Query 032076
Match_columns 148
No_of_seqs 108 out of 193
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj7_A Ferredoxin thioredoxin 100.0 5.5E-50 1.9E-54 302.9 7.6 115 34-148 2-116 (117)
2 1u2m_A Histone-like protein HL 53.9 12 0.00043 26.7 3.6 37 39-75 95-142 (143)
3 2kvo_A Photosystem II reaction 46.5 11 0.00039 28.2 2.4 27 38-64 85-111 (120)
4 1n0z_A ZNF265; zinc finger, RN 39.7 11 0.00036 23.3 1.1 18 101-118 12-34 (45)
5 2k9i_A Plasmid PRN1, complete 37.1 27 0.00093 20.6 2.7 32 44-77 18-49 (55)
6 2cly_C ATP synthase coupling f 36.3 55 0.0019 22.7 4.4 43 42-85 12-54 (77)
7 1cyi_A Cytochrome C6, cytochro 34.2 34 0.0012 21.4 3.0 25 37-61 66-90 (90)
8 2cpg_A REPA protein, transcrip 31.7 44 0.0015 19.0 2.9 30 44-76 11-40 (45)
9 2pyq_A Uncharacterized protein 30.1 47 0.0016 24.6 3.4 31 44-76 7-37 (114)
10 2k1p_A Zinc finger RAN-binding 30.0 20 0.00068 20.6 1.1 17 101-117 4-23 (33)
11 3jvd_A Transcriptional regulat 28.7 34 0.0012 26.6 2.7 46 44-89 35-100 (333)
12 3kjx_A Transcriptional regulat 28.1 54 0.0018 25.4 3.7 46 37-86 36-101 (344)
13 1qpz_A PURA, protein (purine n 28.1 63 0.0022 24.9 4.1 22 65-86 70-91 (340)
14 3e3m_A Transcriptional regulat 26.8 37 0.0013 26.5 2.6 42 45-86 42-103 (355)
15 1th8_A Anti-sigma F factor; SP 25.6 96 0.0033 20.8 4.3 46 39-85 12-57 (145)
16 3dbi_A Sugar-binding transcrip 25.5 45 0.0015 25.7 2.8 46 45-90 33-100 (338)
17 3cyv_A URO-D, UPD, uroporphyri 24.9 80 0.0027 25.5 4.3 34 44-77 306-347 (354)
18 3ctp_A Periplasmic binding pro 24.1 47 0.0016 25.6 2.7 23 65-87 72-94 (330)
19 3vu7_H DNA repair protein REV1 23.7 1.7E+02 0.0058 21.4 5.5 39 36-80 53-91 (124)
20 2o20_A Catabolite control prot 22.8 51 0.0017 25.4 2.6 42 45-86 35-96 (332)
21 3bil_A Probable LACI-family tr 22.4 53 0.0018 25.7 2.7 43 45-87 38-100 (348)
22 1jx6_A LUXP protein; protein-l 20.8 88 0.003 23.9 3.6 43 44-86 16-77 (342)
23 2hsg_A Glucose-resistance amyl 20.5 1.1E+02 0.0037 23.4 4.1 45 38-86 29-93 (332)
24 1ng7_A Poliovirus 3A-N, genome 20.4 92 0.0031 20.6 3.1 29 33-61 16-45 (60)
25 2oie_A RS21-C6; helix, hydrola 20.1 68 0.0023 21.9 2.6 42 32-74 5-48 (111)
No 1
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=100.00 E-value=5.5e-50 Score=302.87 Aligned_cols=115 Identities=62% Similarity=1.215 Sum_probs=104.7
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCcccCCchhhhhCCceeecCccccc
Q 032076 34 AQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRE 113 (148)
Q Consensus 34 ~~~~~s~k~~e~~~~~~ekyAek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~~CPCRl~~dke~E~~d~diICPC~y~~e 113 (148)
..++++++++++|++|+++||+++||+||||+++|+.|++||++||++||+||||||++.|+++|++.++|||||+||++
T Consensus 2 ~~~~~~~~~~e~~~~f~ek~ae~~G~~~NpD~evt~~vi~GLa~nk~~yG~~~CPCR~~gdke~d~~~~~iiCPC~~~re 81 (117)
T 1dj7_A 2 SSDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRE 81 (117)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCSSSCCSCHHHHHHHCTTBSSCHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCcCCCChhhhcccCCeecCCcChhh
Confidence 35678999999999999999999999999999999999999999999999999999999767776666779999999999
Q ss_pred CceeeeeeeecCCCCCCCCcccccHHHHHHhhhcC
Q 032076 114 RKECHCMLFLTPENDFAGQDQSISLDEIKESTANM 148 (148)
Q Consensus 114 ~G~ChCgLFvs~e~~~~g~~q~i~~~~~~~~~~~~ 148 (148)
+|+|||||||+++|+|+|+.|.|++++|.+.+.+|
T Consensus 82 ~G~ChC~Lfvt~e~~~~g~~~~i~~~~~~~~~~~~ 116 (117)
T 1dj7_A 82 RKECHCMLFLTPDNDFAGDAQDIPMETLEEVKASM 116 (117)
T ss_dssp HCCCTTSSSBCTTSTTBCSCSCCCHHHHHHHHHC-
T ss_pred cCceeEeeeecccccccCccccccHHHHHHHHhhc
Confidence 99999999999999999999999999999998875
No 2
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=53.93 E-value=12 Score=26.71 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHHHhhhcCcE----------eccCh-hhHHHHHHHH
Q 032076 39 SEKSVEIMRKFSEQYARRSDTF----------FCVDK-SVTSVVIKGL 75 (148)
Q Consensus 39 s~k~~e~~~~~~ekyAek~Gy~----------lNPD~-ev~~~Vi~GL 75 (148)
.....+++.+.++.+|+..||- .+|.- ++|+.|++.|
T Consensus 95 ~~~i~~~i~~ai~~vak~~gy~~Vld~~~vly~~~~~~DIT~~Vi~~L 142 (143)
T 1u2m_A 95 RGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV 142 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEGGGEEEECTTSCBCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEECCceeEeCCCcCchHHHHHHHh
Confidence 3556677889999999999984 35676 8888888765
No 3
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=46.46 E-value=11 Score=28.20 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHHHhhhcCcEeccC
Q 032076 38 PSEKSVEIMRKFSEQYARRSDTFFCVD 64 (148)
Q Consensus 38 ~s~k~~e~~~~~~ekyAek~Gy~lNPD 64 (148)
.+++..+.+.+|+++||+.+|.-|...
T Consensus 85 ~s~~~WdRFMRFMeRYA~~Ngl~f~k~ 111 (120)
T 2kvo_A 85 NSQPEWDRFMRFMERYGAENGLGFSKS 111 (120)
T ss_dssp CSSHHHHHHHHHHHHHHHHCCSSSCST
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccC
Confidence 489999999999999999999877654
No 4
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=39.67 E-value=11 Score=23.33 Aligned_cols=18 Identities=39% Similarity=1.093 Sum_probs=13.0
Q ss_pred CCceeec---Cccc--ccCceee
Q 032076 101 QGFWNCP---CVPM--RERKECH 118 (148)
Q Consensus 101 d~diICP---C~y~--~e~G~Ch 118 (148)
..||+|| |-.+ ..+..|+
T Consensus 12 ~GDW~C~~~~C~~~Nfa~R~~C~ 34 (45)
T 1n0z_A 12 DGDWICPDKKCGNVNFARRTSCD 34 (45)
T ss_dssp SSSCBCSSTTTCCBCCSSCSBCS
T ss_pred CCCcCCCCCCCCCEEcccccccc
Confidence 5789999 9874 4566664
No 5
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=37.10 E-value=27 Score=20.61 Aligned_cols=32 Identities=6% Similarity=0.029 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHH
Q 032076 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLAD 77 (148)
Q Consensus 44 e~~~~~~ekyAek~Gy~lNPD~ev~~~Vi~GLa~ 77 (148)
+++++.++.+|++.|. +..+=+..+|.+-|.+
T Consensus 18 ~el~~~l~~~a~~~g~--s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 18 QEWHDRLMEIAKEKNL--TLSDVCRLAIKEYLDN 49 (55)
T ss_dssp HHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence 4556668888888886 4444333444444433
No 6
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=36.35 E-value=55 Score=22.73 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCC
Q 032076 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (148)
Q Consensus 42 ~~e~~~~~~ekyAek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~ 85 (148)
=++++|++-.+-+ ..|=...+.+++-..+-+-|.+-...||..
T Consensus 12 FldKIREYk~Ks~-~~G~lVD~~Pe~~kel~~el~kL~~~YGgg 54 (77)
T 2cly_C 12 FVDKIREYRTKRQ-TSGGPVDAGPEYQQDLDRELFKLKQMYGKA 54 (77)
T ss_dssp HHHHHHHHHHHHT-CCSSSSSCCTHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhcc-cCCCCCCCCHHHHHHHHHHHHHHHHHHCcc
Confidence 4678888866655 347899999999999999999999999976
No 7
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=34.19 E-value=34 Score=21.42 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHHHhhhcCcEe
Q 032076 37 EPSEKSVEIMRKFSEQYARRSDTFF 61 (148)
Q Consensus 37 ~~s~k~~e~~~~~~ekyAek~Gy~l 61 (148)
..++++++.+-.|+.....+.||.|
T Consensus 66 ~ls~~ei~~l~~yl~~~~~~~~W~~ 90 (90)
T 1cyi_A 66 RLSEEEIQAVAEYVFKQATDAAWKY 90 (90)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTCCC-
T ss_pred cCCHHHHHHHHHHHHhcccccCCCC
Confidence 4799999999999999998888864
No 8
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=31.71 E-value=44 Score=19.01 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhcCcEeccChhhHHHHHHHHH
Q 032076 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLA 76 (148)
Q Consensus 44 e~~~~~~ekyAek~Gy~lNPD~ev~~~Vi~GLa 76 (148)
+++.+.++++|++.|. +-.+++...++..+
T Consensus 11 ~~l~~~Ld~~a~~~g~---srS~~ir~ai~~~l 40 (45)
T 2cpg_A 11 ESVLENLEKMAREMGL---SKSAMISVALENYK 40 (45)
T ss_dssp HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCc---CHHHHHHHHHHHHH
Confidence 4566778888888885 34445444444433
No 9
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=30.12 E-value=47 Score=24.64 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhcCcEeccChhhHHHHHHHHH
Q 032076 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLA 76 (148)
Q Consensus 44 e~~~~~~ekyAek~Gy~lNPD~ev~~~Vi~GLa 76 (148)
+.|-++++.+-+ -|-.+||.+++..|..||-
T Consensus 7 e~ia~Y~~d~k~--k~~~~~D~~ll~kv~~~lG 37 (114)
T 2pyq_A 7 DLIAQYADDLRN--KCGMEPDMALLEKVTKGCG 37 (114)
T ss_dssp HHHHHHHHHHHH--TTCCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH--HhCCCCCHHHHHHHHHhcC
Confidence 344444444433 4556999999999999983
No 10
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=29.98 E-value=20 Score=20.58 Aligned_cols=17 Identities=35% Similarity=1.026 Sum_probs=10.5
Q ss_pred CCceeec-Cccc--ccCcee
Q 032076 101 QGFWNCP-CVPM--RERKEC 117 (148)
Q Consensus 101 d~diICP-C~y~--~e~G~C 117 (148)
..||+|| |-.+ ..+-.|
T Consensus 4 ~gDW~C~~C~~~Nfa~R~~C 23 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARRSEC 23 (33)
T ss_dssp SSSCBCSSSCCBCCTTCSBC
T ss_pred CCCcccCCCCCccccccccc
Confidence 4589999 7663 344444
No 11
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=28.74 E-value=34 Score=26.63 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCCCCC
Q 032076 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLCPC 89 (148)
Q Consensus 44 e~~~~~~ekyAek~Gy~lNP--------------------D~ev~~~Vi~GLa~NK~rYG~~~CPC 89 (148)
+++++.+.+.|++.||.-|+ +..+...++.|+..--.++|+..=-+
T Consensus 35 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 100 (333)
T 3jvd_A 35 PQTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVA 100 (333)
T ss_dssp -----------------------------CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 33455566677777776554 33577889999999989999865443
No 12
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.15 E-value=54 Score=25.39 Aligned_cols=46 Identities=11% Similarity=0.002 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 032076 37 EPSEKSVEIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (148)
Q Consensus 37 ~~s~k~~e~~~~~~ekyAek~Gy~lNP--------------------D~ev~~~Vi~GLa~NK~rYG~~~ 86 (148)
..++++.++ +.+.|++.||.-|+ +..+...+++|+..--.++|+..
T Consensus 36 ~vs~~tr~r----V~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~ 101 (344)
T 3kjx_A 36 DVSDATRAR----VLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQP 101 (344)
T ss_dssp CCCHHHHHH----HHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEE
T ss_pred CCCHHHHHH----HHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence 356665555 66677777787664 23467889999999999999875
No 13
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=28.14 E-value=63 Score=24.93 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHhHhhhCCCC
Q 032076 65 KSVTSVVIKGLADHKDSLGAPL 86 (148)
Q Consensus 65 ~ev~~~Vi~GLa~NK~rYG~~~ 86 (148)
..+...+++|+..--.++|+..
T Consensus 70 ~~~~~~~~~gi~~~a~~~g~~~ 91 (340)
T 1qpz_A 70 AAYFAEIIEAVEKNCFQKGYTL 91 (340)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEE
T ss_pred ChHHHHHHHHHHHHHHHcCCEE
Confidence 4567789999999888899864
No 14
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=26.76 E-value=37 Score=26.54 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 032076 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (148)
Q Consensus 45 ~~~~~~ekyAek~Gy~lNP--------------------D~ev~~~Vi~GLa~NK~rYG~~~ 86 (148)
++++.+.+.|++.||.-|+ +..+...++.|+..--.++|+..
T Consensus 42 ~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~ 103 (355)
T 3e3m_A 42 ETRERILKVVKDMNYVPDQVAGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQL 103 (355)
T ss_dssp -----------------------------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEE
Confidence 4455566777788887664 22466789999999999999875
No 15
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=25.63 E-value=96 Score=20.83 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCC
Q 032076 39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (148)
Q Consensus 39 s~k~~e~~~~~~ekyAek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~ 85 (148)
..+.+..++.++..++...+.-. .|...+..++.-|+.|--+||..
T Consensus 12 ~~~~~~~~r~~~~~~~~~~~~~~-~~~~~l~~il~~l~~Nai~h~~~ 57 (145)
T 1th8_A 12 RSENESFARVTVAAFVAQLDPTM-DELTEIKTVVSEAVTNAIIHGYN 57 (145)
T ss_dssp CTTHHHHHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHHHHHHTTST
T ss_pred chhhHHHHHHHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHhcC
Confidence 34667888999999998877543 46778889999999999999975
No 16
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=25.53 E-value=45 Score=25.71 Aligned_cols=46 Identities=13% Similarity=-0.090 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhcCcEecc----------------------ChhhHHHHHHHHHHhHhhhCCCCCCCc
Q 032076 45 IMRKFSEQYARRSDTFFCV----------------------DKSVTSVVIKGLADHKDSLGAPLCPCR 90 (148)
Q Consensus 45 ~~~~~~ekyAek~Gy~lNP----------------------D~ev~~~Vi~GLa~NK~rYG~~~CPCR 90 (148)
++++.+.+.|++.||.-|+ +..+...++.|+.+--.++|+..=-+.
T Consensus 33 ~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 100 (338)
T 3dbi_A 33 ETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD 100 (338)
T ss_dssp ---------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3455566677777776543 345778899999999999998654433
No 17
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=24.94 E-value=80 Score=25.46 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhcCcEeccC--------hhhHHHHHHHHHH
Q 032076 44 EIMRKFSEQYARRSDTFFCVD--------KSVTSVVIKGLAD 77 (148)
Q Consensus 44 e~~~~~~ekyAek~Gy~lNPD--------~ev~~~Vi~GLa~ 77 (148)
+++++.++.+....||.||++ .+-+..+++..-+
T Consensus 306 ~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~env~a~v~~v~~ 347 (354)
T 3cyv_A 306 EEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHR 347 (354)
T ss_dssp HHHHHHHTTTTTSSCEEBCBSSCCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEecCCCCCCCCCHHHHHHHHHHHHH
Confidence 344444444454468999998 4445555554443
No 18
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=24.09 E-value=47 Score=25.56 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHhHhhhCCCCC
Q 032076 65 KSVTSVVIKGLADHKDSLGAPLC 87 (148)
Q Consensus 65 ~ev~~~Vi~GLa~NK~rYG~~~C 87 (148)
..+...++.|+..--.++|+..=
T Consensus 72 ~~~~~~~~~gi~~~~~~~g~~~~ 94 (330)
T 3ctp_A 72 NPFFNQMASVIEEYAKNKGYTLF 94 (330)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHHHHCCCEEE
Confidence 34677899999988888998653
No 19
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=23.67 E-value=1.7e+02 Score=21.36 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHh
Q 032076 36 VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKD 80 (148)
Q Consensus 36 ~~~s~k~~e~~~~~~ekyAek~Gy~lNPD~ev~~~Vi~GLa~NK~ 80 (148)
..|.+++++.+.+|+.+.++. -|-+-+..|++-|-+.-+
T Consensus 53 ~~P~~~DV~~l~~yL~~lVee------k~Lek~~~vlk~l~rlv~ 91 (124)
T 3vu7_H 53 SDPMEEDILQVVKYCTDLIEE------KDLEKLDLVIKYMKRLMQ 91 (124)
T ss_dssp CSCCHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhc------ccHHHHHHHHHHHHHHHh
Confidence 346667777777777766642 355666666666655443
No 20
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.78 E-value=51 Score=25.38 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 032076 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (148)
Q Consensus 45 ~~~~~~ekyAek~Gy~lNP--------------------D~ev~~~Vi~GLa~NK~rYG~~~ 86 (148)
++++.+.+.|++.||.-|+ +..+...++.|+..--.++|+..
T Consensus 35 ~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~ 96 (332)
T 2o20_A 35 KTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNM 96 (332)
T ss_dssp ---------------------------CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEE
Confidence 3444555666666665442 23477889999999888999865
No 21
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.40 E-value=53 Score=25.70 Aligned_cols=43 Identities=9% Similarity=-0.017 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCCC
Q 032076 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLC 87 (148)
Q Consensus 45 ~~~~~~ekyAek~Gy~lNP--------------------D~ev~~~Vi~GLa~NK~rYG~~~C 87 (148)
++++.+.+.|++.||.-|+ +..+...++.|+..--.++|+..=
T Consensus 38 ~tr~rV~~aa~~lgY~pn~~ar~l~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 100 (348)
T 3bil_A 38 STRERIQQLASDLGYRANAQARALRSSRSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATI 100 (348)
T ss_dssp ------------------------------CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEE
Confidence 3444455566666665443 234667899999888888998753
No 22
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=20.85 E-value=88 Score=23.92 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhcCcEec----------------cC---hhhHHHHHHHHHHhHhhhCCCC
Q 032076 44 EIMRKFSEQYARRSDTFFC----------------VD---KSVTSVVIKGLADHKDSLGAPL 86 (148)
Q Consensus 44 e~~~~~~ekyAek~Gy~lN----------------PD---~ev~~~Vi~GLa~NK~rYG~~~ 86 (148)
+++++.+.+.|++.||.-| |+ ..+...+++|+..--.++|+.+
T Consensus 16 ~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~ 77 (342)
T 1jx6_A 16 PEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINY 77 (342)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeE
Confidence 4456667777777777554 33 4577889999999888999753
No 23
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=20.45 E-value=1.1e+02 Score=23.40 Aligned_cols=45 Identities=7% Similarity=-0.059 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHHHHHhhhcCcEec------------------c--ChhhHHHHHHHHHHhHhhhCCCC
Q 032076 38 PSEKSVEIMRKFSEQYARRSDTFFC------------------V--DKSVTSVVIKGLADHKDSLGAPL 86 (148)
Q Consensus 38 ~s~k~~e~~~~~~ekyAek~Gy~lN------------------P--D~ev~~~Vi~GLa~NK~rYG~~~ 86 (148)
.++++.++ +.+.|++.||.-| | +..+...++.|+..--.++|+..
T Consensus 29 vs~~tr~r----V~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~ 93 (332)
T 2hsg_A 29 VKPSTRKK----VLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNI 93 (332)
T ss_dssp SCHHHHHH----HHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHH----HHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEE
Confidence 55555544 5556666666544 2 23467789999998888899864
No 24
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=20.40 E-value=92 Score=20.62 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=21.3
Q ss_pred cccCCCChHHHHHHH-HHHHHHhhhcCcEe
Q 032076 33 RAQVEPSEKSVEIMR-KFSEQYARRSDTFF 61 (148)
Q Consensus 33 ~~~~~~s~k~~e~~~-~~~ekyAek~Gy~l 61 (148)
++.+..--+.++... .-+.+|++++||.+
T Consensus 16 ~ppP~aI~DLLksvds~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 16 SPPPECINDLLQAVDSQEVRDYCEKKGWIV 45 (60)
T ss_dssp CCSSTTTHHHHHHHCCHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHCCcee
Confidence 334444556677777 67789999999998
No 25
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=20.07 E-value=68 Score=21.95 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=26.2
Q ss_pred ccccCCCChHHHHHHHHHHHHHhhhcCcE-e-ccChhhHHHHHHH
Q 032076 32 IRAQVEPSEKSVEIMRKFSEQYARRSDTF-F-CVDKSVTSVVIKG 74 (148)
Q Consensus 32 ~~~~~~~s~k~~e~~~~~~ekyAek~Gy~-l-NPD~ev~~~Vi~G 74 (148)
+++.+-|..-+++++.+.+.+++...+|- + +|. .+...|.+=
T Consensus 5 ~~~~~~p~~m~~~~lq~~~~~~~~~~dw~~~~~~~-~~~~~L~eE 48 (111)
T 2oie_A 5 SRPFRFSPEPTLEDIRRLHAEFAAERDWEQFHQPR-NLLLALVGE 48 (111)
T ss_dssp -CCCCCCSCSCHHHHHHHHHHHHHTTTCGGGCCHH-HHHHHHHHH
T ss_pred CCCCCCCccccHHHHHHHHHHHHHHCCCcccCCHH-HHHHHHHHH
Confidence 34444455556888899999998888884 3 443 444444443
Done!