Your job contains 1 sequence.
>032079
MPKEETMKSGDDDALFCLTKHIDPNSTSSVINNIETSGYDYEDDRFYEKESKNEGAPNKV
SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKK
TAAEHAAEGALWYLEHLGYFPIRKLKK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032079
(147 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2198898 - symbol:RTL1 "RNAse THREE-like protei... 309 1.3e-27 1
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 271 5.7e-22 1
TAIR|locus:2126111 - symbol:AT4G00420 species:3702 "Arabi... 248 3.9e-21 1
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 236 2.9e-18 1
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 116 1.9e-05 1
>TAIR|locus:2198898 [details] [associations]
symbol:RTL1 "RNAse THREE-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 EMBL:CP002684 GenomeReviews:CT485782_GR
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 EMBL:AC018849
EMBL:AK117343 EMBL:BT005219 IPI:IPI00546074 PIR:G96838
RefSeq:NP_178180.1 UniGene:At.33884 ProteinModelPortal:Q9M8N2
SMR:Q9M8N2 IntAct:Q9M8N2 EnsemblPlants:AT1G80650.1 GeneID:844404
KEGG:ath:AT1G80650 TAIR:At1g80650 eggNOG:NOG249826
HOGENOM:HOG000064708 InParanoid:Q9M8N2 OMA:CASKRWR PhylomeDB:Q9M8N2
ProtClustDB:CLSN2914440 Genevestigator:Q9M8N2 Uniprot:Q9M8N2
Length = 198
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 64/132 (48%), Positives = 86/132 (65%)
Query: 11 DDDALFCLTK-HIDPNSTSSVINNIETSGYDYEDDRFYEKE-SKN-EGAPNKVSAKSKLH 67
+D+A+ + IDPNST S+ + + E+ K SK+ E + SAKS LH
Sbjct: 61 EDNAISSFSNIQIDPNSTRSISLEKKLAPKPDEEHTTTTKPISKDDESKTRRGSAKSVLH 120
Query: 68 EICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIE--SLNTILECFGAPQSKKKTAAEH 125
E+CA+ W+PP ++CC +GPC+ +LFT+KV EI S T+LECFG P+ KKK AAEH
Sbjct: 121 EMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLECFGDPRRKKKAAAEH 180
Query: 126 AAEGALWYLEHL 137
AAEGALWYLEH+
Sbjct: 181 AAEGALWYLEHV 192
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 271 (100.5 bits), Expect = 5.7e-22, P = 5.7e-22
Identities = 53/115 (46%), Positives = 70/115 (60%)
Query: 26 STSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQE 85
S+S VI +DR +K G P+ +AKS LHE C AN WKPP F+CC+E
Sbjct: 1586 SSSYVIRRGLPQAPSKTEDRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEE 1645
Query: 86 EGPCYRKLFTFKVTFEIESL-NTILECFGAPQSKKKTAAEHAAEGALWYLEHLGY 139
EGP + K F +KV E+E N LEC+G ++ KK AAEHAA+ A+W L+H G+
Sbjct: 1646 EGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKHSGF 1700
>TAIR|locus:2126111 [details] [associations]
symbol:AT4G00420 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
EMBL:CP002687 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
IPI:IPI00517962 RefSeq:NP_849275.1 UniGene:At.70232
ProteinModelPortal:F4JHB3 SMR:F4JHB3 PRIDE:F4JHB3
EnsemblPlants:AT4G00420.2 GeneID:828061 KEGG:ath:AT4G00420
OMA:RITVLEC PhylomeDB:F4JHB3 Uniprot:F4JHB3
Length = 190
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 55/120 (45%), Positives = 75/120 (62%)
Query: 22 IDPNSTSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFD 81
++PN T + N S + D R + E E + SAKS+L+ +C+ HWK P ++
Sbjct: 49 MEPNFT---LENTLVSEPE-ADLRPHTTEPTTEEETQRSSAKSQLYNLCSVRHWKAPLYE 104
Query: 82 CCQEEGPCYRKLFTFKVTFEI--ESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGY 139
E GPC+ K+FT KVT E+ +S T+LECFG PQ KKK AAE AAE ALWYL+++GY
Sbjct: 105 YIAE-GPCHMKIFTGKVTVEMKEDSRITVLECFGNPQYKKKIAAEQAAEAALWYLKNVGY 163
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 236 (88.1 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 47/97 (48%), Positives = 64/97 (65%)
Query: 48 EKESKN--EGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESL 105
EK +K G +A+S L E+CAAN+WKPP F C+EEGP + + FT+KV EI+
Sbjct: 1554 EKSNKKVYHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGA 1613
Query: 106 N-TILECFGAPQSKKKTAAEHAAEGALWYLEHLGYFP 141
+ T+LEC + +KK A EHAA+GALW L+ LG+ P
Sbjct: 1614 SATLLECHSDGKLQKKAAQEHAAQGALWCLKQLGHLP 1650
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 116 (45.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/86 (32%), Positives = 39/86 (45%)
Query: 42 EDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
ED+R + E KN GA ++ + L++IC W P + C E GP + K F + V
Sbjct: 1783 EDER--DGEKKN-GA--QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVN 1837
Query: 102 IESLNTILECFGAPQSKKKTAAEHAA 127
EC G P K A + AA
Sbjct: 1838 TSDRGWTDECIGEPMPSVKKAKDSAA 1863
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 147 147 0.00091 103 3 11 23 0.38 32
30 0.50 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 590 (63 KB)
Total size of DFA: 166 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.73u 0.16s 14.89t Elapsed: 00:00:00
Total cpu time: 14.73u 0.16s 14.89t Elapsed: 00:00:00
Start: Fri May 10 14:20:18 2013 End: Fri May 10 14:20:18 2013