Query 032077
Match_columns 147
No_of_seqs 131 out of 661
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 14:57:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032077.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032077hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3xa2 a.261.1.1 (A:88-235) G 62.9 0.23 1.7E-05 36.1 -2.8 29 42-71 118-146 (148)
2 d1y6ia2 a.261.1.1 (A:83-233) M 59.7 0.43 3.1E-05 34.7 -1.8 30 42-73 118-148 (151)
3 d2bkfa1 d.15.2.2 (A:1-85) Next 47.7 11 0.00079 24.5 4.0 49 52-102 11-68 (85)
4 d1unda_ a.14.1.1 (A:) Advillin 44.0 3.1 0.00022 23.3 0.6 18 65-82 1-18 (36)
5 d2r85a1 c.30.1.8 (A:1-99) 5-fo 40.7 0.49 3.6E-05 32.4 -3.9 23 41-63 64-88 (99)
6 d2pbza1 c.30.1.8 (A:4-99) 5-fo 32.4 0.84 6.1E-05 31.1 -3.8 23 41-63 59-83 (96)
7 d1fc4a_ c.67.1.4 (A:) 2-amino- 32.0 28 0.002 26.9 4.8 37 51-87 39-80 (401)
8 d1tjya_ c.93.1.1 (A:) AI-2 rec 28.4 25 0.0018 24.4 3.6 32 54-85 1-35 (316)
9 d1yu5x1 a.14.1.1 (X:10-76) Vil 23.7 10 0.00074 23.7 0.6 19 64-82 31-49 (67)
10 d2al3a1 d.15.1.2 (A:10-85) Tet 23.0 36 0.0026 21.4 3.3 37 48-86 2-38 (76)
11 d2r7ka1 c.30.1.8 (A:1-123) 5-f 20.9 1.3 9.6E-05 31.2 -4.7 23 41-63 87-112 (123)
No 1
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=62.85 E-value=0.23 Score=36.12 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=19.3
Q ss_pred CccCCCeEEEEecCceeeeEeccCcCcHHH
Q 032077 42 SVCEKGHFVVYATDEKRFVIPLAYLKNNVI 71 (147)
Q Consensus 42 ~~vpkG~~~VYVGe~~RfvVp~~yLnhP~F 71 (147)
..+|+||+|+. +..+-+-|=-..|+||.|
T Consensus 118 l~AP~GHLP~~-~~lrg~~~~~~~l~h~a~ 146 (148)
T d1z3xa2 118 LSAPRGHLPLT-NQLRGVQVLNALLNHPAW 146 (148)
T ss_dssp TTSCTTCCSCC-CCTTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcC-CccchHHHHHHHhcCccc
Confidence 46899999974 433333444567888876
No 2
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=59.68 E-value=0.43 Score=34.71 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=19.9
Q ss_pred CccCCCeEEEEecC-ceeeeEeccCcCcHHHHH
Q 032077 42 SVCEKGHFVVYATD-EKRFVIPLAYLKNNVIRE 73 (147)
Q Consensus 42 ~~vpkG~~~VYVGe-~~RfvVp~~yLnhP~F~~ 73 (147)
..+|+||+|+...- +-| +--..|+||.|.+
T Consensus 118 l~AP~GHLP~~~~lrG~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 118 LSAPQGHLPLLNQLRGVR--VAESLYRHPVWSQ 148 (151)
T ss_dssp TTSCTTCCSCCCCTTCTH--HHHHHHTSTHHHH
T ss_pred CCCCCCCCCccchhhhHH--HHHHHHcCcchhh
Confidence 46899999986421 122 3345889999864
No 3
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.73 E-value=11 Score=24.51 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=35.5
Q ss_pred EecCceeeeEeccCcCcHHHHHHHHHhHHhcCCC--------C-CCCeeecCcHHHHHHH
Q 032077 52 YATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLP--------S-CGPITLPCDAVFMEYV 102 (147)
Q Consensus 52 YVGe~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~--------~-~G~L~IPC~~~~Fe~v 102 (147)
|-||-.||.++.. +++.|.+|..+-+.-||.+ . +--++|.|+.++=|.+
T Consensus 11 f~~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~~ 68 (85)
T d2bkfa1 11 FKNEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEAL 68 (85)
T ss_dssp ETTEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHH
T ss_pred ECCceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHHH
Confidence 4567899998533 4678999999999988842 2 2347899988765543
No 4
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.99 E-value=3.1 Score=23.31 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=16.7
Q ss_pred CcCcHHHHHHHHHhHHhc
Q 032077 65 YLKNNVIRELFKMAEDEF 82 (147)
Q Consensus 65 yLnhP~F~~LL~~aeeEf 82 (147)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 789999999999999997
No 5
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=40.70 E-value=0.49 Score=32.39 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=17.5
Q ss_pred CCccCCCeEEEEec-Cc-eeeeEec
Q 032077 41 SSVCEKGHFVVYAT-DE-KRFVIPL 63 (147)
Q Consensus 41 ~~~vpkG~~~VYVG-e~-~RfvVp~ 63 (147)
..-||.|.|++|+| |+ +.|-||+
T Consensus 64 ~I~IPhgSfv~Y~G~d~ie~~~VP~ 88 (99)
T d2r85a1 64 AVVVPTGSFVAHLGIELVENMKVPY 88 (99)
T ss_dssp EEECCCTTHHHHHCHHHHHTCCSCB
T ss_pred EEEecCCCEEEEEcHHHHhcCCCCc
Confidence 45689999999999 32 3477774
No 6
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=32.37 E-value=0.84 Score=31.06 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=17.3
Q ss_pred CCccCCCeEEEEec-Cc-eeeeEec
Q 032077 41 SSVCEKGHFVVYAT-DE-KRFVIPL 63 (147)
Q Consensus 41 ~~~vpkG~~~VYVG-e~-~RfvVp~ 63 (147)
..-||.|.|++|+| |+ +.+-||+
T Consensus 59 aI~IPhgSfv~Y~G~~~ie~~~VP~ 83 (96)
T d2pbza1 59 GIVVPHGSFVAYLGIEAIEKAKARF 83 (96)
T ss_dssp SBCCCBTTHHHHSCHHHHHTCCSCC
T ss_pred eEEEcCCCEEEEecHHHHhhCCCCc
Confidence 56799999999999 32 4566664
No 7
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=32.03 E-value=28 Score=26.91 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=27.7
Q ss_pred EEecCceeee--EeccCcC---cHHHHHHHHHhHHhcCCCCC
Q 032077 51 VYATDEKRFV--IPLAYLK---NNVIRELFKMAEDEFGLPSC 87 (147)
Q Consensus 51 VYVGe~~Rfv--Vp~~yLn---hP~F~~LL~~aeeEfG~~~~ 87 (147)
|.+.|+++|+ ..-+||+ ||.+++...++-+.||...-
T Consensus 39 v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~ 80 (401)
T d1fc4a_ 39 ITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMA 80 (401)
T ss_dssp EEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred EEecCCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcc
Confidence 4556778876 3446763 99999999999999997543
No 8
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=28.43 E-value=25 Score=24.37 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=23.4
Q ss_pred cCceeeeEeccCcCcHHHHHHHHHhH---HhcCCC
Q 032077 54 TDEKRFVIPLAYLKNNVIRELFKMAE---DEFGLP 85 (147)
Q Consensus 54 Ge~~RfvVp~~yLnhP~F~~LL~~ae---eEfG~~ 85 (147)
|..+|..+=+..++||.|..+.+-++ +++|++
T Consensus 1 G~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~ 35 (316)
T d1tjya_ 1 GSAERIAFIPKLVGVGFFTSGGNGAQEAGKALGID 35 (316)
T ss_dssp CCCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 44566667778999999999866554 567864
No 9
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=23.69 E-value=10 Score=23.69 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=18.0
Q ss_pred cCcCcHHHHHHHHHhHHhc
Q 032077 64 AYLKNNVIRELFKMAEDEF 82 (147)
Q Consensus 64 ~yLnhP~F~~LL~~aeeEf 82 (147)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 5999999999999999998
No 10
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.98 E-value=36 Score=21.43 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=28.7
Q ss_pred eEEEEecCceeeeEeccCcCcHHHHHHHHHhHHhcCCCC
Q 032077 48 HFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPS 86 (147)
Q Consensus 48 ~~~VYVGe~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~~ 86 (147)
++.|..-..+|..|++. -.-...+.|++|=+.|||+.
T Consensus 2 ~V~Vl~~~~rR~~VKvt--P~t~l~~VL~eaC~k~~~~~ 38 (76)
T d2al3a1 2 AVSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNP 38 (76)
T ss_dssp CEEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCG
T ss_pred cEEEECCCCcEEEEEeC--CCcCHHHHHHHHHHHhCCCh
Confidence 46666677899999875 33367889999999999974
No 11
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=20.92 E-value=1.3 Score=31.22 Aligned_cols=23 Identities=35% Similarity=0.814 Sum_probs=17.7
Q ss_pred CCccCCCeEEEEec-Cc--eeeeEec
Q 032077 41 SSVCEKGHFVVYAT-DE--KRFVIPL 63 (147)
Q Consensus 41 ~~~vpkG~~~VYVG-e~--~RfvVp~ 63 (147)
..-||.|.|++|+| |+ +.|-||+
T Consensus 87 ~I~IPhgSfv~Y~G~~~ie~~~~VP~ 112 (123)
T d2r7ka1 87 SIVVPHGSFIAYCGLDNVENSFLVPM 112 (123)
T ss_dssp EEECCBHHHHHHHCHHHHHHTCCSCB
T ss_pred EEEecCCCeeeeecHHHHHhcCCCCe
Confidence 34589999999999 43 4688884
Done!