERGRLEARIDK 275


>pdb|1WXR|A Chain A, Crystal Structure Of Heme Binding Protein, An
           Autotransporter Hemoglobine Protease From Pathogenic
           Escherichia Coli
          Length = 1048

 Score = 25.8 bits (55), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 79  PTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDK-----SLADQR 124
           PTS  ++     S   D+  LK  D G  R  T++T I       +L D R
Sbjct: 635 PTSFSQEDWENRSFTFDRLSLKNTDFGLGRNATLNTTIQADNSSVTLGDSR 685


>pdb|3AK5|A Chain A, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
 pdb|3AK5|B Chain B, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
 pdb|3AK5|C Chain C, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
 pdb|3AK5|D Chain D, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
          Length = 975

 Score = 25.8 bits (55), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 79  PTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDK-----SLADQR 124
           PTS  ++     S   D+  LK  D G  R  T++T I       +L D R
Sbjct: 562 PTSFSQEDWENRSFTFDRLSLKNTDFGLGRNATLNTTIQADNSSVTLGDSR 612


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,636,325
Number of Sequences: 62578
Number of extensions: 130943
Number of successful extensions: 193
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 12
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)