Query 032074
Match_columns 148
No_of_seqs 24 out of 26
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 14:53:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032074.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032074hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2enda_ a.18.1.1 (A:) T4 endon 27.9 12 0.00087 27.0 1.7 15 67-81 72-86 (137)
2 d1pv0a_ a.2.12.1 (A:) Sporulat 20.8 22 0.0016 21.5 1.7 14 66-79 27-40 (46)
3 d1rvka1 c.1.11.2 (A:127-381) H 14.6 97 0.007 21.4 4.3 37 42-78 2-40 (255)
4 d1d6za3 d.17.2.1 (A:186-300) C 13.8 34 0.0025 23.0 1.5 18 66-83 18-35 (115)
5 d2oqea3 d.17.2.1 (A:116-236) C 12.6 38 0.0028 22.9 1.4 16 67-82 18-33 (121)
6 d1w6ga3 d.17.2.1 (A:97-211) Co 12.3 38 0.0027 22.7 1.3 17 66-82 20-36 (115)
7 d1w2za3 d.17.2.1 (A:99-206) Co 11.9 39 0.0028 22.4 1.3 18 66-83 21-38 (108)
8 d2gysa4 b.1.2.1 (A:317-416) Co 10.9 68 0.0049 18.6 2.1 14 43-56 74-87 (100)
9 d2hh8a1 d.358.1.1 (A:7-133) Hy 10.5 49 0.0036 22.9 1.4 14 66-79 20-33 (127)
10 d2b7ea1 a.159.2.1 (A:4-59) Pre 9.8 86 0.0062 19.0 2.3 19 65-83 3-21 (56)
No 1
>d2enda_ a.18.1.1 (A:) T4 endonuclease V {Bacteriophage T4 [TaxId: 10665]}
Probab=27.94 E-value=12 Score=26.95 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=12.7
Q ss_pred hhHHHHHHcCCCCCC
Q 032074 67 LFMKELKRRGMTPTS 81 (148)
Q Consensus 67 LFmKELkRRGmaptS 81 (148)
.-++||++||+.|.-
T Consensus 72 ~L~~Em~~RGy~~~~ 86 (137)
T d2enda_ 72 ELIAECLKRGFNIKD 86 (137)
T ss_dssp HHHHHHHHTTCCCSC
T ss_pred HHHHHHHHcCCCCCh
Confidence 468999999998874
No 2
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis [TaxId: 1423]}
Probab=20.82 E-value=22 Score=21.48 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.9
Q ss_pred hhhHHHHHHcCCCC
Q 032074 66 SLFMKELKRRGMTP 79 (148)
Q Consensus 66 SLFmKELkRRGmap 79 (148)
.|+++|+.||.++-
T Consensus 27 ~Lie~Ei~RRsL~h 40 (46)
T d1pv0a_ 27 ELIENEIKRRSLGH 40 (46)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhhhh
Confidence 58999999999854
No 3
>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=14.60 E-value=97 Score=21.42 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=27.4
Q ss_pred cceeEEEeeeccCCCCCCCCCCchhh--hHHHHHHcCCC
Q 032074 42 RRKFKVCCGVQEGDKQSNGEEPPESL--FMKELKRRGMT 78 (148)
Q Consensus 42 ~~~lrV~c~~~eg~~~~~geE~pESL--FmKELkRRGma 78 (148)
|-+++|.++...++.-..+...||.. .+|+++.+|.+
T Consensus 2 Rd~i~~Yas~~~~~~~~~~~~tpe~~~~~a~~~~~~Gf~ 40 (255)
T d1rvka1 2 RDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYK 40 (255)
T ss_dssp CSEEEEEEEECCCCCCTTTTSSHHHHHHHHHHHHHHTCS
T ss_pred CCeeEeceeecCCCccccCCCCHHHHHHHHHHHHHcCCC
Confidence 45788988887776555666777754 78999999974
No 4
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}
Probab=13.84 E-value=34 Score=22.98 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.2
Q ss_pred hhhHHHHHHcCCCCCCcc
Q 032074 66 SLFMKELKRRGMTPTSLL 83 (148)
Q Consensus 66 SLFmKELkRRGmaptSl~ 83 (148)
..|.+.|++||++..+++
T Consensus 18 p~~~aal~kRGi~d~~~V 35 (115)
T d1d6za3 18 EEFAAAVKKRGITDAKKV 35 (115)
T ss_dssp HHHHHHHHHTTCSCGGGE
T ss_pred HHHHHHHHHcCCCCcceE
Confidence 358999999999865554
No 5
>d2oqea3 d.17.2.1 (A:116-236) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]}
Probab=12.60 E-value=38 Score=22.87 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.1
Q ss_pred hhHHHHHHcCCCCCCc
Q 032074 67 LFMKELKRRGMTPTSL 82 (148)
Q Consensus 67 LFmKELkRRGmaptSl 82 (148)
.|-++|+|||++++-+
T Consensus 18 ~v~~al~~rGi~~~d~ 33 (121)
T d2oqea3 18 AVIEQCVLSGIPANEM 33 (121)
T ss_dssp HHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHcCCCcccc
Confidence 5889999999977643
No 6
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]}
Probab=12.29 E-value=38 Score=22.75 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=13.3
Q ss_pred hhhHHHHHHcCCCCCCc
Q 032074 66 SLFMKELKRRGMTPTSL 82 (148)
Q Consensus 66 SLFmKELkRRGmaptSl 82 (148)
..|.+.|+|||+++...
T Consensus 20 p~~~~al~kRGid~~~V 36 (115)
T d1w6ga3 20 ERWLKALAARNLDVSKV 36 (115)
T ss_dssp HHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHcCCCHHHE
Confidence 36999999999965543
No 7
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=11.92 E-value=39 Score=22.44 Aligned_cols=18 Identities=22% Similarity=0.641 Sum_probs=13.8
Q ss_pred hhhHHHHHHcCCCCCCcc
Q 032074 66 SLFMKELKRRGMTPTSLL 83 (148)
Q Consensus 66 SLFmKELkRRGmaptSl~ 83 (148)
-.|.+.|+|||+++....
T Consensus 21 p~~~~al~~RGId~~~V~ 38 (108)
T d1w2za3 21 PPFIDSVKKRGLNLSEIV 38 (108)
T ss_dssp HHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHcCCChhhEE
Confidence 369999999999655443
No 8
>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.89 E-value=68 Score=18.57 Aligned_cols=14 Identities=7% Similarity=-0.168 Sum_probs=10.3
Q ss_pred ceeEEEeeeccCCC
Q 032074 43 RKFKVCCGVQEGDK 56 (148)
Q Consensus 43 ~~lrV~c~~~eg~~ 56 (148)
-.|||+|....|..
T Consensus 74 Y~~rVRa~~~~g~~ 87 (100)
T d2gysa4 74 YWARVRVRTSRTGY 87 (100)
T ss_dssp CEEEEEEEECCTTC
T ss_pred EEEEEEEEECCCCC
Confidence 47899999776643
No 9
>d2hh8a1 d.358.1.1 (A:7-133) Hypothetical protein YdfO {Escherichia coli [TaxId: 562]}
Probab=10.47 E-value=49 Score=22.91 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=12.0
Q ss_pred hhhHHHHHHcCCCC
Q 032074 66 SLFMKELKRRGMTP 79 (148)
Q Consensus 66 SLFmKELkRRGmap 79 (148)
..|++|||+-|++-
T Consensus 20 p~~~~~lk~~gV~~ 33 (127)
T d2hh8a1 20 QWFYSELKRHNVSH 33 (127)
T ss_dssp HHHHHHHHHHCSSE
T ss_pred HHHHHHHHHhCcee
Confidence 47999999999954
No 10
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.78 E-value=86 Score=18.96 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=17.0
Q ss_pred hhhhHHHHHHcCCCCCCcc
Q 032074 65 ESLFMKELKRRGMTPTSLL 83 (148)
Q Consensus 65 ESLFmKELkRRGmaptSl~ 83 (148)
|..|++=|++++..|++.-
T Consensus 3 ~~aF~~lL~e~~V~s~wtW 21 (56)
T d2b7ea1 3 EKEFITMLKENQVDSTWSF 21 (56)
T ss_dssp HHHHHHHHHHTTCCSSCCH
T ss_pred HHHHHHHHHHcCCCCCCcH
Confidence 5689999999999999886
Done!