BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032076
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DJ7|A Chain A, Crystal Structure Of Ferredoxin Thioredoxin Reductase
Length = 117
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 91/110 (82%)
Query: 39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
+ K++ M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 7 NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 66
Query: 99 AQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTANM 148
+ FWNCPCVPMRERKECHCMLFLTP+NDFAG Q I ++ ++E A+M
Sbjct: 67 VKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDIPMETLEEVKASM 116
>pdb|2PU9|A Chain A, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|A Chain A, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 110
Score = 167 bits (422), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 71/108 (65%), Positives = 90/108 (83%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
K++ M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE +
Sbjct: 2 KTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVK 61
Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTANM 148
FWNCPCVPMRERKECHCMLFLTP+NDFAG Q I ++ ++E A+M
Sbjct: 62 NTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDIPMETLEEVKASM 109
>pdb|2PUK|A Chain A, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|E Chain E, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUO|A Chain A, Crystal Srtucture Of The Nem Modified
Ferredoxin:thioredoxin Reductase
Length = 109
Score = 164 bits (416), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 90/109 (82%)
Query: 39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
+ K++ M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 1 NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 60
Query: 99 AQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTAN 147
+ FWNCPCVPMRERKECHCMLFLTP+NDFAG Q I ++ ++E A+
Sbjct: 61 VKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDIPMETLEEVKAS 109
>pdb|2PVD|A Chain A, Crystal Srtucture Of The Reduced Ferredoxin:thioredoxin
Reductase
Length = 107
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 70/103 (67%), Positives = 86/103 (83%)
Query: 46 MRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWN 105
M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY DK AE + FWN
Sbjct: 4 MKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYADKEAEVKNTFWN 63
Query: 106 CPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTANM 148
CPCVPMRERKECHCMLFLTP+NDFAG Q I ++ ++E A+M
Sbjct: 64 CPCVPMRERKECHCMLFLTPDNDFAGDAQGIPMETLEEKKASM 106
>pdb|2PVG|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin
And Ferredoxin:thioredoxin Reductase
Length = 108
Score = 163 bits (412), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 88/106 (83%)
Query: 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
++ M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE +
Sbjct: 3 TLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKN 62
Query: 102 GFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTAN 147
FWNCPCVPMRERKECHCMLFLTP+NDFAG Q I ++ ++E A+
Sbjct: 63 TFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDIPMETLEEKKAS 108
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 8 CGSGVSTFICTPRPIIARPRPV--------TQIRAQVEPSEKSVEIMRKFSE------QY 53
CG G TPRP+I P ++ + + K E +F++ +Y
Sbjct: 157 CGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEY 216
Query: 54 ARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRH 91
A R ++K V + + + K+ L A + RH
Sbjct: 217 ASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARH 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,974,970
Number of Sequences: 62578
Number of extensions: 138161
Number of successful extensions: 245
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 7
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)