BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032074
         (148 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1DN93|ATG1_COCIM Serine/threonine-protein kinase ATG1 OS=Coccidioides immitis
           (strain RS) GN=ATG1 PE=3 SV=1
          Length = 969

 Score = 32.7 bits (73), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 23  NFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRGMTPTSL 82
           +F  +L S   FLR++ LI R  K          Q+    PP S + K L R  + P   
Sbjct: 152 HFLKQLASALQFLRTKDLIHRDLK---------PQNLLLNPPPSTYAKGLLR--IVPYKT 200

Query: 83  LEDSSRTDSGLDDKTKLKEEDIGFSR 108
            EDS     G++    LK  D GF+R
Sbjct: 201 REDSFTPLVGVESLPMLKIADFGFAR 226


>sp|Q63369|NFKB1_RAT Nuclear factor NF-kappa-B p105 subunit (Fragment) OS=Rattus
           norvegicus GN=Nfkb1 PE=2 SV=1
          Length = 522

 Score = 31.6 bits (70), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 16/52 (30%)

Query: 55  DKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGF 106
           +K++ GE P  SLFM   K   + P S +ED              KEED+GF
Sbjct: 8   EKETQGEGP--SLFMASTKTEAIAPASTMED--------------KEEDVGF 43


>sp|P26404|RFBM_SALTY Mannose-1-phosphate guanylyltransferase RfbM OS=Salmonella
           typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
           GN=rfbM PE=1 SV=1
          Length = 479

 Score = 30.8 bits (68), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 63  PPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNT 111
           PP ++    L+  GMTP  L+E  S T  G DD  +L E+  GFS+  T
Sbjct: 430 PPNTI--HALENPGMTPLKLIEIQSGTYLGEDDIIRL-EQRSGFSKEWT 475


>sp|O70458|OSMR_MOUSE Oncostatin-M-specific receptor subunit beta OS=Mus musculus GN=Osmr
           PE=1 SV=1
          Length = 971

 Score = 30.0 bits (66), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 54  GDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGL 93
           GDK +   EPP  +   E KR+ + P SL   S + D+ L
Sbjct: 921 GDKDTLATEPPVPVHGSEYKRQMVVPGSLASPSLKEDNSL 960


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.130    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,410,055
Number of Sequences: 539616
Number of extensions: 1899395
Number of successful extensions: 3835
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3811
Number of HSP's gapped (non-prelim): 46
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)