Query 032079
Match_columns 147
No_of_seqs 120 out of 1084
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02701 ORF020 dsRNA-binding 99.8 7.3E-20 1.6E-24 146.5 9.6 84 44-137 95-178 (183)
2 cd00048 DSRM Double-stranded R 99.8 1.9E-18 4.1E-23 112.1 9.2 68 61-134 1-68 (68)
3 PF14709 DND1_DSRM: double str 99.8 3.9E-18 8.6E-23 119.8 9.0 75 60-134 1-79 (80)
4 PRK12371 ribonuclease III; Rev 99.8 3.4E-18 7.5E-23 140.4 9.6 73 58-136 159-231 (235)
5 smart00358 DSRM Double-strande 99.8 6.8E-18 1.5E-22 110.0 8.8 66 62-134 1-66 (67)
6 PHA03103 double-strand RNA-bin 99.8 4.6E-18 9.9E-23 136.3 9.3 73 56-136 105-177 (183)
7 COG0571 Rnc dsRNA-specific rib 99.7 1.9E-17 4E-22 136.9 9.5 76 55-136 156-231 (235)
8 PRK14718 ribonuclease III; Pro 99.7 9.2E-17 2E-21 143.0 9.7 72 58-135 149-221 (467)
9 PRK12372 ribonuclease III; Rev 99.7 3.3E-16 7.1E-21 138.2 9.6 73 58-136 149-222 (413)
10 PF00035 dsrm: Double-stranded 99.7 6.3E-16 1.4E-20 101.3 8.5 66 62-134 1-67 (67)
11 PRK00102 rnc ribonuclease III; 99.6 3.9E-15 8.4E-20 119.2 9.5 75 56-136 154-228 (229)
12 TIGR02191 RNaseIII ribonucleas 99.6 1.8E-14 4E-19 114.3 8.9 71 58-134 150-220 (220)
13 KOG3732 Staufen and related do 99.5 1.1E-13 2.3E-18 119.5 8.7 72 58-136 140-211 (339)
14 KOG3732 Staufen and related do 99.5 3.5E-13 7.6E-18 116.4 10.2 73 60-140 38-110 (339)
15 KOG1817 Ribonuclease [RNA proc 98.5 2.6E-07 5.6E-12 83.1 8.1 73 57-135 424-502 (533)
16 KOG2777 tRNA-specific adenosin 98.4 1.4E-06 3E-11 79.9 8.1 67 59-137 89-155 (542)
17 KOG3769 Ribonuclease III domai 97.8 2.1E-05 4.5E-10 68.1 3.9 90 39-134 211-301 (333)
18 PF03368 Dicer_dimer: Dicer di 97.6 0.0002 4.3E-09 51.0 6.4 70 63-140 2-77 (90)
19 KOG4334 Uncharacterized conser 97.3 0.00027 5.9E-09 64.8 4.0 68 59-134 374-441 (650)
20 KOG0921 Dosage compensation co 97.0 0.0015 3.3E-08 63.8 6.0 80 60-146 1-80 (1282)
21 PF14954 LIX1: Limb expression 92.6 0.41 8.8E-06 40.3 6.3 72 56-133 17-94 (252)
22 KOG2334 tRNA-dihydrouridine sy 91.5 0.087 1.9E-06 47.9 1.2 65 60-133 375-439 (477)
23 KOG3792 Transcription factor N 89.1 0.24 5.3E-06 47.5 2.1 66 61-138 371-442 (816)
24 KOG2777 tRNA-specific adenosin 87.1 0.44 9.5E-06 44.3 2.4 51 74-136 6-56 (542)
25 KOG0701 dsRNA-specific nucleas 82.8 1.1 2.4E-05 46.5 3.1 44 55-98 1509-1552(1606)
26 KOG3792 Transcription factor N 82.4 0.91 2E-05 43.7 2.3 49 79-134 520-569 (816)
27 KOG0921 Dosage compensation co 52.6 6.6 0.00014 39.5 1.0 80 54-136 161-240 (1282)
28 PF13356 DUF4102: Domain of un 40.4 1.2E+02 0.0026 20.7 5.9 54 88-145 31-84 (89)
29 PF14657 Integrase_AP2: AP2-li 38.4 45 0.00098 20.4 2.9 19 116-135 24-42 (46)
30 KOG4334 Uncharacterized conser 31.6 2E+02 0.0044 27.4 7.1 64 61-135 491-557 (650)
31 PF08727 P3A: Poliovirus 3A pr 29.3 36 0.00077 22.9 1.4 15 65-79 31-45 (57)
32 COG5515 Uncharacterized conser 27.1 18 0.00039 25.0 -0.3 10 9-18 10-19 (70)
33 PF09039 HTH_Tnp_Mu_2: Mu DNA 23.6 36 0.00078 25.1 0.7 27 57-83 49-75 (108)
34 KOG1881 Anion exchanger adapto 21.9 1E+02 0.0022 30.3 3.5 77 58-140 347-425 (793)
35 TIGR01648 hnRNP-R-Q heterogene 21.8 65 0.0014 30.4 2.2 35 62-102 437-471 (578)
No 1
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.81 E-value=7.3e-20 Score=146.54 Aligned_cols=84 Identities=21% Similarity=0.164 Sum_probs=71.9
Q ss_pred cccccccccCCCCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHH
Q 032079 44 DRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAA 123 (147)
Q Consensus 44 ~~~~~~~~~~~~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AE 123 (147)
|-+|...++ .....||||+||||||++++.+ .|+++.++||+|.+.|++.|+|+|..++.+ . |+|||+||
T Consensus 95 d~~~~~~i~---~~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G---~---G~SKKeAE 164 (183)
T PHA02701 95 DVLTVSAVM---RLKTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA---S---GCSKKLAR 164 (183)
T ss_pred ccccHHHhh---cCCCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE---E---eCCHHHHH
Confidence 445555555 4446799999999999998877 899999999999999999999999998753 4 49999999
Q ss_pred HHHHHHHHHHHHhC
Q 032079 124 EHAAEGALWYLEHL 137 (147)
Q Consensus 124 q~AA~~AL~~L~~~ 137 (147)
|+||+.||..|...
T Consensus 165 Q~AAk~AL~~L~~~ 178 (183)
T PHA02701 165 HAACADALTILINN 178 (183)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998653
No 2
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.78 E-value=1.9e-18 Score=112.13 Aligned_cols=68 Identities=35% Similarity=0.398 Sum_probs=60.9
Q ss_pred ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079 61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L 134 (147)
|||+.|+||||+++|..|.|+++...|++|.+.|+|.|.|++..++. | .|+|||+|++.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-----g-~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGE-----G-EGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEE-----e-ecCCHHHHHHHHHHHHHHhC
Confidence 69999999999999999999998889999999999999999966553 3 24899999999999999865
No 3
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.76 E-value=3.9e-18 Score=119.82 Aligned_cols=75 Identities=45% Similarity=0.700 Sum_probs=66.0
Q ss_pred CChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEecc--ccceeec--CCCCCHHHHHHHHHHHHHHHH
Q 032079 60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLN--TILECFG--APQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 60 ~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~--~~~~~~G--~~g~SKK~AEq~AA~~AL~~L 134 (147)
+++++.|+|+|++++|+.|.|+++.+.||+|.+.|+++|.|++..+. ..+.+.+ ...++||+|++.||+.||+.|
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999989999999999999999988773 2334444 567999999999999999887
No 4
>PRK12371 ribonuclease III; Reviewed
Probab=99.76 E-value=3.4e-18 Score=140.36 Aligned_cols=73 Identities=26% Similarity=0.229 Sum_probs=66.1
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
...||||+||||||++++..|.|++++++||+|.+.|+|.|+|+|..++. | .|+|||+||+.||+.||+.|..
T Consensus 159 ~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~-----g-~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 159 ARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPET-----G-EGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEE-----e-eeCCHHHHHHHHHHHHHHHhhh
Confidence 45699999999999998999999999999999999999999999988764 3 3599999999999999998864
No 5
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.75 E-value=6.8e-18 Score=109.96 Aligned_cols=66 Identities=38% Similarity=0.464 Sum_probs=59.8
Q ss_pred hhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079 62 AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 62 ~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L 134 (147)
||+.|+||||+++| .|.|+++...|++|.+.|+|.|.|++..++. | .|.|||+|++.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-----g-~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGE-----G-EGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEE-----e-ccCCHHHHHHHHHHHHHHhc
Confidence 68999999999999 8999998888999999999999999987653 4 35999999999999999877
No 6
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.75 E-value=4.6e-18 Score=136.29 Aligned_cols=73 Identities=19% Similarity=0.121 Sum_probs=63.1
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 56 APNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 56 ~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
.-...||||+||||||++++.. |.++.++||+|.+.|++.|+|+|..++++ . |+|||+|||+||+.||..|.
T Consensus 105 d~K~kNpKS~LQE~~Qk~~~~~--y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G---~---G~SKKeAEQ~AAk~AL~~L~ 176 (183)
T PHA03103 105 SWKDKNPCTVINEYCQITSRDW--SINITSSGPSHSPTFTASVIISGIKFKPA---I---GSTKKEAKNNAAKLAMDKIL 176 (183)
T ss_pred ccccCChhHHHHHHHHHhCCCe--EEEEEeeCCCCCceEEEEEEECCEEEEEe---e---eCCHHHHHHHHHHHHHHHHH
Confidence 3346688899999999998763 77778899999999999999999998753 3 49999999999999999986
Q ss_pred h
Q 032079 136 H 136 (147)
Q Consensus 136 ~ 136 (147)
.
T Consensus 177 ~ 177 (183)
T PHA03103 177 N 177 (183)
T ss_pred h
Confidence 4
No 7
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.72 E-value=1.9e-17 Score=136.89 Aligned_cols=76 Identities=33% Similarity=0.375 Sum_probs=68.4
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079 55 GAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 55 ~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L 134 (147)
......|||++||||||++++.+|.|+++.++||+|.+.|++.|.|++..++. | .|+|||+|||.||+.||..|
T Consensus 156 ~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~-----G-~G~skk~AEq~AA~~al~~l 229 (235)
T COG0571 156 AGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGT-----G-KGRSKKEAEQAAAEQALKKL 229 (235)
T ss_pred ccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEE-----e-cccCHHHHHHHHHHHHHHHh
Confidence 34445899999999999999999999999999999999999999999988765 4 35999999999999999988
Q ss_pred Hh
Q 032079 135 EH 136 (147)
Q Consensus 135 ~~ 136 (147)
..
T Consensus 230 ~~ 231 (235)
T COG0571 230 GV 231 (235)
T ss_pred cc
Confidence 64
No 8
>PRK14718 ribonuclease III; Provisional
Probab=99.69 E-value=9.2e-17 Score=143.05 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=65.0
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEec-cccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESL-NTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~-~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
...||||+||||||++++.+|.|+++.++||+|.+.|++.|+|++..+ +. | .|+|||+|||.||+.||..|+
T Consensus 149 ~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~-----G-~G~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVS-----G-SGASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred cccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEE-----E-EcCCHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999999999999999999998644 33 4 359999999999999999997
No 9
>PRK12372 ribonuclease III; Reviewed
Probab=99.66 E-value=3.3e-16 Score=138.19 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=65.3
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEec-cccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESL-NTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~-~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
...||||+||||||++++.+|.|+++.++||+|++.|+|.|+|++..+ +. | .|.|||+|||.||+.||..|..
T Consensus 149 ~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~-----G-~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVS-----G-SGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEE-----E-EeCCHHHHHHHHHHHHHHHHhc
Confidence 356999999999999999999999999999999999999999998543 33 3 3599999999999999999984
No 10
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.66 E-value=6.3e-16 Score=101.26 Aligned_cols=66 Identities=35% Similarity=0.469 Sum_probs=55.2
Q ss_pred hhHHHHHHHHhcCCCCCeEEEeceeCCCCC-ceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079 62 AKSKLHEICAANHWKPPSFDCCQEEGPCYR-KLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 62 ~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~-k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L 134 (147)
||+.|+||||++++.+ .|+.+...|++|. +.|+|+|.|+|..++.+ .| +|||+|++.||+.||..|
T Consensus 1 ~~~~L~e~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g---~g---~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPP-PYYYIEEEGPSHHRPRFICTVYIDGKEYGEG---EG---SSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSE-EEEEEEEESSSSSSEEEEEEEEETTEEEEEE---EE---SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCC-CEEEEEEeCCCCCCceEEEEEEECCEEEeEe---cc---CCHHHHHHHHHHHHHHhC
Confidence 7999999999999765 5555566676665 99999999999988643 44 899999999999999876
No 11
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.60 E-value=3.9e-15 Score=119.18 Aligned_cols=75 Identities=32% Similarity=0.393 Sum_probs=67.1
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 56 APNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 56 ~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
.....|||+.|+||||++++..|.|+++.++|+.|.+.|+|.|++++..++. | .|+|||+||+.||+.||..|+
T Consensus 154 ~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-----g-~g~skk~Ae~~AA~~Al~~l~ 227 (229)
T PRK00102 154 GDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGE-----G-TGSSKKEAEQAAAKQALKKLK 227 (229)
T ss_pred ccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEE-----e-eeCCHHHHHHHHHHHHHHHHh
Confidence 3456799999999999999999999999889999999999999999988764 3 349999999999999999986
Q ss_pred h
Q 032079 136 H 136 (147)
Q Consensus 136 ~ 136 (147)
.
T Consensus 228 ~ 228 (229)
T PRK00102 228 E 228 (229)
T ss_pred h
Confidence 3
No 12
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.55 E-value=1.8e-14 Score=114.26 Aligned_cols=71 Identities=32% Similarity=0.344 Sum_probs=64.3
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L 134 (147)
...|||+.|+||||++++..|.|+++.+.|++|.+.|+|.|++++..++. | .|.|||+|++.||+.||..|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~-----g-~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGE-----G-KGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEE-----e-eeCCHHHHHHHHHHHHHHhC
Confidence 57799999999999999989999998888999999999999999988764 3 25999999999999999865
No 13
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.48 E-value=1.1e-13 Score=119.53 Aligned_cols=72 Identities=29% Similarity=0.396 Sum_probs=64.5
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
...||.++|||+||+++|.+|.|+++.+.|+.|.+.|++.|.|++..- .| .|+|||.|+++||+++|..|.-
T Consensus 140 ~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~------~G-kG~sKKiAKRnAAeamLe~l~~ 211 (339)
T KOG3732|consen 140 QVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTE------EG-KGPSKKIAKRNAAEAMLESLGF 211 (339)
T ss_pred cccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceee------ec-CCchHHHHHHHHHHHHHHHhcc
Confidence 467999999999999999999999999999999999999999987431 35 3599999999999999998863
No 14
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.46 E-value=3.5e-13 Score=116.35 Aligned_cols=73 Identities=32% Similarity=0.334 Sum_probs=66.1
Q ss_pred CChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 032079 60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGY 139 (147)
Q Consensus 60 ~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g~ 139 (147)
+++.|.|||+|.+++. .|.|++++++||.|.+.|+++|.|+. ++|.| .|+|||.|++.||..+|..|++...
T Consensus 38 KS~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~------~~a~G-eG~sKK~AKh~AA~~~L~~lk~l~~ 109 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGE------ITATG-EGKSKKLAKHRAAEALLKELKKLPP 109 (339)
T ss_pred CChHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEee------eEEec-CCCchhHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999986 68999999999999999999999984 34567 4699999999999999999999876
Q ss_pred C
Q 032079 140 F 140 (147)
Q Consensus 140 ~ 140 (147)
+
T Consensus 110 l 110 (339)
T KOG3732|consen 110 L 110 (339)
T ss_pred c
Confidence 6
No 15
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.55 E-value=2.6e-07 Score=83.08 Aligned_cols=73 Identities=29% Similarity=0.358 Sum_probs=64.2
Q ss_pred CCCCChhHHHHHHHHhcCCC------CCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHH
Q 032079 57 PNKVSAKSKLHEICAANHWK------PPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGA 130 (147)
Q Consensus 57 ~~~~d~KS~LQE~~Qk~~~~------~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~A 130 (147)
..-.|+|+.||.+|-..... +|.|.+....||.+.+.|+|.|+++|+.+++ | .|++.|.|+-.||+.|
T Consensus 424 q~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat-----~-~G~nik~Ae~rAA~~A 497 (533)
T KOG1817|consen 424 QDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLAT-----G-VGSNIKQAEMRAAMQA 497 (533)
T ss_pred hhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEee-----c-cCchHhHHHHHHHHHH
Confidence 33468999999999987664 7889999999999999999999999999875 3 3599999999999999
Q ss_pred HHHHH
Q 032079 131 LWYLE 135 (147)
Q Consensus 131 L~~L~ 135 (147)
|+.+.
T Consensus 498 Le~~~ 502 (533)
T KOG1817|consen 498 LENLK 502 (533)
T ss_pred HHHHH
Confidence 99886
No 16
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=98.36 E-value=1.4e-06 Score=79.85 Aligned_cols=67 Identities=30% Similarity=0.323 Sum_probs=60.1
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
.++|.+.|+|+.+ -|.|.++.+.||.|.+.|.+.|.|+|+.+. |. |+|||+|++.||..||..|...
T Consensus 89 ~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~------~~-~~sKk~ak~~aa~~al~~l~~~ 155 (542)
T KOG2777|consen 89 GKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFE------GG-GRSKKEAKQEAAMAALQVLFKI 155 (542)
T ss_pred cCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEcc------CC-CcchHHHHHHHHHHHHHHHHhc
Confidence 7799999999999 468999999999999999999999999875 32 6999999999999999998643
No 17
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=2.1e-05 Score=68.05 Aligned_cols=90 Identities=21% Similarity=0.236 Sum_probs=75.1
Q ss_pred CcccccccccccccCCCCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCC-CCCceEEEEEEECCEeccccceeecCCCC
Q 032079 39 YDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGP-CYRKLFTFKVTFEIESLNTILECFGAPQS 117 (147)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP-~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~ 117 (147)
..+.+|-+.++..-+..--+..+|...|-++|++++..-|+|+++.+.|. .-.+.|.|.++-+.+.+|. | .|.
T Consensus 211 ~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGq-----G-~Ge 284 (333)
T KOG3769|consen 211 RDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQ-----G-QGE 284 (333)
T ss_pred HHHHHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhcc-----C-cch
Confidence 44566666666665555566789999999999999999999999999884 5789999999999888764 4 459
Q ss_pred CHHHHHHHHHHHHHHHH
Q 032079 118 KKKTAAEHAAEGALWYL 134 (147)
Q Consensus 118 SKK~AEq~AA~~AL~~L 134 (147)
|=|.|++.||..||..|
T Consensus 285 sl~~A~e~AA~dAL~k~ 301 (333)
T KOG3769|consen 285 SLKLAEEQAARDALIKL 301 (333)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999876
No 18
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=97.64 E-value=0.0002 Score=51.02 Aligned_cols=70 Identities=26% Similarity=0.258 Sum_probs=46.5
Q ss_pred hHHHHHHHHhcCC-----CCCeEEEeceeCCCCCceEEEEEEECCE-eccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 63 KSKLHEICAANHW-----KPPSFDCCQEEGPCYRKLFTFKVTFEIE-SLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 63 KS~LQE~~Qk~~~-----~~P~Yel~~e~GP~H~k~Ftv~V~V~~~-~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
.+.|+.||+.... ..|.|++....+ .|.++|.+... .+.. ..|....+|+.|++.||-.|...|.+
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-----~~~c~v~LP~~~pi~~---i~g~~~~sk~~AK~sAAf~Ac~~L~~ 73 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS-----GFICTVILPINSPIRS---IEGPPMRSKKLAKRSAAFEACKKLHE 73 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G------EEEEEE--TT-SS-----EEEE--SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC-----cEEEEEECCCCCCCCe---EEccccccHHHHHHHHHHHHHHHHHH
Confidence 4789999998543 468999765544 99999999742 1212 25666799999999999999999999
Q ss_pred CCCC
Q 032079 137 LGYF 140 (147)
Q Consensus 137 ~g~~ 140 (147)
.|.|
T Consensus 74 ~g~l 77 (90)
T PF03368_consen 74 AGEL 77 (90)
T ss_dssp H-S-
T ss_pred cCCC
Confidence 9976
No 19
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=97.27 E-value=0.00027 Score=64.84 Aligned_cols=68 Identities=21% Similarity=0.125 Sum_probs=57.4
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L 134 (147)
.++..=.|+||.|.-....|+|+..+ .....-.|...|.+++-.||.| . |.|||.|+..||+.+|..|
T Consensus 374 gks~vCiLhEy~q~~lk~~pvyef~e--~~n~stpysa~v~~d~~~yGsG---~---g~sKK~Ak~~AAR~tLeiL 441 (650)
T KOG4334|consen 374 GKSKVCILHEYAQQCLKSLPVYEFAE--NDNNSTPYSAGVLPDLFPYGSG---V---GASKKTAKLVAARDTLEIL 441 (650)
T ss_pred CceeeehHHHHHHHHhhhcceeehhh--ccCCCCcccccccccccccccc---c---ccchHHHHHHHHHHHHHHh
Confidence 34566789999999999999998543 4567788999999999888863 3 4999999999999999987
No 20
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.95 E-value=0.0015 Score=63.75 Aligned_cols=80 Identities=26% Similarity=0.300 Sum_probs=67.5
Q ss_pred CChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 032079 60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGY 139 (147)
Q Consensus 60 ~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g~ 139 (147)
.|-|+.|..||-|+... |.|.+ ..+|++..+.|.|.|.+.+--+.. .| ....||.|+..||+.-...|...|.
T Consensus 1 ~d~k~fly~~~~k~~~~-p~~d~-~~~~~~~rqrf~ce~~~~~~~~~~----~~-~stnkKda~knac~dfv~ylvr~Gk 73 (1282)
T KOG0921|consen 1 RDVKEFLYAWLGKNKYG-PTYDI-RSEGRKGRQRFLCEVRVEGFGYTA----VG-NSTNKKDAATNAAQDFCQYLVREGK 73 (1282)
T ss_pred CcHHHHHHHHHhhhccC-cceeh-hhhcccchhheeeeeeccCCccee----ee-cccccchhhHHHHHHHHHHhhhhcc
Confidence 36799999999999886 89995 678999999999999998865542 44 3477999999999999999999998
Q ss_pred CCccccc
Q 032079 140 FPIRKLK 146 (147)
Q Consensus 140 ~p~~~~~ 146 (147)
++-.+++
T Consensus 74 ~n~~d~p 80 (1282)
T KOG0921|consen 74 MQQSDIP 80 (1282)
T ss_pred ccccCCc
Confidence 8766553
No 21
>PF14954 LIX1: Limb expression 1
Probab=92.57 E-value=0.41 Score=40.33 Aligned_cols=72 Identities=24% Similarity=0.141 Sum_probs=48.0
Q ss_pred CCCCCChhHHHHHHHHh---cCCCCCeEE-EeceeCCCCCceEEEEEEECCEeccccceeecCC--CCCHHHHHHHHHHH
Q 032079 56 APNKVSAKSKLHEICAA---NHWKPPSFD-CCQEEGPCYRKLFTFKVTFEIESLNTILECFGAP--QSKKKTAAEHAAEG 129 (147)
Q Consensus 56 ~~~~~d~KS~LQE~~Qk---~~~~~P~Ye-l~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~--g~SKK~AEq~AA~~ 129 (147)
.....|....|||+=|. ++-.++.=. ++-+..|...+.|+|-|++.| ..|+|.. =++|-+|.+.||+-
T Consensus 17 ~~~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPG------GSCFGnfq~C~tkAEARR~AAKi 90 (252)
T PF14954_consen 17 GYGDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPG------GSCFGNFQNCPTKAEARRSAAKI 90 (252)
T ss_pred ccccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCC------CCccCccccCCcHHHHHhhhHHH
Confidence 44556788999996543 222222211 123456888899999999965 2345422 27899999999999
Q ss_pred HHHH
Q 032079 130 ALWY 133 (147)
Q Consensus 130 AL~~ 133 (147)
||.-
T Consensus 91 ALmN 94 (252)
T PF14954_consen 91 ALMN 94 (252)
T ss_pred HHHH
Confidence 9863
No 22
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=91.47 E-value=0.087 Score=47.92 Aligned_cols=65 Identities=26% Similarity=0.269 Sum_probs=54.6
Q ss_pred CChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHH
Q 032079 60 VSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWY 133 (147)
Q Consensus 60 ~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~ 133 (147)
..+|..|..||-+.+..-|.|+++.. -.+.|...+.++|..|... -+.+++|-|+|.||..+|..
T Consensus 375 ~~~k~~l~~~~~~~~~~~~~ye~~~~----~d~lf~si~~~~~~~~~ss-----i~~~n~k~aeq~aa~~~l~~ 439 (477)
T KOG2334|consen 375 DTPKMVLADLCVKTKANGPVYETVQR----TDKLFSSIATARGQKYNSS-----IWSPNKKSAEQDAAIVALRK 439 (477)
T ss_pred CCHHHHHHHhhhhhcCCCcchhhhhh----hhhhhHHHhhhhhhhhhcc-----ccCcchhhHHHHHHHHHHHh
Confidence 46999999999999999999998764 4689999999999998753 33699999999999666544
No 23
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=89.11 E-value=0.24 Score=47.51 Aligned_cols=66 Identities=23% Similarity=0.177 Sum_probs=50.1
Q ss_pred ChhHHHHHHHHhcCCCCCeEE------EeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079 61 SAKSKLHEICAANHWKPPSFD------CCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 61 d~KS~LQE~~Qk~~~~~P~Ye------l~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L 134 (147)
|+-..|.-+=|.++. ..|+ ++..+||.|.++|+++|.+++..+.. . |+|||.|.-.||. +.|
T Consensus 371 d~nak~mhl~grRhr--LQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~a----~---gps~~~~~wh~~~---k~l 438 (816)
T KOG3792|consen 371 DPNAKEMHLKGRRHR--LQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAEA----E---GPSKKTAKWHAAR---KRL 438 (816)
T ss_pred CcchHHhhhhccccc--ceeccccCCCceeccCCcccchhhhhhhhcCCcccc----C---CcccccchHHHHH---HHh
Confidence 455555555555543 4799 88999999999999999999976542 3 4999999999995 456
Q ss_pred HhCC
Q 032079 135 EHLG 138 (147)
Q Consensus 135 ~~~g 138 (147)
+++|
T Consensus 439 q~~~ 442 (816)
T KOG3792|consen 439 QNEG 442 (816)
T ss_pred hccC
Confidence 6665
No 24
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=87.06 E-value=0.44 Score=44.34 Aligned_cols=51 Identities=27% Similarity=0.300 Sum_probs=42.8
Q ss_pred CCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 74 HWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 74 ~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
.|.-+.|..+.+.||-|.+.|.+.|.|++.. + . ||.|.+.||+.|+..+..
T Consensus 6 ~~~~~~~~~~~q~~p~~~p~~~~~~~v~~~~--------~---~-~k~~~~~~a~~~~~~~~~ 56 (542)
T KOG2777|consen 6 IAPGLQYNLVSQTGPVHAPLFPFSVEVNGQE--------F---P-KKKAKQRAAEKALRVFLQ 56 (542)
T ss_pred cccccccccccccCCCCCCcccceEEecccc--------c---c-cccccchhhhHHHHHHhh
Confidence 3444789999999999999999999999853 3 3 899999999999887654
No 25
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=82.77 E-value=1.1 Score=46.49 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=35.8
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEE
Q 032079 55 GAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKV 98 (147)
Q Consensus 55 ~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V 98 (147)
........++.+.+.|-...|++|.|..+++.++.|-.+|...+
T Consensus 1509 iagai~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~ 1552 (1606)
T KOG0701|consen 1509 IAGAIKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGK 1552 (1606)
T ss_pred ccceeecCcccccchHhhcCcCCCCccchhhhccccceeeccch
Confidence 34445667779999999999999999999999999977765443
No 26
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=82.40 E-value=0.91 Score=43.74 Aligned_cols=49 Identities=20% Similarity=-0.065 Sum_probs=39.9
Q ss_pred eEEEeceeC-CCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079 79 SFDCCQEEG-PCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 79 ~Yel~~e~G-P~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L 134 (147)
+|++..++| -+|.++|+..|.+.|..+ .| .+.+++.|.+-||-.|++.+
T Consensus 520 k~El~set~~gs~~~R~v~gV~rvG~~a------kG-~~~~gd~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 520 KYELPSETGTGSHDKRFVKGVMRVGILA------KG-LLLNGDRAVELALLCAEKPT 569 (816)
T ss_pred ceecccccCCCCCCceeeeeeeeeehhh------cc-ccccchHHHHHHHHhccCcc
Confidence 799998888 899999999999988654 34 35889999999986665543
No 27
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=52.62 E-value=6.6 Score=39.46 Aligned_cols=80 Identities=23% Similarity=0.178 Sum_probs=57.1
Q ss_pred CCCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHH
Q 032079 54 EGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWY 133 (147)
Q Consensus 54 ~~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~ 133 (147)
...-...|.|.+|.++.|+... .-.|.. ..-||+|.+.|+.+..+--........+.+ .+++||.|+...|...+..
T Consensus 161 hg~wt~eN~K~~ln~~~q~~~~-~~~y~~-~~~g~~~~~s~~~e~si~v~~~~~~~~~~~-~gsnkk~~~~~ca~s~vrq 237 (1282)
T KOG0921|consen 161 HGNWTMENAKKALNEYLQKMRI-QDNYKY-TIVGPEHVRSFEAEASIYVPQLNRNLVAKE-TGSNKKVAEASCALSLVRQ 237 (1282)
T ss_pred cCCCCcchhHHHHhHHHhhhhh-ccccce-eecCCccccchhhhHHHhhhhhchhhhhhh-ccccceecCcchHHHHHHH
Confidence 3445566899999999999987 557884 467999999999988773322221112223 3699999999999777666
Q ss_pred HHh
Q 032079 134 LEH 136 (147)
Q Consensus 134 L~~ 136 (147)
|-+
T Consensus 238 m~h 240 (1282)
T KOG0921|consen 238 LFH 240 (1282)
T ss_pred HHH
Confidence 544
No 28
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=40.41 E-value=1.2e+02 Score=20.72 Aligned_cols=54 Identities=24% Similarity=0.215 Sum_probs=33.7
Q ss_pred CCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCCCCCcccc
Q 032079 88 PCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGYFPIRKL 145 (147)
Q Consensus 88 P~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g~~p~~~~ 145 (147)
|...+.|.++..++|+..-..+...+ .-|-.+|.+.|.+ +..+-..|..|.++-
T Consensus 31 ~~G~kt~~~r~~~~gk~~~~~lG~~p--~~sl~~AR~~a~~--~~~~~~~G~dP~~~~ 84 (89)
T PF13356_consen 31 PSGSKTFYFRYRINGKRRRITLGRYP--ELSLAEAREKARE--LRALVRQGIDPREEK 84 (89)
T ss_dssp TTS-EEEEEEEEETTEEEEEEEEECT--TS-HHHHHHHHHH--HHHHHCTT--GGGS-
T ss_pred eCCCeEEEEEEEecceEEEeccCCCc--cCCHHHHHHHHHH--HHHHHHcCCCHHHHH
Confidence 66789999999999986653332233 4677888888863 444456788887654
No 29
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=38.35 E-value=45 Score=20.39 Aligned_cols=19 Identities=32% Similarity=0.122 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 032079 116 QSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 116 g~SKK~AEq~AA~~AL~~L~ 135 (147)
..+|++|+..+++ ++..|.
T Consensus 24 F~TkkeA~~~~~~-~~~~~~ 42 (46)
T PF14657_consen 24 FKTKKEAEKALAK-IEAELE 42 (46)
T ss_pred CCcHHHHHHHHHH-HHHHHH
Confidence 6999999998885 444444
No 30
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=31.64 E-value=2e+02 Score=27.37 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=37.0
Q ss_pred ChhHHHHHHHHh-cCCCCC--eEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 61 SAKSKLHEICAA-NHWKPP--SFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 61 d~KS~LQE~~Qk-~~~~~P--~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
.|-..|.+-+++ .||... .++++ .+......|++.| +... . ...| .+||.+.|.|.++.|..|.
T Consensus 491 sPy~iL~~cl~Rn~g~~d~~ik~E~i--~~~nqkse~im~~--Gkht-~-~~~c-----knkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 491 SPYNILRDCLSRNLGWNDLVIKKEMI--GNGNQKSEVIMIL--GKHT-E-EAEC-----KNKRQGKQLASQRILQKLH 557 (650)
T ss_pred CHHHHHHHHHHhhcCCcceeeeeecc--CCCCccceeEeee--ccce-e-eeee-----echhHHHHHHHHHHHHHhC
Confidence 356688887776 455332 33332 2334444555543 3321 1 1223 5699999999999888763
No 31
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=29.27 E-value=36 Score=22.90 Aligned_cols=15 Identities=27% Similarity=0.789 Sum_probs=10.9
Q ss_pred HHHHHHHhcCCCCCe
Q 032079 65 KLHEICAANHWKPPS 79 (147)
Q Consensus 65 ~LQE~~Qk~~~~~P~ 79 (147)
...+||+++||..|.
T Consensus 31 eV~~YC~~~GWIip~ 45 (57)
T PF08727_consen 31 EVREYCEEQGWIIPA 45 (57)
T ss_dssp HHHHHHHHHT--TT-
T ss_pred HHHHHHHHCCccccC
Confidence 588999999998886
No 32
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=27.12 E-value=18 Score=24.98 Aligned_cols=10 Identities=50% Similarity=1.079 Sum_probs=7.8
Q ss_pred cCCCccceec
Q 032079 9 SGDDDALFCL 18 (147)
Q Consensus 9 ~~~~~~~~~~ 18 (147)
.|-|+||||-
T Consensus 10 TGpDDssFCh 19 (70)
T COG5515 10 TGPDDSSFCH 19 (70)
T ss_pred cCCchHHHHH
Confidence 5778888885
No 33
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=23.62 E-value=36 Score=25.14 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeEEEe
Q 032079 57 PNKVSAKSKLHEICAANHWKPPSFDCC 83 (147)
Q Consensus 57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~ 83 (147)
++....=-+|..+|+++||..|.+..+
T Consensus 49 Ps~~~cyrr~~~~a~~~Gw~iPS~~t~ 75 (108)
T PF09039_consen 49 PSFSACYRRLKRAAKENGWPIPSEKTL 75 (108)
T ss_dssp --HHHHHHHHHHHHHHHT-----HHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 333344568899999999999988754
No 34
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=21.87 E-value=1e+02 Score=30.30 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=53.5
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEecc--ccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLN--TILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~--~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
-+.|||-.|+-+.-+.|..+ .|+. .+.|+. .|.|.|.+....-+ ..+.... ...+||+|.-.||..|...|.
T Consensus 347 y~qdPkk~l~~ffereg~~l-~~~~-deq~~~---~w~c~v~lp~~~~~~~~~v~~~~-~~g~kke~~iqc~ldaCrild 420 (793)
T KOG1881|consen 347 YIQDPKKALLGFFEREGEDL-EYEF-DEQGHG---KWVCRVELPVDDSGGARAVAEAA-HSGEKKEAFIQCALDACRILD 420 (793)
T ss_pred cccCHHHHHHHHHHhhhhhh-hhhh-hhcCCc---eEEeeeeeecccccchhHHHHHh-hhchhHHHHHHHHHhhhhhcc
Confidence 35599999999999998755 8884 566655 89999988543322 0000011 123789999999988888877
Q ss_pred hCCCC
Q 032079 136 HLGYF 140 (147)
Q Consensus 136 ~~g~~ 140 (147)
..|++
T Consensus 421 ~~~ll 425 (793)
T KOG1881|consen 421 TAGLL 425 (793)
T ss_pred ccchh
Confidence 66655
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=21.84 E-value=65 Score=30.39 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=28.1
Q ss_pred hhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECC
Q 032079 62 AKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEI 102 (147)
Q Consensus 62 ~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~ 102 (147)
.-..|-++|++++|..| ..|++....|.++|+|..
T Consensus 437 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 471 (578)
T TIGR01648 437 RPAIPPPRGRKNGAPPP------AIGQDGRQLFLYKITIPA 471 (578)
T ss_pred CCccchhhccccCCCCC------cccccccceeeeeeeccc
Confidence 33478899999999988 457777888999998876
Done!