Query 032074
Match_columns 148
No_of_seqs 24 out of 26
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 14:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fyr_A Sporulation inhibitor S 28.6 17 0.00058 23.5 0.7 15 66-80 29-43 (48)
2 3abi_A Putative uncharacterize 21.3 44 0.0015 26.7 2.0 19 60-78 334-361 (365)
3 4hv0_A AVTR; ribbon-helix-heli 17.5 41 0.0014 25.0 0.9 15 65-79 74-88 (106)
4 2ovm_B NCOR, progesterone rece 12.8 90 0.0031 18.0 1.4 18 130-147 8-25 (26)
5 2b7e_A PRE-mRNA processing pro 11.9 1E+02 0.0035 20.3 1.6 23 62-84 3-25 (59)
6 2z2v_A Hypothetical protein PH 11.2 95 0.0032 25.4 1.6 13 66-78 349-361 (365)
7 1c1y_B Proto-onkogene serine/t 10.8 1E+02 0.0034 21.5 1.3 19 64-82 24-42 (77)
8 2end_A Endonuclease V; 1.45A { 10.3 1.2E+02 0.0043 23.2 1.9 16 67-82 73-88 (138)
9 3ny5_A Serine/threonine-protei 9.5 1.2E+02 0.004 22.0 1.3 19 64-82 36-54 (96)
10 1wxm_A A-RAF proto-oncogene se 9.0 1.5E+02 0.0052 21.0 1.8 19 64-82 30-48 (86)
No 1
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=28.61 E-value=17 Score=23.50 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=10.6
Q ss_pred hhhHHHHHHcCCCCC
Q 032074 66 SLFMKELKRRGMTPT 80 (148)
Q Consensus 66 SLFmKELkRRGmapt 80 (148)
.+..+|+.|||+.|-
T Consensus 29 ~LL~~Ei~RR~L~~~ 43 (48)
T 3fyr_A 29 ELIENEIKRRSLGHI 43 (48)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCccc
Confidence 577899999999764
No 2
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=21.34 E-value=44 Score=26.65 Aligned_cols=19 Identities=53% Similarity=0.938 Sum_probs=14.8
Q ss_pred CCCCchhh---------hHHHHHHcCCC
Q 032074 60 GEEPPESL---------FMKELKRRGMT 78 (148)
Q Consensus 60 geE~pESL---------FmKELkRRGma 78 (148)
|=-+||.+ |++||+.+|+.
T Consensus 334 GV~~PE~l~~~~~~~~~~l~~L~~~GI~ 361 (365)
T 3abi_A 334 GVIPPEILGMREDTFRRIIDELKERGIS 361 (365)
T ss_dssp EEECTHHHHHSHHHHHHHHHHHHHTTCC
T ss_pred CEEChhhcccchhhHHHHHHHHHHCCCe
Confidence 54577765 89999999984
No 3
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=17.48 E-value=41 Score=25.04 Aligned_cols=15 Identities=53% Similarity=0.596 Sum_probs=12.2
Q ss_pred hhhhHHHHHHcCCCC
Q 032074 65 ESLFMKELKRRGMTP 79 (148)
Q Consensus 65 ESLFmKELkRRGmap 79 (148)
|-+.--|||+|||+-
T Consensus 74 e~~ik~elkkrg~s~ 88 (106)
T 4hv0_A 74 EILVKLELKKRGTTL 88 (106)
T ss_dssp HHHHHHHHHHHTCCH
T ss_pred hhhHHHHHHHcCCcH
Confidence 567778999999963
No 4
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=12.81 E-value=90 Score=18.04 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=14.3
Q ss_pred ccccchhhHHHHHhhhcc
Q 032074 130 LNSEGLEVASLLFLITSY 147 (148)
Q Consensus 130 LNSEGLEGLi~~~~~~~~ 147 (148)
-|+-|||.+|--.|..+|
T Consensus 8 ~~~~gleaiirkalmg~y 25 (26)
T 2ovm_B 8 ASNLGLEDIIRKALMGSF 25 (26)
T ss_pred ccccCHHHHHHHHHhhcc
Confidence 367899999988877776
No 5
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=11.94 E-value=1e+02 Score=20.34 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.5
Q ss_pred CCchhhhHHHHHHcCCCCCCccc
Q 032074 62 EPPESLFMKELKRRGMTPTSLLE 84 (148)
Q Consensus 62 E~pESLFmKELkRRGmaptSl~~ 84 (148)
|..|..|++=|++.+..|+-.-+
T Consensus 3 eEae~aF~~lL~~~~V~s~wswe 25 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFS 25 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHH
Confidence 55688999999999999987763
No 6
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=11.20 E-value=95 Score=25.39 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=11.2
Q ss_pred hhhHHHHHHcCCC
Q 032074 66 SLFMKELKRRGMT 78 (148)
Q Consensus 66 SLFmKELkRRGma 78 (148)
.-||+||+++|+.
T Consensus 349 ~~~l~~L~~~Gi~ 361 (365)
T 2z2v_A 349 RRIIDELKERGIS 361 (365)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCc
Confidence 4799999999983
No 7
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=10.75 E-value=1e+02 Score=21.49 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=15.1
Q ss_pred chhhhHHHHHHcCCCCCCc
Q 032074 64 PESLFMKELKRRGMTPTSL 82 (148)
Q Consensus 64 pESLFmKELkRRGmaptSl 82 (148)
.-+.-+|=||+||++|.--
T Consensus 24 lrdaL~KaLk~R~L~pe~C 42 (77)
T 1c1y_B 24 LHDCLMKALKVRGLQPECC 42 (77)
T ss_dssp HHHHHHHHHHTTTCCGGGE
T ss_pred HHHHHHHHHHHcCCCHHHe
Confidence 3456899999999988654
No 8
>2end_A Endonuclease V; 1.45A {Enterobacteria phage T4} SCOP: a.18.1.1 PDB: 1enj_A 1eni_A 1enk_A 2fcc_A* 1vas_A*
Probab=10.32 E-value=1.2e+02 Score=23.21 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=12.8
Q ss_pred hhHHHHHHcCCCCCCc
Q 032074 67 LFMKELKRRGMTPTSL 82 (148)
Q Consensus 67 LFmKELkRRGmaptSl 82 (148)
...+|+.+||+.+.+.
T Consensus 73 ~L~~Em~~RGy~~~~~ 88 (138)
T 2end_A 73 ELIAECLKRGFNIKDT 88 (138)
T ss_dssp HHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHcCCCCCCc
Confidence 3478999999987763
No 9
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=9.50 E-value=1.2e+02 Score=22.04 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.3
Q ss_pred chhhhHHHHHHcCCCCCCc
Q 032074 64 PESLFMKELKRRGMTPTSL 82 (148)
Q Consensus 64 pESLFmKELkRRGmaptSl 82 (148)
.-+.-+|=||+||++|.--
T Consensus 36 lrdaL~KaLk~R~L~pe~C 54 (96)
T 3ny5_A 36 VRDSLKKALMMRGLIPECC 54 (96)
T ss_dssp HHHHHHHHHHTTTCCGGGE
T ss_pred HHHHHHHHHHHcCCChHHe
Confidence 4467899999999988654
No 10
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=9.02 E-value=1.5e+02 Score=21.01 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.3
Q ss_pred chhhhHHHHHHcCCCCCCc
Q 032074 64 PESLFMKELKRRGMTPTSL 82 (148)
Q Consensus 64 pESLFmKELkRRGmaptSl 82 (148)
.-...+|=||+||++|.--
T Consensus 30 lrdaL~KaLk~R~L~pe~C 48 (86)
T 1wxm_A 30 VYDSLDKALKVRGLNQDCC 48 (86)
T ss_dssp SHHHHHHHHHTTTCCSSSE
T ss_pred HHHHHHHHHHHcCCCHHHe
Confidence 4457899999999998654
Done!