Query 032079
Match_columns 147
No_of_seqs 120 out of 1084
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3adj_A F21M12.9 protein; HYL1, 99.9 4.3E-24 1.5E-28 146.5 8.8 72 59-136 3-74 (76)
2 3adg_A F21M12.9 protein; HYL1, 99.9 1.1E-23 3.6E-28 143.2 10.0 70 59-135 2-72 (73)
3 3adl_A RISC-loading complex su 99.9 2E-23 6.9E-28 147.7 10.4 75 57-138 12-86 (88)
4 1di2_A XLRBPA, double stranded 99.9 1.4E-23 4.9E-28 141.0 8.4 68 61-135 1-68 (69)
5 2cpn_A TAR RNA-binding protein 99.9 3.4E-23 1.2E-27 146.7 10.0 71 59-136 15-85 (89)
6 1uhz_A Staufen (RNA binding pr 99.9 7.2E-23 2.5E-27 145.0 10.4 72 58-136 4-75 (89)
7 2dix_A Interferon-inducible do 99.9 1.4E-22 4.8E-27 141.8 10.7 75 57-139 5-79 (84)
8 2khx_A Ribonuclease 3; drosha, 99.9 3.8E-23 1.3E-27 145.4 7.8 71 60-136 1-76 (85)
9 1whq_A RNA helicase A; double- 99.9 7.6E-23 2.6E-27 147.7 8.8 78 59-144 5-83 (99)
10 1ekz_A DSRBDIII, maternal effe 99.9 2.2E-23 7.5E-28 142.6 4.9 71 58-136 5-75 (76)
11 2l2n_A Hyponastic leave 1; DSR 99.9 2.1E-22 7.3E-27 146.0 9.5 76 58-140 15-91 (103)
12 3llh_A RISC-loading complex su 99.9 1.5E-22 5.3E-27 143.2 8.5 77 56-140 10-86 (90)
13 2b7t_A Double-stranded RNA-spe 99.9 3.4E-22 1.2E-26 135.9 9.4 70 59-137 3-72 (73)
14 1x49_A Interferon-induced, dou 99.9 5.5E-22 1.9E-26 142.6 9.1 73 58-137 12-84 (97)
15 1uil_A Double-stranded RNA-bin 99.9 7.7E-22 2.6E-26 145.4 7.6 77 57-141 23-104 (113)
16 1t4n_A Ribonuclease III; DSRBD 99.8 4.6E-22 1.6E-26 143.3 4.9 69 59-135 5-74 (94)
17 2ljh_A Double-stranded RNA-spe 99.8 4.4E-21 1.5E-25 142.2 8.9 90 38-139 15-104 (114)
18 2dmy_A Spermatid perinuclear R 99.8 8.2E-21 2.8E-25 136.2 9.8 70 57-135 13-82 (97)
19 1x48_A Interferon-induced, dou 99.8 8.6E-21 2.9E-25 133.9 8.7 71 59-138 5-76 (88)
20 1x47_A DGCR8 protein; structur 99.8 1.7E-20 5.7E-25 134.9 9.7 71 58-136 14-84 (98)
21 1t4o_A Ribonuclease III; RNT1P 99.8 4E-21 1.4E-25 143.4 6.6 70 58-135 6-76 (117)
22 2l33_A Interleukin enhancer-bi 99.8 1.8E-20 6.2E-25 133.8 8.2 72 58-138 12-83 (91)
23 1qu6_A Protein kinase PKR; dsR 99.8 9.5E-20 3.3E-24 141.7 9.1 77 56-139 9-85 (179)
24 1whn_A Hypothetical protein ri 99.8 1.2E-19 4.2E-24 136.6 8.9 69 58-135 24-93 (128)
25 2b7v_A Double-stranded RNA-spe 99.8 8.1E-19 2.8E-23 118.4 8.9 67 58-136 2-68 (71)
26 2nug_A Ribonuclease III, RNAse 99.7 2E-18 6.8E-23 137.4 7.7 71 59-136 149-219 (221)
27 1o0w_A Ribonuclease III, RNAse 99.7 4.7E-18 1.6E-22 138.2 8.6 73 58-136 177-249 (252)
28 3p1x_A Interleukin enhancer-bi 99.7 1E-17 3.5E-22 114.8 8.8 68 61-137 5-72 (75)
29 2yt4_A Protein DGCR8; DSRBD, R 99.7 2.8E-17 9.4E-22 133.3 9.7 72 58-137 20-91 (232)
30 3n3w_A Ribonuclease III; nucle 99.7 3.1E-18 1E-22 139.6 0.0 73 58-136 175-247 (248)
31 2a11_A Ribonuclease III, RNAse 99.6 9.6E-18 3.3E-22 135.1 0.0 73 59-138 161-233 (242)
32 2l3j_A Double-stranded RNA-spe 99.6 6E-16 2.1E-20 125.4 9.3 71 58-140 159-229 (236)
33 1qu6_A Protein kinase PKR; dsR 99.6 2.4E-15 8.3E-20 116.8 8.7 72 58-137 102-173 (179)
34 2l3j_A Double-stranded RNA-spe 99.6 7.3E-15 2.5E-19 119.0 9.4 70 59-137 3-72 (236)
35 2yt4_A Protein DGCR8; DSRBD, R 99.6 2.7E-15 9.2E-20 121.6 6.1 69 58-136 128-198 (232)
36 3rv0_A K. polysporus DCR1; RNA 99.4 2.8E-14 9.7E-19 121.7 0.0 69 57-136 251-320 (341)
37 3c4b_A Endoribonuclease dicer; 99.1 5.2E-11 1.8E-15 96.5 6.4 68 61-138 198-265 (265)
38 2kou_A Dicer-like protein 4; A 97.3 0.00047 1.6E-08 49.4 6.2 76 60-140 4-84 (102)
39 2db2_A KIAA0890 protein; DSRM 94.6 0.03 1E-06 41.4 3.8 74 58-140 15-93 (119)
40 3htx_A HEN1; HEN1, small RNA m 92.8 0.16 5.3E-06 48.7 6.1 69 59-137 16-96 (950)
41 2gjh_A Designed protein; oblig 53.5 21 0.00073 22.8 4.2 26 117-143 11-36 (62)
42 3ju0_A Phage integrase; four s 31.2 1.3E+02 0.0045 20.8 7.0 53 88-144 32-84 (108)
43 3htx_A HEN1; HEN1, small RNA m 30.0 1E+02 0.0036 29.6 6.6 77 59-135 393-502 (950)
44 2qvw_A GLP_546_48378_50642; di 29.7 17 0.00056 33.8 1.1 19 57-75 444-463 (756)
45 1qys_A TOP7; alpha-beta, novel 29.7 55 0.0019 22.8 3.6 25 117-142 55-79 (106)
46 1ng7_A Poliovirus 3A-N, genome 23.0 40 0.0014 21.9 1.7 15 65-79 33-47 (60)
No 1
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.90 E-value=4.3e-24 Score=146.52 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=65.7
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
..||||.||||||++++.+|.|+++.++||+|++.|+|.|.|+|..++. | .|+|||+|||.||+.||..|..
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~-----G-~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTG-----A-ATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEEC-----C-CBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEE-----e-ccCCHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999999999999999999999999999999987764 4 3599999999999999999864
No 2
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.90 E-value=1.1e-23 Score=143.19 Aligned_cols=70 Identities=30% Similarity=0.375 Sum_probs=63.6
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCC-CCHHHHHHHHHHHHHHHHH
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ-SKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g-~SKK~AEq~AA~~AL~~L~ 135 (147)
..||||+||||||++++.+|.|+++.+ ||+|.+.|+|.|+|+|..++. | .| +|||+|||.||+.||..|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp~h~~~F~~~v~v~g~~~~~-----G-~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNS-----L-PGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEE-SSTTSCEEEEEEEETTEEEEC-----C-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeE-CCCCCCeEEEEEEECCEEEEe-----e-eccCCHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999999875 999999999999999988764 4 36 8999999999999999885
No 3
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=147.74 Aligned_cols=75 Identities=27% Similarity=0.383 Sum_probs=66.1
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
....||||+||||||++++.+|.|+++.++||+|.+.|+|.|+|++. ++.+ . |+|||+|||.||+.||..|..
T Consensus 12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G---~---G~SKK~Aeq~AA~~AL~~L~~ 84 (88)
T 3adl_A 12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG---S---GTSKKLAKRNAAAKMLLRVHT 84 (88)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEE---E---ESSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEE---e---eCCHHHHHHHHHHHHHHHHHc
Confidence 34579999999999999999999999999999999999999999996 6543 4 499999999999999999975
Q ss_pred CC
Q 032079 137 LG 138 (147)
Q Consensus 137 ~g 138 (147)
.+
T Consensus 85 ~p 86 (88)
T 3adl_A 85 VP 86 (88)
T ss_dssp --
T ss_pred cC
Confidence 43
No 4
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.89 E-value=1.4e-23 Score=140.99 Aligned_cols=68 Identities=26% Similarity=0.374 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
.|||.||||||+++|.+|.|+++.++||+|++.|+|.|.|+|. ++.+ . |+|||+|||.||+.||..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G---~---G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETG---S---GTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE---E---ESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEe---e---cCCHHHHHHHHHHHHHHHHh
Confidence 3899999999999999999999999999999999999999997 6643 3 49999999999999999986
No 5
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.89 E-value=3.4e-23 Score=146.71 Aligned_cols=71 Identities=28% Similarity=0.419 Sum_probs=65.1
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
..|||++||||||+++|.+|.|+++.++||+|.+.|+|.|+|++. ++.+ .| +|||+|||.||+.||..|..
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G---~G---~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG---SG---TSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEE---EE---SSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEe---ee---CCHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999999997 6543 44 99999999999999999964
No 6
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.89 E-value=7.2e-23 Score=145.05 Aligned_cols=72 Identities=29% Similarity=0.269 Sum_probs=64.9
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
...||||+||||||++++.+|.|+++.++||+|++.|+|.|+|++. ++.+ . |+|||+|||.||+.||..|..
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G---~---G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATG---T---GPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEE---E---ESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEE---e---eCCHHHHHHHHHHHHHHHHhc
Confidence 3569999999999999999999999999999999999999999996 6543 3 499999999999999999964
No 7
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.88 E-value=1.4e-22 Score=141.78 Aligned_cols=75 Identities=27% Similarity=0.291 Sum_probs=66.4
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
....||||+||||||+++ ..|.|+++.++||+|++.|+|.|+|++ .++. | .|+|||+|||.||+.||..|..
T Consensus 5 ~~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~-----G-~G~SKK~Aeq~AA~~aL~~L~~ 76 (84)
T 2dix_A 5 SSGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCT-----G-EGTSKKLAKHRAAEAAINILKA 76 (84)
T ss_dssp CCCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEE-----E-CSSCTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEE-----e-eeCCHHHHHHHHHHHHHHHHhc
Confidence 345799999999999998 689999999999999999999999999 6654 4 3599999999999999999986
Q ss_pred CCC
Q 032079 137 LGY 139 (147)
Q Consensus 137 ~g~ 139 (147)
...
T Consensus 77 ~~~ 79 (84)
T 2dix_A 77 NAS 79 (84)
T ss_dssp TCC
T ss_pred ccc
Confidence 554
No 8
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.88 E-value=3.8e-23 Score=145.40 Aligned_cols=71 Identities=25% Similarity=0.279 Sum_probs=63.8
Q ss_pred CChhHHHHHHHHh-----cCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079 60 VSAKSKLHEICAA-----NHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 60 ~d~KS~LQE~~Qk-----~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L 134 (147)
.||||+||||||+ +++.+|.|+++.++||+|.+.|+|.|+|+|..++.+ .| +|||+|||.||+.||..|
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G---~G---~SKK~AEq~AA~~AL~~L 74 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCG---KG---PSIQQAEMGAAMDALEKY 74 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCE---EE---SSHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEE---ee---CCHHHHHHHHHHHHHHHH
Confidence 4899999999998 567899999999999999999999999999888753 44 999999999999999877
Q ss_pred Hh
Q 032079 135 EH 136 (147)
Q Consensus 135 ~~ 136 (147)
..
T Consensus 75 ~~ 76 (85)
T 2khx_A 75 NF 76 (85)
T ss_dssp CS
T ss_pred hH
Confidence 54
No 9
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.88 E-value=7.6e-23 Score=147.68 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=68.8
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECC-EeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEI-ESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~-~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
..||||+||||||++ +.+|.|++ .++||+|++.|+|.|+|++ ..++.+ .| +|||+|||.||+.||..|...
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~~~~~~G---~G---~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEI-RAVGNKNRQKFMCEVRVEGFNYAGMG---NS---TNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEE-EEEECSSSEEEEEEEECTTCSCCEEE---EE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEE-eeecCCCCCeEEEEEEECCeEEEEEe---cc---CCHHHHHHHHHHHHHHHHHhh
Confidence 469999999999999 89999998 8899999999999999999 566643 44 999999999999999999988
Q ss_pred CCCCccc
Q 032079 138 GYFPIRK 144 (147)
Q Consensus 138 g~~p~~~ 144 (147)
+.+...+
T Consensus 77 ~~~~~~~ 83 (99)
T 1whq_A 77 NEVKSEE 83 (99)
T ss_dssp TSSCTTT
T ss_pred CCCCccc
Confidence 8775443
No 10
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.88 E-value=2.2e-23 Score=142.60 Aligned_cols=71 Identities=30% Similarity=0.334 Sum_probs=64.1
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
...||||.||||||++++. |.|+++.++||+|.+.|+|.|+|++ .++. | .|+|||+|||.||+.||..|.+
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~-----G-~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTE-----G-EGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEE-----E-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEE-----E-eeCCHHHHHHHHHHHHHHHHhh
Confidence 3569999999999999998 9999999999999999999999999 6654 4 3599999999999999999864
No 11
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.87 E-value=2.1e-22 Score=145.98 Aligned_cols=76 Identities=29% Similarity=0.346 Sum_probs=64.5
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCC-CCHHHHHHHHHHHHHHHHHh
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ-SKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g-~SKK~AEq~AA~~AL~~L~~ 136 (147)
...||||+||||||++++.+|.|+++.+ ||+|++.|+|.|+|+|..++. | .| +|||+|||.||+.||..|..
T Consensus 15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp~H~~~F~~~V~v~g~~~~~-----G-~G~~SKK~Aeq~AA~~AL~~L~~ 87 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNS-----L-PGFFNRKAAEQSAAEVALRELAK 87 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEEE-SCSSSCEEEEEEEETTEEEEC-----C-SCBSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeE-cCCCCCeEEEEEEECCEEEEE-----e-ecCCCHHHHHHHHHHHHHHHHhc
Confidence 4569999999999999999999999875 999999999999999988764 4 36 89999999999999999987
Q ss_pred CCCC
Q 032079 137 LGYF 140 (147)
Q Consensus 137 ~g~~ 140 (147)
.+.+
T Consensus 88 ~~~~ 91 (103)
T 2l2n_A 88 SSEL 91 (103)
T ss_dssp HC--
T ss_pred cccc
Confidence 6644
No 12
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=143.17 Aligned_cols=77 Identities=30% Similarity=0.201 Sum_probs=57.4
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 56 APNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 56 ~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
.....||||+||||||+++. .|.|+++.++||+|++.|+|.|+|++. ++.+ . |+|||+|||.||+.||..|.
T Consensus 10 ~~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G---~---G~SKK~Aeq~AA~~aL~~L~ 81 (90)
T 3llh_A 10 ANPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTG---Q---GPSKKAAKHKAAEVALKHLK 81 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEE---E---ESSHHHHHHHHHHHHHHHHC
T ss_pred cccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEE---E---eCCHHHHHHHHHHHHHHHHH
Confidence 44568999999999999975 899999999999999999999999986 4432 3 49999999999999999998
Q ss_pred hCCCC
Q 032079 136 HLGYF 140 (147)
Q Consensus 136 ~~g~~ 140 (147)
..+.+
T Consensus 82 ~~~~~ 86 (90)
T 3llh_A 82 GGSML 86 (90)
T ss_dssp -----
T ss_pred hcccc
Confidence 76654
No 13
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.87 E-value=3.4e-22 Score=135.91 Aligned_cols=70 Identities=26% Similarity=0.255 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
..||||.||||||+ +.+|.|+++.++||+|++.|++.|.|+|..+ .+ .| +|||+|||.||+.||..|.+.
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G---~G---~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG---SG---PTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EE---EE---SSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Ee---ec---CCHHHHHHHHHHHHHHHHhcC
Confidence 46999999999996 7899999999999999999999999999764 32 44 999999999999999999753
No 14
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.86 E-value=5.5e-22 Score=142.57 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=65.9
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
...|||++||||||++++. |.|+++.++||+|.+.|+|.|+|++..++.+ .| +|||+|||.||+.||..|...
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G---~G---~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEA---KG---RSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCE---EE---SSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEE---ee---CCHHHHHHHHHHHHHHHHHhh
Confidence 5679999999999999996 8999999999999999999999999887753 44 999999999999999999643
No 15
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.85 E-value=7.7e-22 Score=145.38 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=67.6
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEE-----CCEeccccceeecCCCCCHHHHHHHHHHHHH
Q 032079 57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTF-----EIESLNTILECFGAPQSKKKTAAEHAAEGAL 131 (147)
Q Consensus 57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V-----~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL 131 (147)
-...|||++||||||++++ +|.|+ +.++||+|++.|+|.|+| ++..++. | .|+|||+|||.||+.||
T Consensus 23 ~~~~d~Kt~LqE~~Qk~~~-~p~Y~-~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~-----G-~G~SKK~AEq~AA~~AL 94 (113)
T 1uil_A 23 WTLENAKARLNQYFQKEKI-QGEYK-YTQVGPDHNRSFIAEMTIYIKQLGRRIFAR-----E-HGSNKKLAAQSCALSLV 94 (113)
T ss_dssp CCHHHHHHHHHHHHHHSCC-CCCCE-EEEESCSTTCEEEEEEEEEETTTTEEEEEE-----C-CCSSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCC-CCeEE-EeeECCCCCCcEEEEEEEeeeccCCEEEEE-----E-eeCCHHHHHHHHHHHHH
Confidence 3356999999999999999 99999 788999999999999999 5666653 4 35999999999999999
Q ss_pred HHHHhCCCCC
Q 032079 132 WYLEHLGYFP 141 (147)
Q Consensus 132 ~~L~~~g~~p 141 (147)
..|...+++.
T Consensus 95 ~~L~~~~~ie 104 (113)
T 1uil_A 95 RQLYHLGVIE 104 (113)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHhcCCcc
Confidence 9999888774
No 16
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.85 E-value=4.6e-22 Score=143.33 Aligned_cols=69 Identities=19% Similarity=0.068 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCE-eccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIE-SLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~-~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
..||||+||||||++ ..+|.|+++++ ||+|++.|+|.|+|++. .++.+ .| +|||+|||+||+.||..|.
T Consensus 5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~-GpdH~k~F~v~v~i~~~~~~g~G---~G---~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTG---VG---RNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp CHHHHHHHHHHTCSS-SSCCEEEECCC-CSSSCCSEEEEEECSSSCEEEEE---EE---SSHHHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEE---Ee---CCHHHHHHHHHHHHHHHHH
Confidence 459999999999998 56899999765 99999999999999997 77653 44 9999999999999998775
No 17
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.84 E-value=4.4e-21 Score=142.18 Aligned_cols=90 Identities=21% Similarity=0.130 Sum_probs=71.1
Q ss_pred CCcccccccccccccCCCCCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCC
Q 032079 38 GYDYEDDRFYEKESKNEGAPNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQS 117 (147)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~ 117 (147)
+|-.+..-.|.+++.........||||+||||||+ |.|+++.++||+|++.|+|.|+|+|..+ .+ .| +
T Consensus 15 ~~~~~~~~~p~~~~~k~~~~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G---~G---~ 82 (114)
T 2ljh_A 15 VPRGSHMSDPKKKMCKERIPQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LG---QG---R 82 (114)
T ss_dssp -------CCCCCCCCCCCCCCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EE---EE---S
T ss_pred cccccCCCCCCCccccccCCCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee---ee---C
Confidence 44445555566666666666778999999999985 8999999999999999999999999887 43 45 9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCC
Q 032079 118 KKKTAAEHAAEGALWYLEHLGY 139 (147)
Q Consensus 118 SKK~AEq~AA~~AL~~L~~~g~ 139 (147)
|||+|||+||+.||..|...+-
T Consensus 83 SKK~AEq~AA~~AL~~L~~~~~ 104 (114)
T 2ljh_A 83 SKKVARIEAAATALRSFIQFKD 104 (114)
T ss_dssp SHHHHHHHHHHHHHHHHCCCTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999976553
No 18
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.84 E-value=8.2e-21 Score=136.19 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=62.9
Q ss_pred CCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 57 PNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 57 ~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
....||||+||||||++ .+|.|+++.++||+|++.|++.|+|++..+ .+ .| +|||+|||.||+.||..|.
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G---~G---~SKK~Aeq~AA~~aL~~L~ 82 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EA---SG---PSKKTAKLHVAVKVLQAMG 82 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EE---EE---SSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EE---ee---CCHHHHHHHHHHHHHHHhC
Confidence 45679999999999996 689999999999999999999999999875 32 44 9999999999999999985
No 19
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.84 E-value=8.6e-21 Score=133.95 Aligned_cols=71 Identities=17% Similarity=0.062 Sum_probs=62.8
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCc-eEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRK-LFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k-~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
..||||+||||||++++.+ .|+ .++||+|++ .|+|.|+|++..++.+ .| +|||+|||.||+.||..|...
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~--~~~Gp~H~~~~F~~~v~v~g~~~~~G---~G---~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE--QCEPNSELPQRFICKCKIGQTMYGTG---SG---VTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE--ECCCSSSSSCCEEEEEEESSCEEEEE---EE---SSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE--EeeCCCCCCceEEEEEEECCEEEEEe---ec---CCHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999965 999 678999999 7999999999887653 44 999999999999999999865
Q ss_pred C
Q 032079 138 G 138 (147)
Q Consensus 138 g 138 (147)
.
T Consensus 76 ~ 76 (88)
T 1x48_A 76 P 76 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 20
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.83 E-value=1.7e-20 Score=134.93 Aligned_cols=71 Identities=27% Similarity=0.202 Sum_probs=64.7
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
...|||++||||||++++.+|.|+++.++||+ +.|+|.|+|++..++.+ .| +|||+|||.||+.||..|..
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G---~G---~SKK~Aeq~AA~~AL~~L~~ 84 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG---TA---SSKKLAKNKAARATLEILIP 84 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE---EE---SSHHHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEe---ee---CCHHHHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999999998 99999999999888753 44 99999999999999999963
No 21
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.83 E-value=4e-21 Score=143.41 Aligned_cols=70 Identities=19% Similarity=0.052 Sum_probs=61.5
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCE-eccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIE-SLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~-~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
...||||+||||||+. ..+|.|+++.+ ||+|++.|+|.|+|+|. .++.+ .| +|||+|||+||+.||..|.
T Consensus 6 ~~~D~KT~LQE~~Q~~-~~~P~Y~vv~~-GPdH~k~F~v~V~i~g~~~~g~G---~G---~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 6 LDMNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTG---VG---RNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CCTTHHHHHHHHHCCG-GGCCEEEEEEC-CCSSCCCEEEEEECTTCCEEEEE---EE---SSHHHHHHHHHHHHHHCHH
T ss_pred CCCCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEE---Ee---CCHHHHHHHHHHHHHHHHH
Confidence 3469999999999995 57899999876 99999999999999998 77653 44 9999999999999998765
No 22
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=133.79 Aligned_cols=72 Identities=24% Similarity=0.160 Sum_probs=63.3
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
-..++|+.||||||+++ .|.|+++.++||+|++.|+|.|.|+|..+ .+ .| +|||+|||.||+.||..|...
T Consensus 12 ~~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G---~G---~SKK~AEq~AA~~AL~~L~~~ 82 (91)
T 2l33_A 12 LTKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QG---AG---SNKKVAKAYAALAALEKLFPD 82 (91)
T ss_dssp CCSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EE---EE---SSHHHHHHHHHHHHHHHHCCC
T ss_pred hccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee---ee---CCHHHHHHHHHHHHHHHHhhc
Confidence 34589999999999997 88999999999999999999999999775 32 44 999999999999999999754
Q ss_pred C
Q 032079 138 G 138 (147)
Q Consensus 138 g 138 (147)
+
T Consensus 83 ~ 83 (91)
T 2l33_A 83 T 83 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 23
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.80 E-value=9.5e-20 Score=141.72 Aligned_cols=77 Identities=18% Similarity=0.072 Sum_probs=67.9
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 56 APNKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 56 ~~~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
.....|||++||||||++++. |.|+++.++||+|.+.|++.|+|+|..++.+ . |+|||+|||.||+.||..|.
T Consensus 9 ~~~~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G---~---G~sKK~Aeq~AA~~al~~L~ 81 (179)
T 1qu6_A 9 DLSAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEG---E---GRSKKEAKNAAAKLAVEILN 81 (179)
T ss_dssp CSSSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEE---E---CCSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEec---C---CCCHHHHHHHHHHHHHHHHh
Confidence 345579999999999999986 8999998999999999999999999877643 3 49999999999999999998
Q ss_pred hCCC
Q 032079 136 HLGY 139 (147)
Q Consensus 136 ~~g~ 139 (147)
..+.
T Consensus 82 ~~~~ 85 (179)
T 1qu6_A 82 KEKK 85 (179)
T ss_dssp SCCS
T ss_pred cccc
Confidence 6653
No 24
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.80 E-value=1.2e-19 Score=136.65 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=62.6
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCC-CCHHHHHHHHHHHHHHHHH
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQ-SKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g-~SKK~AEq~AA~~AL~~L~ 135 (147)
...||||+||||||++++.+|.|+++.+ +|++.|+|.|+|+|..++. | .| +|||+|||.||+.||..|.
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---~H~~~F~v~V~v~g~~~g~-----G-~G~~SKK~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQKYQS-----T-LWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTEEEEE-----S-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee---cCCCcEEEEEEECCEEEEE-----E-eccCCHHHHHHHHHHHHHHHHh
Confidence 3569999999999999999999998866 9999999999999988864 5 46 9999999999999999995
No 25
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.78 E-value=8.1e-19 Score=118.42 Aligned_cols=67 Identities=24% Similarity=0.205 Sum_probs=58.9
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
...||++.||||| .+|.|+++.++||+|++.|+|.|.|+|..+ .+ .| +|||+|||.||+.||..|..
T Consensus 2 ~~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G---~G---~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 2 SGKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EG---SG---RNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CSSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EE---EE---SSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EE---ee---CCHHHHHHHHHHHHHHHHHh
Confidence 4579999999993 689999999999999999999999999754 22 44 99999999999999999875
No 26
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.75 E-value=2e-18 Score=137.42 Aligned_cols=71 Identities=28% Similarity=0.291 Sum_probs=64.7
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
..|||+.||||||++++.+|.|+++.++||+|.+.|+|.|+|+|. ++.+ .| +|||+|||.||+.||..|..
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G---~G---~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLG---EG---KSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE---EE---SSHHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEE---ec---CCHHHHHHHHHHHHHHHhhc
Confidence 579999999999999999999999999999999999999999998 7653 44 99999999999999999863
No 27
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.74 E-value=4.7e-18 Score=138.19 Aligned_cols=73 Identities=26% Similarity=0.245 Sum_probs=65.9
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
...|||+.||||||++++..|.|+++.++||+|.+.|+|.|+|+|..++.+ .| +|||+|||.||+.||..|..
T Consensus 177 ~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G---~G---~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 177 MLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG---KG---RTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp CCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE---EE---SSHHHHHHHHHHHHHHHHC-
T ss_pred cccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEE---ee---CCHHHHHHHHHHHHHHHHhh
Confidence 357999999999999999999999999999999999999999999887653 44 99999999999999999864
No 28
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=114.76 Aligned_cols=68 Identities=25% Similarity=0.207 Sum_probs=57.5
Q ss_pred ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
+.|+.|++|+|.+ ..|.|+++.++||+|++.|++.|.|+|..+ .+ .| +|||+|||.||+.||..|...
T Consensus 5 ~~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G---~G---~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 5 HGKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QG---AG---SNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp -CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EE---EE---SSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EE---EE---CCHHHHHHHHHHHHHHHHHcc
Confidence 3566777777775 588999999999999999999999999876 32 44 999999999999999999654
No 29
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=133.27 Aligned_cols=72 Identities=26% Similarity=0.181 Sum_probs=65.4
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
...||||.||||||++++.+|.|+++.++||+ +.|+|.|+|+|..++.+ .| +|||+|||.||+.||..|...
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G---~G---~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG---TA---SSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEE---EE---SSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeec---CC---CCHHHHHHHHHHHHHHHHHhh
Confidence 56799999999999999999999999999999 99999999999888653 44 999999999999999999753
No 30
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.68 E-value=3.1e-18 Score=139.65 Aligned_cols=73 Identities=26% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHh
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEH 136 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~ 136 (147)
...|||+.||||||++++.+|.|+++.++||+|.+.|+|.|+|+|..++. | .|+|||+|||.||+.||..|+.
T Consensus 175 ~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~-----G-~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 175 LIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELAR-----A-IAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEE-----e-eeCCHHHHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999999999999999999999987764 4 3599999999999999998864
No 31
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.65 E-value=9.6e-18 Score=135.09 Aligned_cols=73 Identities=32% Similarity=0.304 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCC
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLG 138 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g 138 (147)
..|||+.||||||++++..|.|+++. +||+|.+.|+|.|+|+|..++. | .|+|||+||+.||+.||..|...+
T Consensus 161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~Gp~h~~~F~v~v~v~g~~~~~-----G-~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 161 GLDWKTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGS-----G-VGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCChHHHHHHHHHHhCCCCCeEEEec-cCCCCCCeEEEEEEECCEEEEE-----e-eeCCHHHHHHHHHHHHHHHHhhcc
Confidence 57999999999999999999999887 9999999999999999987764 4 359999999999999999997654
No 32
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.64 E-value=6e-16 Score=125.41 Aligned_cols=71 Identities=24% Similarity=0.218 Sum_probs=63.5
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
...|||++|||| +..|.|+++.++||+|++.|++.|.|+|..+ .+ .| +|||+|||.||+.||..|...
T Consensus 159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G---~G---~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EG---SG---RNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EE---EE---SSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-Ee---ee---CCHHHHHHHHHHHHHHHHccc
Confidence 467999999999 5789999999999999999999999999764 32 44 999999999999999999888
Q ss_pred CCC
Q 032079 138 GYF 140 (147)
Q Consensus 138 g~~ 140 (147)
.++
T Consensus 227 ~~~ 229 (236)
T 2l3j_A 227 HLL 229 (236)
T ss_dssp CSS
T ss_pred cch
Confidence 877
No 33
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.60 E-value=2.4e-15 Score=116.79 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=63.0
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
...||++.||||||+++|.+ .|++ .++||+|.+.|++.|.|++..++.+ . |+|||+|++.||+.||..|...
T Consensus 102 ~~~n~~~~L~E~~qk~~~~~-~Y~~-~~~G~~h~~~F~~~v~v~~~~~~~g---~---g~sKK~Ak~~AA~~al~~L~~~ 173 (179)
T 1qu6_A 102 SMGNYIGLINRIAQKKRLTV-NYEQ-CASGVHGPEGFHYKCKMGQKEYSIG---T---GSTKQEAKQLAAKLAYLQILSE 173 (179)
T ss_dssp CCCCCHHHHHHHHHHSCCEE-EEEE-EEECSSSSSEEEEEEEEETTBCCEE---E---ESSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhcCCcc-eEEe-cCcCCCCCCeEEEEEEECCEEEeeE---E---ECCHHHHHHHHHHHHHHHHhcc
Confidence 46799999999999999976 9996 5789999999999999999876542 3 4999999999999999999754
No 34
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.57 E-value=7.3e-15 Score=119.02 Aligned_cols=70 Identities=26% Similarity=0.255 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhC
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHL 137 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~ 137 (147)
..|+|+.|++|++. +..|.|+++.++||+|++.|+|+|+|+|..+ .+ .| +|||+|||.||+.||..|...
T Consensus 3 ~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G---~G---~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG---SG---PTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EE---EE---SHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EE---ec---CChHHHHHHHHHHHHHHHHhc
Confidence 36899999999986 5789999999999999999999999999774 32 44 999999999999999999764
No 35
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=121.56 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=53.3
Q ss_pred CCCChhHHHHHHHHhcCCCCCeEE--EeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 58 NKVSAKSKLHEICAANHWKPPSFD--CCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~~~P~Ye--l~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
...|||++||| ||+++|.+|.|+ ++.++||+|.+.|+|.|. + .++ .| .|+|||+|||.||+.||..|.
T Consensus 128 ~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~-~~~-----~G-~G~sKK~Aeq~AA~~aL~~L~ 197 (232)
T 2yt4_A 128 GLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K-HTV-----RG-WCKNKRVGKQLASQKILQLLH 197 (232)
T ss_dssp TCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T-EEE-----EE-EESSHHHHHHHHHHHHHHHHS
T ss_pred CCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E-EEE-----EE-EeCCHHHHHHHHHHHHHHHHH
Confidence 45799999999 999999999999 788899999999999886 2 222 23 249999999999999999996
Q ss_pred h
Q 032079 136 H 136 (147)
Q Consensus 136 ~ 136 (147)
.
T Consensus 198 ~ 198 (232)
T 2yt4_A 198 P 198 (232)
T ss_dssp T
T ss_pred h
Confidence 4
No 36
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.39 E-value=2.8e-14 Score=121.70 Aligned_cols=69 Identities=23% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHHhcCCCC-CeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHH
Q 032079 57 PNKVSAKSKLHEICAANHWKP-PSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 57 ~~~~d~KS~LQE~~Qk~~~~~-P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~ 135 (147)
....|||++||||||++++.. |.|+++.++|| |+|.|+|+|..++. | .|+|||+|||.||+.||..|.
T Consensus 251 ~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~-----G-~G~SKK~AEq~AA~~AL~~L~ 319 (341)
T 3rv0_A 251 PLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDE-----A-EGNSIREAEHRAAMKVLENDE 319 (341)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEE-----E-EeCCHHHHHHHHHHHHHHHhh
Confidence 456799999999999998755 69999888887 99999999988765 3 359999999999999999886
Q ss_pred h
Q 032079 136 H 136 (147)
Q Consensus 136 ~ 136 (147)
.
T Consensus 320 ~ 320 (341)
T 3rv0_A 320 L 320 (341)
T ss_dssp -
T ss_pred h
Confidence 4
No 37
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.14 E-value=5.2e-11 Score=96.53 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=51.0
Q ss_pred ChhHHHHHHHHhcCCCCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCC
Q 032079 61 SAKSKLHEICAANHWKPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLG 138 (147)
Q Consensus 61 d~KS~LQE~~Qk~~~~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g 138 (147)
+||+.||||+|.... .+.| ...|+.|.+.|+|.|.|++..++.+ .| +|||+|||.||+.||..|...+
T Consensus 198 ~~k~~l~el~~~~~~-~~~~---~~~~~~~~~~f~v~v~v~~~~~~~G---~G---~SkK~Aeq~AA~~AL~~l~~~~ 265 (265)
T 3c4b_A 198 VPRSPVRELLEMEPE-TAKF---SPAERTYDGKVRVTVEVVGKGKFKG---VG---RSYRIAKSAAARRALRSLKANQ 265 (265)
T ss_dssp SCCCHHHHHHHHCTT-TEEE---CCCEECTTSCEEEEEEETTTEEEEE---EE---SSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHhccC-Ccee---eeccccCCCcEEEEEEEecceEEEE---ee---CCHHHHHHHHHHHHHHHHhhCc
Confidence 456666666666532 2333 3456789999999999999776643 44 9999999999999999997653
No 38
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=97.32 E-value=0.00047 Score=49.40 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHhcCC-----CCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHH
Q 032079 60 VSAKSKLHEICAANHW-----KPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYL 134 (147)
Q Consensus 60 ~d~KS~LQE~~Qk~~~-----~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L 134 (147)
.+..+.|+.||++.-. ..|.|.+.+.+.. ...| |+|.+.... . .-...|.+.++||.|++.||-.|...|
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~--~~~~-c~v~LP~~s-p-lr~i~g~~~~sk~~AK~sAAf~Ac~~L 78 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEF--GGTI-CRITLPANA-P-ISEIESSLLPSTEAAKKDACLKAVHEL 78 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGG--GCEE-EEEECCTTC-S-SCCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeecC--CCeE-EEEECCCCC-C-CCeeeCCccccHHHHHHHHHHHHHHHH
Confidence 4678999999999742 5689996444322 2467 999996521 1 112246667999999999999999999
Q ss_pred HhCCCC
Q 032079 135 EHLGYF 140 (147)
Q Consensus 135 ~~~g~~ 140 (147)
.+.|.|
T Consensus 79 ~~~G~L 84 (102)
T 2kou_A 79 HNLGVL 84 (102)
T ss_dssp HHHCSC
T ss_pred HHCCCC
Confidence 999977
No 39
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.63 E-value=0.03 Score=41.45 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=47.5
Q ss_pred CCCChhHHHHHHHHhcCC-----CCCeEEEeceeCCCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHH
Q 032079 58 NKVSAKSKLHEICAANHW-----KPPSFDCCQEEGPCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALW 132 (147)
Q Consensus 58 ~~~d~KS~LQE~~Qk~~~-----~~P~Yel~~e~GP~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~ 132 (147)
+.-.||+.|.-..|.--. ....|.. .+|+. .+.-|+++.....- .+++.| +.|-+||..||..|+.
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~--t~g~k-~K~~tl~l~WP~~m---ef~a~G---~rK~eAE~kAAA~AC~ 85 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVH--TNGPK-KKKVTLHIKWPKSV---EVEGYG---SKKIDAERQAAAAACQ 85 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEE--CCSSS-SEEEEEEECSSSCE---EEEEEE---SSHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEe--ecCCc-eeEEEEEecCCCcE---EEEeec---cchHHHHHHHHHHHHH
Confidence 345799999998876422 2224543 23322 23334443333321 233445 9999999999999999
Q ss_pred HHHhCCCC
Q 032079 133 YLEHLGYF 140 (147)
Q Consensus 133 ~L~~~g~~ 140 (147)
.|+..|++
T Consensus 86 kLK~Lgll 93 (119)
T 2db2_A 86 LFKGWGLL 93 (119)
T ss_dssp HHHHHTSS
T ss_pred HHHHcCcc
Confidence 99999998
No 40
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=92.85 E-value=0.16 Score=48.66 Aligned_cols=69 Identities=20% Similarity=0.084 Sum_probs=43.2
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEeceeCC-----------CCC-ceEEEEEEECCEeccccceeecCCCCCHHHHHHHH
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEEGP-----------CYR-KLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHA 126 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~GP-----------~H~-k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~A 126 (147)
...||-.++ ||.|- -+.|.+.+.... ..- -.|.|.+-+.+-- .+ .| .-+.||+|||.|
T Consensus 16 ~~~pk~~~~---q~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~--~~---~~-~~~~kkd~eq~a 85 (950)
T 3htx_A 16 TPTPKAIIH---QKFGA-KASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFS--VV---SN-VFKKKKDSEQSA 85 (950)
T ss_dssp CCCCHHHHH---HTTGG-GSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCE--EE---CC-CBSCHHHHHHHH
T ss_pred CCCHHHHHH---HHhCc-ceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCce--Ee---cc-hhhccccHHHHH
Confidence 346887765 44443 368987544321 112 3777777776522 21 23 458999999999
Q ss_pred HHHHHHHHHhC
Q 032079 127 AEGALWYLEHL 137 (147)
Q Consensus 127 A~~AL~~L~~~ 137 (147)
|+.||++|..+
T Consensus 86 a~~al~~~g~~ 96 (950)
T 3htx_A 86 AELALDKLGIR 96 (950)
T ss_dssp HHHHHTTTTST
T ss_pred HHHHHHHhCCC
Confidence 99998776543
No 41
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=53.50 E-value=21 Score=22.81 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcc
Q 032079 117 SKKKTAAEHAAEGALWYLEHLGYFPIR 143 (147)
Q Consensus 117 ~SKK~AEq~AA~~AL~~L~~~g~~p~~ 143 (147)
+.||+||.-|| -.++.+...||--|+
T Consensus 11 rtkkeaekfaa-ilikvfaelgyndin 36 (62)
T 2gjh_A 11 RTKKEAEKFAA-ILIKVFAELGYNDIN 36 (62)
T ss_dssp SSHHHHHHHHH-HHHHHHHHTTCCSCE
T ss_pred cchhHHHHHHH-HHHHHHHHhCcccce
Confidence 88999999999 556677788886554
No 42
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=31.20 E-value=1.3e+02 Score=20.82 Aligned_cols=53 Identities=23% Similarity=0.209 Sum_probs=36.7
Q ss_pred CCCCceEEEEEEECCEeccccceeecCCCCCHHHHHHHHHHHHHHHHHhCCCCCccc
Q 032079 88 PCYRKLFTFKVTFEIESLNTILECFGAPQSKKKTAAEHAAEGALWYLEHLGYFPIRK 144 (147)
Q Consensus 88 P~H~k~Ftv~V~V~~~~~~~~~~~~G~~g~SKK~AEq~AA~~AL~~L~~~g~~p~~~ 144 (147)
|...+.|.++-.++|+..-..+... +.-|=++|.+.|.+ +..+-..|..|.++
T Consensus 32 psG~K~w~~rYr~~GK~~~~~LG~y--p~~SLa~AR~~a~~--~r~~l~~GiDP~~~ 84 (108)
T 3ju0_A 32 PNGSKYWRLSYRFEKKQRLLALGVY--PAVSLADARQRRDE--AKKLLAAGIDPSAK 84 (108)
T ss_dssp TTSCEEEEEEEEETTEEEEEEEEEE--TTSCHHHHHHHHHH--HHHHHHTTCCGGGS
T ss_pred cCCCEEEEEEEEEcCceEEEecCCC--CCCCHHHHHHHHHH--HHHHHHcCCCHHHH
Confidence 5678999999999987654332222 24678888887763 44566889988764
No 43
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=30.04 E-value=1e+02 Score=29.61 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=46.5
Q ss_pred CCChhHHHHHHHHhcCCCCCeEEEecee--------------------------------CCCCCceEEEEEEECCEecc
Q 032079 59 KVSAKSKLHEICAANHWKPPSFDCCQEE--------------------------------GPCYRKLFTFKVTFEIESLN 106 (147)
Q Consensus 59 ~~d~KS~LQE~~Qk~~~~~P~Yel~~e~--------------------------------GP~H~k~Ftv~V~V~~~~~~ 106 (147)
.-.|+..|-.+|+.++...|.|.+.... +|+--..|.|+|.|--+.-.
T Consensus 393 g~~pr~~l~~fc~~~~l~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~~~~~~~~~~ 472 (950)
T 3htx_A 393 GPLPREILGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKKLKVSGVDDANENLSRQKEDTPGLGHGFRCEVKIFTKSQD 472 (950)
T ss_dssp SSCHHHHHHHHHHTTTCCCCEEECCC--------------------------------------------CEEEEEETTE
T ss_pred CCChHHHHHHHHHHhhcCcceeeeccCccccccccccccccccccccchhhhcCCcccCCCCCcccceEEEEEEEecccc
Confidence 4468999999999999999999843322 12112239999888433211
Q ss_pred ccceeecCCC-CCHHHHHHHHHHHHHHHHH
Q 032079 107 TILECFGAPQ-SKKKTAAEHAAEGALWYLE 135 (147)
Q Consensus 107 ~~~~~~G~~g-~SKK~AEq~AA~~AL~~L~ 135 (147)
-.++|..... ++.-+|=|.|+-++|..|.
T Consensus 473 ~~~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 502 (950)
T 3htx_A 473 LVLECSPRKFYEKENDAIQNASLKALLWFS 502 (950)
T ss_dssp EEEEECCSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhccChhhhhhhccHHHHHHHHHHHHHHH
Confidence 2345543222 5567899999999988875
No 44
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=29.73 E-value=17 Score=33.80 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=15.5
Q ss_pred CCCCCh-hHHHHHHHHhcCC
Q 032079 57 PNKVSA-KSKLHEICAANHW 75 (147)
Q Consensus 57 ~~~~d~-KS~LQE~~Qk~~~ 75 (147)
....|| |++||||||+++.
T Consensus 444 ~~~~Dp~Kt~LqE~~q~~~i 463 (756)
T 2qvw_A 444 SACPDAVTKASKRVCMGEAG 463 (756)
T ss_dssp -CCCHHHHHHHHHHHTSCCC
T ss_pred ccccCchHHHHHHHHhccch
Confidence 456788 9999999998875
No 45
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=29.72 E-value=55 Score=22.79 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCc
Q 032079 117 SKKKTAAEHAAEGALWYLEHLGYFPI 142 (147)
Q Consensus 117 ~SKK~AEq~AA~~AL~~L~~~g~~p~ 142 (147)
+.||+||.-|| -.++.+...||--|
T Consensus 55 rtkkeaekfaa-ilikvfaelgyndi 79 (106)
T 1qys_A 55 RTKKEAEKFAA-ILIKVFAELGYNDI 79 (106)
T ss_dssp SSHHHHHHHHH-HHHHHHHHTTCCEE
T ss_pred cchhHHHHHHH-HHHHHHHHhCCcce
Confidence 78999999999 45666778887544
No 46
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=22.99 E-value=40 Score=21.88 Aligned_cols=15 Identities=13% Similarity=0.527 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCCCCe
Q 032079 65 KLHEICAANHWKPPS 79 (147)
Q Consensus 65 ~LQE~~Qk~~~~~P~ 79 (147)
...+||+++||..|.
T Consensus 33 eV~~YC~~kGwIiP~ 47 (60)
T 1ng7_A 33 EVRDYCEKKGWIVNI 47 (60)
T ss_dssp HHHHHHHHHTCCCCC
T ss_pred HHHHHHHHCCceecc
Confidence 568999999998884
Done!