BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032079
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M8N2|RTL1_ARATH Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana GN=RTL1 PE=2
SV=1
Length = 198
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 86/136 (63%), Gaps = 5/136 (3%)
Query: 11 DDDALFCLTK-HIDPNSTSSV-INNIETSGYDYEDDRFYEKESKN-EGAPNKVSAKSKLH 67
+D+A+ + IDPNST S+ + D E + SK+ E + SAKS LH
Sbjct: 61 EDNAISSFSNIQIDPNSTRSISLEKKLAPKPDEEHTTTTKPISKDDESKTRRGSAKSVLH 120
Query: 68 EICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIE--SLNTILECFGAPQSKKKTAAEH 125
E+CA+ W+PP ++CC +GPC+ +LFT+KV EI S T+LECFG P+ KKK AAEH
Sbjct: 121 EMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLECFGDPRRKKKAAAEH 180
Query: 126 AAEGALWYLEHLGYFP 141
AAEGALWYLEH+ P
Sbjct: 181 AAEGALWYLEHVKTKP 196
>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica
GN=DCL4 PE=2 SV=1
Length = 1657
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLN-TILECFGAPQSKK 119
+A+S L E+CAAN+WKPP F C+EEGP + + FT+KV EI+ + T+LEC + +K
Sbjct: 1569 TARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQK 1628
Query: 120 KTAAEHAAEGALWYLEHLGYFP 141
K A EHAA+GALW L+ LG+ P
Sbjct: 1629 KAAQEHAAQGALWCLKQLGHLP 1650
>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2
Length = 1702
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 26 STSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQE 85
S+S VI +DR +K G P+ +AKS LHE C AN WKPP F+CC+E
Sbjct: 1586 SSSYVIRRGLPQAPSKTEDRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEE 1645
Query: 86 EGPCYRKLFTFKVTFEIESL-NTILECFGAPQSKKKTAAEHAAEGALWYLEHLGYF 140
EGP + K F +KV E+E N LEC+G ++ KK AAEHAA+ A+W L+H G+
Sbjct: 1646 EGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKHSGFL 1701
>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1
SV=2
Length = 1909
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 48 EKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNT 107
E E+ N+ ++ + L++IC +W PS+ C +E GP + K FTF V
Sbjct: 1818 ENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGW 1877
Query: 108 ILECFGAPQSKKKTAAEHAA 127
EC G P K A + AA
Sbjct: 1878 TDECIGEPMPSVKKAKDSAA 1897
>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica
GN=DCL1 PE=3 SV=1
Length = 1883
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 42 EDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
ED+R + E KN GA ++ + L++IC W P + C E GP + K F + V
Sbjct: 1783 EDER--DGEKKN-GA--QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVN 1837
Query: 102 IESLNTILECFGAPQSKKKTAAEHAA 127
EC G P K A + AA
Sbjct: 1838 TSDRGWTDECIGEPMPSVKKAKDSAA 1863
>sp|Q6ANV0|RNC_DESPS Ribonuclease 3 OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnc PE=3 SV=1
Length = 241
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 62 AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKT 121
AKS+L EI H + PS+ EEGP ++K FT V F E L T G SKK+
Sbjct: 172 AKSRLQEILQEKHNEGPSYRLDNEEGPSHKKRFTISVLFRDEVLGT-----GEAGSKKEA 226
Query: 122 AAEHAA 127
AA
Sbjct: 227 EQRGAA 232
>sp|Q9FKF0|RTL3_ARATH Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana GN=RTL3 PE=2
SV=1
Length = 957
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKK 119
V+ + +L EIC N W P F +E+GP F V EI ++ G +SKK
Sbjct: 306 VNGRGELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPNIEGTFHMKGDIKSKK 365
Query: 120 KTAAEHAAEGALWYLE-HLGYFPIRKLKK 147
K A A + LE L I L+K
Sbjct: 366 KQAENSLAYHMIRALESSLVSLVISNLQK 394
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%)
Query: 63 KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
K KL EICA N W P F +E G + V EI ++ G + KK A
Sbjct: 839 KGKLFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNIEGTFHIKGDAKPTKKEA 898
Query: 123 AEHAAEGALWYLE 135
+A+ + LE
Sbjct: 899 ENSSADHMIRALE 911
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 40 DYEDDRFYEKESKNEGAP-NKVSAKSK--------LHEICAANHWKPPSFDCCQEEGPCY 90
D +D+ Y+ E P N VS K + L EIC N+W P + G
Sbjct: 416 DKREDKLYDLLPGMELTPMNTVSLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQ 475
Query: 91 RKLFTFKVTF-EIESLNTILECFGAPQ------SKKKTAAEHAAE 128
R+LF +KVT + S N + F P+ K+ AAEH +
Sbjct: 476 RQLFLYKVTIPALASQNPAIHPFIPPKLSAYVDEAKRYAAEHTLQ 520
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 40 DYEDDRFYEKESKNEGAP-NKVSAKSK--------LHEICAANHWKPPSFDCCQEEGPCY 90
D D+ Y+ E P N +S K + L EIC N+W P + G
Sbjct: 415 DKRQDKLYDLLPGMELTPMNTISLKPQGVKLAPQILEEICQKNNWGQPVYQLHSAIGQDQ 474
Query: 91 RKLFTFKVTF-EIESLNTILECFGAPQ------SKKKTAAEHAAE 128
R+LF +KVT + S N + F P+ K+ AAEH +
Sbjct: 475 RQLFLYKVTIPALASQNPAIHPFTPPKLSAYVDEAKRYAAEHTLQ 519
>sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4
Length = 2426
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 48 EKESKNEGAPNK-VSAK---SKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKV 98
+K S N A K +S K S L EIC W+PP F + GP +RK F F+V
Sbjct: 2354 QKRSGNFSAAMKDLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRV 2408
>sp|Q9QX47|SON_MOUSE Protein SON OS=Mus musculus GN=Son PE=1 SV=2
Length = 2444
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 48 EKESKNEGAPNK-VSAK---SKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKV 98
+K S N A K +S K S L EIC W+PP F + GP +RK F F+V
Sbjct: 2372 QKRSGNFSAAMKDLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRV 2426
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 40 DYEDDRFYEKESKNEGAP-NKVSAKSK--------LHEICAANHWKPPSFDCCQEEGPCY 90
D +D+ Y+ E P N V+ K + L EIC N+W P + G
Sbjct: 416 DKREDKLYDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQ 475
Query: 91 RKLFTFKVTF-EIESLNTILECFGAPQSKK--KTAAEHAAEGALWYL 134
R+LF +K+T + S N + F P+ A +AAE L L
Sbjct: 476 RQLFLYKITIPALASQNPAIHPFTPPKLSAFVDEAKTYAAEYTLQTL 522
>sp|P44441|RNC_HAEIN Ribonuclease 3 OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnc PE=3 SV=1
Length = 227
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQS 117
N+ AK++L E H P+++ +G + ++FT K +++S I F A S
Sbjct: 150 NQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAHCQIFTVKC--KVKSAEKIDRTFVAKGS 207
Query: 118 KKKTAAEHAAEGALWYLE 135
++ A + AAE L L+
Sbjct: 208 SRRKAEQAAAEQILKELD 225
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 40 DYEDDRFYEKESKNEGAP-NKVSAKSK--------LHEICAANHWKPPSFDCCQEEGPCY 90
D +D+ Y+ E P N V+ K + L EIC N+W P + G
Sbjct: 408 DKREDKLYDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQ 467
Query: 91 RKLFTFKVTF-EIESLNTILECFGAPQ--SKKKTAAEHAAEGALWYL 134
R+LF +K+T + S N + F P+ + A +AAE L L
Sbjct: 468 RQLFLYKITIPALASQNPAIHPFTPPKLSAYVDEAKTYAAEYTLQTL 514
>sp|A6QCJ0|RNC_SULNB Ribonuclease 3 OS=Sulfurovum sp. (strain NBC37-1) GN=rnc PE=3 SV=1
Length = 223
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 63 KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
K+ L E+ A H P ++ GP ++K F VT + +++ T A KK A
Sbjct: 156 KTALQELTQATHAVTPGYEMLGSSGPDHKKEFEIAVTLDNKTIAT------AKGKSKKDA 209
Query: 123 AEHAAEGALWYLE 135
+ AA+ AL L+
Sbjct: 210 QQKAAKIALEALK 222
>sp|Q4SS66|TRBP2_TETNG RISC-loading complex subunit tarbp2 OS=Tetraodon nigroviridis
GN=tarbp2 PE=3 SV=1
Length = 345
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 37 SGYDYEDDRFYEKESKNEGAPNKVSAKSK-------------LHEICAANHWKPPSFDCC 83
+G+ D F E + +G ++ K+ L E+ W+ P +
Sbjct: 103 AGFSVGVDGFVEVDVSTDGDSSQSEMKTSGNSQQTECNPVGALQELVVQKGWRLPEYTVT 162
Query: 84 QEEGPCYRKLFTFKVTFE 101
QE GP +RK FT E
Sbjct: 163 QESGPAHRKEFTMTCRVE 180
>sp|A7GRH9|RNC_BACCN Ribonuclease 3 OS=Bacillus cereus subsp. cytotoxis (strain NVH
391-98) GN=rnc PE=3 SV=1
Length = 245
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN++
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNSVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|A5UFI8|RNC_HAEIG Ribonuclease 3 OS=Haemophilus influenzae (strain PittGG) GN=rnc
PE=3 SV=1
Length = 227
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQS 117
N+ AK++L E H P+++ +G + ++FT V +++S I F A S
Sbjct: 150 NQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAHCQIFT--VECKVKSAGKIDRTFVAKGS 207
Query: 118 KKKTAAEHAAEGALWYLE 135
++ A + AAE L L+
Sbjct: 208 SRRKAEQAAAEQILKELD 225
>sp|A5UBC4|RNC_HAEIE Ribonuclease 3 OS=Haemophilus influenzae (strain PittEE) GN=rnc
PE=3 SV=1
Length = 227
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQS 117
N+ AK++L E H P+++ +G + ++FT V +++S I F A S
Sbjct: 150 NQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAHCQIFT--VECKVKSAGKIDRTFVAKGS 207
Query: 118 KKKTAAEHAAEGALWYLE 135
++ A + AAE L L+
Sbjct: 208 SRRKAEQAAAEQILKELD 225
>sp|Q4QPN0|RNC_HAEI8 Ribonuclease 3 OS=Haemophilus influenzae (strain 86-028NP) GN=rnc
PE=3 SV=1
Length = 227
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQS 117
N+ AK++L E H P+++ +G + ++FT V +++S I F A S
Sbjct: 150 NQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAHCQIFT--VECKVKSAGKIDRTFVAKGS 207
Query: 118 KKKTAAEHAAEGALWYLE 135
++ A + AAE L L+
Sbjct: 208 SRRKAEQAAAEQILKELD 225
>sp|Q819V8|RNC_BACCR Ribonuclease 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=rnc PE=3 SV=1
Length = 245
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|B7HDX2|RNC_BACC4 Ribonuclease 3 OS=Bacillus cereus (strain B4264) GN=rnc PE=3 SV=1
Length = 245
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|B7IUK8|RNC_BACC2 Ribonuclease 3 OS=Bacillus cereus (strain G9842) GN=rnc PE=3 SV=1
Length = 245
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|Q6HEW6|RNC_BACHK Ribonuclease 3 OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=rnc PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|C1EP73|RNC_BACC3 Ribonuclease 3 OS=Bacillus cereus (strain 03BB102) GN=rnc PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|B7JJT6|RNC_BACC0 Ribonuclease 3 OS=Bacillus cereus (strain AH820) GN=rnc PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|Q81WI8|RNC_BACAN Ribonuclease 3 OS=Bacillus anthracis GN=rnc PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|C3L778|RNC_BACAC Ribonuclease 3 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495)
GN=rnc PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|C3P5Q0|RNC_BACAA Ribonuclease 3 OS=Bacillus anthracis (strain A0248) GN=rnc PE=3
SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|B9IVD8|RNC_BACCQ Ribonuclease 3 OS=Bacillus cereus (strain Q1) GN=rnc PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|B7HLI2|RNC_BACC7 Ribonuclease 3 OS=Bacillus cereus (strain AH187) GN=rnc PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|Q732M1|RNC_BACC1 Ribonuclease 3 OS=Bacillus cereus (strain ATCC 10987) GN=rnc PE=3
SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|Q636H7|RNC_BACCZ Ribonuclease 3 OS=Bacillus cereus (strain ZK / E33L) GN=rnc PE=3
SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT LN +
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVT-----LNNVALG 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|Q7SXR1|TRBP2_DANRE RISC-loading complex subunit tarbp2 OS=Danio rerio GN=tarbp2 PE=2
SV=1
Length = 346
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 66 LHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
L E+ W+ P + QE GP +RK FT E
Sbjct: 144 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE 179
>sp|Q5BJ52|TRBP2_XENTR RISC-loading complex subunit tarbp2 OS=Xenopus tropicalis GN=tarbp2
PE=2 SV=2
Length = 351
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 66 LHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
L E+ W+ P + QE GP +RK FT E
Sbjct: 155 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE 190
>sp|Q6GPZ1|TRBP2_XENLA RISC-loading complex subunit tarbp2 OS=Xenopus laevis GN=tarbp2
PE=2 SV=2
Length = 351
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 66 LHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
L E+ W+ P + QE GP +RK FT E
Sbjct: 155 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE 190
>sp|A9VT87|RNC_BACWK Ribonuclease 3 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rnc
PE=3 SV=1
Length = 245
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 NEGAPNKV-SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILEC 111
NEGA + V KS+L E+ + + QE+GP + + F +VT E+L
Sbjct: 165 NEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGPAHNREFVSRVTLNNEALG----- 219
Query: 112 FGAPQSKK 119
G+ +SKK
Sbjct: 220 LGSGKSKK 227
>sp|Q3A4Q8|RNC_PELCD Ribonuclease 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=rnc PE=3 SV=1
Length = 232
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKK 119
V K++L E A P + +GP +++ ++ + F C G Q +
Sbjct: 162 VDYKTRLQERLQARFGDVPQYVLIHADGPPHQRSYSVEAHFRGS-------CIGQGQGRS 214
Query: 120 KTAAEHAA-EGALWYLE 135
K +AE AA + AL YLE
Sbjct: 215 KKSAEQAAAKQALEYLE 231
>sp|Q4L5T5|RNC_STAHJ Ribonuclease 3 OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=rnc PE=3 SV=1
Length = 245
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKK 119
V K++ E + + ++ +EEGP + +LFT +V E E++ T G ++KK
Sbjct: 171 VDFKTQFQEYVHSQNRGDVTYRLIKEEGPAHHRLFTSEVILENEAVAT-----GQGKTKK 225
Query: 120 KTAAEHAAEGA 130
++ + AAE A
Sbjct: 226 ES-EQKAAESA 235
>sp|Q5UQT7|RNC_MIMIV Probable ribonuclease 3 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R343 PE=3 SV=1
Length = 538
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 53 NEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECF 112
N+ A N+ + K + ++ N W P + +EEGP + K+FT + L L
Sbjct: 460 NQIAENETNYKDLILQLYNKNKWGHPVYKILKEEGPDHCKIFTMGLY-----LGNKLMGI 514
Query: 113 GAPQSKKKTAAEHAAEGALW 132
G SKKK AE A ++
Sbjct: 515 GKASSKKK--AEQIASKKMY 532
>sp|Q0IIG6|TRBP2_BOVIN RISC-loading complex subunit TARBP2 OS=Bos taurus GN=TARBP2 PE=2
SV=2
Length = 366
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
N V A L E+ W+ P + QE GP +RK FT E
Sbjct: 159 NPVGA---LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE 199
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes
octocarinatus GN=RPA2 PE=3 SV=2
Length = 1166
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 24 PNSTSSVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAAN 73
P+ T++V+ I +GYD ED K S G + V KS H++ +N
Sbjct: 737 PSGTNAVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKSYTHDLNESN 786
>sp|Q0AYW0|RNC_SYNWW Ribonuclease 3 OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=rnc PE=3 SV=1
Length = 233
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 63 KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
KSKL E+ A + S+ +E GP + K+F V + + L T G +SKK+ A
Sbjct: 163 KSKLQELVQARDKENVSYAIIEESGPAHAKVFVAGVYYREQLLAT-----GEGKSKKE-A 216
Query: 123 AEHAAEGAL 131
+ AA+ L
Sbjct: 217 EQKAAQKVL 225
>sp|Q15633|TRBP2_HUMAN RISC-loading complex subunit TARBP2 OS=Homo sapiens GN=TARBP2 PE=1
SV=3
Length = 366
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
N V A L E+ W+ P + QE GP +RK FT E
Sbjct: 159 NPVGA---LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE 199
>sp|P97473|TRBP2_MOUSE RISC-loading complex subunit TARBP2 OS=Mus musculus GN=Tarbp2 PE=1
SV=2
Length = 365
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 66 LHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
L E+ W+ P + QE GP +RK FT E
Sbjct: 163 LQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE 198
>sp|Q2NJY3|RNC_AYWBP Ribonuclease 3 OS=Aster yellows witches'-broom phytoplasma (strain
AYWB) GN=rnc PE=3 SV=1
Length = 237
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKK 119
+ K++L EI + K + QE+GP + K F +V E L T S K
Sbjct: 153 IDFKTQLQEIVQSEK-KTIQYKIVQEQGPAHSKNFVAEVYLEKNLLGT------GEGSTK 205
Query: 120 KTAAEHAAEGAL 131
K+A + AA+ AL
Sbjct: 206 KSAEQKAAQQAL 217
>sp|Q3SWU0|TRBP2_RAT RISC-loading complex subunit TARBP2 OS=Rattus norvegicus GN=Tarbp2
PE=2 SV=1
Length = 365
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFE 101
N V A L E+ W+ P + QE GP +RK FT E
Sbjct: 158 NPVGA---LQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE 198
>sp|Q9Z5U2|RNC_ZYMMO Ribonuclease 3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=rnc PE=3 SV=3
Length = 246
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 63 KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTF 100
KS L E AA++ +PP ++ GP + FT +V+
Sbjct: 179 KSALQEWAAAHNRRPPVYEIVSRTGPQHNPCFTIQVSI 216
>sp|Q9STK5|PP269_ARATH Pentatricopeptide repeat-containing protein At3g48250,
chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2
SV=1
Length = 621
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 24 PNSTS---SVINNIETSGYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSF 80
PNS + SV++ ++T+GYD + D Y K S+ ++ KL+E +KP
Sbjct: 276 PNSVAEFWSVVDEMKTAGYDMDLDT-YIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQ 334
Query: 81 DC 82
DC
Sbjct: 335 DC 336
>sp|Q3B6L3|RNC_PELLD Ribonuclease 3 OS=Pelodictyon luteolum (strain DSM 273) GN=rnc PE=3
SV=1
Length = 276
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 63 KSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTA 122
KS+L E ++ PP + EEG + K FT +V+ L +KK A
Sbjct: 190 KSRLIEHTQSHQLPPPVYTVLSEEGAEHEKTFTIEVSCNGRRLGR------GTALRKKDA 243
Query: 123 AEHAAEGALWYLEH 136
+ AAE A+ LE
Sbjct: 244 EQLAAEEAMGALER 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,338,311
Number of Sequences: 539616
Number of extensions: 2226227
Number of successful extensions: 4133
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 4092
Number of HSP's gapped (non-prelim): 91
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)