Query 032077
Match_columns 147
No_of_seqs 131 out of 661
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 58.6 22 0.00075 24.5 5.4 61 47-109 6-71 (107)
2 2nz0_B Potassium voltage-gated 52.8 20 0.00067 26.5 4.6 63 45-110 33-97 (140)
3 2vkp_A BTB/POZ domain-containi 47.8 26 0.00089 22.9 4.3 56 50-109 12-73 (109)
4 1vd2_A Protein kinase C, IOTA 45.2 20 0.00068 24.8 3.4 35 54-92 15-49 (89)
5 1und_A Advillin, P92; actin bi 43.9 6.5 0.00022 23.3 0.6 19 64-82 1-19 (37)
6 1w8x_N Protein P31, protein C, 40.2 8.6 0.00029 28.3 0.9 28 45-72 86-123 (126)
7 2al3_A TUG long isoform; TUG U 37.6 29 0.001 24.2 3.3 37 48-86 11-47 (90)
8 1z3x_A Putative cytidyltransfe 34.1 2.9 9.9E-05 34.2 -2.8 30 41-71 207-236 (238)
9 2xko_C PIPX, global nitrogen r 33.1 4.6 0.00016 28.6 -1.5 15 63-77 4-18 (89)
10 2vpk_A Myoneurin; transcriptio 30.1 67 0.0023 21.3 4.1 47 56-109 31-82 (116)
11 3qli_A Coenzyme A transferase; 27.5 21 0.00072 31.3 1.4 46 38-84 398-454 (455)
12 1y6i_A Mg-chelatase cofactor G 26.6 7 0.00024 31.8 -1.7 30 41-72 199-229 (233)
13 1r29_A B-cell lymphoma 6 prote 23.3 79 0.0027 21.3 3.5 53 52-109 35-91 (127)
14 3ga1_A Nucleus accumbens-assoc 23.0 99 0.0034 21.0 4.0 52 50-109 37-92 (129)
15 3drx_A BTB/POZ domain-containi 23.0 57 0.0019 25.7 3.0 62 46-109 11-77 (202)
16 1yu8_X Villin; alpha helix, 3- 22.5 24 0.00081 23.4 0.6 20 64-83 31-50 (67)
17 3n5b_B ASR0485 protein; PII, P 22.5 9.4 0.00032 28.0 -1.5 31 41-78 12-42 (112)
18 2i46_A Adrenocortical dysplasi 22.0 38 0.0013 26.0 1.6 47 43-92 47-94 (161)
19 2lkt_A Retinoic acid receptor 21.0 39 0.0013 23.6 1.5 10 47-56 22-31 (125)
20 2bw3_A Transposase; DNA recomb 20.7 1.3E+02 0.0045 25.2 5.0 45 61-105 32-79 (534)
21 1ujs_A Actin-binding LIM prote 20.2 28 0.00095 24.3 0.6 20 64-83 46-65 (88)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=58.62 E-value=22 Score=24.50 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=43.9
Q ss_pred CeEEEEecCceeeeEeccCcC-cH--HHHHHHHHhHHhcC--CCCCCCeeecCcHHHHHHHHHHHhcC
Q 032077 47 GHFVVYATDEKRFVIPLAYLK-NN--VIRELFKMAEDEFG--LPSCGPITLPCDAVFMEYVVSLIQRG 109 (147)
Q Consensus 47 G~~~VYVGe~~RfvVp~~yLn-hP--~F~~LL~~aeeEfG--~~~~G~L~IPC~~~~Fe~vl~li~~~ 109 (147)
..+.+-|| +.||.+..+-|. +| .|..|.... .++. .+.+|.+-|-.+...|++|+..++.+
T Consensus 6 ~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g 71 (107)
T 3drz_A 6 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHG 71 (107)
T ss_dssp CEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHS
T ss_pred CEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCC
Confidence 45667787 678998877765 33 566664321 1232 34678999999999999999999876
No 2
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=52.80 E-value=20 Score=26.46 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=41.5
Q ss_pred CCCeEEEEecCceeeeEeccCc-CcHHHHHHHHHhHHhcCC-CCCCCeeecCcHHHHHHHHHHHhcCc
Q 032077 45 EKGHFVVYATDEKRFVIPLAYL-KNNVIRELFKMAEDEFGL-PSCGPITLPCDAVFMEYVVSLIQRGA 110 (147)
Q Consensus 45 pkG~~~VYVGe~~RfvVp~~yL-nhP~F~~LL~~aeeEfG~-~~~G~L~IPC~~~~Fe~vl~li~~~~ 110 (147)
....+.+-|| +.||.+..+-| ++|- .+|..++...-+ +.+|.+-|-.|...|++||..++.+.
T Consensus 33 ~~~~V~LNVG-G~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~ 97 (140)
T 2nz0_B 33 QDELIVLNVS-GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 97 (140)
T ss_dssp CCCEEEEEET-TEEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEEC-CEEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCC
Confidence 3456666677 56777766544 2231 133334433333 36789999999999999999998864
No 3
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=47.79 E-value=26 Score=22.95 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=38.9
Q ss_pred EEEecC---ceeeeEeccCc--CcHHHHHHHHHhHHhcCCCCCCCeeec-CcHHHHHHHHHHHhcC
Q 032077 50 VVYATD---EKRFVIPLAYL--KNNVIRELFKMAEDEFGLPSCGPITLP-CDAVFMEYVVSLIQRG 109 (147)
Q Consensus 50 ~VYVGe---~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~li~~~ 109 (147)
.+.||+ +++|-+.-..| ..|.|+.++...-.|- . ..|.|| .+...|+.++..+-.+
T Consensus 12 ~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~ 73 (109)
T 2vkp_A 12 HFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSD 73 (109)
T ss_dssp EEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHC
T ss_pred EEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCC
Confidence 344555 38888887777 5899999997543332 2 678887 5889999999888775
No 4
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=45.23 E-value=20 Score=24.83 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=27.9
Q ss_pred cCceeeeEeccCcCcHHHHHHHHHhHHhcCCCCCCCeee
Q 032077 54 TDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITL 92 (147)
Q Consensus 54 Ge~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~~~G~L~I 92 (147)
||-.|+-||. ...|.+|.++-.+-|++..+.++++
T Consensus 15 gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 15 GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 6778898987 4689999999999999865555444
No 5
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=43.95 E-value=6.5 Score=23.33 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=17.1
Q ss_pred cCcCcHHHHHHHHHhHHhc
Q 032077 64 AYLKNNVIRELFKMAEDEF 82 (147)
Q Consensus 64 ~yLnhP~F~~LL~~aeeEf 82 (147)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 6
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=40.18 E-value=8.6 Score=28.28 Aligned_cols=28 Identities=25% Similarity=0.607 Sum_probs=19.1
Q ss_pred CCCeEEEEecCceeee----------EeccCcCcHHHH
Q 032077 45 EKGHFVVYATDEKRFV----------IPLAYLKNNVIR 72 (147)
Q Consensus 45 pkG~~~VYVGe~~Rfv----------Vp~~yLnhP~F~ 72 (147)
..|||||.|-.+.+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 5799999998776666 688899988644
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=37.58 E-value=29 Score=24.22 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=28.0
Q ss_pred eEEEEecCceeeeEeccCcCcHHHHHHHHHhHHhcCCCC
Q 032077 48 HFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPS 86 (147)
Q Consensus 48 ~~~VYVGe~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~~ 86 (147)
++.|.-.+.+|+.|++. ..-.+.++|++|=+.|||+.
T Consensus 11 ~v~Vl~~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp CEEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCG
T ss_pred EEEEEcCCCcEEEEEEC--CCCCHHHHHHHHHHHhCCCh
Confidence 34444457899999983 44477889999999999974
No 8
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=34.10 E-value=2.9 Score=34.19 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=19.2
Q ss_pred CCccCCCeEEEEecCceeeeEeccCcCcHHH
Q 032077 41 SSVCEKGHFVVYATDEKRFVIPLAYLKNNVI 71 (147)
Q Consensus 41 ~~~vpkG~~~VYVGe~~RfvVp~~yLnhP~F 71 (147)
+..+|+||+|+.-. -+=.-+=.++|+||.|
T Consensus 207 sl~AP~GHLP~~~~-lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQ-LRGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCC-TTCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCcc-cccHHHHHHHHcCccc
Confidence 34689999998642 1111234568889876
No 9
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=33.15 E-value=4.6 Score=28.57 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=11.1
Q ss_pred ccCcCcHHHHHHHHH
Q 032077 63 LAYLKNNVIRELFKM 77 (147)
Q Consensus 63 ~~yLnhP~F~~LL~~ 77 (147)
-.|||||.|.-|-.-
T Consensus 4 E~YLNHPtFGlLy~V 18 (89)
T 2xko_C 4 ENYLNHPTFGLLYQI 18 (89)
T ss_dssp CCEEEETTTEEEEEE
T ss_pred cccccCCccchhhee
Confidence 359999999876543
No 10
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=30.09 E-value=67 Score=21.30 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=35.3
Q ss_pred ceeeeEeccCc--CcHHHHHHHHHhHHhcCCCCCCCeeec---CcHHHHHHHHHHHhcC
Q 032077 56 EKRFVIPLAYL--KNNVIRELFKMAEDEFGLPSCGPITLP---CDAVFMEYVVSLIQRG 109 (147)
Q Consensus 56 ~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~IP---C~~~~Fe~vl~li~~~ 109 (147)
+++|-+.-..| ..|.|+.++... .++.+.|+ .+...|+.++..+-.+
T Consensus 31 ~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~ 82 (116)
T 2vpk_A 31 EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTG 82 (116)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHS
T ss_pred CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCC
Confidence 45666666665 579999988654 35678887 7899999999988765
No 11
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=27.50 E-value=21 Score=31.35 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=31.3
Q ss_pred CcCCCccCCCeEEEEecC-----------ceeeeEeccCcCcHHHHHHHHHhHHhcCC
Q 032077 38 CRTSSVCEKGHFVVYATD-----------EKRFVIPLAYLKNNVIRELFKMAEDEFGL 84 (147)
Q Consensus 38 ~~~~~~vpkG~~~VYVGe-----------~~RfvVp~~yLnhP~F~~LL~~aeeEfG~ 84 (147)
|..+.+.|++++-+.|-| ++|-.-=+. +.||.||+.|.+.+++.|+
T Consensus 398 ~~~~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 398 IDGPVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp CSSSCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CCCCcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 433445688877777643 244433334 8999999999998888774
No 12
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=26.61 E-value=7 Score=31.77 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=20.6
Q ss_pred CCccCCCeEEEEecC-ceeeeEeccCcCcHHHH
Q 032077 41 SSVCEKGHFVVYATD-EKRFVIPLAYLKNNVIR 72 (147)
Q Consensus 41 ~~~vpkG~~~VYVGe-~~RfvVp~~yLnhP~F~ 72 (147)
+..+|+||+|+.-.= +-| +=-+.|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 346899999986421 223 445789999884
No 13
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=23.27 E-value=79 Score=21.28 Aligned_cols=53 Identities=11% Similarity=0.190 Sum_probs=38.4
Q ss_pred EecCceeeeEeccCc--CcHHHHHHHHHhHHhcCCCCCCCeee-c-CcHHHHHHHHHHHhcC
Q 032077 52 YATDEKRFVIPLAYL--KNNVIRELFKMAEDEFGLPSCGPITL-P-CDAVFMEYVVSLIQRG 109 (147)
Q Consensus 52 YVGe~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~I-P-C~~~~Fe~vl~li~~~ 109 (147)
.|| +++|-+.-..| ..|.|+.++...-.| ....|.| + .+...|+.++..+-.+
T Consensus 35 ~v~-~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg 91 (127)
T 1r29_A 35 VVS-REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTS 91 (127)
T ss_dssp EET-TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHS
T ss_pred EEC-CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCC
Confidence 344 45666666666 689999999765444 4577899 4 6789999999988765
No 14
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=23.05 E-value=99 Score=20.95 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=37.7
Q ss_pred EEEecCceeeeEeccCcC--cHHHHHHHHHhHHhcCCCCCCCeeec--CcHHHHHHHHHHHhcC
Q 032077 50 VVYATDEKRFVIPLAYLK--NNVIRELFKMAEDEFGLPSCGPITLP--CDAVFMEYVVSLIQRG 109 (147)
Q Consensus 50 ~VYVGe~~RfvVp~~yLn--hP~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~li~~~ 109 (147)
.+.|| +++|-+.-..|. .|.|++++... ....|.|| .+...|+.++..+-.+
T Consensus 37 ~l~v~-~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 37 SVVVK-GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEET-TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred EEEEC-CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 33444 456655554443 69999998875 45678996 8899999999988765
No 15
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=22.95 E-value=57 Score=25.70 Aligned_cols=62 Identities=11% Similarity=0.212 Sum_probs=42.9
Q ss_pred CCeEEEEecCceeeeEeccCcC-cH--HHHHHHHHhHHhcC--CCCCCCeeecCcHHHHHHHHHHHhcC
Q 032077 46 KGHFVVYATDEKRFVIPLAYLK-NN--VIRELFKMAEDEFG--LPSCGPITLPCDAVFMEYVVSLIQRG 109 (147)
Q Consensus 46 kG~~~VYVGe~~RfvVp~~yLn-hP--~F~~LL~~aeeEfG--~~~~G~L~IPC~~~~Fe~vl~li~~~ 109 (147)
...+.+-|| +.||.+..+-|. +| .|..|... ..++. .+.+|.+-|-.|...|++||..++.+
T Consensus 11 ~~~V~LNVG-G~~F~Tt~sTL~r~PdS~L~~lfs~-~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG 77 (202)
T 3drx_A 11 SKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHG 77 (202)
T ss_dssp CCEEEEEET-TEEEEEETTGGGSCTTSSTHHHHSC-CCC----BCTTCCEEECSCSTTHHHHHHHHHHS
T ss_pred CCEEEEEEC-CEEEEEeHHHHhCCCcchHHHHhcC-ccccCcccCCCccEEecCChHHHHHHHHHhcCC
Confidence 456667788 688999887775 34 45555321 11232 34678999999999999999999865
No 16
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=22.54 E-value=24 Score=23.43 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=18.5
Q ss_pred cCcCcHHHHHHHHHhHHhcC
Q 032077 64 AYLKNNVIRELFKMAEDEFG 83 (147)
Q Consensus 64 ~yLnhP~F~~LL~~aeeEfG 83 (147)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 17
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=22.51 E-value=9.4 Score=27.95 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=12.2
Q ss_pred CCccCCCeEEEEecCceeeeEeccCcCcHHHHHHHHHh
Q 032077 41 SSVCEKGHFVVYATDEKRFVIPLAYLKNNVIRELFKMA 78 (147)
Q Consensus 41 ~~~vpkG~~~VYVGe~~RfvVp~~yLnhP~F~~LL~~a 78 (147)
+..||+|-.--=+ .+-.|||||.|.-|-.-+
T Consensus 12 ~~~~~~~~~~~~m-------s~E~YLNHPTFGLLyrVc 42 (112)
T 3n5b_B 12 SGLVPRGSHMNPE-------NSETYINHPTWGLLYRIC 42 (112)
T ss_dssp ---------------------CCCEEEETTTEEEEEEE
T ss_pred CCcccCCccCCCc-------chhhhccCCccchheeee
Confidence 4567777543211 123499999998775543
No 18
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=21.95 E-value=38 Score=25.97 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=28.5
Q ss_pred ccCCCeEEEEecCceeeeEeccCcCcHHHHHHHHHhHHhcCCC-CCCCeee
Q 032077 43 VCEKGHFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLP-SCGPITL 92 (147)
Q Consensus 43 ~vpkG~~~VYVGe~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~-~~G~L~I 92 (147)
+.|.---++.|.|+.-++ ++|-.+.-+..++.-|+||||. .+|.|.|
T Consensus 47 dt~~v~A~llvSDgthsv---rclvTrEA~~~sdwEEk~Fgfr~~egrlll 94 (161)
T 2i46_A 47 DTSDVGATLLVSDGTHSV---RCLVTREALDTSDWEEKEFGFRGTEGRLLL 94 (161)
T ss_dssp CCTTSCEEEEEECSSCEE---EEEECHHHHHTSCCTTSCSSCTTCTTEEEE
T ss_pred CCCCceeEEEEcCCceEE---EEEecHHHhhhhhhhhhhcCcccccceEEE
Confidence 444444556688864332 2333455555556667889997 5788765
No 19
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=20.97 E-value=39 Score=23.59 Aligned_cols=10 Identities=30% Similarity=0.684 Sum_probs=8.6
Q ss_pred CeEEEEecCc
Q 032077 47 GHFVVYATDE 56 (147)
Q Consensus 47 G~~~VYVGe~ 56 (147)
=|.+|||||.
T Consensus 22 ~H~gIYvGdg 31 (125)
T 2lkt_A 22 EHWALYIGDG 31 (125)
T ss_dssp CEEEEEEETT
T ss_pred cEEEEEeCCC
Confidence 3899999986
No 20
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=20.72 E-value=1.3e+02 Score=25.16 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=28.7
Q ss_pred EeccCcCcHHHHHHHHHhH---HhcCCCCCCCeeecCcHHHHHHHHHH
Q 032077 61 IPLAYLKNNVIRELFKMAE---DEFGLPSCGPITLPCDAVFMEYVVSL 105 (147)
Q Consensus 61 Vp~~yLnhP~F~~LL~~ae---eEfG~~~~G~L~IPC~~~~Fe~vl~l 105 (147)
+|.+.+++|-|++|++... ..||=.-+-...+|....+=..++.+
T Consensus 32 ~Pf~~ve~~~F~~~l~~l~~~~p~~~~~~~~~~~~ps~~~~~~~i~~~ 79 (534)
T 2bw3_A 32 RPFSAVSGSGFIDMIKFFIKVKAEYGEHVNVEELLPSPITLSRKVTSD 79 (534)
T ss_dssp CCGGGGGCHHHHHHHHHHHHHHHHHCSCBCHHHHSCCHHHHHHHHHHH
T ss_pred CcchhhCCHHHHHHHHHHHhhhhhhccccchhhcCCCcccHHHHHHHH
Confidence 7889999999999999886 45651100012477655555555443
No 21
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=20.16 E-value=28 Score=24.29 Aligned_cols=20 Identities=25% Similarity=0.384 Sum_probs=18.7
Q ss_pred cCcCcHHHHHHHHHhHHhcC
Q 032077 64 AYLKNNVIRELFKMAEDEFG 83 (147)
Q Consensus 64 ~yLnhP~F~~LL~~aeeEfG 83 (147)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
Done!