BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032079
         (147 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LRS|A Chain A, The Second Dsrbd Domain From A. Thaliana Dicer-like 1
          Length = 71

 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%)

Query: 67  HEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHA 126
           ++IC   +W  PS+ C +E GP + K FTF V           EC G P    K A + A
Sbjct: 1   NDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSA 60

Query: 127 A 127
           A
Sbjct: 61  A 61


>pdb|3ADL|A Chain A, Structure Of Trbp2 And Its Molecule Implications For Mirna
           Processing
          Length = 88

 Score = 33.9 bits (76), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 66  LHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
           L E+     W+ P +   QE GP +RK FT     E
Sbjct: 21  LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE 56


>pdb|2CPN|A Chain A, Solution Structure Of The Second Dsrbd Of Tar Rna-Binding
           Protein 2
          Length = 89

 Score = 33.1 bits (74), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 66  LHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
           L E+     W+ P +   QE GP +RK FT     E
Sbjct: 22  LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE 57


>pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed
          With Dsrna: Molecular Basis Of Double-Stranded
          Rna-Protein Interactions
 pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed
          With Dsrna: Molecular Basis Of Double-Stranded
          Rna-Protein Interactions
          Length = 69

 Score = 30.0 bits (66), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 66 LHEICAANHWKPPSFDCCQEEGPCYRKLFTF 96
          L E+     W+ P +   QE GP +++ FT 
Sbjct: 6  LQELAVQKGWRLPEYTVAQESGPPHKREFTI 36


>pdb|3O3M|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
 pdb|3O3M|D Chain D, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
 pdb|3O3N|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
           Its Substrate (R)-2-Hydroxyisocaproyl-Coa
 pdb|3O3N|D Chain D, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
           Its Substrate (R)-2-Hydroxyisocaproyl-Coa
 pdb|3O3O|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
           (R)-2- Hydroxyisocaproate
          Length = 385

 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 4   EETMKSGDDDALFCLTKHIDPNSTS--SVINNIETSGYDYEDDRFYEKESKNEGAPNKVS 61
           +E  K   D  +FC+ K  DP       V  +IE SG         ++   NE A  ++ 
Sbjct: 307 DEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDIEDSGIPTLYVEIDQQTQNNEQARTRIQ 366

Query: 62  AKSKLHEICAANHWKPPSFD 81
             +++  + +A  W  P F+
Sbjct: 367 TFAEMMSLASA--WSHPQFE 384


>pdb|1Y7J|A Chain A, Nmr Structure Family Of Human Agouti Signalling Protein
           (80- 132: Q115y, S124y)
 pdb|1Y7K|A Chain A, Nmr Structure Family Of Human Agouti Signalling Protein
           (80- 132: Q115y, S124y)
          Length = 53

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 60  VSAKSKLHEICAA--NHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNT 107
           V  ++ L   C A  N  KPP+  CC     CY + F       + SLN 
Sbjct: 4   VRPRTPLSAPCVATRNSCKPPAPACCDPCASCYCRFFRSACYCRVLSLNC 53


>pdb|2L9P|A Chain A, Solution Nmr Structure Of Q5hli9 From Staphylococcus
           Epidermidis, Northeast Structural Genomics Consortium
           Target Ser147
          Length = 164

 Score = 27.3 bits (59), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 114 APQSKKKTAAEHAAEGALWYLEHLGYFPIRKLKK 147
           APQ    T AE+    A +Y+E+L YF   K +K
Sbjct: 63  APQMISYTIAEYLQVDAPYYIEYLDYFATSKGEK 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,684,796
Number of Sequences: 62578
Number of extensions: 180938
Number of successful extensions: 238
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 16
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)