Query 032081
Match_columns 147
No_of_seqs 110 out of 1162
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 09:21:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 7.1E-31 1.5E-35 163.4 16.9 144 2-146 11-156 (160)
2 KOG0027 Calmodulin and related 100.0 4.7E-28 1E-32 152.9 16.2 142 5-146 2-149 (151)
3 PTZ00184 calmodulin; Provision 99.9 6.5E-26 1.4E-30 142.7 17.4 146 1-146 1-148 (149)
4 PTZ00183 centrin; Provisional 99.9 6.6E-25 1.4E-29 139.5 17.1 144 3-146 9-154 (158)
5 KOG0028 Ca2+-binding protein ( 99.9 1.4E-24 3.1E-29 132.8 15.2 144 3-146 25-170 (172)
6 KOG0031 Myosin regulatory ligh 99.9 2.1E-22 4.6E-27 122.5 16.0 140 4-145 25-164 (171)
7 KOG0030 Myosin essential light 99.9 8.9E-22 1.9E-26 117.9 12.7 141 5-146 5-151 (152)
8 KOG0034 Ca2+/calmodulin-depend 99.9 8.6E-21 1.9E-25 122.1 15.3 141 4-146 26-175 (187)
9 KOG0037 Ca2+-binding protein, 99.8 1.2E-18 2.6E-23 112.2 13.9 128 11-145 57-187 (221)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 4.1E-18 8.9E-23 109.8 14.4 140 4-146 22-175 (193)
11 KOG0036 Predicted mitochondria 99.7 1.5E-16 3.3E-21 111.0 14.7 137 3-145 6-145 (463)
12 PLN02964 phosphatidylserine de 99.5 2.7E-13 5.8E-18 101.5 13.1 102 4-110 136-243 (644)
13 cd05022 S-100A13 S-100A13: S-1 99.5 5E-14 1.1E-18 80.6 6.9 64 82-145 8-74 (89)
14 PF13499 EF-hand_7: EF-hand do 99.5 9.6E-14 2.1E-18 75.6 7.7 62 83-144 1-66 (66)
15 KOG4223 Reticulocalbin, calume 99.5 1.2E-13 2.6E-18 94.0 9.3 134 9-142 161-301 (325)
16 KOG0377 Protein serine/threoni 99.5 4.7E-13 1E-17 94.7 11.5 134 12-145 465-614 (631)
17 KOG0038 Ca2+-binding kinase in 99.5 1.7E-12 3.7E-17 79.0 11.6 140 5-146 22-177 (189)
18 KOG0037 Ca2+-binding protein, 99.5 5.9E-13 1.3E-17 86.2 9.0 91 9-106 122-216 (221)
19 cd05027 S-100B S-100B: S-100B 99.4 8.2E-13 1.8E-17 75.7 7.7 64 82-145 8-78 (88)
20 KOG4223 Reticulocalbin, calume 99.4 5.7E-12 1.2E-16 86.0 9.6 138 8-145 74-227 (325)
21 KOG0044 Ca2+ sensor (EF-Hand s 99.4 1.2E-11 2.6E-16 80.0 10.6 118 27-146 8-128 (193)
22 KOG0027 Calmodulin and related 99.4 1.8E-11 3.8E-16 77.3 10.9 99 47-146 8-113 (151)
23 cd05029 S-100A6 S-100A6: S-100 99.4 6.4E-12 1.4E-16 72.0 7.6 64 82-145 10-78 (88)
24 cd05031 S-100A10_like S-100A10 99.3 8.6E-12 1.9E-16 72.6 7.4 65 82-146 8-79 (94)
25 COG5126 FRQ1 Ca2+-binding prot 99.3 9E-11 2E-15 73.7 12.2 102 43-146 13-120 (160)
26 cd05025 S-100A1 S-100A1: S-100 99.3 1.3E-11 2.8E-16 71.6 7.7 65 82-146 9-80 (92)
27 PF13833 EF-hand_8: EF-hand do 99.3 1.2E-11 2.7E-16 64.5 6.6 52 95-146 1-53 (54)
28 cd05026 S-100Z S-100Z: S-100Z 99.3 1.6E-11 3.4E-16 71.2 7.7 65 82-146 10-81 (93)
29 PTZ00183 centrin; Provisional 99.3 9.5E-11 2.1E-15 74.3 11.9 97 48-145 18-117 (158)
30 KOG0040 Ca2+-binding actin-bun 99.3 9.3E-11 2E-15 93.0 13.3 135 3-145 2245-2397(2399)
31 cd00052 EH Eps15 homology doma 99.3 3E-11 6.6E-16 65.8 7.3 59 85-145 2-60 (67)
32 cd05027 S-100B S-100B: S-100B 99.3 4.6E-11 9.9E-16 68.5 7.9 68 7-74 4-80 (88)
33 PTZ00184 calmodulin; Provision 99.3 2.6E-10 5.6E-15 71.5 12.0 96 49-145 13-111 (149)
34 cd05022 S-100A13 S-100A13: S-1 99.3 3.1E-11 6.7E-16 69.1 7.0 68 7-74 4-76 (89)
35 PF13499 EF-hand_7: EF-hand do 99.3 2E-11 4.3E-16 66.4 5.8 59 12-70 1-65 (66)
36 cd00213 S-100 S-100: S-100 dom 99.3 4.1E-11 8.8E-16 68.9 7.0 65 82-146 8-79 (88)
37 smart00027 EH Eps15 homology d 99.2 6.9E-11 1.5E-15 69.0 7.9 63 81-145 9-71 (96)
38 smart00027 EH Eps15 homology d 99.2 1.2E-10 2.6E-15 68.0 8.2 69 4-74 3-73 (96)
39 cd00051 EFh EF-hand, calcium b 99.2 1.5E-10 3.3E-15 61.6 7.8 61 84-144 2-62 (63)
40 cd05023 S-100A11 S-100A11: S-1 99.2 2.3E-10 4.9E-15 65.7 7.6 64 82-145 9-79 (89)
41 cd00252 SPARC_EC SPARC_EC; ext 99.2 2E-10 4.3E-15 68.9 7.5 60 82-145 48-107 (116)
42 cd05029 S-100A6 S-100A6: S-100 99.1 5.2E-10 1.1E-14 64.1 7.9 68 7-74 6-80 (88)
43 cd05025 S-100A1 S-100A1: S-100 99.1 5.7E-10 1.2E-14 64.6 7.9 68 7-74 5-81 (92)
44 PF14658 EF-hand_9: EF-hand do 99.1 4.2E-10 9.1E-15 60.0 6.5 61 86-146 2-64 (66)
45 cd05026 S-100Z S-100Z: S-100Z 99.1 8.9E-10 1.9E-14 63.9 7.9 68 7-74 6-82 (93)
46 PLN02964 phosphatidylserine de 99.1 2.3E-09 4.9E-14 80.9 11.6 117 26-146 119-243 (644)
47 cd05031 S-100A10_like S-100A10 99.1 8.6E-10 1.9E-14 64.1 7.5 66 8-73 5-79 (94)
48 cd00213 S-100 S-100: S-100 dom 99.1 8E-10 1.7E-14 63.5 7.2 68 7-74 4-80 (88)
49 cd05030 calgranulins Calgranul 99.0 2E-09 4.3E-14 61.8 6.6 65 82-146 8-79 (88)
50 KOG2562 Protein phosphatase 2 99.0 8.9E-09 1.9E-13 73.7 10.8 125 14-142 281-420 (493)
51 KOG0034 Ca2+/calmodulin-depend 99.0 6.3E-09 1.4E-13 67.4 9.1 98 14-111 69-176 (187)
52 cd00052 EH Eps15 homology doma 99.0 3.7E-09 8.1E-14 57.4 6.7 59 14-74 2-62 (67)
53 KOG2643 Ca2+ binding protein, 99.0 5.4E-09 1.2E-13 74.3 8.9 129 13-146 320-453 (489)
54 cd00051 EFh EF-hand, calcium b 99.0 5.2E-09 1.1E-13 55.5 6.5 59 13-71 2-62 (63)
55 KOG0028 Ca2+-binding protein ( 98.9 3.3E-08 7.2E-13 61.4 10.4 98 12-110 70-170 (172)
56 PF13833 EF-hand_8: EF-hand do 98.9 6.2E-09 1.3E-13 54.2 6.0 49 24-72 1-52 (54)
57 cd05023 S-100A11 S-100A11: S-1 98.9 1.9E-08 4.1E-13 57.7 7.8 68 7-74 5-81 (89)
58 KOG0751 Mitochondrial aspartat 98.8 9.1E-08 2E-12 69.3 11.2 133 6-144 31-173 (694)
59 KOG2643 Ca2+ binding protein, 98.8 1.5E-07 3.3E-12 67.1 11.1 126 13-144 235-382 (489)
60 cd05030 calgranulins Calgranul 98.8 4.1E-08 8.9E-13 56.3 6.8 68 7-74 4-80 (88)
61 cd00252 SPARC_EC SPARC_EC; ext 98.8 3.7E-08 8.1E-13 59.1 6.8 59 9-71 46-106 (116)
62 KOG0031 Myosin regulatory ligh 98.7 8.4E-08 1.8E-12 59.3 7.1 59 82-144 32-90 (171)
63 KOG0041 Predicted Ca2+-binding 98.7 1.4E-07 3E-12 60.8 8.3 105 4-108 92-201 (244)
64 KOG4251 Calcium binding protei 98.7 1E-07 2.2E-12 63.4 7.7 135 10-144 100-307 (362)
65 KOG0041 Predicted Ca2+-binding 98.7 1.2E-07 2.5E-12 61.2 7.6 64 82-145 99-162 (244)
66 PF14658 EF-hand_9: EF-hand do 98.7 1E-07 2.2E-12 50.9 5.9 59 15-73 2-64 (66)
67 PF00036 EF-hand_1: EF hand; 98.7 4E-08 8.7E-13 44.2 3.6 25 85-109 3-27 (29)
68 PF00036 EF-hand_1: EF hand; 98.7 4E-08 8.7E-13 44.2 3.6 28 119-146 1-28 (29)
69 KOG0030 Myosin essential light 98.6 1.3E-07 2.9E-12 57.4 6.2 68 78-145 7-76 (152)
70 KOG0036 Predicted mitochondria 98.6 8.4E-07 1.8E-11 63.1 10.6 96 46-146 13-110 (463)
71 PF13405 EF-hand_6: EF-hand do 98.5 1.4E-07 3.1E-12 43.2 3.5 30 83-112 1-31 (31)
72 PF12763 EF-hand_4: Cytoskelet 98.5 2E-06 4.4E-11 50.7 8.1 62 80-144 8-69 (104)
73 PF13405 EF-hand_6: EF-hand do 98.5 1.7E-07 3.8E-12 42.9 2.7 30 12-41 1-31 (31)
74 KOG1707 Predicted Ras related/ 98.5 2.9E-06 6.3E-11 63.0 10.1 135 2-142 186-373 (625)
75 PRK12309 transaldolase/EF-hand 98.4 1.6E-06 3.5E-11 62.5 8.4 53 80-145 332-384 (391)
76 cd05024 S-100A10 S-100A10: A s 98.4 2.9E-06 6.2E-11 48.5 7.8 62 83-145 9-75 (91)
77 KOG0751 Mitochondrial aspartat 98.4 2.2E-06 4.9E-11 62.3 8.5 122 14-141 111-239 (694)
78 cd05024 S-100A10 S-100A10: A s 98.3 7.7E-06 1.7E-10 46.8 8.0 67 7-74 4-77 (91)
79 KOG0169 Phosphoinositide-speci 98.3 1.7E-05 3.8E-10 60.4 12.0 137 5-146 130-274 (746)
80 PF10591 SPARC_Ca_bdg: Secrete 98.3 4.5E-07 9.9E-12 54.3 2.1 62 80-143 52-113 (113)
81 PF12763 EF-hand_4: Cytoskelet 98.3 2.9E-06 6.2E-11 50.0 5.3 67 4-73 3-71 (104)
82 PF14788 EF-hand_10: EF hand; 98.2 7.7E-06 1.7E-10 41.3 5.6 47 99-145 2-48 (51)
83 KOG4666 Predicted phosphate ac 98.2 2.4E-06 5.3E-11 59.1 4.9 98 47-145 259-358 (412)
84 PF13202 EF-hand_5: EF hand; P 98.2 2.3E-06 4.9E-11 37.1 3.0 23 85-107 2-24 (25)
85 KOG1029 Endocytic adaptor prot 98.2 3.9E-05 8.5E-10 58.8 11.3 135 5-144 10-255 (1118)
86 KOG0040 Ca2+-binding actin-bun 98.1 8.4E-06 1.8E-10 66.2 6.3 65 83-147 2254-2325(2399)
87 KOG0046 Ca2+-binding actin-bun 98.1 1.6E-05 3.5E-10 58.3 7.1 73 2-75 10-87 (627)
88 PF13202 EF-hand_5: EF hand; P 98.0 1.1E-05 2.4E-10 34.8 3.5 25 120-144 1-25 (25)
89 KOG0038 Ca2+-binding kinase in 98.0 8.1E-05 1.8E-09 46.0 8.1 98 15-112 75-179 (189)
90 KOG0377 Protein serine/threoni 98.0 3E-05 6.5E-10 56.0 6.2 61 12-72 548-614 (631)
91 PF14788 EF-hand_10: EF hand; 97.9 7.2E-05 1.6E-09 37.8 5.1 45 28-72 2-48 (51)
92 PF09279 EF-hand_like: Phospho 97.8 0.00014 3.1E-09 41.1 6.3 62 84-146 2-69 (83)
93 KOG0046 Ca2+-binding actin-bun 97.7 0.00018 3.9E-09 53.0 6.8 63 82-145 19-84 (627)
94 KOG2562 Protein phosphatase 2 97.7 0.00013 2.9E-09 52.9 5.9 128 12-143 226-376 (493)
95 PRK12309 transaldolase/EF-hand 97.6 0.00034 7.3E-09 50.7 7.5 57 41-111 328-386 (391)
96 KOG0035 Ca2+-binding actin-bun 97.6 0.0011 2.4E-08 52.1 10.3 103 3-106 739-848 (890)
97 KOG4065 Uncharacterized conser 97.6 0.00044 9.5E-09 41.0 6.1 59 86-144 71-143 (144)
98 PF05042 Caleosin: Caleosin re 97.4 0.0025 5.5E-08 40.7 8.4 132 11-143 7-163 (174)
99 smart00054 EFh EF-hand, calciu 97.4 0.00029 6.3E-09 30.5 3.2 25 121-145 3-27 (29)
100 PF10591 SPARC_Ca_bdg: Secrete 97.3 5.6E-05 1.2E-09 45.3 0.4 49 55-106 64-112 (113)
101 KOG4065 Uncharacterized conser 97.3 0.0015 3.2E-08 38.8 5.8 64 4-69 62-141 (144)
102 smart00054 EFh EF-hand, calciu 97.2 0.00074 1.6E-08 29.1 3.4 27 84-110 2-28 (29)
103 KOG4251 Calcium binding protei 97.2 0.00065 1.4E-08 45.7 4.4 64 81-144 100-166 (362)
104 KOG4666 Predicted phosphate ac 97.2 0.0013 2.8E-08 46.0 5.7 102 9-112 257-361 (412)
105 PF08726 EFhand_Ca_insen: Ca2+ 96.6 0.00071 1.5E-08 36.7 0.5 57 80-144 4-67 (69)
106 PLN02952 phosphoinositide phos 96.5 0.059 1.3E-06 41.5 10.3 87 59-146 14-110 (599)
107 KOG1265 Phospholipase C [Lipid 96.4 0.11 2.3E-06 41.6 11.3 119 21-146 158-299 (1189)
108 KOG4578 Uncharacterized conser 96.4 0.0024 5.1E-08 44.8 2.3 65 79-145 330-397 (421)
109 KOG1955 Ral-GTPase effector RA 96.4 0.013 2.7E-07 43.6 5.7 61 82-144 231-291 (737)
110 PF09279 EF-hand_like: Phospho 96.1 0.03 6.6E-07 31.4 5.5 60 13-73 2-69 (83)
111 KOG0042 Glycerol-3-phosphate d 95.9 0.024 5.2E-07 42.9 5.4 75 3-77 585-661 (680)
112 PF09069 EF-hand_3: EF-hand; 95.7 0.18 3.9E-06 28.9 7.5 62 82-146 3-75 (90)
113 KOG3866 DNA-binding protein of 95.6 0.041 9E-07 38.6 5.4 62 83-144 245-322 (442)
114 KOG4347 GTPase-activating prot 95.6 0.024 5.1E-07 43.4 4.5 77 62-139 535-611 (671)
115 KOG1955 Ral-GTPase effector RA 95.5 0.071 1.5E-06 39.8 6.5 72 4-77 224-297 (737)
116 KOG3555 Ca2+-binding proteogly 95.5 0.035 7.5E-07 39.4 4.7 61 81-145 249-309 (434)
117 PF05517 p25-alpha: p25-alpha 95.3 0.23 4.9E-06 31.6 7.7 56 90-145 10-68 (154)
118 KOG1264 Phospholipase C [Lipid 95.3 0.25 5.3E-06 39.4 8.9 142 5-146 137-293 (1267)
119 KOG2243 Ca2+ release channel ( 95.2 0.044 9.6E-07 45.8 5.0 57 87-144 4062-4118(5019)
120 KOG1029 Endocytic adaptor prot 95.2 0.059 1.3E-06 42.3 5.4 62 10-73 194-257 (1118)
121 KOG0042 Glycerol-3-phosphate d 94.8 0.091 2E-06 39.9 5.4 63 83-145 594-656 (680)
122 KOG1707 Predicted Ras related/ 94.4 0.21 4.5E-06 38.2 6.4 67 4-74 308-378 (625)
123 PLN02952 phosphoinositide phos 94.3 0.94 2E-05 35.2 9.8 87 24-110 13-110 (599)
124 PF05517 p25-alpha: p25-alpha 94.0 0.36 7.7E-06 30.7 6.2 61 14-74 2-70 (154)
125 KOG4578 Uncharacterized conser 93.8 0.04 8.8E-07 38.9 1.8 57 55-111 343-399 (421)
126 PF09069 EF-hand_3: EF-hand; 93.8 0.72 1.6E-05 26.5 6.8 62 11-73 3-75 (90)
127 KOG0169 Phosphoinositide-speci 92.8 1.3 2.8E-05 35.0 8.5 85 55-144 146-230 (746)
128 PF05042 Caleosin: Caleosin re 92.6 0.75 1.6E-05 29.7 6.0 32 115-146 93-124 (174)
129 KOG0035 Ca2+-binding actin-bun 92.6 0.45 9.8E-06 38.3 6.0 65 82-146 747-816 (890)
130 KOG4347 GTPase-activating prot 91.1 1.6 3.5E-05 33.9 7.2 59 44-104 552-612 (671)
131 PF08414 NADPH_Ox: Respiratory 90.8 1.1 2.4E-05 26.1 4.8 61 9-74 28-93 (100)
132 KOG3866 DNA-binding protein of 90.8 1.8 4E-05 30.7 6.7 86 16-108 249-352 (442)
133 PF14513 DAG_kinase_N: Diacylg 90.7 2.8 6E-05 26.2 7.4 70 26-95 6-82 (138)
134 KOG2243 Ca2+ release channel ( 90.3 0.61 1.3E-05 39.7 4.7 57 16-73 4062-4120(5019)
135 PLN02222 phosphoinositide phos 90.0 1.9 4.2E-05 33.4 6.9 63 82-146 25-90 (581)
136 KOG3449 60S acidic ribosomal p 90.0 2.7 5.9E-05 24.9 6.3 44 85-128 4-47 (112)
137 KOG0998 Synaptic vesicle prote 89.6 0.64 1.4E-05 37.7 4.3 58 83-142 284-341 (847)
138 KOG2871 Uncharacterized conser 89.5 0.39 8.5E-06 34.7 2.8 57 81-137 308-365 (449)
139 cd07313 terB_like_2 tellurium 89.3 2.9 6.3E-05 24.3 6.1 79 25-105 13-95 (104)
140 PF11116 DUF2624: Protein of u 87.5 3.7 8E-05 23.3 5.8 40 97-136 13-52 (85)
141 PLN02228 Phosphoinositide phos 87.2 5 0.00011 31.2 7.5 29 45-73 22-50 (567)
142 PLN02230 phosphoinositide phos 86.4 5.7 0.00012 31.1 7.4 64 82-146 29-102 (598)
143 KOG3555 Ca2+-binding proteogly 86.1 2.6 5.7E-05 30.4 5.1 96 12-112 212-312 (434)
144 PF01023 S_100: S-100/ICaBP ty 84.8 2.6 5.6E-05 20.6 3.4 32 8-39 3-36 (44)
145 KOG0998 Synaptic vesicle prote 84.1 0.58 1.3E-05 37.9 1.4 70 4-75 276-347 (847)
146 PF12174 RST: RCD1-SRO-TAF4 (R 84.0 1.3 2.9E-05 24.1 2.4 48 60-111 7-54 (70)
147 KOG0039 Ferric reductase, NADH 84.0 3.8 8.1E-05 32.4 5.7 77 62-145 4-88 (646)
148 KOG2871 Uncharacterized conser 83.0 1.2 2.6E-05 32.3 2.5 64 10-73 308-374 (449)
149 PTZ00373 60S Acidic ribosomal 82.9 8 0.00017 23.2 6.3 52 86-142 7-58 (112)
150 PLN02223 phosphoinositide phos 82.7 11 0.00023 29.2 7.4 65 81-146 15-92 (537)
151 PF14513 DAG_kinase_N: Diacylg 82.3 2 4.4E-05 26.8 3.0 49 95-145 4-59 (138)
152 PF02761 Cbl_N2: CBL proto-onc 82.2 7.1 0.00015 22.1 6.3 68 44-112 4-72 (85)
153 PF00404 Dockerin_1: Dockerin 80.4 2.3 4.9E-05 17.3 1.9 14 92-105 1-14 (21)
154 PF08730 Rad33: Rad33; InterP 80.3 13 0.00029 24.0 9.7 40 4-44 7-46 (170)
155 PLN02228 Phosphoinositide phos 79.5 17 0.00037 28.4 7.6 57 13-71 26-90 (567)
156 cd05833 Ribosomal_P2 Ribosomal 78.6 12 0.00025 22.4 6.5 53 86-143 5-57 (109)
157 COG5069 SAC6 Ca2+-binding acti 77.7 6.9 0.00015 29.7 4.9 79 10-91 484-563 (612)
158 PF07308 DUF1456: Protein of u 75.4 11 0.00024 20.4 5.6 27 28-54 14-40 (68)
159 cd07313 terB_like_2 tellurium 75.4 6.5 0.00014 22.8 3.7 53 58-110 12-65 (104)
160 TIGR01848 PHA_reg_PhaR polyhyd 74.3 16 0.00034 21.7 5.1 66 55-131 13-82 (107)
161 PF07308 DUF1456: Protein of u 74.3 12 0.00025 20.3 4.8 30 99-128 14-43 (68)
162 PF07879 PHB_acc_N: PHB/PHA ac 74.2 11 0.00023 20.2 3.8 22 89-110 10-31 (64)
163 PF08461 HTH_12: Ribonuclease 74.0 7.7 0.00017 20.8 3.4 37 95-131 10-46 (66)
164 cd04411 Ribosomal_P1_P2_L12p R 72.4 18 0.00038 21.5 6.9 40 99-143 17-56 (105)
165 PF03672 UPF0154: Uncharacteri 72.0 13 0.00029 19.9 4.0 34 95-128 28-61 (64)
166 PF03979 Sigma70_r1_1: Sigma-7 71.2 6.4 0.00014 22.0 2.8 33 95-129 18-50 (82)
167 PF01885 PTS_2-RNA: RNA 2'-pho 71.2 20 0.00043 23.6 5.5 38 92-129 26-63 (186)
168 PLN00138 large subunit ribosom 70.7 21 0.00045 21.5 5.1 42 87-128 6-47 (113)
169 PF12419 DUF3670: SNF2 Helicas 70.2 11 0.00024 23.5 4.0 51 94-144 79-139 (141)
170 PF06163 DUF977: Bacterial pro 68.3 16 0.00034 22.5 4.1 48 1-54 1-48 (127)
171 PRK00523 hypothetical protein; 67.1 19 0.00041 19.7 3.9 35 94-128 35-69 (72)
172 TIGR00624 tag DNA-3-methyladen 66.5 30 0.00064 22.7 5.4 102 9-113 51-168 (179)
173 COG3763 Uncharacterized protei 66.4 19 0.00042 19.6 4.0 34 95-128 35-68 (71)
174 TIGR01639 P_fal_TIGR01639 Plas 66.3 16 0.00035 19.2 3.6 30 25-54 7-36 (61)
175 PF09336 Vps4_C: Vps4 C termin 66.0 14 0.0003 19.6 3.2 26 98-123 29-54 (62)
176 KOG4004 Matricellular protein 65.8 4.4 9.6E-05 26.9 1.6 55 88-144 193-248 (259)
177 PF12486 DUF3702: ImpA domain 65.8 26 0.00057 22.2 5.0 47 8-54 66-116 (148)
178 COG2818 Tag 3-methyladenine DN 62.7 22 0.00048 23.5 4.3 65 9-74 53-123 (188)
179 PF08976 DUF1880: Domain of un 62.3 10 0.00023 22.9 2.5 29 44-72 4-34 (118)
180 COG2058 RPP1A Ribosomal protei 61.9 32 0.00069 20.5 5.5 49 88-142 7-55 (109)
181 PF13623 SurA_N_2: SurA N-term 61.3 39 0.00084 21.3 7.6 78 59-143 46-144 (145)
182 PF02337 Gag_p10: Retroviral G 61.1 28 0.00061 20.0 4.1 22 106-127 16-37 (90)
183 PF08414 NADPH_Ox: Respiratory 61.0 32 0.00069 20.2 6.4 55 83-142 31-88 (100)
184 PLN02222 phosphoinositide phos 59.5 63 0.0014 25.5 6.9 59 12-72 26-89 (581)
185 PF05099 TerB: Tellurite resis 58.6 5.8 0.00013 24.3 1.2 78 24-103 36-117 (140)
186 PF01325 Fe_dep_repress: Iron 58.4 15 0.00033 19.2 2.6 43 5-54 2-44 (60)
187 PF09068 EF-hand_2: EF hand; 57.2 18 0.0004 22.2 3.1 28 83-110 98-125 (127)
188 PRK01844 hypothetical protein; 56.4 32 0.0007 18.9 3.9 35 94-128 34-68 (72)
189 TIGR03573 WbuX N-acetyl sugar 55.9 40 0.00087 24.5 5.2 43 96-144 300-342 (343)
190 PF00046 Homeobox: Homeobox do 55.9 26 0.00056 17.6 4.9 44 4-54 6-49 (57)
191 KOG2557 Uncharacterized conser 55.8 82 0.0018 23.4 8.7 55 56-111 69-123 (427)
192 TIGR02613 mob_myst_B mobile my 55.7 34 0.00073 22.5 4.4 50 93-144 126-185 (186)
193 PLN02230 phosphoinositide phos 55.7 67 0.0014 25.5 6.5 62 11-73 29-102 (598)
194 PF11116 DUF2624: Protein of u 55.4 37 0.00081 19.3 7.0 66 26-91 13-82 (85)
195 PHA02943 hypothetical protein; 55.1 54 0.0012 21.0 9.1 92 1-109 1-105 (165)
196 cd00076 H4 Histone H4, one of 54.3 39 0.00085 19.2 7.4 65 44-114 14-81 (85)
197 PF09068 EF-hand_2: EF hand; 54.2 49 0.0011 20.3 7.0 62 84-145 43-124 (127)
198 KOG3449 60S acidic ribosomal p 53.5 47 0.001 19.9 4.3 54 14-70 4-57 (112)
199 PF03732 Retrotrans_gag: Retro 53.2 38 0.00082 18.7 5.0 38 61-99 26-63 (96)
200 PRK06402 rpl12p 50S ribosomal 53.0 47 0.001 19.8 5.4 34 94-128 13-46 (106)
201 KOG4403 Cell surface glycoprot 52.6 89 0.0019 23.7 6.3 57 10-68 67-124 (575)
202 PF03556 Cullin_binding: Culli 52.1 44 0.00095 20.2 4.2 82 57-145 36-117 (117)
203 KOG2301 Voltage-gated Ca2+ cha 50.9 12 0.00025 33.0 2.0 69 4-74 1410-1485(1592)
204 PF07499 RuvA_C: RuvA, C-termi 49.8 32 0.00069 16.9 5.1 40 101-144 3-42 (47)
205 KOG2301 Voltage-gated Ca2+ cha 49.3 14 0.0003 32.6 2.2 65 81-145 1416-1483(1592)
206 KOG0506 Glutaminase (contains 48.6 72 0.0016 24.6 5.4 60 87-146 91-158 (622)
207 TIGR01565 homeo_ZF_HD homeobox 48.6 40 0.00086 17.6 4.1 35 4-43 7-45 (58)
208 cd00086 homeodomain Homeodomai 48.5 35 0.00077 17.0 5.5 45 3-54 5-49 (59)
209 PF13608 Potyvirid-P3: Protein 48.5 35 0.00077 25.9 4.0 65 8-74 286-356 (445)
210 PRK00819 RNA 2'-phosphotransfe 48.2 59 0.0013 21.3 4.6 36 93-128 28-63 (179)
211 PF07128 DUF1380: Protein of u 47.4 43 0.00093 21.0 3.6 30 100-129 28-57 (139)
212 PRK09430 djlA Dna-J like membr 47.2 98 0.0021 21.7 10.6 98 24-126 68-174 (267)
213 cd08324 CARD_NOD1_CARD4 Caspas 43.4 62 0.0014 18.4 4.6 45 59-109 27-71 (85)
214 PF09373 PMBR: Pseudomurein-bi 43.4 29 0.00062 15.6 1.9 15 96-110 2-16 (33)
215 PF01316 Arg_repressor: Argini 42.8 57 0.0012 17.7 4.0 33 97-129 18-50 (70)
216 PF06569 DUF1128: Protein of u 42.4 36 0.00078 18.6 2.4 7 29-35 55-61 (71)
217 PRK09430 djlA Dna-J like membr 41.8 77 0.0017 22.2 4.7 10 59-68 69-78 (267)
218 TIGR00135 gatC glutamyl-tRNA(G 41.3 68 0.0015 18.2 3.8 25 99-123 1-25 (93)
219 PRK10353 3-methyl-adenine DNA 40.8 79 0.0017 21.0 4.3 103 9-112 52-170 (187)
220 cd07316 terB_like_DjlA N-termi 40.6 72 0.0016 18.3 5.1 54 57-110 11-64 (106)
221 KOG1785 Tyrosine kinase negati 40.4 1.6E+02 0.0035 22.2 7.4 99 42-144 170-272 (563)
222 PF06648 DUF1160: Protein of u 40.0 89 0.0019 19.2 5.4 14 98-111 67-80 (122)
223 cd08330 CARD_ASC_NALP1 Caspase 39.5 70 0.0015 17.9 4.5 26 82-109 46-71 (82)
224 PHA02105 hypothetical protein 38.9 60 0.0013 16.9 3.5 46 99-144 5-55 (68)
225 PLN02508 magnesium-protoporphy 38.5 1.2E+02 0.0027 22.1 5.2 86 40-131 34-123 (357)
226 PF12091 DUF3567: Protein of u 38.4 65 0.0014 18.3 3.1 47 83-129 24-76 (85)
227 PRK00441 argR arginine repress 38.2 1E+02 0.0022 19.5 4.4 41 95-135 15-59 (149)
228 COG1460 Uncharacterized protei 37.7 77 0.0017 19.2 3.5 29 100-128 81-109 (114)
229 cd05831 Ribosomal_P1 Ribosomal 36.9 91 0.002 18.4 4.4 44 94-142 13-56 (103)
230 PF08349 DUF1722: Protein of u 36.6 96 0.0021 18.6 5.5 40 105-144 56-95 (117)
231 TIGR02675 tape_meas_nterm tape 35.3 34 0.00074 18.7 1.8 15 96-110 28-42 (75)
232 PRK00034 gatC aspartyl/glutamy 34.4 92 0.002 17.7 3.9 27 98-124 2-28 (95)
233 PF09107 SelB-wing_3: Elongati 34.2 68 0.0015 16.1 3.7 31 95-130 7-37 (50)
234 PF06384 ICAT: Beta-catenin-in 34.0 67 0.0014 18.0 2.7 21 103-123 21-41 (78)
235 PF04558 tRNA_synt_1c_R1: Glut 33.7 91 0.002 20.1 3.7 64 62-127 66-129 (164)
236 TIGR03685 L21P_arch 50S riboso 33.5 1.1E+02 0.0023 18.2 5.3 34 94-128 13-46 (105)
237 PF12631 GTPase_Cys_C: Catalyt 33.4 66 0.0014 17.4 2.7 45 83-127 24-72 (73)
238 PF10281 Ish1: Putative stress 33.3 58 0.0013 15.1 3.7 15 100-114 5-19 (38)
239 PF03352 Adenine_glyco: Methyl 33.3 66 0.0014 21.1 3.1 62 10-72 48-115 (179)
240 PF04157 EAP30: EAP30/Vps36 fa 33.3 1.5E+02 0.0033 20.0 7.3 14 31-44 61-74 (223)
241 PF09184 PPP4R2: PPP4R2; Inte 33.2 1.8E+02 0.0039 20.7 10.4 112 30-146 2-126 (288)
242 COG5562 Phage envelope protein 33.1 43 0.00092 20.9 2.0 47 96-146 54-100 (137)
243 cd08032 LARP_7 La RNA-binding 32.7 71 0.0015 18.0 2.7 37 18-54 30-66 (82)
244 COG4103 Uncharacterized protei 32.6 1.3E+02 0.0029 19.0 7.0 96 9-109 28-128 (148)
245 COG4359 Uncharacterized conser 32.1 1.6E+02 0.0035 19.8 7.1 49 23-76 9-58 (220)
246 PF02761 Cbl_N2: CBL proto-onc 32.1 1E+02 0.0022 17.6 6.1 49 95-143 19-67 (85)
247 PLN00035 histone H4; Provision 32.1 1.1E+02 0.0025 18.1 5.9 64 44-113 30-96 (103)
248 cd03035 ArsC_Yffb Arsenate Red 31.7 46 0.00099 19.5 2.0 14 99-112 36-49 (105)
249 PF09851 SHOCT: Short C-termin 30.9 58 0.0013 14.4 1.9 13 96-108 14-26 (31)
250 PF07199 DUF1411: Protein of u 30.7 1.7E+02 0.0036 19.6 6.0 64 8-71 119-184 (194)
251 PF02037 SAP: SAP domain; Int 30.7 63 0.0014 14.7 2.3 18 98-115 3-20 (35)
252 PF05383 La: La domain; Inter 30.5 23 0.0005 18.6 0.5 18 18-35 22-39 (61)
253 COG1321 TroR Mn-dependent tran 30.0 1.4E+02 0.0029 19.1 4.0 33 4-38 3-35 (154)
254 cd01047 ACSF Aerobic Cyclase S 30.0 2E+02 0.0043 20.9 5.0 87 39-131 17-107 (323)
255 cd00171 Sec7 Sec7 domain; Doma 29.9 1.6E+02 0.0036 19.2 10.4 39 91-129 142-182 (185)
256 TIGR02029 AcsF magnesium-proto 29.4 1.5E+02 0.0032 21.6 4.3 88 38-131 26-117 (337)
257 KOG0506 Glutaminase (contains 29.2 1.4E+02 0.0031 23.1 4.4 57 16-72 91-157 (622)
258 KOG4070 Putative signal transd 29.0 1.3E+02 0.0028 19.3 3.6 48 27-74 33-86 (180)
259 PF08671 SinI: Anti-repressor 28.9 61 0.0013 14.4 1.7 11 99-109 17-27 (30)
260 PF10437 Lip_prot_lig_C: Bacte 28.9 1.1E+02 0.0024 16.9 4.1 42 101-144 44-86 (86)
261 KOG4286 Dystrophin-like protei 28.8 3.4E+02 0.0074 22.6 6.6 39 16-54 475-513 (966)
262 PF02885 Glycos_trans_3N: Glyc 28.3 1E+02 0.0022 16.2 3.9 14 98-111 14-27 (66)
263 cd05832 Ribosomal_L12p Ribosom 27.9 1.4E+02 0.003 17.8 5.2 40 98-142 16-55 (106)
264 PF14164 YqzH: YqzH-like prote 27.9 1.1E+02 0.0023 16.4 3.7 27 13-39 10-37 (64)
265 KOG4629 Predicted mechanosensi 27.9 1.9E+02 0.0042 23.6 5.2 55 83-144 405-459 (714)
266 PF08044 DUF1707: Domain of un 27.8 95 0.002 15.8 2.7 30 95-124 20-49 (53)
267 CHL00185 ycf59 magnesium-proto 27.8 1.8E+02 0.004 21.3 4.6 89 37-131 31-123 (351)
268 KOG1954 Endocytosis/signaling 27.7 1.1E+02 0.0025 23.0 3.7 54 85-141 447-500 (532)
269 cd08033 LARP_6 La RNA-binding 27.6 1E+02 0.0022 17.2 2.8 36 19-54 26-61 (77)
270 smart00513 SAP Putative DNA-bi 27.5 72 0.0016 14.3 2.6 18 27-44 3-20 (35)
271 PF09312 SurA_N: SurA N-termin 27.5 1.3E+02 0.0027 18.0 3.5 11 135-145 99-109 (118)
272 PF11363 DUF3164: Protein of u 27.3 2E+02 0.0042 19.3 5.0 38 87-127 124-161 (195)
273 cd07176 terB tellurite resista 26.9 1.3E+02 0.0029 17.2 3.7 77 25-103 16-98 (111)
274 cd07894 Adenylation_RNA_ligase 26.6 2.6E+02 0.0057 20.5 6.0 24 21-44 135-158 (342)
275 COG4807 Uncharacterized protei 26.1 1.7E+02 0.0037 18.2 6.4 90 31-129 19-129 (155)
276 TIGR03798 ocin_TIGR03798 bacte 26.1 1.1E+02 0.0024 16.0 3.2 25 99-123 25-49 (64)
277 PRK04280 arginine repressor; P 26.0 1.5E+02 0.0032 18.8 3.7 38 97-134 17-58 (148)
278 PF13829 DUF4191: Domain of un 25.9 1.9E+02 0.0041 19.8 4.3 40 88-127 157-196 (224)
279 smart00549 TAFH TAF homology. 25.9 1.3E+02 0.0028 17.4 3.0 18 59-76 37-54 (92)
280 KOG4301 Beta-dystrobrevin [Cyt 25.8 1.3E+02 0.0029 22.1 3.7 63 83-146 111-173 (434)
281 PF02459 Adeno_terminal: Adeno 25.7 2.1E+02 0.0046 22.5 4.9 49 83-131 456-504 (548)
282 PF15144 DUF4576: Domain of un 25.6 34 0.00074 19.0 0.7 31 24-54 37-67 (88)
283 KOG2419 Phosphatidylserine dec 25.5 44 0.00096 26.7 1.4 63 83-145 438-532 (975)
284 PF13331 DUF4093: Domain of un 25.4 1.4E+02 0.0031 17.0 8.1 56 61-123 30-85 (87)
285 PF03250 Tropomodulin: Tropomo 25.3 58 0.0013 20.6 1.7 22 3-24 22-43 (147)
286 PF09278 MerR-DNA-bind: MerR, 25.3 1.1E+02 0.0024 15.7 3.1 18 107-126 9-26 (65)
287 PF09494 Slx4: Slx4 endonuclea 25.1 1.2E+02 0.0025 16.0 3.7 15 99-113 25-39 (64)
288 PF06207 DUF1002: Protein of u 25.1 1.9E+02 0.004 19.9 4.2 46 100-145 173-222 (225)
289 PF04963 Sigma54_CBD: Sigma-54 25.0 2.1E+02 0.0046 18.9 6.0 50 23-75 46-100 (194)
290 PF08355 EF_assoc_1: EF hand a 25.0 63 0.0014 17.9 1.6 17 127-143 11-27 (76)
291 PTZ00315 2'-phosphotransferase 24.9 2.5E+02 0.0053 22.5 5.2 38 92-129 399-436 (582)
292 KOG1264 Phospholipase C [Lipid 24.9 3.2E+02 0.007 23.1 5.9 101 44-145 137-248 (1267)
293 PRK03095 prsA peptidylprolyl i 24.6 1.9E+02 0.0041 20.5 4.4 18 57-74 30-47 (287)
294 KOG4286 Dystrophin-like protei 24.3 4.2E+02 0.0092 22.1 6.4 86 55-145 480-579 (966)
295 COG1859 KptA RNA:NAD 2'-phosph 23.8 2.4E+02 0.0053 19.2 4.6 62 57-128 28-89 (211)
296 PF08100 Dimerisation: Dimeris 23.4 45 0.00097 16.9 0.8 23 87-109 11-33 (51)
297 TIGR02574 stabl_TIGR02574 puta 23.3 1.3E+02 0.0028 15.8 3.7 11 13-23 12-22 (63)
298 PTZ00015 histone H4; Provision 23.3 1.7E+02 0.0038 17.3 7.0 65 43-113 30-97 (102)
299 COG0721 GatC Asp-tRNAAsn/Glu-t 23.2 1.7E+02 0.0036 17.0 3.7 26 98-123 2-27 (96)
300 PF13624 SurA_N_3: SurA N-term 23.2 1.8E+02 0.0039 17.9 3.7 47 99-145 84-131 (154)
301 PF07492 Trehalase_Ca-bi: Neut 23.1 22 0.00048 15.8 -0.3 14 89-102 6-19 (30)
302 PRK05066 arginine repressor; P 22.5 2.2E+02 0.0048 18.2 4.0 39 96-134 21-64 (156)
303 PRK13654 magnesium-protoporphy 22.4 2.6E+02 0.0056 20.6 4.6 89 37-131 35-127 (355)
304 PF06014 DUF910: Bacterial pro 22.3 1.4E+02 0.0031 15.9 3.4 45 100-144 3-52 (62)
305 PF12987 DUF3871: Domain of un 22.3 3.1E+02 0.0067 19.8 5.7 53 94-146 213-285 (323)
306 TIGR02736 cbb3_Q_epsi cytochro 22.1 96 0.0021 16.1 1.8 21 123-143 19-39 (56)
307 KOG1954 Endocytosis/signaling 21.9 1.7E+02 0.0036 22.2 3.6 25 83-107 478-502 (532)
308 cd08332 CARD_CASP2 Caspase act 21.9 1.7E+02 0.0037 16.6 3.9 10 135-144 66-75 (90)
309 PF13121 DUF3976: Domain of un 21.8 81 0.0018 14.7 1.4 21 20-40 7-27 (41)
310 COG1448 TyrB Aspartate/tyrosin 21.6 2.1E+02 0.0046 21.4 4.1 41 87-128 146-202 (396)
311 PF01799 Fer2_2: [2Fe-2S] bind 21.4 1.6E+02 0.0035 16.2 4.3 64 6-70 7-72 (75)
312 PF07862 Nif11: Nitrogen fixat 21.4 1.2E+02 0.0026 14.7 4.9 21 100-120 28-48 (49)
313 PF08006 DUF1700: Protein of u 21.3 1.4E+02 0.0031 19.3 3.0 14 63-76 2-15 (181)
314 PF14771 DUF4476: Domain of un 21.0 1.8E+02 0.0038 16.5 8.2 13 99-111 40-52 (95)
315 KOG3442 Uncharacterized conser 21.0 2.2E+02 0.0047 17.6 3.5 38 25-63 53-96 (132)
316 TIGR02787 codY_Gpos GTP-sensin 21.0 2E+02 0.0044 20.1 3.7 30 5-35 177-206 (251)
317 COG3820 Uncharacterized protei 20.8 98 0.0021 20.4 2.1 50 59-108 18-69 (230)
318 COG4476 Uncharacterized protei 20.7 1.6E+02 0.0034 16.8 2.6 49 6-54 12-61 (90)
319 PF13551 HTH_29: Winged helix- 20.4 1.9E+02 0.004 16.5 6.2 49 5-53 58-108 (112)
320 PF10668 Phage_terminase: Phag 20.3 1.1E+02 0.0023 16.2 1.9 22 86-108 11-32 (60)
321 PRK08181 transposase; Validate 20.2 2.7E+02 0.0059 19.6 4.4 46 97-145 5-50 (269)
322 KOG0869 CCAAT-binding factor, 20.2 2.6E+02 0.0056 18.1 4.3 38 90-127 78-115 (168)
323 PF09061 Stirrup: Stirrup; In 20.1 64 0.0014 17.3 1.0 30 97-126 48-77 (79)
324 PF13075 DUF3939: Protein of u 20.1 24 0.00051 22.0 -0.7 46 27-74 9-54 (140)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=7.1e-31 Score=163.39 Aligned_cols=144 Identities=39% Similarity=0.735 Sum_probs=137.3
Q ss_pred CCCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCC
Q 032081 2 GKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEP 79 (147)
Q Consensus 2 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~ 79 (147)
..+++.+++++|+++|+.+|++++|.|+..+|..+++.+|.+++..++.+++. +. +.+.|+|.+|+.++........
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 46789999999999999999999999999999999999999999999999999 44 7899999999999999998888
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 80 FDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 80 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
..+.++++|+.||.+++|+|+..+++.+++.+|..++++++..++..++.+++|.|+|++|++.+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999999999999999997653
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=4.7e-28 Score=152.90 Aligned_cols=142 Identities=49% Similarity=0.823 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCCh--
Q 032081 5 LSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPF-- 80 (147)
Q Consensus 5 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~-- 80 (147)
++......++.+|..+|++++|+|+..++..+++.+|..++..++..++. +.+++|.|++.+|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 57788999999999999999999999999999999999999999999999 88899999999999999877665443
Q ss_pred --HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 81 --DRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 81 --~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
.+.++.+|+.+|.+|+|+|+..||+.+|..+|.+.+.+++..++..+|.|++|.|+|++|++.+..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 349999999999999999999999999999999999999999999999999999999999998864
No 3
>PTZ00184 calmodulin; Provisional
Probab=99.95 E-value=6.5e-26 Score=142.72 Aligned_cols=146 Identities=49% Similarity=0.899 Sum_probs=134.9
Q ss_pred CCCCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCC
Q 032081 1 MGKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPE 78 (147)
Q Consensus 1 ~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~ 78 (147)
|+..++++++..+...|..+|.+++|.|+..+|..++..++..++.+.+..++. +.+++|.|+|++|+..+.......
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC
Confidence 577899999999999999999999999999999999999998889999999999 888899999999999988765555
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 79 PFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 79 ~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
.....+..+|..+|.+++|.|+.++|..++..++..++.+.+..++..+|.+++|.|+|+||+.++..
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 55678999999999999999999999999999998899999999999999999999999999998865
No 4
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=6.6e-25 Score=139.50 Aligned_cols=144 Identities=37% Similarity=0.658 Sum_probs=132.4
Q ss_pred CCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCCh
Q 032081 3 KDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPF 80 (147)
Q Consensus 3 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~ 80 (147)
.+++++++.++..+|..+|.+++|.|+..+|..++..+|..++...+..++. +.+++|.|+|.+|+..+.........
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 4678999999999999999999999999999999999998889999999998 88899999999999988765544455
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 81 DRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 81 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
.+.+..+|..+|.+++|.|+..||..++..+|..++..++..++..++.+++|.|++++|.+++..
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999999999999999998864
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.4e-24 Score=132.83 Aligned_cols=144 Identities=31% Similarity=0.565 Sum_probs=136.2
Q ss_pred CCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCCh
Q 032081 3 KDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPF 80 (147)
Q Consensus 3 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~ 80 (147)
+.+++++.+.++..|..+|++++|+|+..+|+-+.+++|+.+..+++..++. +..+.|.|+|++|...+.......+.
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 3567888899999999999999999999999999999999999999999999 67778999999999998888888888
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 81 DRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 81 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
.+.++.+|+.+|.+++|.|+..+|+.+.+.+|.+++++++++|+..+|.+++|.|+-+||.++++.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999999999999999875
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=2.1e-22 Score=122.51 Aligned_cols=140 Identities=26% Similarity=0.529 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCChHHH
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMKPEPFDRQ 83 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 83 (147)
.+++.++++++++|..+|+|++|.|..++++..+.++|-.++.+++..++. ...|.|+|--|+..+...+...+..+.
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~--Ea~gPINft~FLTmfGekL~gtdpe~~ 102 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK--EAPGPINFTVFLTMFGEKLNGTDPEEV 102 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH--hCCCCeeHHHHHHHHHHHhcCCCHHHH
Confidence 468899999999999999999999999999999999999999999999996 557899999999999999888888899
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 84 LRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 84 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
+..+|..||.++.|.|..+.|+.+|...|..++++++..+++.+..+..|.++|..|+.+++
T Consensus 103 I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.89 E-value=8.9e-22 Score=117.92 Aligned_cols=141 Identities=35% Similarity=0.652 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHhhcCC----CCCcchHHHHHHHHhhcCCCC-
Q 032081 5 LSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL----TAPFDFPRFLDLMAKHMKPEP- 79 (147)
Q Consensus 5 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~i~~~ef~~~~~~~~~~~~- 79 (147)
.+++....++++|..||..++|.|+..+...+++.+|.+|+..++.+.+..+.. -.+++|++|+..+....+.+.
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 567778999999999999999999999999999999999999999999983333 389999999999887765543
Q ss_pred -hHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 80 -FDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 80 -~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
..+....-++.||++|+|.|...||+++|..+|..++++++..++.-.. |.+|.|+|+.|++.+.+
T Consensus 85 ~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 85 GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 4567888899999999999999999999999999999999999988866 88899999999987753
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.88 E-value=8.6e-21 Score=122.06 Aligned_cols=141 Identities=28% Similarity=0.471 Sum_probs=119.8
Q ss_pred CCCHHHHHHHHHhcchhccC-CCCccCHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCCCChH
Q 032081 4 DLSDDQVSSMKEAFTLFDTD-GDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAP-FDFPRFLDLMAKHMKPEPFD 81 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~ef~~~~~~~~~~~~~~ 81 (147)
.++..++.+|...|..++.+ ++|+|+.+||..+. .+..++..+.|...+. ..+++. |++++|+..+..+.......
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~-~~~~~~~v~F~~Fv~~ls~f~~~~~~~ 103 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFD-TDGNGDPVDFEEFVRLLSVFSPKASKR 103 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHh-ccCCCCccCHHHHHHHHhhhcCCccHH
Confidence 47889999999999999999 99999999999977 5667777777777775 333444 99999999999888777776
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhc-CCCCC--HHH----HHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSI-GEKLE--PSE----FDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~--~~~----~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
++++-+|++||.+++|+|+.+|+.+++..+ +...+ ++. ++..+..+|.+++|+|+++||.+++.+
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 799999999999999999999999999887 33344 433 345788899999999999999998865
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=1.2e-18 Score=112.24 Aligned_cols=128 Identities=26% Similarity=0.437 Sum_probs=116.5
Q ss_pred HHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh---hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHH
Q 032081 11 SSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS---EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDA 87 (147)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 87 (147)
..+...|+..|++.+|.|+.+|+..+|...+......+.++++- |.+..|.|++.||..++... ..++.+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~v 129 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRNV 129 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHHH
Confidence 46788999999999999999999999997776666666666655 88899999999999999966 799999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 88 FKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 88 f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
|+.+|.|+.|.|+..||+++|..+|..+++.-.+.+++.+|...+|.|.+++|++++.
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988799999999999874
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.81 E-value=4.1e-18 Score=109.82 Aligned_cols=140 Identities=19% Similarity=0.358 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCC-CCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCCh
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGG-NPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPF 80 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~ 80 (147)
++++.+++.|.+-|.. .-.+|.++..+|+.+++.+.. .-+..-...+|+ |.+++|.|++.||+..++...... .
T Consensus 22 ~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt-~ 98 (193)
T KOG0044|consen 22 KFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT-L 98 (193)
T ss_pred CCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc-H
Confidence 3455555555444444 224899999999999999764 444555666666 999999999999999998776554 4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhc----CC------CC-CHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 81 DRQLRDAFKVLDKDNTGFVSVSDLRHILTSI----GE------KL-EPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 81 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~----~~------~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
.+.++++|+++|.+|+|+|+..|+..+++.. +. .. ..+....+|..+|.|++|.||++||++.+.+
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 5899999999999999999999999998775 21 11 3345678999999999999999999987653
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.74 E-value=1.5e-16 Score=111.00 Aligned_cols=137 Identities=15% Similarity=0.356 Sum_probs=124.6
Q ss_pred CCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCC-CCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCC
Q 032081 3 KDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGN-PTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEP 79 (147)
Q Consensus 3 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~ 79 (147)
...+++...++...|..+|.+++|.++..++.+.+..+..+ +...-...++. +.+.+++|+|.+|...+...
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~----- 80 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK----- 80 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----
Confidence 34677888889999999999999999999999999998777 77777788888 89999999999999998744
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 80 FDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 80 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
+..+..+|...|.+++|.|...|+.+.|+.+|.+++++++..+++.+|+++++.|+++||...+.
T Consensus 81 -E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 81 -ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred -HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 25788999999999999999999999999999999999999999999999999999999988764
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.54 E-value=2.7e-13 Score=101.53 Aligned_cols=102 Identities=22% Similarity=0.400 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcC-CCCCHHH---HHHHHh--hcCCCCCcchHHHHHHHHhhcCC
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLG-GNPTQAQ---LKSIIS--EEKLTAPFDFPRFLDLMAKHMKP 77 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~ 77 (147)
.++..++++++++|..+|++++|.+ +..++..+| ..+++.+ +..++. |.+++|.|+++||+..+.... .
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg-~ 210 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG-N 210 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-c
Confidence 5678899999999999999999996 888888999 5888887 788888 888999999999999998643 3
Q ss_pred CChHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 032081 78 EPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTS 110 (147)
Q Consensus 78 ~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 110 (147)
....+.+..+|+.+|.+++|.|+.+||..++..
T Consensus 211 ~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 211 LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 445678999999999999999999999999988
No 13
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.53 E-value=5e-14 Score=80.64 Aligned_cols=64 Identities=20% Similarity=0.389 Sum_probs=59.8
Q ss_pred HHHHHHHhhhCC-CCCCcccHHHHHHHHHh-cCCCCCH-HHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 82 RQLRDAFKVLDK-DNTGFVSVSDLRHILTS-IGEKLEP-SEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 82 ~~~~~~f~~~D~-~~~g~I~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..+..+|+.||. +++|+|+..||+.++.. +|..++. ++++.++..+|.|++|.|+|+||+.++.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 468899999999 99999999999999999 8877887 8999999999999999999999999875
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.53 E-value=9.6e-14 Score=75.64 Aligned_cols=62 Identities=37% Similarity=0.770 Sum_probs=54.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHH----HHHHHHHhccCCCCceeHHHHHHHH
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSE----FDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
.++.+|+.+|.+++|+|+.+||..++..++...+... +..++..+|.|++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3678999999999999999999999999987665544 4556999999999999999999875
No 15
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.2e-13 Score=94.02 Aligned_cols=134 Identities=17% Similarity=0.271 Sum_probs=107.0
Q ss_pred HHHHHHHhcchhccCCCCccCHHHHHHHHHHcC-CCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCCh----H
Q 032081 9 QVSSMKEAFTLFDTDGDGKIAPSELGILMRSLG-GNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPF----D 81 (147)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~----~ 81 (147)
.+.+-++.|...|.|++|.+|.+||..+|+--. -.+..-.+...+. |.+++|.|+++||+.-+......... .
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 445567889999999999999999999988633 3344445555565 89999999999999887765542111 1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIA 142 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 142 (147)
..-.+++...|.|++|+++.+|++..+..-+......++..++...|.|++|++|++|.+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 2345788889999999999999998877767667788899999999999999999999875
No 16
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.51 E-value=4.7e-13 Score=94.70 Aligned_cols=134 Identities=21% Similarity=0.371 Sum_probs=107.1
Q ss_pred HHHHhcchhccCCCCccCHHHHHHHHHH-cCCCCCHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCC----CC-------
Q 032081 12 SMKEAFTLFDTDGDGKIAPSELGILMRS-LGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMKP----EP------- 79 (147)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~----~~------- 79 (147)
.|...|+.+|+.++|.|+......+... .|+++|.-.+.--+-..+.+|.|.|.+.+..+..-..- ..
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr 544 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYR 544 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHh
Confidence 4667899999999999999999998887 68888876665554455667889998877654421100 00
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC----CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 80 FDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG----EKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 80 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
....+..+|+.+|.|+.|.|+.+||+++++-++ ..++++++.++.+.+|.|+||.|++.||+++++
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 112577899999999999999999999998773 557889999999999999999999999999864
No 17
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.49 E-value=1.7e-12 Score=79.02 Aligned_cols=140 Identities=24% Similarity=0.403 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHhcchhccC-----------CCCccCHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCcchHHHHHHHHh
Q 032081 5 LSDDQVSSMKEAFTLFDTD-----------GDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 5 ~~~~~~~~l~~~f~~~d~~-----------~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 73 (147)
+|.+++-++...|+.+.++ ..-.++.+.+.+ ...+.-++...-+.++|. .++.|.+++++|++.++.
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~k-MPELkenpfk~ri~e~FS-eDG~GnlsfddFlDmfSV 99 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEK-MPELKENPFKRRICEVFS-EDGRGNLSFDDFLDMFSV 99 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhh-ChhhhcChHHHHHHHHhc-cCCCCcccHHHHHHHHHH
Confidence 4667777888788777654 122445555544 455777788888999996 556789999999999998
Q ss_pred hcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC-CCCCHHHH----HHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 74 HMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG-EKLEPSEF----DEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 74 ~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
+....+..-.+..+|+.+|-+++++|...++...+.++. ..+++++. ..+++..|.+++|++++.+|...+.+
T Consensus 100 ~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 100 FSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 877766666888999999999999999999999998874 34677665 45788899999999999999987764
No 18
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.47 E-value=5.9e-13 Score=86.16 Aligned_cols=91 Identities=21% Similarity=0.360 Sum_probs=78.3
Q ss_pred HHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHH
Q 032081 9 QVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRD 86 (147)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 86 (147)
-+..|+.+|..+|+|++|+|+..||..+|..+|+.++.+.+..+++ +....+.|.|++|+.+|..+ ..+..
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------~~lt~ 194 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------QRLTE 194 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------HHHHH
Confidence 3567788999999999999999999999999999999999999998 55558999999999999877 78899
Q ss_pred HHhhhCCCCCCccc--HHHHHH
Q 032081 87 AFKVLDKDNTGFVS--VSDLRH 106 (147)
Q Consensus 87 ~f~~~D~~~~g~I~--~~e~~~ 106 (147)
+|+..|.+..|.|+ .++|..
T Consensus 195 ~Fr~~D~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 195 AFRRRDTAQQGSITISYDDFLQ 216 (221)
T ss_pred HHHHhccccceeEEEeHHHHHH
Confidence 99999999888764 445543
No 19
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.45 E-value=8.2e-13 Score=75.68 Aligned_cols=64 Identities=20% Similarity=0.410 Sum_probs=59.3
Q ss_pred HHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-----cCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 82 RQLRDAFKVLD-KDNTG-FVSVSDLRHILTS-----IGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 82 ~~~~~~f~~~D-~~~~g-~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..+..+|..+| .+|+| .|+.+||+.+|+. +|...+++++..++..+|.|++|.|+|++|+.++.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 47889999998 79999 5999999999999 88888999999999999999999999999998875
No 20
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=5.7e-12 Score=85.99 Aligned_cols=138 Identities=17% Similarity=0.260 Sum_probs=105.8
Q ss_pred HHHHHHHHhcchhccCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHHh-hcCCCCCcchHHHHHHHHhhcCCCC------
Q 032081 8 DQVSSMKEAFTLFDTDGDGKIAPSELGILMRSL-GGNPTQAQLKSIIS-EEKLTAPFDFPRFLDLMAKHMKPEP------ 79 (147)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~i~~~ef~~~~~~~~~~~~------ 79 (147)
+...++..++..+|.+++|.|+..++...+... .-.+..+...++.. +.+++|.|+|++++..+......+.
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 345568889999999999999999999987653 33333444444444 8889999999999988764321110
Q ss_pred -h------HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 80 -F------DRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG-EKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 80 -~------~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
. ...-+.-|+..|.|++|.++.+||..+|..-- ..+.+.-+.+-+...|+|++|+|+++||+.-|-
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 0 11344679999999999999999999997754 346777888999999999999999999997654
No 21
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-11 Score=80.05 Aligned_cols=118 Identities=16% Similarity=0.249 Sum_probs=97.6
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHh---hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHH
Q 032081 27 KIAPSELGILMRSLGGNPTQAQLKSIIS---EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSD 103 (147)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e 103 (147)
.++.+.+..+.+. -..+..+++.+++ .....|.++.++|..++.......+.......+|+.+|.+++|.|+..|
T Consensus 8 ~~~~~~~e~l~~~--t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~E 85 (193)
T KOG0044|consen 8 KLQPESLEQLVQQ--TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLE 85 (193)
T ss_pred cCCcHHHHHHHHh--cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHH
Confidence 4444555554432 3467788888888 3445799999999999998887677778899999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 104 LRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
|..++..+......+-+...|..||.|++|.|+++|++.++..
T Consensus 86 fi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 86 FICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred HHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 9999988877677788889999999999999999999988753
No 22
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.37 E-value=1.8e-11 Score=77.35 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=84.2
Q ss_pred HHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCC-----CHHH
Q 032081 47 AQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKL-----EPSE 119 (147)
Q Consensus 47 ~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~-----~~~~ 119 (147)
.++..+|. |.+++|.|+-.++..++..+...+ ....+..++..+|.+|+|.|+.++|..++...+... +.++
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~-t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP-TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 45666666 888999999999999988665554 558999999999999999999999999998875432 3458
Q ss_pred HHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 120 FDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 120 ~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
+.+.|+.+|.+++|.|++.|+..+|.+
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 999999999999999999999998864
No 23
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.36 E-value=6.4e-12 Score=72.01 Aligned_cols=64 Identities=17% Similarity=0.427 Sum_probs=57.5
Q ss_pred HHHHHHHhhhCC-CC-CCcccHHHHHHHHHh---cCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 82 RQLRDAFKVLDK-DN-TGFVSVSDLRHILTS---IGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 82 ~~~~~~f~~~D~-~~-~g~I~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..+-.+|..+|. +| +|+|+.+||+.++.. +|..++.+++.++++.+|.|++|+|+|+||+.++.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 356678999998 67 899999999999963 68889999999999999999999999999998875
No 24
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.34 E-value=8.6e-12 Score=72.59 Aligned_cols=65 Identities=20% Similarity=0.479 Sum_probs=58.2
Q ss_pred HHHHHHHhhhCC-CC-CCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 82 RQLRDAFKVLDK-DN-TGFVSVSDLRHILTS-----IGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~~f~~~D~-~~-~g~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
..+..+|..+|. +| +|.|+..||+.++.. +|..++.+++..++..+|.+++|.|+|++|+.++.+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 468889999997 87 699999999999986 466789999999999999999999999999988753
No 25
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.33 E-value=9e-11 Score=73.67 Aligned_cols=102 Identities=13% Similarity=0.203 Sum_probs=84.9
Q ss_pred CCCHHHHH---HHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC-CCCC
Q 032081 43 NPTQAQLK---SIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG-EKLE 116 (147)
Q Consensus 43 ~~~~~~~~---~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~ 116 (147)
..+.+++. +.|. |.+++|.|++.++...+. ..........+..++..+|. |+|.|+..+|..+|.... ...+
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCc
Confidence 34444444 4444 899999999999999988 54555566899999999999 999999999999997764 5567
Q ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 117 PSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 117 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
.+++...|+.+|.|++|+|+..++..+++.
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 889999999999999999999999988763
No 26
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.33 E-value=1.3e-11 Score=71.59 Aligned_cols=65 Identities=20% Similarity=0.489 Sum_probs=57.5
Q ss_pred HHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-cC----CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 82 RQLRDAFKVLD-KDNTG-FVSVSDLRHILTS-IG----EKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~~f~~~D-~~~~g-~I~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
+.++.+|..+| .+|+| .|+..||+.+|+. +| ..++.+++..++..+|.+++|.|+|++|+.++.+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 57889999997 99999 5999999999986 44 3468889999999999999999999999998764
No 27
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.32 E-value=1.2e-11 Score=64.55 Aligned_cols=52 Identities=33% Similarity=0.607 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 95 NTGFVSVSDLRHILTSIGEK-LEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 95 ~~g~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
.+|.|+.++|+.+|..+|.. ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36999999999999888999 99999999999999999999999999999864
No 28
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.32 E-value=1.6e-11 Score=71.23 Aligned_cols=65 Identities=18% Similarity=0.424 Sum_probs=55.6
Q ss_pred HHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-c----CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 82 RQLRDAFKVLD-KDNTG-FVSVSDLRHILTS-I----GEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~~f~~~D-~~~~g-~I~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
..+..+|..|| .+|+| .|+..||+.++.. + +...++.++..++..+|.|++|.|+|+||+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 36778899999 78998 5999999999976 2 33347789999999999999999999999998753
No 29
>PTZ00183 centrin; Provisional
Probab=99.31 E-value=9.5e-11 Score=74.27 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=80.0
Q ss_pred HHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHH
Q 032081 48 QLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSI-GEKLEPSEFDEWI 124 (147)
Q Consensus 48 ~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~ 124 (147)
.+..+|. |.+++|.|++.+|..++..... ......+..+|..+|.+++|.|+.++|..++... ........+..+|
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3445555 8889999999999999875533 2344689999999999999999999999988664 3445667889999
Q ss_pred HHhccCCCCceeHHHHHHHHh
Q 032081 125 REVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 125 ~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..+|.+++|.|++.||..++.
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHH
Confidence 999999999999999998875
No 30
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.30 E-value=9.3e-11 Score=93.00 Aligned_cols=135 Identities=16% Similarity=0.364 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCC-------HHHHHHHHh--hcCCCCCcchHHHHHHHHh
Q 032081 3 KDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPT-------QAQLKSIIS--EEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 3 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~--~~~~~~~i~~~ef~~~~~~ 73 (147)
+.+|++.+..+..+|.+||++++|.++..+|+.+|+++|+..| .+.+..++. ||+.+|+|+..+|+.++..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 4579999999999999999999999999999999999987663 347788887 9999999999999999876
Q ss_pred hcCC-CChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccC--------CCCceeHHHHHHHH
Q 032081 74 HMKP-EPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVG--------SDGKIKYEDFIARM 144 (147)
Q Consensus 74 ~~~~-~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~l 144 (147)
.... ......+..+|+.+|. |..+|+.+++.+. ++++++.-++..+.+- -.+.++|.+|.+.+
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 5433 2344689999999998 9999999998655 4666666665554332 23469999999876
Q ss_pred h
Q 032081 145 V 145 (147)
Q Consensus 145 ~ 145 (147)
-
T Consensus 2397 ~ 2397 (2399)
T KOG0040|consen 2397 F 2397 (2399)
T ss_pred h
Confidence 3
No 31
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.28 E-value=3e-11 Score=65.77 Aligned_cols=59 Identities=31% Similarity=0.455 Sum_probs=54.2
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 85 RDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 85 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
+.+|..+|++++|.|+.+|+..++...| .+.+++..++..++.+++|.|++++|+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 4689999999999999999999999887 4888899999999999999999999998764
No 32
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.28 E-value=4.6e-11 Score=68.47 Aligned_cols=68 Identities=21% Similarity=0.397 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcchhc-cCCCC-ccCHHHHHHHHHH-----cCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 7 DDQVSSMKEAFTLFD-TDGDG-KIAPSELGILMRS-----LGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 7 ~~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
+..+..+.++|+.|| ++++| .|+..+|+.++.. +|..++++++.+++. |.+++|.|+|++|+.++...
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 356778999999998 79999 6999999999998 888899999999999 89999999999999887643
No 33
>PTZ00184 calmodulin; Provisional
Probab=99.27 E-value=2.6e-10 Score=71.47 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=78.5
Q ss_pred HHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHH
Q 032081 49 LKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG-EKLEPSEFDEWIR 125 (147)
Q Consensus 49 ~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~~ 125 (147)
+...|. |.+++|.|++.+|..++...... ...+.+..+|..+|.+++|.|+.++|..++.... .......+..+|.
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~ 91 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFK 91 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 334444 88899999999999988654333 3357899999999999999999999999987653 3345567889999
Q ss_pred HhccCCCCceeHHHHHHHHh
Q 032081 126 EVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 126 ~~d~~~~g~i~~~ef~~~l~ 145 (147)
.+|.+++|.|+.++|..++.
T Consensus 92 ~~D~~~~g~i~~~e~~~~l~ 111 (149)
T PTZ00184 92 VFDRDGNGFISAAELRHVMT 111 (149)
T ss_pred hhCCCCCCeEeHHHHHHHHH
Confidence 99999999999999988774
No 34
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.27 E-value=3.1e-11 Score=69.13 Aligned_cols=68 Identities=15% Similarity=0.293 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcchhcc-CCCCccCHHHHHHHHHH-cCCCCCH-HHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 7 DDQVSSMKEAFTLFDT-DGDGKIAPSELGILMRS-LGGNPTQ-AQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 7 ~~~~~~l~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
+..+..+..+|+.||+ +++|+|+..+|+.++.. +|-.++. +++..++. |.+++|.|+|+||...+...
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3567789999999999 99999999999999999 8866777 89999998 89999999999999887644
No 35
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.26 E-value=2e-11 Score=66.40 Aligned_cols=59 Identities=31% Similarity=0.561 Sum_probs=43.4
Q ss_pred HHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHH----Hh--hcCCCCCcchHHHHHH
Q 032081 12 SMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSI----IS--EEKLTAPFDFPRFLDL 70 (147)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~----~~--~~~~~~~i~~~ef~~~ 70 (147)
+++++|..+|.+++|+|+.+||..++..++...+...+... +. |.+++|.|+++||+.+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 47889999999999999999999999998866654333333 44 5556666666666544
No 36
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.25 E-value=4.1e-11 Score=68.90 Aligned_cols=65 Identities=20% Similarity=0.490 Sum_probs=57.3
Q ss_pred HHHHHHHhhhCC--CCCCcccHHHHHHHHHh-cCCC----CCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 82 RQLRDAFKVLDK--DNTGFVSVSDLRHILTS-IGEK----LEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~~f~~~D~--~~~g~I~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
..++.+|..+|. +++|.|+.++|..++.. +|.. ++..++..++..+|.+++|.|+|++|+.++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 568889999999 89999999999999976 4543 35889999999999999999999999998764
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.25 E-value=6.9e-11 Score=69.05 Aligned_cols=63 Identities=24% Similarity=0.419 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 81 DRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 81 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
...+..+|..+|.+++|.|+.++++.++...+ ++.+++..++..+|.+.+|.|++++|+.++.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 35788999999999999999999999999876 6888999999999999999999999998775
No 38
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.23 E-value=1.2e-10 Score=68.01 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
.+|++++..+..+|..+|.+++|.|+..++..++...+ ++.+++..++. +.+++|.|++++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999866 67888999998 78889999999999887644
No 39
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.22 E-value=1.5e-10 Score=61.57 Aligned_cols=61 Identities=49% Similarity=0.841 Sum_probs=57.3
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 84 LRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 84 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
+..+|..+|.+++|.|+.+++..++..++...+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999988999999999999999999999999999876
No 40
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.18 E-value=2.3e-10 Score=65.71 Aligned_cols=64 Identities=19% Similarity=0.452 Sum_probs=55.1
Q ss_pred HHHHHHHhh-hCCCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 82 RQLRDAFKV-LDKDNTG-FVSVSDLRHILTSI-----GEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 82 ~~~~~~f~~-~D~~~~g-~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..+..+|.. .|.+|+| .|+.+||+.++... +....+.++..++..+|.|++|.|+|+||+.++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 467788988 7788876 99999999999886 3345678999999999999999999999998875
No 41
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.18 E-value=2e-10 Score=68.94 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=53.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..+.++|..+|.|++|.|+.+|+..+. .......+..++..+|.|++|.||++||..++.
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 678999999999999999999999876 224567788999999999999999999999884
No 42
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.14 E-value=5.2e-10 Score=64.08 Aligned_cols=68 Identities=13% Similarity=0.411 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcchhcc-CC-CCccCHHHHHHHHHH---cCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 7 DDQVSSMKEAFTLFDT-DG-DGKIAPSELGILMRS---LGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 7 ~~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
++.+..+..+|+.|+. ++ +|+|+..||+.++.. +|.+++.+++.+++. |.+++|.|+|++|+.++...
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4567778899999997 66 899999999999963 688899999999998 88999999999999887643
No 43
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.13 E-value=5.7e-10 Score=64.64 Aligned_cols=68 Identities=22% Similarity=0.418 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcchhc-cCCCC-ccCHHHHHHHHHH-cC----CCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 7 DDQVSSMKEAFTLFD-TDGDG-KIAPSELGILMRS-LG----GNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 7 ~~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
+..+..+.++|..+| ++++| .|+..+|+.++.. +| ..++.+++..++. +.+++|.|+|++|+.++...
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 345678999999997 99999 5999999999975 43 4578899999998 88889999999999887644
No 44
>PF14658 EF-hand_9: EF-hand domain
Probab=99.13 E-value=4.2e-10 Score=59.99 Aligned_cols=61 Identities=34% Similarity=0.541 Sum_probs=57.3
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCC-CceeHHHHHHHHhc
Q 032081 86 DAFKVLDKDNTGFVSVSDLRHILTSIGE-KLEPSEFDEWIREVDVGSD-GKIKYEDFIARMVA 146 (147)
Q Consensus 86 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~ 146 (147)
.+|..||.++.|.|...++..+|+.++. .+++++++.+.+.+|.++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999987 8999999999999999988 99999999999874
No 45
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.11 E-value=8.9e-10 Score=63.88 Aligned_cols=68 Identities=21% Similarity=0.411 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcchhc-cCCCC-ccCHHHHHHHHHH-c----CCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 7 DDQVSSMKEAFTLFD-TDGDG-KIAPSELGILMRS-L----GGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 7 ~~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
+..+..+.++|+.|| +|++| +|+..||+.++.. + +...+..++.+++. |.+++|.|+|+||+.++..+
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 356677888999999 78998 5999999999976 3 34557788999999 88899999999999988755
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=99.09 E-value=2.3e-09 Score=80.87 Aligned_cols=117 Identities=11% Similarity=0.163 Sum_probs=84.9
Q ss_pred CccCHHHHHHHHHHcCCCCCH---HHHHHHHh--hcCCCCCcchHHHHHHHHhhc-CCCChHH--HHHHHHhhhCCCCCC
Q 032081 26 GKIAPSELGILMRSLGGNPTQ---AQLKSIIS--EEKLTAPFDFPRFLDLMAKHM-KPEPFDR--QLRDAFKVLDKDNTG 97 (147)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~---~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~-~~~~~~~--~~~~~f~~~D~~~~g 97 (147)
..++.+++......--..... +++.+.|. |++++|.+ +-.++..+- ..+...+ .+..+|..+|.+++|
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG 194 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDG 194 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 345666665543320012222 45555566 88888886 333333332 2333333 389999999999999
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 98 FVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 98 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
.|+.+||..++..++...+.+++..+|..+|.|++|.|+++||.+++..
T Consensus 195 ~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 195 QLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred eEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999999887788999999999999999999999999998864
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.09 E-value=8.6e-10 Score=64.13 Aligned_cols=66 Identities=21% Similarity=0.401 Sum_probs=56.8
Q ss_pred HHHHHHHHhcchhcc-CC-CCccCHHHHHHHHHH-----cCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHh
Q 032081 8 DQVSSMKEAFTLFDT-DG-DGKIAPSELGILMRS-----LGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 8 ~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~ 73 (147)
.....++.+|..+|. ++ +|.|+..++..++.. +|..++.+++..++. +.+++|.|+|++|+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 346678999999997 87 799999999999886 567889999999998 8888999999999987763
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.09 E-value=8e-10 Score=63.48 Aligned_cols=68 Identities=18% Similarity=0.356 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcchhcc--CCCCccCHHHHHHHHHH-cCCC----CCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 7 DDQVSSMKEAFTLFDT--DGDGKIAPSELGILMRS-LGGN----PTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 7 ~~~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
++++..+..+|..+|+ +++|.|+..+|..++.. +|.. ++.+++..++. +.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4677889999999999 89999999999999976 4533 45889999998 78889999999999988744
No 49
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.01 E-value=2e-09 Score=61.79 Aligned_cols=65 Identities=12% Similarity=0.400 Sum_probs=55.1
Q ss_pred HHHHHHHhhhCCC--CCCcccHHHHHHHHH-hcCCCCC----HHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 82 RQLRDAFKVLDKD--NTGFVSVSDLRHILT-SIGEKLE----PSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~~f~~~D~~--~~g~I~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
..+...|..++.. ++|.|+.+||+.++. .+|..++ +.++..++..+|.+++|.|+|++|+.++.+
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3566778888865 479999999999996 5565566 899999999999999999999999998753
No 50
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.00 E-value=8.9e-09 Score=73.69 Aligned_cols=125 Identities=24% Similarity=0.319 Sum_probs=97.9
Q ss_pred HHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh------hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHH
Q 032081 14 KEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS------EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDA 87 (147)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 87 (147)
.-.|-.+|.|.+|.|+.+++...-. ...+.-.+.++|. -...+|+++|++|+.++... ..+.....+..-
T Consensus 281 y~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~-e~k~t~~SleYw 356 (493)
T KOG2562|consen 281 YCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-EDKDTPASLEYW 356 (493)
T ss_pred HHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh-ccCCCccchhhh
Confidence 3347788999999999999977433 2345778888887 23467899999999998855 444555799999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHhc-------C-CCC-CHHHHHHHHHHhccCCCCceeHHHHHH
Q 032081 88 FKVLDKDNTGFVSVSDLRHILTSI-------G-EKL-EPSEFDEWIREVDVGSDGKIKYEDFIA 142 (147)
Q Consensus 88 f~~~D~~~~g~I~~~e~~~~l~~~-------~-~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~ 142 (147)
|+.+|.+|+|.|+..|++.+.... + ..+ -+..+.++++.+.....++|++++|..
T Consensus 357 FrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 357 FRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 999999999999999988776543 2 222 245678899999988899999999986
No 51
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.99 E-value=6.3e-09 Score=67.43 Aligned_cols=98 Identities=14% Similarity=0.243 Sum_probs=81.7
Q ss_pred HHhcchhccCCCCc-cCHHHHHHHHHHcCCCCCHH-HHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCCh------HHH
Q 032081 14 KEAFTLFDTDGDGK-IAPSELGILMRSLGGNPTQA-QLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPF------DRQ 83 (147)
Q Consensus 14 ~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~------~~~ 83 (147)
.+++..++.+++|. |++++|...+..+..+.+.. .+.-+|+ |.+++|.|+.+++...+......... ...
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 45678899888888 99999999999877666655 7777777 99999999999999999887764332 235
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhc
Q 032081 84 LRDAFKVLDKDNTGFVSVSDLRHILTSI 111 (147)
Q Consensus 84 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 111 (147)
+...|..+|.+++|.|+.+||..++.+.
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 6778999999999999999999998764
No 52
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.98 E-value=3.7e-09 Score=57.38 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=51.5
Q ss_pred HHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 14 KEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
+++|..+|++++|.|+..++..++...|. +.+++..++. +.+++|.|+|++|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 46899999999999999999999998875 7888899888 78889999999999887643
No 53
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.97 E-value=5.4e-09 Score=74.28 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=93.5
Q ss_pred HHHhcchhccCCCCccCHHHHHHHHHHcC-CCCCH--HHHHHHHh-hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHH
Q 032081 13 MKEAFTLFDTDGDGKIAPSELGILMRSLG-GNPTQ--AQLKSIIS-EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAF 88 (147)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~--~~~~~~~~-~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f 88 (147)
+.--|..+|+..+|.|+..+|...+-... .+... ..+.++-. -......|+++||..++.-...- ..+..|.
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~~l----~dfd~Al 395 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFRFLNNL----NDFDIAL 395 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHhhh----hHHHHHH
Confidence 34568999999999999999988776543 22221 12333333 22226789999999998755432 2333333
Q ss_pred hhhCCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 89 KVLDKDNTGFVSVSDLRHILTSI-GEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 89 ~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
..+- .-.+.|+..+|+++...+ |.++++..++-+|..+|.|+||.++++||+..|++
T Consensus 396 ~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 396 RFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 3332 345789999999998765 78899888999999999999999999999998864
No 54
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.95 E-value=5.2e-09 Score=55.48 Aligned_cols=59 Identities=39% Similarity=0.746 Sum_probs=52.4
Q ss_pred HHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHH
Q 032081 13 MKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLM 71 (147)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~ 71 (147)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++. +.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999999999999999999998888 77788999999998764
No 55
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=3.3e-08 Score=61.41 Aligned_cols=98 Identities=18% Similarity=0.296 Sum_probs=83.4
Q ss_pred HHHHhcchhccCCCCccCHHHHHHHHHH-cCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHH
Q 032081 12 SMKEAFTLFDTDGDGKIAPSELGILMRS-LGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAF 88 (147)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f 88 (147)
++.++..-+|++++|.|++++|...... ++..-+.+++...|+ |.+++|.|++.+|..+...+- +.-..+.+....
T Consensus 70 ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg-enltD~El~eMI 148 (172)
T KOG0028|consen 70 EILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELG-ENLTDEELMEMI 148 (172)
T ss_pred HHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhC-ccccHHHHHHHH
Confidence 4455667888999999999999887554 777779999999999 889999999999888877554 444557899999
Q ss_pred hhhCCCCCCcccHHHHHHHHHh
Q 032081 89 KVLDKDNTGFVSVSDLRHILTS 110 (147)
Q Consensus 89 ~~~D~~~~g~I~~~e~~~~l~~ 110 (147)
+-.|.+++|.|+.+||..+++.
T Consensus 149 eEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 149 EEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHhcccccccccHHHHHHHHhc
Confidence 9999999999999999998865
No 56
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.93 E-value=6.2e-09 Score=54.18 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=39.6
Q ss_pred CCCccCHHHHHHHHHHcCCC-CCHHHHHHHHh--hcCCCCCcchHHHHHHHH
Q 032081 24 GDGKIAPSELGILMRSLGGN-PTQAQLKSIIS--EEKLTAPFDFPRFLDLMA 72 (147)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~ 72 (147)
++|.|+.++|..++..+|.. ++.+++..++. |.+++|.|+|+||+..+.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 36888888888888777888 88888888888 888888888888887765
No 57
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.90 E-value=1.9e-08 Score=57.73 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcch-hccCCCC-ccCHHHHHHHHHHc-----CCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 7 DDQVSSMKEAFTL-FDTDGDG-KIAPSELGILMRSL-----GGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 7 ~~~~~~l~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
+..+..|..+|+. +|++++| +|+..||+.++..- +......++..++. |.+++|.|+|+||+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567888999999 6787876 99999999999874 33556788999998 88899999999999887643
No 58
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.84 E-value=9.1e-08 Score=69.32 Aligned_cols=133 Identities=13% Similarity=0.245 Sum_probs=95.1
Q ss_pred CHHHHHHHHHhcchhccCCCCccCHHHHHHHH-HHcCCCCCHHHHHHHHh---hcCCCCCcchHHHHHHHHhhcCCCChH
Q 032081 6 SDDQVSSMKEAFTLFDTDGDGKIAPSELGILM-RSLGGNPTQAQLKSIIS---EEKLTAPFDFPRFLDLMAKHMKPEPFD 81 (147)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~~~~~~~~~~~~~~~~~---~~~~~~~i~~~ef~~~~~~~~~~~~~~ 81 (147)
.++++..+.--|...+.++..+++.++|.... .-++.+...+.+.+++. |..++|-|+|+||..+-..++.+ +
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p---D 107 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP---D 107 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc---h
Confidence 34455555555566678888899999996654 44677777777777777 88899999999999886655543 3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCC------CCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGE------KLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
.....+|..||+.++|.++.+++.++...... +...+-+.. .+..+....++|.+|.+++
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~l 173 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFL 173 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHH
Confidence 57788999999999999999999999988632 223333333 3333444556777766654
No 59
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.80 E-value=1.5e-07 Score=67.12 Aligned_cols=126 Identities=20% Similarity=0.337 Sum_probs=90.6
Q ss_pred HHHhcchhccCCCCccCHHHHHHHHHH------cCC---------CCCHHHHHHHHh----hcCCCCCcchHHHHHHHHh
Q 032081 13 MKEAFTLFDTDGDGKIAPSELGILMRS------LGG---------NPTQAQLKSIIS----EEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~------~~~---------~~~~~~~~~~~~----~~~~~~~i~~~ef~~~~~~ 73 (147)
+.-+|..||.|++|.|+.+||..+..- +|. ..-...+...+. ..++++.+++++|+.+...
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 344689999999999999999876531 221 011112222222 7888999999999999987
Q ss_pred hcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC-CCCCH--HHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 74 HMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG-EKLEP--SEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 74 ~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~--~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
+. .+.++--|..+|+..+|.|+..+|..++-.+. .+... ..+..+-..++.. +-.|+++||..+.
T Consensus 315 Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff 382 (489)
T KOG2643|consen 315 LQ-----EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFF 382 (489)
T ss_pred HH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHH
Confidence 73 47888899999999999999999999987764 22222 2355666666654 5579999988754
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.79 E-value=4.1e-08 Score=56.32 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcchhccC--CCCccCHHHHHHHHH-HcCCCCC----HHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 7 DDQVSSMKEAFTLFDTD--GDGKIAPSELGILMR-SLGGNPT----QAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 7 ~~~~~~l~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
+..+..+..+|+.++.. ++|.|+..+|+.++. .++..++ .+++..++. |.+++|.|+|++|+..+...
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45677888999999865 489999999999997 4665555 889999999 88889999999999887644
No 61
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.79 E-value=3.7e-08 Score=59.15 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=27.0
Q ss_pred HHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHH
Q 032081 9 QVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLM 71 (147)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~ 71 (147)
....+.-.|..+|.|++|.|+..|+..+. +.+.+..+..++. |.+++|.||++||..++
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 33444555555555555555555555432 2233333333333 44444444444444443
No 62
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.73 E-value=8.4e-08 Score=59.27 Aligned_cols=59 Identities=29% Similarity=0.682 Sum_probs=47.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
+.++.+|..+|+|++|.|.+++|+..+.++|...++++++.|+... .|.|+|.-|+.++
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmf 90 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMF 90 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHH
Confidence 6889999999999999999999999999998888888888877653 3556666666544
No 63
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.73 E-value=1.4e-07 Score=60.83 Aligned_cols=105 Identities=25% Similarity=0.371 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCC-CCh
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKP-EPF 80 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~-~~~ 80 (147)
+++..+++....+|..+|.+.||+|+..|++..+.++|.+.+.--+..++. |.+.+|.++|.+|+-++...... ...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ 171 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQE 171 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccccc
Confidence 578899999999999999999999999999999999999988888888888 88889999999999887764432 222
Q ss_pred HHHHHHHHhh--hCCCCCCcccHHHHHHHH
Q 032081 81 DRQLRDAFKV--LDKDNTGFVSVSDLRHIL 108 (147)
Q Consensus 81 ~~~~~~~f~~--~D~~~~g~I~~~e~~~~l 108 (147)
+..+..+=+. .|+...|.-+...|-.+=
T Consensus 172 ds~~~~LAr~~eVDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 172 DSGLLRLARLSEVDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred chHHHHHHHhcccchhhhhhhhHHHHHHHH
Confidence 3344444444 788899998888876663
No 64
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.72 E-value=1e-07 Score=63.45 Aligned_cols=135 Identities=13% Similarity=0.182 Sum_probs=85.5
Q ss_pred HHHHHHhcchhccCCCCccCHHHHHHHHHHc---CCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCC-------
Q 032081 10 VSSMKEAFTLFDTDGDGKIAPSELGILMRSL---GGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKP------- 77 (147)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~------- 77 (147)
.+.+..+|.+.|.|.+|.|+..+++..+..- .+.-..++-...|+ |++++|+|+|++|..-+......
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevad 179 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVAD 179 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHH
Confidence 3457778888888888888888887766532 12233334444455 78888888888887655432211
Q ss_pred ----------------------------------------------------CChHHHHHHHHhhhCCCCCCcccHHHHH
Q 032081 78 ----------------------------------------------------EPFDRQLRDAFKVLDKDNTGFVSVSDLR 105 (147)
Q Consensus 78 ----------------------------------------------------~~~~~~~~~~f~~~D~~~~g~I~~~e~~ 105 (147)
......++.+-+.+|++|+..++..+|.
T Consensus 180 airlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFi 259 (362)
T KOG4251|consen 180 AIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFI 259 (362)
T ss_pred HhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhh
Confidence 0011235567777888888888888887
Q ss_pred HHHHhc-----CCCCC----HHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 106 HILTSI-----GEKLE----PSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 106 ~~l~~~-----~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
...-.. |..+. .....++-..+|.|++|.+|.+|+..++
T Consensus 260 slpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 260 SLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred cCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 653222 22222 3445667777888888888888876654
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.71 E-value=1.2e-07 Score=61.15 Aligned_cols=64 Identities=25% Similarity=0.552 Sum_probs=59.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..+...|..+|.+.+|+|+..|++..|.++|.+.|---+..|+...|.|.+|+|++-||+-+++
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 5788899999999999999999999999999888888889999999999999999999987765
No 66
>PF14658 EF-hand_9: EF-hand domain
Probab=98.70 E-value=1e-07 Score=50.91 Aligned_cols=59 Identities=29% Similarity=0.594 Sum_probs=53.4
Q ss_pred HhcchhccCCCCccCHHHHHHHHHHcCC-CCCHHHHHHHHh--hcCCC-CCcchHHHHHHHHh
Q 032081 15 EAFTLFDTDGDGKIAPSELGILMRSLGG-NPTQAQLKSIIS--EEKLT-APFDFPRFLDLMAK 73 (147)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~--~~~~~-~~i~~~ef~~~~~~ 73 (147)
.+|..||.++.|.|...++..+|+..+. .+.+.+++.+.. |+++. +.|+++.|+..+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999987 888999999998 88877 99999999988764
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.68 E-value=4e-08 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.680 Sum_probs=12.8
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHH
Q 032081 85 RDAFKVLDKDNTGFVSVSDLRHILT 109 (147)
Q Consensus 85 ~~~f~~~D~~~~g~I~~~e~~~~l~ 109 (147)
+.+|+.+|+|++|.|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 4455555555555555555555444
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.68 E-value=4e-08 Score=44.21 Aligned_cols=28 Identities=43% Similarity=0.653 Sum_probs=25.7
Q ss_pred HHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 119 EFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 119 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
+++.+|+.+|+|++|+|+++||..++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4788999999999999999999999874
No 69
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.65 E-value=1.3e-07 Score=57.43 Aligned_cols=68 Identities=16% Similarity=0.328 Sum_probs=58.4
Q ss_pred CChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCC--CCceeHHHHHHHHh
Q 032081 78 EPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGS--DGKIKYEDFIARMV 145 (147)
Q Consensus 78 ~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~l~ 145 (147)
++....++.+|..||..|+|.|+..+.-.+|+.+|.++|.+++...+..+.++. --++++++|+-++.
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQ 76 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHH
Confidence 344478999999999999999999999999999999999999999988888773 34788888877654
No 70
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.63 E-value=8.4e-07 Score=63.06 Aligned_cols=96 Identities=18% Similarity=0.324 Sum_probs=80.9
Q ss_pred HHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHH
Q 032081 46 QAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEW 123 (147)
Q Consensus 46 ~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~ 123 (147)
+..+..+|. |.+++|.|++.+....+..+..+....+..+.+|...|.+.+|.++.+||++.+.. .+.++..+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHH
Confidence 345666777 88899999999999888777666566788999999999999999999999999865 44567889
Q ss_pred HHHhccCCCCceeHHHHHHHHhc
Q 032081 124 IREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 124 ~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
|..+|.++||.|+..|.-++|+.
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHH
Confidence 99999999999999998877653
No 71
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.55 E-value=1.4e-07 Score=43.18 Aligned_cols=30 Identities=53% Similarity=0.995 Sum_probs=24.5
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHH-hcC
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILT-SIG 112 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~-~~~ 112 (147)
+++.+|+.+|.+++|+|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999988 554
No 72
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.48 E-value=2e-06 Score=50.65 Aligned_cols=62 Identities=24% Similarity=0.427 Sum_probs=54.1
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 80 FDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 80 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
.......+|..+|. ++|.|+.++.+.++...+ ++.+.+..++...|.+++|+++.+||+-+|
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 34577889999984 689999999999999888 688999999999999999999999999765
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.47 E-value=1.7e-07 Score=42.90 Aligned_cols=30 Identities=53% Similarity=0.903 Sum_probs=26.1
Q ss_pred HHHHhcchhccCCCCccCHHHHHHHHH-HcC
Q 032081 12 SMKEAFTLFDTDGDGKIAPSELGILMR-SLG 41 (147)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 41 (147)
+++.+|..+|++++|+|+..||..++. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 74
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.46 E-value=2.9e-06 Score=62.96 Aligned_cols=135 Identities=20% Similarity=0.340 Sum_probs=98.2
Q ss_pred CCCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHH-HHcCCCCCHHHHHHHHh-------hcCCCCCcchHHHHHHHHh
Q 032081 2 GKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILM-RSLGGNPTQAQLKSIIS-------EEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 2 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~ef~~~~~~ 73 (147)
.+++++.-+++|.++|...|.|++|.++-.|+..+= .+|+.+....++..+.. +.-....++...|+-+...
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 567888999999999999999999999999998763 34888887776666665 2223456777777765443
Q ss_pred hcCC-----------------------------------------CChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC
Q 032081 74 HMKP-----------------------------------------EPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG 112 (147)
Q Consensus 74 ~~~~-----------------------------------------~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~ 112 (147)
+... +...+.+..+|..+|.+++|.++-.|+..+...++
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 3211 01135688899999999999999999999998886
Q ss_pred CCC----CHHHHHHHHHHhccCCCCceeHHHHHH
Q 032081 113 EKL----EPSEFDEWIREVDVGSDGKIKYEDFIA 142 (147)
Q Consensus 113 ~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~ 142 (147)
... ...+ ....+..|.++|+.|+.
T Consensus 346 ~~pW~~~~~~~------~t~~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 346 GSPWTSSPYKD------STVKNERGWLTLNGFLS 373 (625)
T ss_pred CCCCCCCcccc------cceecccceeehhhHHH
Confidence 433 1111 12224678899998876
No 75
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.45 E-value=1.6e-06 Score=62.47 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=46.8
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 80 FDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 80 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
....++.+|..+|.+|+|.|+.+||.. ...+|..+|.|++|.|+++||...+.
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 345788999999999999999999842 47899999999999999999999875
No 76
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.45 E-value=2.9e-06 Score=48.51 Aligned_cols=62 Identities=16% Similarity=0.444 Sum_probs=49.6
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhc-----CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSI-----GEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
.+-.+|..+. .+.+.++..||+.++.+- +..-.+..++.++...|.|+||.|++.||+.++.
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4556777776 445799999999999652 2334578899999999999999999999998764
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.42 E-value=2.2e-06 Score=62.35 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=91.9
Q ss_pred HHhcchhccCCCCccCHHHHHHHHHHcC------CCCCHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCCChHHHHHHH
Q 032081 14 KEAFTLFDTDGDGKIAPSELGILMRSLG------GNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDA 87 (147)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 87 (147)
..+|+.||+.++|.++.+++..++.+.. ++.+.+.+...|. ......++|.+|.++++.+.. +...++
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg-~~~~r~~ny~~f~Q~lh~~~~-----E~~~qa 184 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG-DIRKRHLNYAEFTQFLHEFQL-----EHAEQA 184 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh-hHHHHhccHHHHHHHHHHHHH-----HHHHHH
Confidence 4578999999999999999999988643 4456677877774 334568999999999987743 568899
Q ss_pred HhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc-cCCCCceeHHHHH
Q 032081 88 FKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD-VGSDGKIKYEDFI 141 (147)
Q Consensus 88 f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~~~g~i~~~ef~ 141 (147)
|+..|+.++|+|+.=+|+.++-..-..+.+..+.+.+-... .+...++++..|.
T Consensus 185 fr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 185 FREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 99999999999999999999877655555555555444443 3444467666554
No 78
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.35 E-value=7.7e-06 Score=46.77 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcchhccCCCCccCHHHHHHHHHH-c----CCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 7 DDQVSSMKEAFTLFDTDGDGKIAPSELGILMRS-L----GGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 7 ~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
+..+..+..+|+.|.. +.+.++..||+.++.. + ...-....+.+++. |.+++|.|+|.||+.++..+
T Consensus 4 E~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 4 EHSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3456778889999984 4679999999998864 3 34446778888888 89999999999999987654
No 79
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.35 E-value=1.7e-05 Score=60.43 Aligned_cols=137 Identities=14% Similarity=0.228 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHH
Q 032081 5 LSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDR 82 (147)
Q Consensus 5 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~ 82 (147)
...+...-+..+|+..|++++|.+++.+...++..++..+...-+..++. +....+.+...+|..+.......+
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---- 205 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---- 205 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc----
Confidence 34455666788999999999999999999999999998888888888888 677789999999999987665543
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCCCHHHHHHHHHHhccC----CCCceeHHHHHHHHhc
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSIG--EKLEPSEFDEWIREVDVG----SDGKIKYEDFIARMVA 146 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 146 (147)
.+..+|..+- ++.+.++..++..++...+ ...+.+.+.++++.+... +.+.++++.|.++|.+
T Consensus 206 ev~~~f~~~s-~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 206 EVYFLFVQYS-HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred hHHHHHHHHh-CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 5666776664 4489999999999998874 457778888888887553 4456999999999864
No 80
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.28 E-value=4.5e-07 Score=54.32 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=47.0
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHH
Q 032081 80 FDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIAR 143 (147)
Q Consensus 80 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 143 (147)
....+...|..+|.|++|.|+..|+..+...+ ......+..++...|.|++|.|++.||..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 34688899999999999999999998876544 345567889999999999999999999864
No 81
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.27 E-value=2.9e-06 Score=50.04 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHh
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~ 73 (147)
++++++......+|..+++ .+|.|+..+...++...+ ++.+.+..+|. |.+++|.++++||...++.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4678899999999999986 589999999999988776 67799999999 9999999999999987663
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.24 E-value=7.7e-06 Score=41.32 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 99 VSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 99 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
++..|++.+|+.+++.+.+.-+..+|..+|.+++|++.-+||..+++
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 67888999999999889999999999999999999999998888765
No 83
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.22 E-value=2.4e-06 Score=59.08 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=81.5
Q ss_pred HHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHH
Q 032081 47 AQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWI 124 (147)
Q Consensus 47 ~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 124 (147)
+.+..+|. +.+++|.++|.+....+..+...+.....++.+|+.|+...+|.++..+|..+|+... .+..-.+--+|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccccc
Confidence 44445555 8889999999999888888888888889999999999999999999999999987742 23334456788
Q ss_pred HHhccCCCCceeHHHHHHHHh
Q 032081 125 REVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 125 ~~~d~~~~g~i~~~ef~~~l~ 145 (147)
...+...+|+|++.+|.++..
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred hhhhcccCcceeHHHHHHHHH
Confidence 889989999999999998764
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.22 E-value=2.3e-06 Score=37.07 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=13.9
Q ss_pred HHHHhhhCCCCCCcccHHHHHHH
Q 032081 85 RDAFKVLDKDNTGFVSVSDLRHI 107 (147)
Q Consensus 85 ~~~f~~~D~~~~g~I~~~e~~~~ 107 (147)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34566666666666666666554
No 85
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=3.9e-05 Score=58.80 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCC-----
Q 032081 5 LSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKP----- 77 (147)
Q Consensus 5 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~----- 77 (147)
+|+++...-...|..+.+. .|+|+-.+-+.++...| ++...+.++|- |.+++|+++..||--.+......
T Consensus 10 vT~~Er~K~~~qF~~Lkp~-~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~ 86 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKPG-QGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQ 86 (1118)
T ss_pred cchHHHHHHHHHHhccCCC-CCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCc
Confidence 4666766666677766644 78888888888777666 44556667776 88888888888887655432100
Q ss_pred --------------------------------------------------------------------------------
Q 032081 78 -------------------------------------------------------------------------------- 77 (147)
Q Consensus 78 -------------------------------------------------------------------------------- 77 (147)
T Consensus 87 lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~ 166 (1118)
T KOG1029|consen 87 LPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLP 166 (1118)
T ss_pred CCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred ---------C---------------ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCC
Q 032081 78 ---------E---------------PFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDG 133 (147)
Q Consensus 78 ---------~---------------~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g 133 (147)
+ ...-..+++|+.+|+.-.|+++-.+=+.+|...+ ++...+..++...|.|+||
T Consensus 167 ~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DG 244 (1118)
T KOG1029|consen 167 HDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDG 244 (1118)
T ss_pred CCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCC
Confidence 0 0001356789999999999999999999998877 6777899999999999999
Q ss_pred ceeHHHHHHHH
Q 032081 134 KIKYEDFIARM 144 (147)
Q Consensus 134 ~i~~~ef~~~l 144 (147)
+++-+||+-++
T Consensus 245 kL~~dEfilam 255 (1118)
T KOG1029|consen 245 KLSADEFILAM 255 (1118)
T ss_pred cccHHHHHHHH
Confidence 99999998654
No 86
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.11 E-value=8.4e-06 Score=66.16 Aligned_cols=65 Identities=31% Similarity=0.538 Sum_probs=57.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCC--H-----HHHHHHHHHhccCCCCceeHHHHHHHHhcC
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLE--P-----SEFDEWIREVDVGSDGKIKYEDFIARMVAK 147 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~--~-----~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 147 (147)
.+..+|..||.+.+|.++..+|+.+|++.|+.++ + .++.+++...|++.+|+|++++|+++|-++
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 5667899999999999999999999999987652 3 378999999999999999999999998653
No 87
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.10 E-value=1.6e-05 Score=58.30 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=63.0
Q ss_pred CCCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCC---CCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhc
Q 032081 2 GKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGN---PTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHM 75 (147)
Q Consensus 2 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~ 75 (147)
.+++|++++..++..|...| +++|+++..++..++...+.. ..++++..++. +.+.+|+|+|++|+..+....
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 46789999999999999999 999999999999999886543 35788888888 788899999999999776553
No 88
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.04 E-value=1.1e-05 Score=34.84 Aligned_cols=25 Identities=28% Similarity=0.601 Sum_probs=22.1
Q ss_pred HHHHHHHhccCCCCceeHHHHHHHH
Q 032081 120 FDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 120 ~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
++.+|..+|.|++|.|+.+||.+.+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999998864
No 89
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.02 E-value=8.1e-05 Score=45.95 Aligned_cols=98 Identities=13% Similarity=0.193 Sum_probs=73.2
Q ss_pred HhcchhccCCCCccCHHHHHHHHHHcC-CCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHH----HHHHH
Q 032081 15 EAFTLFDTDGDGKIAPSELGILMRSLG-GNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDR----QLRDA 87 (147)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~----~~~~~ 87 (147)
++-..|..|+.|.+++.+|...+..+. ..+..-.+.-.|. |.++++.|.-.+....+..+....-..+ ....+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 455678889999999999999888764 3333334444444 8899999999998888887765543333 34556
Q ss_pred HhhhCCCCCCcccHHHHHHHHHhcC
Q 032081 88 FKVLDKDNTGFVSVSDLRHILTSIG 112 (147)
Q Consensus 88 f~~~D~~~~g~I~~~e~~~~l~~~~ 112 (147)
.+..|.+|+|.++..+|..+..+..
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhCc
Confidence 7778999999999999999876643
No 90
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.96 E-value=3e-05 Score=56.01 Aligned_cols=61 Identities=20% Similarity=0.410 Sum_probs=37.0
Q ss_pred HHHHhcchhccCCCCccCHHHHHHHHHHc----CCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHH
Q 032081 12 SMKEAFTLFDTDGDGKIAPSELGILMRSL----GGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMA 72 (147)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~ 72 (147)
.|..+|+..|.|++|.|+.+||..++.-+ ....+.+++.++.+ |.+++|.|++.||+..+.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 34556666666666666666666554432 34555666666666 666666666666666554
No 91
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.88 E-value=7.2e-05 Score=37.82 Aligned_cols=45 Identities=7% Similarity=0.176 Sum_probs=24.0
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHH
Q 032081 28 IAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMA 72 (147)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~ 72 (147)
+++.|++.+|+.+++.++..-+..+|. |.+++|++.-+||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 455666666666666666666666666 555566666666665554
No 92
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.81 E-value=0.00014 Score=41.08 Aligned_cols=62 Identities=15% Similarity=0.387 Sum_probs=51.9
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHHhccC----CCCceeHHHHHHHHhc
Q 032081 84 LRDAFKVLDKDNTGFVSVSDLRHILTSIGE--KLEPSEFDEWIREVDVG----SDGKIKYEDFIARMVA 146 (147)
Q Consensus 84 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 146 (147)
+..+|..+.. +.+.|+.++|...|..... ..+.+.+..++..+..+ ..+.+++++|..+|.+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5678888855 7899999999999987742 46889999999998765 4789999999999875
No 93
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.70 E-value=0.00018 Score=53.05 Aligned_cols=63 Identities=30% Similarity=0.621 Sum_probs=55.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCC---CCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEK---LEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..++..|...| +++|+|+..++..++...+.. ...+++++++...+.|.+|+|++++|+.++.
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 46778899999 999999999999999988643 3478899999999999999999999998653
No 94
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.69 E-value=0.00013 Score=52.94 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=76.9
Q ss_pred HHHHhcchhccCCCCccCHHHHHH--HHHHcC------------CCCCHHHHHHH----Hh-hcCCCCCcchHHHHHHHH
Q 032081 12 SMKEAFTLFDTDGDGKIAPSELGI--LMRSLG------------GNPTQAQLKSI----IS-EEKLTAPFDFPRFLDLMA 72 (147)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~--~l~~~~------------~~~~~~~~~~~----~~-~~~~~~~i~~~ef~~~~~ 72 (147)
.+.++|..+++..+|.|+..++.. ++..+. .-.+.+....+ |. |.++++.|+-++......
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 357889999999999999999854 222211 00111111111 22 555556665555444433
Q ss_pred hhcCCCChHHHHHHHHh----hhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHH
Q 032081 73 KHMKPEPFDRQLRDAFK----VLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIAR 143 (147)
Q Consensus 73 ~~~~~~~~~~~~~~~f~----~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 143 (147)
.-. ....+.++|. .+-.-.+|.++.++|..++-+....-++.-+..+|+-+|.+++|.++..|..-+
T Consensus 306 ~tl----t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~f 376 (493)
T KOG2562|consen 306 HTL----TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYF 376 (493)
T ss_pred cch----hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHH
Confidence 221 2245666776 333456677888888877777655556667777888888888888877765433
No 95
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.64 E-value=0.00034 Score=50.75 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc
Q 032081 41 GGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSI 111 (147)
Q Consensus 41 ~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 111 (147)
|.......+..+|. |.+++|.|+.+||+. ...+|..+|.|++|.|+.+||..++...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 56667778888888 999999999999852 4678999999999999999999998653
No 96
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.61 E-value=0.0011 Score=52.12 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=83.9
Q ss_pred CCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCH-HH-HHHHHh-----hcCCCCCcchHHHHHHHHhhc
Q 032081 3 KDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQ-AQ-LKSIIS-----EEKLTAPFDFPRFLDLMAKHM 75 (147)
Q Consensus 3 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-~~-~~~~~~-----~~~~~~~i~~~ef~~~~~~~~ 75 (147)
+..++.....+...|+.+++...|.++.+++..+|..+|.+.-+ +. +..+++ ++...|.+++.+|.+.+....
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 45677888899999999999999999999999999999987774 22 333333 555568899999999999888
Q ss_pred CCCChHHHHHHHHhhhCCCCCCcccHHHHHH
Q 032081 76 KPEPFDRQLRDAFKVLDKDNTGFVSVSDLRH 106 (147)
Q Consensus 76 ~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~ 106 (147)
...+....+..+|+.+-++.. +|..+||..
T Consensus 819 e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 819 EDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 888887888889998865554 788888887
No 97
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00044 Score=41.00 Aligned_cols=59 Identities=25% Similarity=0.470 Sum_probs=44.0
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhc------CC---C-CCHHHHHH----HHHHhccCCCCceeHHHHHHHH
Q 032081 86 DAFKVLDKDNTGFVSVSDLRHILTSI------GE---K-LEPSEFDE----WIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 86 ~~f~~~D~~~~g~I~~~e~~~~l~~~------~~---~-~~~~~~~~----~~~~~d~~~~g~i~~~ef~~~l 144 (147)
.-|.++|.++++.|+--|+..++.-+ |. + .++.++.. +++--|.|++|.|+|-||++..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 46889999999999999988887543 21 2 24445444 5556688999999999998753
No 98
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.42 E-value=0.0025 Score=40.69 Aligned_cols=132 Identities=19% Similarity=0.177 Sum_probs=84.6
Q ss_pred HHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh-----hcCCCCCcchHHHH---HHHHhhcCCC----
Q 032081 11 SSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS-----EEKLTAPFDFPRFL---DLMAKHMKPE---- 78 (147)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~ef~---~~~~~~~~~~---- 78 (147)
..|++-..-+|+|+||.|.+-|-...++.+|+.+....+..++- -+...+-+.-.-|- .-+..-.+.+
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 45666778899999999999999999999998887666555554 11122211111111 1111111111
Q ss_pred ------ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc-------CCCCCHHHHHHHHHHhccCCCCceeHHHHHHH
Q 032081 79 ------PFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSI-------GEKLEPSEFDEWIREVDVGSDGKIKYEDFIAR 143 (147)
Q Consensus 79 ------~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 143 (147)
-..+.+..+|..++..+.+.+|..|+.++++.- |...+.-+...++... .+++|.+..+....+
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 124689999999999899999999999999773 2222333444444443 477899988876554
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.41 E-value=0.00029 Score=30.51 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=13.4
Q ss_pred HHHHHHhccCCCCceeHHHHHHHHh
Q 032081 121 DEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 121 ~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..++..+|.+++|.|++.+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3455555555555555555555544
No 100
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.35 E-value=5.6e-05 Score=45.33 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=26.3
Q ss_pred hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHH
Q 032081 55 EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRH 106 (147)
Q Consensus 55 ~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~ 106 (147)
|.+++|.++..|+..+...+ ......++..|+.+|.|++|.|+..|...
T Consensus 64 D~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 64 DRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp --T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred cCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 66677777777765554433 11224566777777777777777777643
No 101
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.0015 Score=38.80 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHc------CC----CCCHHHHHHHHh------hcCCCCCcchHHH
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSL------GG----NPTQAQLKSIIS------EEKLTAPFDFPRF 67 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~----~~~~~~~~~~~~------~~~~~~~i~~~ef 67 (147)
++|+++++- ..|...|-|++|.|+--|+.+++..+ |. -+++.++.++.. |.+++|.|+|-||
T Consensus 62 ~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 456665543 67889999999999999998887643 21 134556655555 6777788888887
Q ss_pred HH
Q 032081 68 LD 69 (147)
Q Consensus 68 ~~ 69 (147)
+.
T Consensus 140 lK 141 (144)
T KOG4065|consen 140 LK 141 (144)
T ss_pred Hh
Confidence 64
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.23 E-value=0.00074 Score=29.12 Aligned_cols=27 Identities=30% Similarity=0.757 Sum_probs=23.3
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHh
Q 032081 84 LRDAFKVLDKDNTGFVSVSDLRHILTS 110 (147)
Q Consensus 84 ~~~~f~~~D~~~~g~I~~~e~~~~l~~ 110 (147)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 467889999999999999999988764
No 103
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.22 E-value=0.00065 Score=45.71 Aligned_cols=64 Identities=19% Similarity=0.395 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHh-cCCCC--CHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 81 DRQLRDAFKVLDKDNTGFVSVSDLRHILTS-IGEKL--EPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 81 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~-~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
.+.+..+|...|.|.+|+|+..|+++.... ....+ +.++-...|+..|.|++|.|+++||.--+
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 357888999999999999999999887644 22111 22334457888999999999999986543
No 104
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.20 E-value=0.0013 Score=46.03 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=78.8
Q ss_pred HHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCC-CCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHH
Q 032081 9 QVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGN-PTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLR 85 (147)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 85 (147)
.-..+...|..||.+++|.+++.+-...+.-+..+ .+..-++-.|. +...+|.++-.+|-.+++....-.. -.+.
T Consensus 257 vsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~--l~v~ 334 (412)
T KOG4666|consen 257 VSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEV--LRVP 334 (412)
T ss_pred hhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcce--eecc
Confidence 33567789999999999999999888877776544 44555555565 7777888888888777776554322 2677
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhcC
Q 032081 86 DAFKVLDKDNTGFVSVSDLRHILTSIG 112 (147)
Q Consensus 86 ~~f~~~D~~~~g~I~~~e~~~~l~~~~ 112 (147)
..|...++..+|.|+.++|+.+....+
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHhCc
Confidence 889999999999999999999986654
No 105
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=96.60 E-value=0.00071 Score=36.70 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=40.6
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccC-------CCCceeHHHHHHHH
Q 032081 80 FDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVG-------SDGKIKYEDFIARM 144 (147)
Q Consensus 80 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~l 144 (147)
..+.+..+|+.+ .+++++||.+||++.|. ++.++-+...+..- ..|.++|..|+..|
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 347899999999 88999999999998863 23345555555432 23679999997643
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=96.52 E-value=0.059 Score=41.47 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=48.3
Q ss_pred CCCcchHHHHHHHHhhcC-CCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHHhc-------
Q 032081 59 TAPFDFPRFLDLMAKHMK-PEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGE--KLEPSEFDEWIREVD------- 128 (147)
Q Consensus 59 ~~~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d------- 128 (147)
.|.++|++|..++..+.. .......+..+|..+-. +.+.++.++|..+|..... ..+.+.+..++..+-
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 356777777666554421 11123566777777643 3356777777777766542 244455555544321
Q ss_pred cCCCCceeHHHHHHHHhc
Q 032081 129 VGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 129 ~~~~g~i~~~ef~~~l~~ 146 (147)
....+.+++++|..+|.+
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 112235778888777753
No 107
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.44 E-value=0.11 Score=41.55 Aligned_cols=119 Identities=11% Similarity=0.286 Sum_probs=84.6
Q ss_pred ccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh----hcCC-----CCCcchHHHHHHHHhhcCCCChHHHHHHHHhhh
Q 032081 21 DTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS----EEKL-----TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVL 91 (147)
Q Consensus 21 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~----~~~~-----~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~ 91 (147)
..+..|.|....+.+.+..-. .+.-+...+. -.++ ....+++.|..++..++.. ..+..+|..+
T Consensus 158 qvn~~grip~knI~k~F~~~k---~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR----~eie~iF~ki 230 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSADK---KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR----PEIEEIFRKI 230 (1189)
T ss_pred cccccccccHHHHHHHhhcCC---chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc----hhHHHHHHHh
Confidence 346688888877766555322 1133444443 1122 2346777788888877654 4788899999
Q ss_pred CCCCCCcccHHHHHHHHHhcC----------CCCCHHHHHHHHHHhccC----CCCceeHHHHHHHHhc
Q 032081 92 DKDNTGFVSVSDLRHILTSIG----------EKLEPSEFDEWIREVDVG----SDGKIKYEDFIARMVA 146 (147)
Q Consensus 92 D~~~~g~I~~~e~~~~l~~~~----------~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 146 (147)
..++.-++|.++|..++..-. ....+..+..+++.+..| ..|.++-+.|+++|..
T Consensus 231 ~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 231 SGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 888889999999999997752 235678889999998876 5788999999998864
No 108
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.43 E-value=0.0024 Score=44.78 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=47.7
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHH---HHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 79 PFDRQLRDAFKVLDKDNTGFVSVSDL---RHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 79 ~~~~~~~~~f~~~D~~~~g~I~~~e~---~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
+.+..+.+-|..+|.|.++.|...|+ +.++.+.. -.......++...|.|+|-+|++.||..+|.
T Consensus 330 DeeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 330 DEERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred ChhheeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 33346777899999999999998884 44444433 2334567788899999999999999988764
No 109
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.013 Score=43.57 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=52.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
+.....|+.+-.|-.|+|+-.--++++.+.. +...++..+++..|.+.||-+++.||+.++
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 4556679999999999999988888886654 677899999999999999999999999875
No 110
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.13 E-value=0.03 Score=31.43 Aligned_cols=60 Identities=17% Similarity=0.341 Sum_probs=39.7
Q ss_pred HHHhcchhccCCCCccCHHHHHHHHHHc-CC-CCCHHHHHHHHh------hcCCCCCcchHHHHHHHHh
Q 032081 13 MKEAFTLFDTDGDGKIAPSELGILMRSL-GG-NPTQAQLKSIIS------EEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~------~~~~~~~i~~~ef~~~~~~ 73 (147)
+..+|..+.. +.+.|+..+|..+|..- +- ..+.+.+..++. .....+.++++.|..++..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5667777755 67888888888888763 22 346777777776 1124567777777777653
No 111
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.91 E-value=0.024 Score=42.87 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCC
Q 032081 3 KDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKP 77 (147)
Q Consensus 3 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~ 77 (147)
-++++++....+..|..+|.++.|+++..+..+++...+...+.+.+.+++. +...+|.+...+|..+.......
T Consensus 585 i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 585 IKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred cccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 3578999999999999999999999999999999999888899999999998 56668999999999988766443
No 112
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.71 E-value=0.18 Score=28.92 Aligned_cols=62 Identities=19% Similarity=0.369 Sum_probs=41.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhc-------CC----CCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSI-------GE----KLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
++.+.+|..+ .|.+|.++...|..+|+.. |+ .-.+..++.+|.... .+..|+.++|+..|..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 5788899999 6889999999998888775 21 125566778888763 4567999999998864
No 113
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=95.64 E-value=0.041 Score=38.56 Aligned_cols=62 Identities=21% Similarity=0.431 Sum_probs=45.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhc-----CCCCCHHHH-----------HHHHHHhccCCCCceeHHHHHHHH
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSI-----GEKLEPSEF-----------DEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-----~~~~~~~~~-----------~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
.-+..|.++|.|++|+++..|+..++..- ...-.+.+. ..++..+|.|++.-||++||++.-
T Consensus 245 dPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 245 DPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred CcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 45678999999999999999998886542 111111111 236788999999999999999753
No 114
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.61 E-value=0.024 Score=43.35 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=52.4
Q ss_pred cchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHH
Q 032081 62 FDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYED 139 (147)
Q Consensus 62 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 139 (147)
+.|..|...+.....-........++|+.+|.+++|.|+..++..-|..+...-..+.+..++..++.+++ ..+.++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 33444444444333333333467789999999999999999999988887655556677888888888776 554443
No 115
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.071 Score=39.79 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCC
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKP 77 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~ 77 (147)
++|+++.+.....|+-+-+|.+|.|+-.--+.++.+.. ++-+++..+|. |.+.+|-+++.||...++.....
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaR 297 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVAR 297 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheeec
Confidence 47889999999999999999999999888777776554 56678888898 89999999999999988865544
No 116
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.50 E-value=0.035 Score=39.44 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 81 DRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 81 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
...+-++|..+|.|.+|.++..|++.+-.. -.+..+..+|+..|...+|.|+-.||..++.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 357889999999999999999998876422 4566789999999999999999999987664
No 117
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.32 E-value=0.23 Score=31.56 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=43.5
Q ss_pred hhCCCCCCcccHHHHHHHHHhcC---CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 90 VLDKDNTGFVSVSDLRHILTSIG---EKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 90 ~~D~~~~g~I~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
.|-..+...++-..|..+|+..+ ..++..+++-+|..+-.....+|+|++|+.+|.
T Consensus 10 ~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 10 SFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp CSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 33455667899999999999985 347889999999998777777899999999875
No 118
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.28 E-value=0.25 Score=39.41 Aligned_cols=142 Identities=13% Similarity=0.191 Sum_probs=91.4
Q ss_pred CCHHHHHHH-HHhcchhccCCCCccCHHHHHHHHHHcCCCCCHH-HHHHHHh-hcCCCCCcchHHHHHHHHhhcCCCChH
Q 032081 5 LSDDQVSSM-KEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQA-QLKSIIS-EEKLTAPFDFPRFLDLMAKHMKPEPFD 81 (147)
Q Consensus 5 ~~~~~~~~l-~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~i~~~ef~~~~~~~~~~~~~~ 81 (147)
.++..+..| .+.+...|...-..++..+++..|...++.++.. .+.+-+. +....+.++|++|..++..++-.....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs~~~a 216 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFSQQKA 216 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhccchh
Confidence 455666664 6778888887778899999999999887776654 3435555 777788899999999988776544332
Q ss_pred HHHHH----HHhhhCCCCCCcccHHHHHHHHHhcCC-CCCH--HHHHHHHHHhcc-----CCCCceeHHHHHHHHhc
Q 032081 82 RQLRD----AFKVLDKDNTGFVSVSDLRHILTSIGE-KLEP--SEFDEWIREVDV-----GSDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~----~f~~~D~~~~g~I~~~e~~~~l~~~~~-~~~~--~~~~~~~~~~d~-----~~~g~i~~~ef~~~l~~ 146 (147)
..+.. +...=+...-..++..+|.++|..-.. .... ..+++++..|-. -....++..||+.+|-+
T Consensus 217 ~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 217 ILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred hhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 11111 112222333467899999999865431 1111 133444444322 24568999999998754
No 119
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.22 E-value=0.044 Score=45.84 Aligned_cols=57 Identities=26% Similarity=0.475 Sum_probs=48.1
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 87 AFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 87 ~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
.|..+|++|.|.|+..+|..++.... .-+..+++-++.-...+.+.-++|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 47778999999999999999998744 3577788888888888899999999998643
No 120
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.059 Score=42.29 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=52.8
Q ss_pred HHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHh
Q 032081 10 VSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~ 73 (147)
.......|+.+|+..+|+|+-.+-+.+|...+ ++...+..+|. |.+++|.++-+||+-.+..
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 34457789999999999999999999988766 56777888888 9999999999999976654
No 121
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.80 E-value=0.091 Score=39.93 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=56.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..+.-|..+|.+..|+++..+...+|+..+...+.+.+.+.++..+.+-+|.+.+.||...+.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 344678999999999999999999999998889999999999999999999999999988764
No 122
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.38 E-value=0.21 Score=38.22 Aligned_cols=67 Identities=24% Similarity=0.358 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCC----CHHHHHHHHhhcCCCCCcchHHHHHHHHhh
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNP----TQAQLKSIISEEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 74 (147)
.+++.-++.+..+|..+|.|+||.++..|+..++....-.+ +..+.. ..+..|.+++.-|+.-+...
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t----~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST----VKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc----eecccceeehhhHHHHHHHH
Confidence 57888899999999999999999999999999998875444 111110 23467899999999887643
No 123
>PLN02952 phosphoinositide phospholipase C
Probab=94.26 E-value=0.94 Score=35.19 Aligned_cols=87 Identities=8% Similarity=0.060 Sum_probs=60.2
Q ss_pred CCCccCHHHHHHHHHHcCC--CCCHHHHHHHHh-hcCCCCCcchHHHHHHHHhhcCCCC-hHHHHHHHHhhh----C---
Q 032081 24 GDGKIAPSELGILMRSLGG--NPTQAQLKSIIS-EEKLTAPFDFPRFLDLMAKHMKPEP-FDRQLRDAFKVL----D--- 92 (147)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~-~~~~~~~i~~~ef~~~~~~~~~~~~-~~~~~~~~f~~~----D--- 92 (147)
+.|.+++++|..+.+.+.. ..+..++..+|. -..+.+.++.++|..++........ ..+....++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 4689999999988777643 347899999998 3334478999999999987765442 223444444322 1
Q ss_pred CCCCCcccHHHHHHHHHh
Q 032081 93 KDNTGFVSVSDLRHILTS 110 (147)
Q Consensus 93 ~~~~g~I~~~e~~~~l~~ 110 (147)
..+.+.++.+.|...|.+
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 123356899999988854
No 124
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.03 E-value=0.36 Score=30.66 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=43.2
Q ss_pred HHhcchh---ccCCCCccCHHHHHHHHHHc---CCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 14 KEAFTLF---DTDGDGKIAPSELGILMRSL---GGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 14 ~~~f~~~---d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
+.+|..| -+.+...|+...|.+++..- +-.++..++..+|. ...+..+|+|++|+..+..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3444444 35567789999999999873 45688999999998 33445679999999988643
No 125
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.83 E-value=0.04 Score=38.87 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=46.7
Q ss_pred hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc
Q 032081 55 EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSI 111 (147)
Q Consensus 55 ~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 111 (147)
|.++++.|.-.||.-+=..+.+......-.+.+|+..|.|++..|+..|++..|...
T Consensus 343 dkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 343 DKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred cccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 888889998888776655555555566788999999999999999999999888654
No 126
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.76 E-value=0.72 Score=26.48 Aligned_cols=62 Identities=21% Similarity=0.431 Sum_probs=38.1
Q ss_pred HHHHHhcchhccCCCCccCHHHHHHHHHHc-------C----CCCCHHHHHHHHhhcCCCCCcchHHHHHHHHh
Q 032081 11 SSMKEAFTLFDTDGDGKIAPSELGILMRSL-------G----GNPTQAQLKSIISEEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 73 (147)
.+++-+|..+ .|++|.++...|..+|+.. | +...+..+...|........|+..+|++++..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHh
Confidence 3456677777 5779999999998888732 1 22367777777764445677888888888763
No 127
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.82 E-value=1.3 Score=35.02 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=59.7
Q ss_pred hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCc
Q 032081 55 EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGK 134 (147)
Q Consensus 55 ~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~ 134 (147)
|.+++|.+++.+-..+......... ...++..|+..+..+++.+...++..+....+..+ ++..+|..+..+ .+.
T Consensus 146 d~~~~~~~~~~~~~~~~~~~n~~l~-~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ 220 (746)
T KOG0169|consen 146 DKNKNGHMSFDEVLDLLKQLNVQLS-ESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEY 220 (746)
T ss_pred ccccccccchhhHHHHHHHHHHhhh-HHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCc
Confidence 8888999999998887765543332 25777888888889999999999988887765433 555555555543 556
Q ss_pred eeHHHHHHHH
Q 032081 135 IKYEDFIARM 144 (147)
Q Consensus 135 i~~~ef~~~l 144 (147)
++..++.++|
T Consensus 221 ls~~~L~~Fl 230 (746)
T KOG0169|consen 221 LSTDDLLRFL 230 (746)
T ss_pred cCHHHHHHHH
Confidence 6666555544
No 128
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.65 E-value=0.75 Score=29.69 Aligned_cols=32 Identities=9% Similarity=0.244 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 115 LEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 115 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
+.+..++++|..++..+.+.+|+.|..+++..
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 45778899999999988889999999888765
No 129
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.63 E-value=0.45 Score=38.26 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=53.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCH-----HHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEP-----SEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
..++..|+-+++...|.++.+++..+|..+|..... .++..++...+.+..|.|++.+|...|.+
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 478889999999999999999999999999977654 23444566666677799999999988754
No 130
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=91.13 E-value=1.6 Score=33.93 Aligned_cols=59 Identities=10% Similarity=0.180 Sum_probs=47.4
Q ss_pred CCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHH
Q 032081 44 PTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDL 104 (147)
Q Consensus 44 ~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~ 104 (147)
.+..-+.++|+ |.+.+|.++|.+++..+........ -+.+.-+|..+|.+++ ....++.
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~-~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDA-LEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhH-HHHHHHHHhhccCCcc-ccccccc
Confidence 44556677777 8888999999999999887755433 3688889999999999 8888887
No 131
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=90.78 E-value=1.1 Score=26.10 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh-----hcCCCCCcchHHHHHHHHhh
Q 032081 9 QVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS-----EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~ef~~~~~~~ 74 (147)
....+...|..+.. +|+|+...|..++ |+.-+.+...++|. ..-....|+.+|...++...
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 35566666777765 7889998887754 55566777777776 22235678888877776633
No 132
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.76 E-value=1.8 Score=30.68 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=49.4
Q ss_pred hcchhccCCCCccCHHHHHHHHHH-c----CCCCCHHHHHHHH----h---------hcCCCCCcchHHHHHHHHhhcCC
Q 032081 16 AFTLFDTDGDGKIAPSELGILMRS-L----GGNPTQAQLKSII----S---------EEKLTAPFDFPRFLDLMAKHMKP 77 (147)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~-~----~~~~~~~~~~~~~----~---------~~~~~~~i~~~ef~~~~~~~~~~ 77 (147)
.|...|-|++|.++-.++..++.. + .-.-.++++..+- + |.+.+..|+.++|+.........
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef~ 328 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEFN 328 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcccC
Confidence 567778889999999999887754 2 2222222222211 1 77778888888888775543332
Q ss_pred CChHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 032081 78 EPFDRQLRDAFKVLDKDNTGFVSVSDLRHIL 108 (147)
Q Consensus 78 ~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l 108 (147)
++. .-|..++ ....-|.+|++++=
T Consensus 329 ~p~-----e~WEtl~--q~~~yTeEEL~~fE 352 (442)
T KOG3866|consen 329 PPK-----EEWETLG--QKKVYTEEELQQFE 352 (442)
T ss_pred Ccc-----hhhhhhc--ccccccHHHHHHHH
Confidence 222 2233332 33455666666553
No 133
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=90.71 E-value=2.8 Score=26.18 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=37.9
Q ss_pred CccCHHHHHHHHHHcCC-CCCHHHHHHHHh------hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCC
Q 032081 26 GKIAPSELGILMRSLGG-NPTQAQLKSIIS------EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDN 95 (147)
Q Consensus 26 g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~------~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 95 (147)
+.|++.||.++-.-... .-.-.++...|. ..+..+.|+|+.|..++...+.-.-..+....+|..|-...
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 56777777664332221 112234444443 33445689999999999988876666678889999985443
No 134
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.32 E-value=0.61 Score=39.73 Aligned_cols=57 Identities=26% Similarity=0.475 Sum_probs=46.2
Q ss_pred hcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHh
Q 032081 16 AFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~ 73 (147)
.|..+|+|+.|.|+..+|.++... ....+..++.-++. ..+.+..++|++|..-++.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 467899999999999999998764 33567778888887 6677889999999987654
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.02 E-value=1.9 Score=33.40 Aligned_cols=63 Identities=14% Similarity=0.328 Sum_probs=35.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHHhcc-CCCCceeHHHHHHHHhc
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGE--KLEPSEFDEWIREVDV-GSDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~ 146 (147)
..+..+|..+.. ++.++.++|..+|..... ..+.+.+..+++.+.. .+.+.++++.|.++|.+
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 356666666532 356666666666665532 2345555566665432 23445677777766643
No 136
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=89.95 E-value=2.7 Score=24.92 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=38.6
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 85 RDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 85 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
..+|.+++.-|+-..+..+++.+|.+.|....++.+..++....
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 35677777889889999999999999999999999999988875
No 137
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.63 E-value=0.64 Score=37.67 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=49.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIA 142 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 142 (147)
....+|...|.+.+|.|+-.+....+...| +....+..++...+....|.+++.+|.-
T Consensus 284 ~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~ 341 (847)
T KOG0998|consen 284 KYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFAL 341 (847)
T ss_pred HHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccch
Confidence 455679999999999999999999988866 6777889999999999999999997754
No 138
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.54 E-value=0.39 Score=34.69 Aligned_cols=57 Identities=28% Similarity=0.411 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCC-CHHHHHHHHHHhccCCCCceeH
Q 032081 81 DRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKL-EPSEFDEWIREVDVGSDGKIKY 137 (147)
Q Consensus 81 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~-~~~~~~~~~~~~d~~~~g~i~~ 137 (147)
.+.++++|..+|+.++|+|+.+-++.++....... .++.+..+-...+...-|.|-.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~ 365 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILL 365 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEe
Confidence 46899999999999999999999999998887333 3344444444444444444433
No 139
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=89.26 E-value=2.9 Score=24.28 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=48.0
Q ss_pred CCccCHHHHHHHHHHc--CCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCccc
Q 032081 25 DGKIAPSELGILMRSL--GGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVS 100 (147)
Q Consensus 25 ~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~ 100 (147)
||.++..|...+-..+ .+..+..+...+.. ........++.+|...+............+..+|.+.- -+|.++
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~~ 90 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGELD 90 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCCC
Confidence 7888888876654432 13455666666666 33344567888888887765432223345556666653 457777
Q ss_pred HHHHH
Q 032081 101 VSDLR 105 (147)
Q Consensus 101 ~~e~~ 105 (147)
..|-.
T Consensus 91 ~~E~~ 95 (104)
T cd07313 91 EYEEH 95 (104)
T ss_pred HHHHH
Confidence 77744
No 140
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=87.46 E-value=3.7 Score=23.30 Aligned_cols=40 Identities=3% Similarity=-0.021 Sum_probs=29.1
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCcee
Q 032081 97 GFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIK 136 (147)
Q Consensus 97 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 136 (147)
..||..||....+.++.+++.+++..++..+..+.-...+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn 52 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFN 52 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 3578888888888888888888888888777655433333
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=87.24 E-value=5 Score=31.18 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=12.2
Q ss_pred CHHHHHHHHhhcCCCCCcchHHHHHHHHh
Q 032081 45 TQAQLKSIISEEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 45 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 73 (147)
+.+++..+|....+++.++.++|..++..
T Consensus 22 ~~~ei~~if~~~s~~~~~t~~~~~~FL~~ 50 (567)
T PLN02228 22 PPVSIKRLFEAYSRNGKMSFDELLRFVSE 50 (567)
T ss_pred CcHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 44444444442222234445554444443
No 142
>PLN02230 phosphoinositide phospholipase C 4
Probab=86.42 E-value=5.7 Score=31.07 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=42.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHHhccC-------CCCceeHHHHHHHHhc
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGE---KLEPSEFDEWIREVDVG-------SDGKIKYEDFIARMVA 146 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~l~~ 146 (147)
..+..+|..+- .+++.++.++|..+|..... ..+.+++..++..+... ..+.+++++|..+|.+
T Consensus 29 ~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 57778888884 34478888888888877652 23555566666544221 2345888999888764
No 143
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=86.13 E-value=2.6 Score=30.39 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=68.3
Q ss_pred HHHHhcchhccCCCCccCHHHHHHHHHHcC---CCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHH
Q 032081 12 SMKEAFTLFDTDGDGKIAPSELGILMRSLG---GNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRD 86 (147)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 86 (147)
+|+..|..+=.+.++......+..+-..|. +++=..++.=+|+ |.+.++.++..|...+.... .+.-++.
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~Cikp 286 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEACIKP 286 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC-----chhHHHH
Confidence 456677776666666666666655544443 2233566777777 88889999999877665433 3368899
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhcC
Q 032081 87 AFKVLDKDNTGFVSVSDLRHILTSIG 112 (147)
Q Consensus 87 ~f~~~D~~~~g~I~~~e~~~~l~~~~ 112 (147)
+|+..|...+|.|+-.|.-..+....
T Consensus 287 FfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 287 FFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHhhhcccccCccccchhhhhhccCC
Confidence 99999999999999999888876655
No 144
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=84.78 E-value=2.6 Score=20.64 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=24.5
Q ss_pred HHHHHHHHhcchhcc--CCCCccCHHHHHHHHHH
Q 032081 8 DQVSSMKEAFTLFDT--DGDGKIAPSELGILMRS 39 (147)
Q Consensus 8 ~~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~ 39 (147)
..+..+..+|+.|.. ....+++..||+.++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456677888988862 34779999999998875
No 145
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.06 E-value=0.58 Score=37.91 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhc
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHM 75 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~ 75 (147)
.+++.....+..+|...|.+++|.|+..+....+...| ++...+..+|. +..+.+.+++.+|.-.+....
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 46778888899999999999999999999999888744 67778888888 888899999998877665443
No 146
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=83.99 E-value=1.3 Score=24.10 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=27.2
Q ss_pred CCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc
Q 032081 60 APFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSI 111 (147)
Q Consensus 60 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 111 (147)
-.|+|...+..+...... ..+..+...|+.=..+.|+.+||.+.++..
T Consensus 7 p~~~F~~L~~~l~~~l~~----~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPP----SKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 446666666666655433 233333333433456778888877777653
No 147
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.98 E-value=3.8 Score=32.42 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=52.4
Q ss_pred cchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--------CCCCHHHHHHHHHHhccCCCC
Q 032081 62 FDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG--------EKLEPSEFDEWIREVDVGSDG 133 (147)
Q Consensus 62 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~--------~~~~~~~~~~~~~~~d~~~~g 133 (147)
+++++|. ....+.+..++..|..+|. ++|.++.+++..++...- .+.+.+-...++...+.++.|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 7777777 3344456788888888886 888888888888876641 223344455677777777777
Q ss_pred ceeHHHHHHHHh
Q 032081 134 KIKYEDFIARMV 145 (147)
Q Consensus 134 ~i~~~ef~~~l~ 145 (147)
.+.++++...+.
T Consensus 77 y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 77 YITNEDLEILLL 88 (646)
T ss_pred eeeecchhHHHH
Confidence 777666655443
No 148
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.99 E-value=1.2 Score=32.31 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=50.3
Q ss_pred HHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh---hcCCCCCcchHHHHHHHHh
Q 032081 10 VSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS---EEKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~i~~~ef~~~~~~ 73 (147)
-..+++.|+.+|+.++|+|+..-+..++..++..+++.+.-.+.+ ++..-+.|-..+|+..+.+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p 374 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFP 374 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccC
Confidence 456889999999999999999999999988887777766666665 6666677777777666543
No 149
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=82.95 E-value=8 Score=23.23 Aligned_cols=52 Identities=12% Similarity=0.280 Sum_probs=39.7
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q 032081 86 DAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIA 142 (147)
Q Consensus 86 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 142 (147)
.+|.++-.-|+..+|.+++..+|+..|....+..+..++..+.. .+.+|.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34555556778889999999999999999988888888887752 44555543
No 150
>PLN02223 phosphoinositide phospholipase C
Probab=82.69 E-value=11 Score=29.20 Aligned_cols=65 Identities=5% Similarity=-0.080 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHH---HhcC--CCCCHHHHHHHHHHhccC--------CCCceeHHHHHHHHhc
Q 032081 81 DRQLRDAFKVLDKDNTGFVSVSDLRHIL---TSIG--EKLEPSEFDEWIREVDVG--------SDGKIKYEDFIARMVA 146 (147)
Q Consensus 81 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~l~~ 146 (147)
.+.++.+|..+- .+.|.++.+.+.+++ .... ...+.++.+.+++.+-.. +.+.+++++|.++|.+
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 367888888883 677888888888888 4442 345666666666654322 2356999999998865
No 151
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=82.31 E-value=2 Score=26.76 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=26.9
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcc-------CCCCceeHHHHHHHHh
Q 032081 95 NTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDV-------GSDGKIKYEDFIARMV 145 (147)
Q Consensus 95 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~l~ 145 (147)
..+.|+..||.++.+.+.. +...+..++..|.. +..+.|+|+.|..+|.
T Consensus 4 ~~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp --S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred ceeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 4577888888887766543 33456666666633 2355799999988775
No 152
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=82.17 E-value=7.1 Score=22.15 Aligned_cols=68 Identities=9% Similarity=-0.004 Sum_probs=37.9
Q ss_pred CCHHHHHHHHh-hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC
Q 032081 44 PTQAQLKSIIS-EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG 112 (147)
Q Consensus 44 ~~~~~~~~~~~-~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~ 112 (147)
++..+....++ ......-|++.+|...+......... .....+=..+|--++++||.=||--..+-++
T Consensus 4 ITK~eA~~FW~~~Fg~r~IVPW~~F~~~L~~~h~~~~~-~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGKRTIVPWSEFRQALQKVHPISSG-LEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp -SSHHHHHHHHHHHTT-SEEEHHHHHHHHHHHS--SSH-HHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred eccHHHHHHHHHHCCCCeEeeHHHHHHHHHHhcCCCch-HHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 44555666666 33444567888888777765544333 3334444556777777887777765555443
No 153
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=80.37 E-value=2.3 Score=17.31 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=8.3
Q ss_pred CCCCCCcccHHHHH
Q 032081 92 DKDNTGFVSVSDLR 105 (147)
Q Consensus 92 D~~~~g~I~~~e~~ 105 (147)
|.|++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 45667777666654
No 154
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=80.26 E-value=13 Score=23.98 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCC
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNP 44 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~ 44 (147)
+++++-+.++.++|..+-.+ .+-+...++-.++..+.++.
T Consensus 7 ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP~ 46 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIPK 46 (170)
T ss_pred cCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCCh
Confidence 57788888999999988754 66688999999999887554
No 155
>PLN02228 Phosphoinositide phospholipase C
Probab=79.55 E-value=17 Score=28.39 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=30.8
Q ss_pred HHHhcchhccCCCCccCHHHHHHHHHHcC--CCCCHHHHHHHHh--hc----CCCCCcchHHHHHHH
Q 032081 13 MKEAFTLFDTDGDGKIAPSELGILMRSLG--GNPTQAQLKSIIS--EE----KLTAPFDFPRFLDLM 71 (147)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~--~~----~~~~~i~~~ef~~~~ 71 (147)
+..+|..+.. ++.++.++|..+|.... ...+.+.+..++. .. ...+.++.+.|..++
T Consensus 26 i~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 26 IKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred HHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 3344444432 35788888888877642 2234455555555 11 122456666666553
No 156
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=78.60 E-value=12 Score=22.41 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=40.1
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHH
Q 032081 86 DAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIAR 143 (147)
Q Consensus 86 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 143 (147)
.+|.++...|+..||.+++..+|+..|....+..+..+++.+.. .++++.+..
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~ 57 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAA 57 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 34555556788899999999999999998888888888877752 445665543
No 157
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=77.70 E-value=6.9 Score=29.71 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=52.9
Q ss_pred HHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCCCChHHHHHHHH
Q 032081 10 VSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTA-PFDFPRFLDLMAKHMKPEPFDRQLRDAF 88 (147)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~ef~~~~~~~~~~~~~~~~~~~~f 88 (147)
.+..-.+|.++-+.+...++..+|..++.++|.....++--..|.++.... .+.|..|+..+..-+.+. ..++..|
T Consensus 484 l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~gv~yl~v~~~i~sel~D~---d~v~~~~ 560 (612)
T COG5069 484 LRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVSGVFYLDVLKGIHSELVDY---DLVTRGF 560 (612)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccccchHHHHHHHHhhhhcCh---hhhhhhH
Confidence 334455677666666778999999999999999988888888887554433 567777776665544332 3444444
Q ss_pred hhh
Q 032081 89 KVL 91 (147)
Q Consensus 89 ~~~ 91 (147)
..+
T Consensus 561 ~~f 563 (612)
T COG5069 561 TEF 563 (612)
T ss_pred HHH
Confidence 444
No 158
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=75.43 E-value=11 Score=20.42 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=22.5
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHh
Q 032081 28 IAPSELGILMRSLGGNPTQAQLKSIIS 54 (147)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (147)
++..++..++...|..++..++..++.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lr 40 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLR 40 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHC
Confidence 445678888888889999999999998
No 159
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=75.39 E-value=6.5 Score=22.77 Aligned_cols=53 Identities=2% Similarity=-0.048 Sum_probs=25.3
Q ss_pred CCCCcchHHHHHHHHhhcCC-CChHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 032081 58 LTAPFDFPRFLDLMAKHMKP-EPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTS 110 (147)
Q Consensus 58 ~~~~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 110 (147)
.+|.|+-.|-..+-..+... .-.......+...+........+..++...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46777777744443321110 111233344444444444455666666666554
No 160
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=74.34 E-value=16 Score=21.73 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=29.3
Q ss_pred hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc---C-CCCCHHHHHHHHHHhccC
Q 032081 55 EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSI---G-EKLEPSEFDEWIREVDVG 130 (147)
Q Consensus 55 ~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~---~-~~~~~~~~~~~~~~~d~~ 130 (147)
|...+..|++++....+..- .-|.+.|..-..-||..-+.++.-.. | ..++..-+..++..++..
T Consensus 13 DT~tS~YITLedi~~lV~~g-----------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~ 81 (107)
T TIGR01848 13 DTETSSYVTLEDIRDLVREG-----------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGS 81 (107)
T ss_pred CCCccceeeHHHHHHHHHCC-----------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChh
Confidence 34445556665554444311 12344444333345555555544322 2 223444555555555543
Q ss_pred C
Q 032081 131 S 131 (147)
Q Consensus 131 ~ 131 (147)
-
T Consensus 82 ~ 82 (107)
T TIGR01848 82 M 82 (107)
T ss_pred H
Confidence 3
No 161
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=74.33 E-value=12 Score=20.29 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=19.6
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 99 VSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 99 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
++.+++..++...|..++.+++..++..-+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKED 43 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCC
Confidence 344566777777677777777777766644
No 162
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=74.19 E-value=11 Score=20.16 Aligned_cols=22 Identities=9% Similarity=0.588 Sum_probs=17.8
Q ss_pred hhhCCCCCCcccHHHHHHHHHh
Q 032081 89 KVLDKDNTGFVSVSDLRHILTS 110 (147)
Q Consensus 89 ~~~D~~~~g~I~~~e~~~~l~~ 110 (147)
+++|...+.+|+.++++++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4578888889999998888765
No 163
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=73.96 E-value=7.7 Score=20.76 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=31.7
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCC
Q 032081 95 NTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGS 131 (147)
Q Consensus 95 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 131 (147)
.++.++..++...|...|..++.+.+...+..++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4577999999999988899899999999999888764
No 164
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=72.40 E-value=18 Score=21.48 Aligned_cols=40 Identities=13% Similarity=0.480 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHH
Q 032081 99 VSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIAR 143 (147)
Q Consensus 99 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 143 (147)
||.+++..+|+..|..++...+..++..+. ..+.++.+..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~ 56 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISK 56 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHH
Confidence 999999999999999999998888888864 2355666544
No 165
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=72.02 E-value=13 Score=19.86 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=29.3
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 95 NTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 95 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
.+-.|+.+.++..+...|.++++..+..+++.+-
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 4567999999999999999999999998887654
No 166
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=71.21 E-value=6.4 Score=22.03 Aligned_cols=33 Identities=18% Similarity=0.461 Sum_probs=17.5
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Q 032081 95 NTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDV 129 (147)
Q Consensus 95 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 129 (147)
..|+||.+++..+|.... ++++.+..++..+..
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLED 50 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHT
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHH
Confidence 457777777777775433 566667666666543
No 167
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=71.18 E-value=20 Score=23.61 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=24.2
Q ss_pred CCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Q 032081 92 DKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDV 129 (147)
Q Consensus 92 D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 129 (147)
..+.+|++..+++.+.+..-+..++.+++.++...-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 35788999999999998887766788888888877543
No 168
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=70.65 E-value=21 Score=21.53 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=33.8
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 87 AFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 87 ~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
+|.+.-..|+..+|.+++..+|+..|..+....+..++..+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 444444567778999999999999999888888888887774
No 169
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=70.19 E-value=11 Score=23.49 Aligned_cols=51 Identities=12% Similarity=0.226 Sum_probs=40.5
Q ss_pred CCCCcccHHHHHHHHHhcC---------CCCCHHHHHHHHHHhccCCCC-ceeHHHHHHHH
Q 032081 94 DNTGFVSVSDLRHILTSIG---------EKLEPSEFDEWIREVDVGSDG-KIKYEDFIARM 144 (147)
Q Consensus 94 ~~~g~I~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~l 144 (147)
=|+..||.+||.+++..-. ..+.++++..+...+...+.+ .+++.|-++..
T Consensus 79 lGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~~ 139 (141)
T PF12419_consen 79 LGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRAA 139 (141)
T ss_pred ECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHHh
Confidence 4778899999999987751 346889999999999887666 49999987753
No 170
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=68.32 E-value=16 Score=22.46 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh
Q 032081 1 MGKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS 54 (147)
Q Consensus 1 ~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (147)
|++.+|+++...++...-.+-+. +|.+|..++..... .+..-+...+.
T Consensus 1 Ma~~~T~eer~eLk~rIvElVRe-~GRiTi~ql~~~TG-----asR~Tvk~~lr 48 (127)
T PF06163_consen 1 MARVFTPEEREELKARIVELVRE-HGRITIKQLVAKTG-----ASRNTVKRYLR 48 (127)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHH-cCCccHHHHHHHHC-----CCHHHHHHHHH
Confidence 88999999999987766655544 89999999887543 44444444444
No 171
>PRK00523 hypothetical protein; Provisional
Probab=67.11 E-value=19 Score=19.74 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=30.1
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 94 DNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 94 ~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
..+-.|+.+.++..+.+.|.++++..+..+++.+.
T Consensus 35 ~~NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 35 RENPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred HHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 34678999999999999999999999999888763
No 172
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.45 E-value=30 Score=22.73 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=62.3
Q ss_pred HHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh------hcCCCCCcchHHHHHHHHhhcC------
Q 032081 9 QVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS------EEKLTAPFDFPRFLDLMAKHMK------ 76 (147)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~i~~~ef~~~~~~~~~------ 76 (147)
....++++|..||+..=-..+.+++..++..-++--....|..+.. +... . +|.+|+..+.....
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~-e--sf~~ylW~fv~~~Pi~~~~~ 127 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQ-N--DLVEFLWSFVNHQPQPRQRP 127 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHH-c--cHHHHHHhccCCCCccCCcc
Confidence 3456788999999988777888999888887776666666665555 2211 1 78888866532111
Q ss_pred ----CCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCC
Q 032081 77 ----PEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGE 113 (147)
Q Consensus 77 ----~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~ 113 (147)
-|...+....+...+=+.|-.+++..-.-.+|+..|.
T Consensus 128 ~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 128 TDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred ccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 0112233445555555556666666666666666653
No 173
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.36 E-value=19 Score=19.56 Aligned_cols=34 Identities=12% Similarity=0.302 Sum_probs=29.1
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 95 NTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 95 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
.+-.|+.+-++..+...|.++++..+.++++.+-
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4577999999999999999999999999887764
No 174
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=66.30 E-value=16 Score=19.19 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=25.4
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHh
Q 032081 25 DGKIAPSELGILMRSLGGNPTQAQLKSIIS 54 (147)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (147)
+-.+|.+|+...+..++-.++..++..+|.
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~ 36 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWN 36 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 345788899999999988899999888887
No 175
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=65.95 E-value=14 Score=19.56 Aligned_cols=26 Identities=8% Similarity=0.355 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHH
Q 032081 98 FVSVSDLRHILTSIGEKLEPSEFDEW 123 (147)
Q Consensus 98 ~I~~~e~~~~l~~~~~~~~~~~~~~~ 123 (147)
.|+.++|..+|+.....++.+++..+
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47889999999988877888887664
No 176
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=65.85 E-value=4.4 Score=26.93 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=38.2
Q ss_pred HhhhCC-CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 88 FKVLDK-DNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 88 f~~~D~-~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
|-.+|+ ..+|+++.-|+.-+- ....+-+..+..+|...|.|.+|.|+++||-.++
T Consensus 193 f~qld~~p~d~~~sh~el~pl~--ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLR--APLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCcccccccccccccc--CCcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 334454 578888888876331 1233345567789999999999999999987654
No 177
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=65.82 E-value=26 Score=22.18 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=31.2
Q ss_pred HHHHHHHHhcchhccCCCCccCHHHHHHHHHH----cCCCCCHHHHHHHHh
Q 032081 8 DQVSSMKEAFTLFDTDGDGKIAPSELGILMRS----LGGNPTQAQLKSIIS 54 (147)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~----~~~~~~~~~~~~~~~ 54 (147)
..+..+.......|..+.+++|.+++++++-. |+-.+|-++...-+.
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~Ee~Lrql~ 116 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLEEQLRQLQ 116 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34556666667788888888999999887643 455555555444444
No 178
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=62.74 E-value=22 Score=23.45 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=44.2
Q ss_pred HHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh------hcCCCCCcchHHHHHHHHhh
Q 032081 9 QVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS------EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~i~~~ef~~~~~~~ 74 (147)
..+..+++|..||+.+=-..+..++..++..-|+--....|..+.. .... ..=+|.+|+..+...
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~NA~~~l~l~~-e~Gsf~~flWsf~~~ 123 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLELQK-EFGSFSEFLWSFVGG 123 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHhcCC
Confidence 3456788999999988888888999998887776666666666555 1111 122577777665543
No 179
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=62.26 E-value=10 Score=22.85 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=19.2
Q ss_pred CCHHHHHHHHh--hcCCCCCcchHHHHHHHH
Q 032081 44 PTQAQLKSIIS--EEKLTAPFDFPRFLDLMA 72 (147)
Q Consensus 44 ~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~ 72 (147)
++.++++.+|. -.+..|++.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 45677778887 567789999999998766
No 180
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=61.86 E-value=32 Score=20.52 Aligned_cols=49 Identities=12% Similarity=0.344 Sum_probs=35.7
Q ss_pred HhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q 032081 88 FKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIA 142 (147)
Q Consensus 88 f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 142 (147)
+..+..-|. .|+.+.++.++...|..+.+..+..++.... .++++|.+.
T Consensus 7 ~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLe-----g~~idE~i~ 55 (109)
T COG2058 7 YLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALE-----GVDIDEVIK 55 (109)
T ss_pred HHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc-----CCCHHHHHH
Confidence 333443443 8999999999999999998888888877765 235666543
No 181
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=61.31 E-value=39 Score=21.30 Aligned_cols=78 Identities=9% Similarity=0.166 Sum_probs=45.7
Q ss_pred CCCcchHHHHHHHHhhc-------CCCChH----HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH--
Q 032081 59 TAPFDFPRFLDLMAKHM-------KPEPFD----RQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIR-- 125 (147)
Q Consensus 59 ~~~i~~~ef~~~~~~~~-------~~~~~~----~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~-- 125 (147)
...|++++|...+.... ...... .....+|..+ |...=+.+-.+++|..++++++..++.
T Consensus 46 Ge~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~Vs~~El~d~l~~g 118 (145)
T PF13623_consen 46 GEKISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITVSDDELQDMLNQG 118 (145)
T ss_pred CEEcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCccCHHHHHHHHhcC
Confidence 35689999987766443 111111 2334455433 444445555666788888888777761
Q ss_pred --------HhccCCCCceeHHHHHHH
Q 032081 126 --------EVDVGSDGKIKYEDFIAR 143 (147)
Q Consensus 126 --------~~d~~~~g~i~~~ef~~~ 143 (147)
.+-.+..|.++...+.++
T Consensus 119 ~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 119 TNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred CCchhhhccccCcccCCcCHHHHHhh
Confidence 122357888887777655
No 182
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=61.09 E-value=28 Score=20.01 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=7.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHHh
Q 032081 106 HILTSIGEKLEPSEFDEWIREV 127 (147)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~ 127 (147)
.+|+.-|..++.+++..++...
T Consensus 16 ~lLk~rGi~v~~~~L~~f~~~i 37 (90)
T PF02337_consen 16 HLLKERGIRVKKKDLINFLSFI 37 (90)
T ss_dssp HHHHCCT----HHHHHHHHHHH
T ss_pred HHHHHcCeeecHHHHHHHHHHH
Confidence 3333334444444444444443
No 183
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=60.98 E-value=32 Score=20.21 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=23.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccC---CCCceeHHHHHH
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVG---SDGKIKYEDFIA 142 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~ 142 (147)
.+..-|..+-. +|.++.+.|-.+. |.+-+.+-..++|+...+. ..+.|+.+|+..
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~e 88 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKE 88 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHH
Confidence 34444555433 5566666666554 4333344444555554332 123455555433
No 184
>PLN02222 phosphoinositide phospholipase C 2
Probab=59.46 E-value=63 Score=25.52 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=33.7
Q ss_pred HHHHhcchhccCCCCccCHHHHHHHHHHcCC--CCCHHHHHHHHh---hcCCCCCcchHHHHHHHH
Q 032081 12 SMKEAFTLFDTDGDGKIAPSELGILMRSLGG--NPTQAQLKSIIS---EEKLTAPFDFPRFLDLMA 72 (147)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~---~~~~~~~i~~~ef~~~~~ 72 (147)
.+..+|..+.. ++.++.++|..+|..... ..+.+....++. .....+.++++.|..++.
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 34444555432 357788888777776432 235556666665 122345577777777764
No 185
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=58.59 E-value=5.8 Score=24.31 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=38.4
Q ss_pred CCCccCHHHHHHHHHHc--CCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcc
Q 032081 24 GDGKIAPSELGILMRSL--GGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFV 99 (147)
Q Consensus 24 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I 99 (147)
.||.++..|...+...+ ....+..+...+.. .......+++.+++..+............+..++.+.-.| |.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCC
Confidence 48899999987765544 22233333444433 1111225677777766554332222233566677776554 556
Q ss_pred cHHH
Q 032081 100 SVSD 103 (147)
Q Consensus 100 ~~~e 103 (147)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 5554
No 186
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=58.42 E-value=15 Score=19.15 Aligned_cols=43 Identities=9% Similarity=0.307 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh
Q 032081 5 LSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS 54 (147)
Q Consensus 5 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (147)
+++.....|+.+|.... ..+.++..++...|. .+..-+..++.
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~ 44 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLK 44 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHH
Confidence 56677888888888876 677899999888654 44444444444
No 187
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=57.24 E-value=18 Score=22.16 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=20.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTS 110 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 110 (147)
.+.+++..||+.++|.|+.-.++-++-.
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 4667889999999999999988877643
No 188
>PRK01844 hypothetical protein; Provisional
Probab=56.43 E-value=32 Score=18.86 Aligned_cols=35 Identities=9% Similarity=0.282 Sum_probs=30.0
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 94 DNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 94 ~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
..+-.|+.+.++..+...|.++++..+..+++.+.
T Consensus 34 k~NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 34 QKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred HHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 34568999999999999999999999999888773
No 189
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=55.93 E-value=40 Score=24.47 Aligned_cols=43 Identities=9% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 96 TGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 96 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
.|.||++|=...++........+.++.+++.++ ||-+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 577788877777766544455567777777776 4556776654
No 190
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=55.86 E-value=26 Score=17.59 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS 54 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (147)
.+|+..+..|...|.. +.+++..+...+...+| ++...|...|.
T Consensus 6 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHH
Confidence 5788899999988885 66788888888777676 56666666654
No 191
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=55.82 E-value=82 Score=23.38 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=40.4
Q ss_pred cCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc
Q 032081 56 EKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSI 111 (147)
Q Consensus 56 ~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 111 (147)
..++..++++++.-.+..... -...+....++...|.+|+|.....++.+.+...
T Consensus 69 ~~q~~~~~l~k~~~~~~~~~~-gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 69 RRQDDKMTLEKLVIAKATYEK-GTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred ccCCccchHHHHhhHHhhhcc-CcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 334557888887766553332 3344678888899999999999999988887664
No 192
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=55.72 E-value=34 Score=22.47 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=32.7
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCC----------HHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 93 KDNTGFVSVSDLRHILTSIGEKLE----------PSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 93 ~~~~g~I~~~e~~~~l~~~~~~~~----------~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
.||||.+++-=+..+|...|..+. .+...+.++....-..+ ++..|+.++
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~p~~~~~~~~~~~~~~r~~Y~~aL~~a~~~--d~~~~~~~~ 185 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYSPFTWGSGSLALVGDLRKEYIAALKAADRH--DYGPLLEFA 185 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCCCccccccchhhHHhhHHHHHHHHHHHhcc--ChHHHHHHh
Confidence 489999999888888888885322 23334555555443344 777777765
No 193
>PLN02230 phosphoinositide phospholipase C 4
Probab=55.67 E-value=67 Score=25.50 Aligned_cols=62 Identities=15% Similarity=0.328 Sum_probs=41.9
Q ss_pred HHHHHhcchhccCCCCccCHHHHHHHHHHcC-C--CCCHHHHHHHHh----h-----cCCCCCcchHHHHHHHHh
Q 032081 11 SSMKEAFTLFDTDGDGKIAPSELGILMRSLG-G--NPTQAQLKSIIS----E-----EKLTAPFDFPRFLDLMAK 73 (147)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~--~~~~~~~~~~~~----~-----~~~~~~i~~~ef~~~~~~ 73 (147)
..+..+|..+..++ +.++.++|..+|.... . ..+.+....++. . ..+.+.++++.|..++..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 45667777775444 7999999999998854 2 235555555554 1 112356999999988764
No 194
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=55.40 E-value=37 Score=19.30 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=40.6
Q ss_pred CccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcC--CCChHHHHHHHHhhh
Q 032081 26 GKIAPSELGILMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMK--PEPFDRQLRDAFKVL 91 (147)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~ 91 (147)
..||..||.+..+..+.+.+..+...++. ....-+-.+-++=..++..... .|.....+..+|..|
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 35889999999999999999999988888 3333344444444444443321 222334455555443
No 195
>PHA02943 hypothetical protein; Provisional
Probab=55.09 E-value=54 Score=21.02 Aligned_cols=92 Identities=15% Similarity=0.280 Sum_probs=62.3
Q ss_pred CCCCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh--hcC------CCCC-----cchHHH
Q 032081 1 MGKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS--EEK------LTAP-----FDFPRF 67 (147)
Q Consensus 1 ~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~--~~~------~~~~-----i~~~ef 67 (147)
|+..+|+....++.++...+ +.|..|..++...+. .+..++.-.+. ... .-|. ++-+.+
T Consensus 1 MPr~~sd~v~~R~~eILE~L---k~G~~TtseIAkaLG-----lS~~qa~~~LyvLErEG~VkrV~~G~~tyw~l~~day 72 (165)
T PHA02943 1 MPRGMSDTVHTRMIKTLRLL---ADGCKTTSRIANKLG-----VSHSMARNALYQLAKEGMVLKVEIGRAAIWCLDEDAY 72 (165)
T ss_pred CCcchhHHHHHHHHHHHHHH---hcCCccHHHHHHHHC-----CCHHHHHHHHHHHHHcCceEEEeecceEEEEEChHHH
Confidence 77888999999999999888 678888888877654 44445444444 111 1121 233444
Q ss_pred HHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 032081 68 LDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILT 109 (147)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~ 109 (147)
...+. +..+.+|+.+..+.-.+|+...+..+..
T Consensus 73 ~~~v~---------~~~Relwrlv~s~~~kfi~p~~l~~li~ 105 (165)
T PHA02943 73 TNLVF---------EIKRELWRLVCNSRLKFITPSRLLRLIA 105 (165)
T ss_pred HHHHH---------HHHHHHHHHHHhccccccChHHHHHHHH
Confidence 44422 5778888888888888999988887763
No 196
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=54.28 E-value=39 Score=19.20 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=43.3
Q ss_pred CCHHHHHHHHhhcCCCCCcc---hHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCC
Q 032081 44 PTQAQLKSIISEEKLTAPFD---FPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEK 114 (147)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~i~---~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~ 114 (147)
.+...+.++.+ ..+..+|+ |++....+..+.. +.++.+-......+.-+|+.+++..+++..|.+
T Consensus 14 i~k~~I~RLar-r~GvkRIS~d~y~e~~~~l~~~l~-----~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 14 ITKPAIRRLAR-RGGVKRISGGVYDEVRNVLKSYLE-----DVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred CCHHHHHHHHH-HcCcchhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 55666777775 22345666 5665555554432 455566666667888899999999999988753
No 197
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=54.21 E-value=49 Score=20.30 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=34.0
Q ss_pred HHHHHhhhCCCC--CCcccHHHHHHHHHhc--------CCCCC----------HHHHHHHHHHhccCCCCceeHHHHHHH
Q 032081 84 LRDAFKVLDKDN--TGFVSVSDLRHILTSI--------GEKLE----------PSEFDEWIREVDVGSDGKIKYEDFIAR 143 (147)
Q Consensus 84 ~~~~f~~~D~~~--~g~I~~~e~~~~l~~~--------~~~~~----------~~~~~~~~~~~d~~~~g~i~~~ef~~~ 143 (147)
+..+|+.+..++ +..|+..++..++... +.... +--+..++..||.++.|+|+.-.|...
T Consensus 43 v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kva 122 (127)
T PF09068_consen 43 VIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVA 122 (127)
T ss_dssp HHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHH
T ss_pred HHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHH
Confidence 444555444332 2457777777766554 11111 112456899999999999999888766
Q ss_pred Hh
Q 032081 144 MV 145 (147)
Q Consensus 144 l~ 145 (147)
+.
T Consensus 123 L~ 124 (127)
T PF09068_consen 123 LI 124 (127)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 198
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=53.49 E-value=47 Score=19.87 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=40.5
Q ss_pred HHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCcchHHHHHH
Q 032081 14 KEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDL 70 (147)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 70 (147)
...|-.++..++...+..+++++|.+.|.....+-+..++...+ |. +.++.+.-
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~--GK-~i~ElIA~ 57 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK--GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc--CC-CHHHHHHH
Confidence 34566677777778899999999999999999999998887332 22 56666554
No 199
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=53.18 E-value=38 Score=18.71 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=20.7
Q ss_pred CcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcc
Q 032081 61 PFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFV 99 (147)
Q Consensus 61 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I 99 (147)
..+|++|...+......+.....+..-+..+-+ +++.|
T Consensus 26 ~~~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q-~~esv 63 (96)
T PF03732_consen 26 FITWEEFKDAFRKRFFPPDRKEQARQELNSLRQ-GNESV 63 (96)
T ss_pred CCCHHHHHHHHHHHHhhhhccccchhhhhhhhc-cCCcH
Confidence 347777777776665554444444444444444 33433
No 200
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=53.01 E-value=47 Score=19.77 Aligned_cols=34 Identities=9% Similarity=0.335 Sum_probs=28.9
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 94 DNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 94 ~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
.|. .||.+.+..+|+..|..+.+..+..+...+.
T Consensus 13 ~g~-~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 13 AGK-EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred cCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 444 8999999999999999988888888887764
No 201
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=52.61 E-value=89 Score=23.73 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=36.2
Q ss_pred HHHHHHhcchhccCCCCccCHHHHHHHHHH-cCCCCCHHHHHHHHhhcCCCCCcchHHHH
Q 032081 10 VSSMKEAFTLFDTDGDGKIAPSELGILMRS-LGGNPTQAQLKSIISEEKLTAPFDFPRFL 68 (147)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~ 68 (147)
.++++.+-+.+|.|.+|.|+.+|=..+++. +.+.-+...-.+.|. ..+..|+.++.-
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH--~dD~~ItVedLW 124 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFH--GDDKHITVEDLW 124 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhcc--CCccceeHHHHH
Confidence 345566667888899999998888777775 554444444333443 234566666633
No 202
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=52.10 E-value=44 Score=20.18 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=41.9
Q ss_pred CCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCcee
Q 032081 57 KLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIK 136 (147)
Q Consensus 57 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 136 (147)
.+...++.+-=+..+..+...... ..+..-++.+...+...|+++.-.+++.=+. .+..-+..+|.++-=.+-
T Consensus 36 ~~qr~l~~e~Ai~~W~llf~~~~~-~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~~------~~~~dls~Yde~~AWP~l 108 (117)
T PF03556_consen 36 EGQRSLPLETAIAYWRLLFSGRFF-PLLDSWIEFLEEKYKKAISKDTWNQFLDFFK------TVDEDLSNYDEEGAWPSL 108 (117)
T ss_dssp TT-SSEEHHHHHHHHHHHTTTTSS-CCHHHHHHHHHHCT-SEEEHHHHHHHHHHHH------H-HCCHCC--TTSSS-HH
T ss_pred cccCCCCHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHcCCcCcChhHHHHHHHHHH------hcCccccCCCCCCCCcHH
Confidence 346677777777776666543311 2333333444445667788887776653211 112334445544433577
Q ss_pred HHHHHHHHh
Q 032081 137 YEDFIARMV 145 (147)
Q Consensus 137 ~~ef~~~l~ 145 (147)
++||++.++
T Consensus 109 iDeFVe~~r 117 (117)
T PF03556_consen 109 IDEFVEWLR 117 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 788887764
No 203
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.89 E-value=12 Score=33.01 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcC----CCCCHHHHHHHHh---hcCCCCCcchHHHHHHHHhh
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLG----GNPTQAQLKSIIS---EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~---~~~~~~~i~~~ef~~~~~~~ 74 (147)
.+++.+.+...++|..+|++..|+|...++..+++.+. +..+.+. ++.. ....+++|++.+-+..+...
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 46788899999999999999999999999999998753 2222222 3333 34467889998877666543
No 204
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=49.77 E-value=32 Score=16.85 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 101 VSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 101 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
.+|...+|..+| .+..++...+..... ...++.++.++..
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 357778888888 577788888888775 4456777777654
No 205
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.29 E-value=14 Score=32.55 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCC---HHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 81 DRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLE---PSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 81 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
-+...++|..+|++..|+|...++...++.+..++. +...+.+...+....+|.|++.+-+-+|.
T Consensus 1416 ~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1416 FEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred HHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHH
Confidence 467888999999999999999999999998732210 01113344445555667777777665553
No 206
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=48.59 E-value=72 Score=24.61 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=42.9
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHh---cc-----CCCCceeHHHHHHHHhc
Q 032081 87 AFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREV---DV-----GSDGKIKYEDFIARMVA 146 (147)
Q Consensus 87 ~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~l~~ 146 (147)
+|..+--...+.|+.--|..+|+++|+--++-.+..|++.+ +. .+-+.++.+-|.+++.+
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 56666434459999999999999999877776777766554 32 23346888889887643
No 207
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=48.59 E-value=40 Score=17.61 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhcchhccCCCCc----cCHHHHHHHHHHcCCC
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGK----IAPSELGILMRSLGGN 43 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~----i~~~e~~~~l~~~~~~ 43 (147)
.+|+++...|...|.. .|+ ++..+...+...+|+.
T Consensus 7 ~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 7 KFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCCC
Confidence 4688888888888876 566 7777888877777743
No 208
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=48.48 E-value=35 Score=17.00 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh
Q 032081 3 KDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS 54 (147)
Q Consensus 3 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (147)
..+++.....|...|.. +.+.+..+...+...+| ++...|...|.
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~ 49 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQ 49 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 35678888888888887 55888888888877777 66677777775
No 209
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=48.47 E-value=35 Score=25.86 Aligned_cols=65 Identities=6% Similarity=0.107 Sum_probs=39.5
Q ss_pred HHHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh------hcCCCCCcchHHHHHHHHhh
Q 032081 8 DQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS------EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~i~~~ef~~~~~~~ 74 (147)
++...+..+| .+-....+..+.+||...+......+ .+.+..++. .....+...++.-++++...
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L-~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~ 356 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPEL-LEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVALL 356 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchH-HHHHHHHhCCCcEEecCCChHHHHHHHHHHHHHHH
Confidence 4555667777 77766678899999999888554221 222232331 23335667777766665544
No 210
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=48.17 E-value=59 Score=21.34 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=25.5
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 93 KDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 93 ~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
.+.+|.+..+++.+.++.-+..++.+++.++...-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 467788888888887765455577777777766644
No 211
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=47.43 E-value=43 Score=20.98 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=23.5
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Q 032081 100 SVSDLRHILTSIGEKLEPSEFDEWIREVDV 129 (147)
Q Consensus 100 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 129 (147)
|.++++.+...+..++|++++..++..++.
T Consensus 28 T~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 28 TREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred cHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 677888777766777888888888888775
No 212
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=47.19 E-value=98 Score=21.71 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=55.3
Q ss_pred CCCccCHHHHHHHHHHc--CCCCCHHH---HHHHHhhcCCCCCcchHHHHHHHHhhcCCCChH-H-HHHHHHhhhCCCCC
Q 032081 24 GDGKIAPSELGILMRSL--GGNPTQAQ---LKSIISEEKLTAPFDFPRFLDLMAKHMKPEPFD-R-QLRDAFKVLDKDNT 96 (147)
Q Consensus 24 ~~g~i~~~e~~~~l~~~--~~~~~~~~---~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~-~-~~~~~f~~~D~~~~ 96 (147)
.||.++..|+. +...+ .+.++.+. +..+|+ ..+....++.+|+..+...+...... + .+..+|.+-= -|
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~-~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~--AD 143 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFR-EGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF--AD 143 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHH-HhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--hc
Confidence 48999999987 33332 23344554 667775 22334488999998887655332211 1 1244455442 34
Q ss_pred CcccHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 032081 97 GFVSVSDLRHILTSIG--EKLEPSEFDEWIRE 126 (147)
Q Consensus 97 g~I~~~e~~~~l~~~~--~~~~~~~~~~~~~~ 126 (147)
|.++..|- +++..+. ..++..++..+...
T Consensus 144 G~l~~~E~-~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 144 GSLHPNER-QVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred CCCCHHHH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 77888873 3333321 33677777666555
No 213
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=43.44 E-value=62 Score=18.38 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=19.8
Q ss_pred CCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 032081 59 TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILT 109 (147)
Q Consensus 59 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~ 109 (147)
+|.|+-+++-..... +...+.++.++... ...|....+-|..+|.
T Consensus 27 n~~it~E~y~~V~a~----~T~qdkmRkLld~v--~akG~~~k~~F~~iL~ 71 (85)
T cd08324 27 NDYFSTEDAEIVCAC----PTQPDKVRKILDLV--QSKGEEVSEYFLYLLQ 71 (85)
T ss_pred cCCccHHHHHHHHhC----CCCHHHHHHHHHHH--HhcCchHHHHHHHHHH
Confidence 345555554444331 22234555555553 2334444444444443
No 214
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=43.39 E-value=29 Score=15.65 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=10.3
Q ss_pred CCcccHHHHHHHHHh
Q 032081 96 TGFVSVSDLRHILTS 110 (147)
Q Consensus 96 ~g~I~~~e~~~~l~~ 110 (147)
.|.|+.+++..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 467777777776644
No 215
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=42.79 E-value=57 Score=17.74 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=22.5
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Q 032081 97 GFVSVSDLRHILTSIGEKLEPSEFDEWIREVDV 129 (147)
Q Consensus 97 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 129 (147)
..-+-+|+...|...|+..+...+..-+..+..
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~~ 50 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELGA 50 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT-
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcCc
Confidence 456889999999999999999988887777643
No 216
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=42.42 E-value=36 Score=18.63 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=2.6
Q ss_pred CHHHHHH
Q 032081 29 APSELGI 35 (147)
Q Consensus 29 ~~~e~~~ 35 (147)
|..|+..
T Consensus 55 S~sEm~a 61 (71)
T PF06569_consen 55 SPSEMQA 61 (71)
T ss_pred CHHHHHH
Confidence 3333333
No 217
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=41.81 E-value=77 Score=22.21 Aligned_cols=10 Identities=0% Similarity=-0.174 Sum_probs=4.6
Q ss_pred CCCcchHHHH
Q 032081 59 TAPFDFPRFL 68 (147)
Q Consensus 59 ~~~i~~~ef~ 68 (147)
+|+|+-.|..
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 4445544433
No 218
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=41.33 E-value=68 Score=18.24 Aligned_cols=25 Identities=16% Similarity=0.318 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHH
Q 032081 99 VSVSDLRHILTSIGEKLEPSEFDEW 123 (147)
Q Consensus 99 I~~~e~~~~l~~~~~~~~~~~~~~~ 123 (147)
|+.++++.+.+-....++++++..+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~ 25 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESF 25 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4566666666666666666665444
No 219
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=40.82 E-value=79 Score=20.97 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=57.7
Q ss_pred HHHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh------hcCCCCCcchHHHHHHHHhhcC------
Q 032081 9 QVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS------EEKLTAPFDFPRFLDLMAKHMK------ 76 (147)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~i~~~ef~~~~~~~~~------ 76 (147)
....++++|..||+..=-..+.+++..++..-++--....|..+.. +.... .-+|.+|+..+.....
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e-~gSf~~ylW~fv~~~p~~~~~~ 130 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQN-GEPFADFVWSFVNHQPQVTQAT 130 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHhhccCCCcccCCcc
Confidence 3456788999999887777788888888876665555555555554 11111 3378888766532110
Q ss_pred ----CCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC
Q 032081 77 ----PEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG 112 (147)
Q Consensus 77 ----~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~ 112 (147)
-|........+...+=+.|-.+++..-.-..|+..|
T Consensus 131 ~~~~~P~~t~~S~~lskdLKkrGFkFvGpt~~ysfmqA~G 170 (187)
T PRK10353 131 TLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACG 170 (187)
T ss_pred chhcCCCCCHHHHHHHHHHHHcCCcccCcHHHHHHHHHHC
Confidence 011112333344444344555555555555555555
No 220
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=40.63 E-value=72 Score=18.27 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=24.4
Q ss_pred CCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 032081 57 KLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTS 110 (147)
Q Consensus 57 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 110 (147)
..+|.|+-.|-..+-...............+...+........+..++...+..
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 11 KADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred hccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 347788887754443332222221223333334333222222555666666554
No 221
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=40.41 E-value=1.6e+02 Score=22.24 Aligned_cols=99 Identities=12% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHh-hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHH
Q 032081 42 GNPTQAQLKSIIS-EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEF 120 (147)
Q Consensus 42 ~~~~~~~~~~~~~-~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~ 120 (147)
+.++..+....|+ .......|.|..|...+.....-... -....+=..+|..++++|+.-||--+-+-+.. =..+
T Consensus 170 friTKadA~~FWr~~fg~k~ivPW~~F~q~L~~~Hpi~~g-leAmaLktTIDLtcnd~iS~FEFDvFTRLFqP---w~tl 245 (563)
T KOG1785|consen 170 FRITKADAAEFWRKHFGKKTIVPWKTFRQALHKVHPISSG-LEAMALKTTIDLTCNDFISNFEFDVFTRLFQP---WKTL 245 (563)
T ss_pred eeeccccHHHHHHHhcCCcccccHHHHHHHHHhcCCCcch-hHHHHhhceeccccccceeeehhhhHHHhhcc---HHHH
Confidence 5567778888888 55666789999999988765443333 34444556678899999998876533322210 0122
Q ss_pred HHHHHHhccCCCCc---eeHHHHHHHH
Q 032081 121 DEWIREVDVGSDGK---IKYEDFIARM 144 (147)
Q Consensus 121 ~~~~~~~d~~~~g~---i~~~ef~~~l 144 (147)
-.=++.....+.|+ ++|+|-.+-|
T Consensus 246 lkNWq~LavtHPGYmAFLTYDEVk~RL 272 (563)
T KOG1785|consen 246 LKNWQTLAVTHPGYMAFLTYDEVKARL 272 (563)
T ss_pred HHhhhhhhccCCceeEEeeHHHHHHHH
Confidence 23344455567776 5777765544
No 222
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=40.00 E-value=89 Score=19.16 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=8.3
Q ss_pred cccHHHHHHHHHhc
Q 032081 98 FVSVSDLRHILTSI 111 (147)
Q Consensus 98 ~I~~~e~~~~l~~~ 111 (147)
.+|..++..++.++
T Consensus 67 ~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 67 KLTRSQIDYLYNRV 80 (122)
T ss_pred hcCHHHHHHHHHHH
Confidence 56666666665554
No 223
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=39.52 E-value=70 Score=17.86 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=10.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 032081 82 RQLRDAFKVLDKDNTGFVSVSDLRHILT 109 (147)
Q Consensus 82 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~ 109 (147)
+.++.++..+. ..|.....-|.++|+
T Consensus 46 ~kar~Lld~l~--~kG~~A~~~F~~~L~ 71 (82)
T cd08330 46 EKMRKLFSFVR--SWGASCKDIFYQILR 71 (82)
T ss_pred HHHHHHHHHHH--ccCHHHHHHHHHHHH
Confidence 34444444432 234444444444443
No 224
>PHA02105 hypothetical protein
Probab=38.93 E-value=60 Score=16.91 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHhc---CCCCCHHHHHHHHHHhccCCCC--ceeHHHHHHHH
Q 032081 99 VSVSDLRHILTSI---GEKLEPSEFDEWIREVDVGSDG--KIKYEDFIARM 144 (147)
Q Consensus 99 I~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g--~i~~~ef~~~l 144 (147)
+++++++.++..- ..++..+.+..+-..+...+-. .++|+||-.+|
T Consensus 5 lt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 5 LTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred ecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 5667777766543 2334455555555555554433 46888876554
No 225
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=38.47 E-value=1.2e+02 Score=22.09 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=49.1
Q ss_pred cCCCCCHHHHHHHHh----hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCC
Q 032081 40 LGGNPTQAQLKSIIS----EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKL 115 (147)
Q Consensus 40 ~~~~~~~~~~~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~ 115 (147)
..+.+.++++..++. |.++.--+-=++|-..+... .+......+.-+-+.+..+=+|++-..|+..=++.
T Consensus 34 id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l-~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~----- 107 (357)
T PLN02508 34 INKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKI-QGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK----- 107 (357)
T ss_pred CCCchhHHHHHHHHHHHHhCccccccccChhhccchhhC-CHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc-----
Confidence 355666677777666 55555455555565544332 11111122333444556777888888888765533
Q ss_pred CHHHHHHHHHHhccCC
Q 032081 116 EPSEFDEWIREVDVGS 131 (147)
Q Consensus 116 ~~~~~~~~~~~~d~~~ 131 (147)
....+.++|..+.+|.
T Consensus 108 ~nP~lae~F~lMaRDE 123 (357)
T PLN02508 108 TNPVVAEIFTLMSRDE 123 (357)
T ss_pred CChHHHHHHHHhCchh
Confidence 2246777888877764
No 226
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=38.39 E-value=65 Score=18.32 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=33.7
Q ss_pred HHHHHHhhhCCCCCCcc-----cHHHHHHHHHhc-CCCCCHHHHHHHHHHhcc
Q 032081 83 QLRDAFKVLDKDNTGFV-----SVSDLRHILTSI-GEKLEPSEFDEWIREVDV 129 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I-----~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~ 129 (147)
..+.-|+..|++....| -.+.|++-.+.+ ...++.++++.++..|+.
T Consensus 24 l~~gGyEIVDK~~~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 24 LARGGYEIVDKNARREIFIDGSWAEMFREDVQALIASEPTQEEVDDFLGGYDA 76 (85)
T ss_pred hhcCCcEEeecCCCceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34456888888877766 345677766665 356888999999888774
No 227
>PRK00441 argR arginine repressor; Provisional
Probab=38.24 E-value=1e+02 Score=19.51 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcc----CCCCce
Q 032081 95 NTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDV----GSDGKI 135 (147)
Q Consensus 95 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~----~~~g~i 135 (147)
..+..+.+|+...|...|...+...+..-+..+.. +.+|..
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~~ 59 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGKY 59 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCCE
Confidence 45788999999999999999999988887776543 455653
No 228
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.75 E-value=77 Score=19.16 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=22.2
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 100 SVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 100 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
+..|++.++..-+..+++++++.+++..+
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 56788888888787788888888776654
No 229
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=36.94 E-value=91 Score=18.40 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q 032081 94 DNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIA 142 (147)
Q Consensus 94 ~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 142 (147)
+..-.||.+++..+++..|.......+..+.+.+. ..++++++.
T Consensus 13 d~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~-----gk~i~elIa 56 (103)
T cd05831 13 DDGIEITADNINALLKAAGVNVEPYWPGLFAKALE-----GKDIKDLLS 56 (103)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-----CCCHHHHhh
Confidence 34457999999999999998888777776666663 244555553
No 230
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=36.60 E-value=96 Score=18.56 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=22.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 105 RHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
..++.-+...++.++-+.+.+..+.-++|.|++..-+..|
T Consensus 56 ~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L 95 (117)
T PF08349_consen 56 QHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLL 95 (117)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 3334444445666666666666666666666666555544
No 231
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=35.31 E-value=34 Score=18.75 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=7.2
Q ss_pred CCcccHHHHHHHHHh
Q 032081 96 TGFVSVSDLRHILTS 110 (147)
Q Consensus 96 ~g~I~~~e~~~~l~~ 110 (147)
.|.+..+||..++..
T Consensus 28 ~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 28 SGKLRGEEINSLLEA 42 (75)
T ss_pred cCcccHHHHHHHHHH
Confidence 445555555544433
No 232
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=34.45 E-value=92 Score=17.71 Aligned_cols=27 Identities=11% Similarity=0.324 Sum_probs=18.6
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHH
Q 032081 98 FVSVSDLRHILTSIGEKLEPSEFDEWI 124 (147)
Q Consensus 98 ~I~~~e~~~~l~~~~~~~~~~~~~~~~ 124 (147)
.|+.++++.+.+-....++++++..+.
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~ 28 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFA 28 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 367777777777777777776665543
No 233
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=34.22 E-value=68 Score=16.11 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=21.7
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccC
Q 032081 95 NTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVG 130 (147)
Q Consensus 95 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 130 (147)
..|.|+..+|++.+ | .+-.-+-.+++.+|..
T Consensus 7 ~~~~itv~~~rd~l---g--~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 7 KNGEITVAEFRDLL---G--LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TTSSBEHHHHHHHH---T--S-HHHHHHHHHHHHHT
T ss_pred cCCcCcHHHHHHHH---C--ccHHHHHHHHHHHhcc
Confidence 36889999999887 3 3555566677777754
No 234
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=34.00 E-value=67 Score=17.97 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHH
Q 032081 103 DLRHILTSIGEKLEPSEFDEW 123 (147)
Q Consensus 103 e~~~~l~~~~~~~~~~~~~~~ 123 (147)
|+..+|+.+|..+++++..-+
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL 41 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 567788999999998886544
No 235
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=33.73 E-value=91 Score=20.13 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=34.2
Q ss_pred cchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 032081 62 FDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREV 127 (147)
Q Consensus 62 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 127 (147)
.....|+.-+.. .........+..++.++-.++...++..+|...| ..|..+|++++......+
T Consensus 66 ~~~r~~iv~~I~-~gklkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 66 LPHRPFIVKYIV-DGKLKTNLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp -TTHHHHHHHHH-TTS--SHHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred chhHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 444445443332 2222344677788888866665679999999887 347888999887755543
No 236
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=33.48 E-value=1.1e+02 Score=18.20 Aligned_cols=34 Identities=9% Similarity=0.318 Sum_probs=28.3
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 94 DNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 94 ~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
.|. .||.+.+..+|...|..+....+..+...+.
T Consensus 13 ~g~-~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 13 AGK-EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred cCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 444 8999999999999998888888877777774
No 237
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=33.36 E-value=66 Score=17.41 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=25.2
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhc----CCCCCHHHHHHHHHHh
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSI----GEKLEPSEFDEWIREV 127 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 127 (147)
.+..+...++..-.--+-..+++.++..+ |...+++-+..+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 44555555543333345666777777665 5656667777777654
No 238
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=33.30 E-value=58 Score=15.05 Aligned_cols=15 Identities=47% Similarity=0.408 Sum_probs=7.9
Q ss_pred cHHHHHHHHHhcCCC
Q 032081 100 SVSDLRHILTSIGEK 114 (147)
Q Consensus 100 ~~~e~~~~l~~~~~~ 114 (147)
+.++|+..|...|+.
T Consensus 5 s~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIP 19 (38)
T ss_pred CHHHHHHHHHHcCCC
Confidence 345555555555543
No 239
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=33.28 E-value=66 Score=21.13 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=38.2
Q ss_pred HHHHHHhcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh------hcCCCCCcchHHHHHHHH
Q 032081 10 VSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS------EEKLTAPFDFPRFLDLMA 72 (147)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~i~~~ef~~~~~ 72 (147)
...++++|..||++.=-..+.+++..++..-++--....+..+.. .... ..-+|.+|+..+.
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA~~~l~i~~-e~gsF~~ylw~f~ 115 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNARAILKIQE-EFGSFSDYLWSFV 115 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHHHHHHHHHH-TTS-HHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHhcC
Confidence 456788999999887667788888888776666666666666665 1111 2236777776654
No 240
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=33.27 E-value=1.5e+02 Score=19.96 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=8.7
Q ss_pred HHHHHHHHHcCCCC
Q 032081 31 SELGILMRSLGGNP 44 (147)
Q Consensus 31 ~e~~~~l~~~~~~~ 44 (147)
.+|...+.++|..+
T Consensus 61 ~~f~~~~~~lGvdp 74 (223)
T PF04157_consen 61 SQFQSMCASLGVDP 74 (223)
T ss_dssp HHHHHHHHHHT--C
T ss_pred HHHHHHHHHcCCCc
Confidence 47777777777654
No 241
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=33.22 E-value=1.8e+02 Score=20.74 Aligned_cols=112 Identities=8% Similarity=0.103 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHh-----hh-CCCCCCc
Q 032081 30 PSELGILMRSLG---GNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFK-----VL-DKDNTGF 98 (147)
Q Consensus 30 ~~e~~~~l~~~~---~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~-----~~-D~~~~g~ 98 (147)
..++..+|..+. ..-...++..++. ...+.....|..+..++...+. ..+..+|. .. .....+.
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl~-----~v~~e~~~~~p~~~~~~~~~~~~ 76 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKLE-----KVIDEFFESAPEESGPQNPNVEP 76 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH-----HHHHHHHhcCccccCCCCCCcch
Confidence 345566665542 2223345555555 3444445677766666654422 23333442 11 0122233
Q ss_pred ccHHHHHHHHHhc--CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 99 VSVSDLRHILTSI--GEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 99 I~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
...++++..+..+ +..-.+-.++.+...+--....+=++..|+++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~f~~~PfTiqRlcEl~~~P~~~y~~~~k~~~alek 126 (288)
T PF09184_consen 77 EDYEEMKERILELLDSFDEPPFTIQRLCELLLDPRKHYKTLDKFLRALEK 126 (288)
T ss_pred hhHHHHHHHHHHHHHhcCCCChhHHHHHHHHhChhhccccHHHHHHHHhe
Confidence 4555655444332 11112333444444433223335566677776653
No 242
>COG5562 Phage envelope protein [General function prediction only]
Probab=33.13 E-value=43 Score=20.87 Aligned_cols=47 Identities=11% Similarity=0.317 Sum_probs=26.7
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 96 TGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 96 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
+|.|...-.+.+..- ...... ..+.....++..|..||+||+..+.+
T Consensus 54 ~~~Il~~g~k~~~~V-~~~~n~---~~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 54 DGVILIKGVKKVVGV-AEVFNT---TLIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred CCEEEeeccccccce-ecccCH---HHHHHHHHHHhcCCccHHHHHHHHHh
Confidence 455665555544311 111222 33444455577889999999987754
No 243
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=32.67 E-value=71 Score=18.02 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=18.5
Q ss_pred chhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh
Q 032081 18 TLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS 54 (147)
Q Consensus 18 ~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (147)
..++.+.+|.++..-+.++=+--.+....+.+...+.
T Consensus 30 ~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~ 66 (82)
T cd08032 30 EQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALK 66 (82)
T ss_pred HHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHh
Confidence 3455556777776666554332233334444444443
No 244
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.64 E-value=1.3e+02 Score=19.02 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=59.7
Q ss_pred HHHHHHHhcchhccCCCCccCHHHHHH---HHHHcCCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhhcCCCChHHH
Q 032081 9 QVSSMKEAFTLFDTDGDGKIAPSELGI---LMRSLGGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKHMKPEPFDRQ 83 (147)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~---~l~~~~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 83 (147)
.+..-.-+|+... .||.++..|... +++. .+..+..++..++. ..-+...+++-.|...+...+....-.+.
T Consensus 28 ~lAa~~Llf~Vm~--ADG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~el 104 (148)
T COG4103 28 RLAAAALLFHVME--ADGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLEL 104 (148)
T ss_pred HHHHHHHHHHHHh--cccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3333335677665 457778777544 3333 34567777777777 34445678889999888866654434455
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHH
Q 032081 84 LRDAFKVLDKDNTGFVSVSDLRHILT 109 (147)
Q Consensus 84 ~~~~f~~~D~~~~g~I~~~e~~~~l~ 109 (147)
+..+|+.. .-+|.++..|-.-+.+
T Consensus 105 i~~mweIa--~ADg~l~e~Ed~vi~R 128 (148)
T COG4103 105 IGLMWEIA--YADGELDESEDHVIWR 128 (148)
T ss_pred HHHHHHHH--HccccccHHHHHHHHH
Confidence 66677775 4557777777544443
No 245
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=32.10 E-value=1.6e+02 Score=19.77 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=26.3
Q ss_pred CCCCccCHHHHHHHHHH-cCCCCCHHHHHHHHhhcCCCCCcchHHHHHHHHhhcC
Q 032081 23 DGDGKIAPSELGILMRS-LGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMK 76 (147)
Q Consensus 23 ~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 76 (147)
|-+|+||.++....+.. ++. .+...+. +.-.++++++.+...-+..+.+
T Consensus 9 DFDGTITl~Ds~~~itdtf~~----~e~k~l~-~~vls~tiS~rd~~g~mf~~i~ 58 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGP----GEWKALK-DGVLSKTISFRDGFGRMFGSIH 58 (220)
T ss_pred cCCCceEecchhHHHHhccCc----hHHHHHH-HHHhhCceeHHHHHHHHHHhcC
Confidence 34677777777776654 332 1222333 3444667777775554444433
No 246
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=32.10 E-value=1e+02 Score=17.56 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=36.0
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHH
Q 032081 95 NTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIAR 143 (147)
Q Consensus 95 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 143 (147)
.+-.|.=.+|+..|...-......+...+=..+|...+++||-=||--.
T Consensus 19 ~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvF 67 (85)
T PF02761_consen 19 KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVF 67 (85)
T ss_dssp T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHH
T ss_pred CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHH
Confidence 3456899999999988754445566678888899999999998887544
No 247
>PLN00035 histone H4; Provisional
Probab=32.09 E-value=1.1e+02 Score=18.08 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=42.1
Q ss_pred CCHHHHHHHHhhcCCCCCcc---hHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCC
Q 032081 44 PTQAQLKSIISEEKLTAPFD---FPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGE 113 (147)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~i~---~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~ 113 (147)
.|...+.++.+ ..+..+|+ |++....+..+. .+.++.+..+....+.-+|+.+++..+++..|.
T Consensus 30 ipk~~IrRLAR-r~GvkRIS~~ay~elr~vle~~l-----~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~ 96 (103)
T PLN00035 30 ITKPAIRRLAR-RGGVKRISGLIYEETRGVLKIFL-----ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred CCHHHHHHHHH-HcCcccchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC
Confidence 67777888886 22244555 444444444332 245666666667788899999999999988875
No 248
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=31.75 E-value=46 Score=19.53 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=6.8
Q ss_pred ccHHHHHHHHHhcC
Q 032081 99 VSVSDLRHILTSIG 112 (147)
Q Consensus 99 I~~~e~~~~l~~~~ 112 (147)
++.+|+..++..+|
T Consensus 36 ~s~~eL~~~l~~~g 49 (105)
T cd03035 36 LDAATLERWLAKVG 49 (105)
T ss_pred CCHHHHHHHHHHhC
Confidence 45555555554443
No 249
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=30.93 E-value=58 Score=14.37 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=9.7
Q ss_pred CCcccHHHHHHHH
Q 032081 96 TGFVSVSDLRHIL 108 (147)
Q Consensus 96 ~g~I~~~e~~~~l 108 (147)
.|.||.+||.+.-
T Consensus 14 ~G~IseeEy~~~k 26 (31)
T PF09851_consen 14 KGEISEEEYEQKK 26 (31)
T ss_pred cCCCCHHHHHHHH
Confidence 5888888887654
No 250
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=30.70 E-value=1.7e+02 Score=19.57 Aligned_cols=64 Identities=9% Similarity=0.137 Sum_probs=29.3
Q ss_pred HHHHHHHHhcchhccCCCCccCHHHHHHHHHHcC-CCCCHHHHHHHHh-hcCCCCCcchHHHHHHH
Q 032081 8 DQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLG-GNPTQAQLKSIIS-EEKLTAPFDFPRFLDLM 71 (147)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~i~~~ef~~~~ 71 (147)
+++..+.+....+++.+.+.-..+++.+.|.+-+ +..++.-...+-. +.....+-.++.|.+.+
T Consensus 119 ~rl~~iL~~It~y~P~~~~f~vseNIVk~LNK~~~i~lp~~LA~~L~~i~tgk~~~~e~~~f~d~f 184 (194)
T PF07199_consen 119 KRLSKILKHITNYDPKNPIFAVSENIVKKLNKKGTIELPEDLAQQLCQIDTGKMRGYEWEVFTDCF 184 (194)
T ss_pred HHHHHHHHHHHccCCCCcchhhHHHHHHHHcCCCCccchHHHHHHHhccccCccccchHHHHHHHH
Confidence 3344444444455555555555555655555533 3333333333333 33333444444444443
No 251
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=30.68 E-value=63 Score=14.66 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=12.1
Q ss_pred cccHHHHHHHHHhcCCCC
Q 032081 98 FVSVSDLRHILTSIGEKL 115 (147)
Q Consensus 98 ~I~~~e~~~~l~~~~~~~ 115 (147)
.++..|++..|+..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 356778888888877544
No 252
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=30.51 E-value=23 Score=18.61 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=12.0
Q ss_pred chhccCCCCccCHHHHHH
Q 032081 18 TLFDTDGDGKIAPSELGI 35 (147)
Q Consensus 18 ~~~d~~~~g~i~~~e~~~ 35 (147)
..++.+++|.|+...+.+
T Consensus 22 ~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 22 SQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHCTTTTTBEEHHHHTT
T ss_pred HHHHhcCCCcEeHHHHHc
Confidence 455666678887777655
No 253
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=29.99 E-value=1.4e+02 Score=19.07 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhcchhccCCCCccCHHHHHHHHH
Q 032081 4 DLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMR 38 (147)
Q Consensus 4 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~ 38 (147)
.++......|+.+|.... ..|.+...++...|.
T Consensus 3 ~~s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L~ 35 (154)
T COG1321 3 MLSETEEDYLETIYELLE--EKGFARTKDIAERLK 35 (154)
T ss_pred ccchHHHHHHHHHHHHHh--ccCcccHHHHHHHhC
Confidence 467778888888887776 688999999888654
No 254
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=29.98 E-value=2e+02 Score=20.85 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=47.2
Q ss_pred HcCCCCCHHHHHHHHh----hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCC
Q 032081 39 SLGGNPTQAQLKSIIS----EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEK 114 (147)
Q Consensus 39 ~~~~~~~~~~~~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~ 114 (147)
.+.+.+.+++++.++. |.+..--+-=++|-..... +.+......+.-+-+.+..+=+|++-..|+..=++.-
T Consensus 17 ~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~-~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~--- 92 (323)
T cd01047 17 ALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADK-IDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT--- 92 (323)
T ss_pred hcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhh-CCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC---
Confidence 4566666667666666 5555444444555554332 1111111223334445566677888888877665432
Q ss_pred CCHHHHHHHHHHhccCC
Q 032081 115 LEPSEFDEWIREVDVGS 131 (147)
Q Consensus 115 ~~~~~~~~~~~~~d~~~ 131 (147)
...+.++|..+.+|.
T Consensus 93 --nP~lae~F~lMaRDE 107 (323)
T cd01047 93 --NPVVAELFRLMARDE 107 (323)
T ss_pred --CcHHHHHHHHHhhhH
Confidence 235667777776663
No 255
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=29.87 E-value=1.6e+02 Score=19.24 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=29.2
Q ss_pred hCCCCCCcccHHHHHHHHHhcC--CCCCHHHHHHHHHHhcc
Q 032081 91 LDKDNTGFVSVSDLRHILTSIG--EKLEPSEFDEWIREVDV 129 (147)
Q Consensus 91 ~D~~~~g~I~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~ 129 (147)
+.++....+|.++|.+.++... ..++.+.+..+++.+..
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~ 182 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKN 182 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 4445567789999999888763 47888888888887654
No 256
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=29.38 E-value=1.5e+02 Score=21.61 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=49.0
Q ss_pred HHcCCCCCHHHHHHHHh----hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCC
Q 032081 38 RSLGGNPTQAQLKSIIS----EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGE 113 (147)
Q Consensus 38 ~~~~~~~~~~~~~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~ 113 (147)
..+.+.+.+++++.++. |.+..--+-=++|-...... .+......+.-+-+.+..+=+|++-..|+..=++.
T Consensus 26 ~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l-~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~--- 101 (337)
T TIGR02029 26 ANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHI-DGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN--- 101 (337)
T ss_pred HhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhC-CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC---
Confidence 34666777777777776 55555445555555544321 11111122333344556667788888887765533
Q ss_pred CCCHHHHHHHHHHhccCC
Q 032081 114 KLEPSEFDEWIREVDVGS 131 (147)
Q Consensus 114 ~~~~~~~~~~~~~~d~~~ 131 (147)
....+.++|..+.+|.
T Consensus 102 --~~P~lae~F~~MaRDE 117 (337)
T TIGR02029 102 --RDPVVAELFQLMARDE 117 (337)
T ss_pred --CChHHHHHHHHHhhhh
Confidence 2334677777777663
No 257
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=29.18 E-value=1.4e+02 Score=23.15 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=38.9
Q ss_pred hcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh-----hc-----CCCCCcchHHHHHHHH
Q 032081 16 AFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS-----EE-----KLTAPFDFPRFLDLMA 72 (147)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~-----~~-----~~~~~i~~~ef~~~~~ 72 (147)
+|..+....++.+++..|-++|+++|+.-+..-+...+. +. .....++-+.|..++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 566676566789999999999999998877666666665 21 1234566666665543
No 258
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=28.99 E-value=1.3e+02 Score=19.33 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=26.1
Q ss_pred ccCHHHHHHHHHHc----CCCCCHHHHHHHHh--hcCCCCCcchHHHHHHHHhh
Q 032081 27 KIAPSELGILMRSL----GGNPTQAQLKSIIS--EEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 27 ~i~~~e~~~~l~~~----~~~~~~~~~~~~~~--~~~~~~~i~~~ef~~~~~~~ 74 (147)
.++-.++.+++..- |-.++.-+....|. ...+.+.++|++|...+..+
T Consensus 33 em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 33 EMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEEL 86 (180)
T ss_pred ccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHH
Confidence 35555666665542 34455555555554 33344567777776655433
No 259
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=28.94 E-value=61 Score=14.43 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=5.7
Q ss_pred ccHHHHHHHHH
Q 032081 99 VSVSDLRHILT 109 (147)
Q Consensus 99 I~~~e~~~~l~ 109 (147)
|+.+|++.+|.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 66666666654
No 260
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=28.86 E-value=1.1e+02 Score=16.95 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhccC-CCCceeHHHHHHHH
Q 032081 101 VSDLRHILTSIGEKLEPSEFDEWIREVDVG-SDGKIKYEDFIARM 144 (147)
Q Consensus 101 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~l 144 (147)
.+++...|. |...+.+.+.+.+...+.+ --|.++.+||+++|
T Consensus 44 i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 455555552 4556777788777777554 33467777777664
No 261
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=28.83 E-value=3.4e+02 Score=22.58 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=28.3
Q ss_pred hcchhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh
Q 032081 16 AFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS 54 (147)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (147)
.++.||+..+|.|..-.|+-.+..+...+.++.+..+|.
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~ 513 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFK 513 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHH
Confidence 456777777787777777777777766667777777776
No 262
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=28.34 E-value=1e+02 Score=16.24 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=4.9
Q ss_pred cccHHHHHHHHHhc
Q 032081 98 FVSVSDLRHILTSI 111 (147)
Q Consensus 98 ~I~~~e~~~~l~~~ 111 (147)
.++.+|...++..+
T Consensus 14 ~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 14 DLSREEAKAAFDAI 27 (66)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 34444444444443
No 263
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=27.92 E-value=1.4e+02 Score=17.80 Aligned_cols=40 Identities=10% Similarity=0.341 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q 032081 98 FVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIA 142 (147)
Q Consensus 98 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 142 (147)
.||.+.+..+|...|....+..+..+...+.. .+.++.+.
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~g-----kdIeElIa 55 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALEE-----VNIDEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 89999999999999988888888887777742 44555553
No 264
>PF14164 YqzH: YqzH-like protein
Probab=27.88 E-value=1.1e+02 Score=16.44 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=19.3
Q ss_pred HHHhcchhccC-CCCccCHHHHHHHHHH
Q 032081 13 MKEAFTLFDTD-GDGKIAPSELGILMRS 39 (147)
Q Consensus 13 l~~~f~~~d~~-~~g~i~~~e~~~~l~~ 39 (147)
+.++|+.+..| ..-.++..|++.+...
T Consensus 10 i~~~l~QYg~d~~~~pls~~E~~~L~~~ 37 (64)
T PF14164_consen 10 IINCLRQYGYDVECMPLSDEEWEELCKH 37 (64)
T ss_pred HHHHHHHhCCcccCCCCCHHHHHHHHHH
Confidence 57778888766 5667787887776654
No 265
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=27.86 E-value=1.9e+02 Score=23.64 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=42.5
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 144 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 144 (147)
..+.+|...-+.+.-.|..+.+... +.+++.+..+..++...++.|+++.|.+..
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~i 459 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWI 459 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHH
Confidence 5667888888787777877777655 467888888888888777779999887654
No 266
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=27.80 E-value=95 Score=15.79 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=17.3
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHH
Q 032081 95 NTGFVSVSDLRHILTSIGEKLEPSEFDEWI 124 (147)
Q Consensus 95 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 124 (147)
..|.|+.+||..=+.......+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 457777777776665554444545554443
No 267
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=27.79 E-value=1.8e+02 Score=21.25 Aligned_cols=89 Identities=9% Similarity=0.030 Sum_probs=51.9
Q ss_pred HHHcCCCCCHHHHHHHHh----hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC
Q 032081 37 MRSLGGNPTQAQLKSIIS----EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG 112 (147)
Q Consensus 37 l~~~~~~~~~~~~~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~ 112 (147)
+..+.+.+.++++..++. |.+..--+-=++|-..+... .+......+.-+-+.+..+=+|++-..|+..=++.-
T Consensus 31 m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l-~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~- 108 (351)
T CHL00185 31 MANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNL-DEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK- 108 (351)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhC-CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC-
Confidence 344677777777777777 66655555556665544322 111111223334455566778888888887666432
Q ss_pred CCCCHHHHHHHHHHhccCC
Q 032081 113 EKLEPSEFDEWIREVDVGS 131 (147)
Q Consensus 113 ~~~~~~~~~~~~~~~d~~~ 131 (147)
...+.++|..+.+|.
T Consensus 109 ----nP~lae~F~lMaRDE 123 (351)
T CHL00185 109 ----NPLLAEGFLLMSRDE 123 (351)
T ss_pred ----CcHHHHHHHHHhhhh
Confidence 235677777777664
No 268
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.70 E-value=1.1e+02 Score=22.96 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=38.6
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHH
Q 032081 85 RDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFI 141 (147)
Q Consensus 85 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 141 (147)
..+|..+. .-+|.|+-..-+.-+-. .+++...+-.++...|.+.+|-++-+||.
T Consensus 447 de~fy~l~-p~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 447 DEIFYTLS-PVNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred Hhhhhccc-ccCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 34565553 44677776655544433 34667788899999999999999999986
No 269
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=27.63 E-value=1e+02 Score=17.16 Aligned_cols=36 Identities=3% Similarity=0.012 Sum_probs=20.1
Q ss_pred hhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh
Q 032081 19 LFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIS 54 (147)
Q Consensus 19 ~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (147)
.+..+.+|.|+..-+.++=+--.+..+.+.+.+.+.
T Consensus 26 ~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~ 61 (77)
T cd08033 26 HVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALR 61 (77)
T ss_pred HhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHH
Confidence 344566777777776664333334445555555554
No 270
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=27.48 E-value=72 Score=14.33 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=12.1
Q ss_pred ccCHHHHHHHHHHcCCCC
Q 032081 27 KIAPSELGILMRSLGGNP 44 (147)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~ 44 (147)
.++..+++..+...|++.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 456677777777766554
No 271
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=27.48 E-value=1.3e+02 Score=17.98 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=5.5
Q ss_pred eeHHHHHHHHh
Q 032081 135 IKYEDFIARMV 145 (147)
Q Consensus 135 i~~~ef~~~l~ 145 (147)
++|++|..-++
T Consensus 99 ~s~~~~r~~ir 109 (118)
T PF09312_consen 99 ISYEEYREQIR 109 (118)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666666554
No 272
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.26 E-value=2e+02 Score=19.25 Aligned_cols=38 Identities=11% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 032081 87 AFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREV 127 (147)
Q Consensus 87 ~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 127 (147)
+-..|.+|..|.|+...+..+.+- ...++.+.+.++.+
T Consensus 124 V~~af~~dk~G~l~~~rIl~Lrrl---~i~D~~w~~am~aI 161 (195)
T PF11363_consen 124 VNRAFQVDKEGNLNTSRILGLRRL---EIDDERWQEAMDAI 161 (195)
T ss_pred HHHHHhcCCCCCcCHHHHHHHHhc---cCCCHHHHHHHHHH
Confidence 344455667777776665544322 24455555554444
No 273
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=26.92 E-value=1.3e+02 Score=17.18 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=40.9
Q ss_pred CCccCHHHHHHHHHHcC----C-CCCHHHHHHHHh-hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCc
Q 032081 25 DGKIAPSELGILMRSLG----G-NPTQAQLKSIIS-EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGF 98 (147)
Q Consensus 25 ~g~i~~~e~~~~l~~~~----~-~~~~~~~~~~~~-~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 98 (147)
||.++..|...+...+. + ......+..++. ....-...+..++...+.....+......+..++..... +|.
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--DG~ 93 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALLRPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--DGE 93 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--cCC
Confidence 78888888877665442 2 234566666665 110001344566666666554422223345556666543 456
Q ss_pred ccHHH
Q 032081 99 VSVSD 103 (147)
Q Consensus 99 I~~~e 103 (147)
++..|
T Consensus 94 ~~~~E 98 (111)
T cd07176 94 VDPEE 98 (111)
T ss_pred CCHHH
Confidence 66665
No 274
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=26.65 E-value=2.6e+02 Score=20.52 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=17.4
Q ss_pred ccCCCCccCHHHHHHHHHHcCCCC
Q 032081 21 DTDGDGKIAPSELGILMRSLGGNP 44 (147)
Q Consensus 21 d~~~~g~i~~~e~~~~l~~~~~~~ 44 (147)
+.+..+.++..+...+|..++++.
T Consensus 135 ~~~~~~~lp~~eR~~lLe~lg~~~ 158 (342)
T cd07894 135 KKNTGRPLPVEERRELLEKYGLPT 158 (342)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCCC
Confidence 344456788999999898887543
No 275
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.11 E-value=1.7e+02 Score=18.23 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHh--hcC---CCCCcchHHHHHHHHhhcCCCCh----------------HHHHHHHHh
Q 032081 31 SELGILMRSLGGNPTQAQLKSIIS--EEK---LTAPFDFPRFLDLMAKHMKPEPF----------------DRQLRDAFK 89 (147)
Q Consensus 31 ~e~~~~l~~~~~~~~~~~~~~~~~--~~~---~~~~i~~~ef~~~~~~~~~~~~~----------------~~~~~~~f~ 89 (147)
..+..++...+...+.+++...+. +.. ..-.+....|+..+...-..++. ...++-+|.
T Consensus 19 n~lv~i~~~~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~p~ve~~inNNivLkKLRiAf~ 98 (155)
T COG4807 19 NDLVRILALGNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPAPEVERRINNNIVLKKLRIAFS 98 (155)
T ss_pred hHHHHHHHhcCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCCCcceeeecchhhHHhHhHhhh
Confidence 567777777788888888888887 221 22334455555554433222111 234556665
Q ss_pred hhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Q 032081 90 VLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDV 129 (147)
Q Consensus 90 ~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 129 (147)
.= ..++..++...+..++.-++..+|..-|.
T Consensus 99 lK---------~~Dm~~I~~~~~f~vS~pElsAlfR~~~h 129 (155)
T COG4807 99 LK---------TDDMLAILTEQQFRVSMPELSALFRAPDH 129 (155)
T ss_pred cc---------cchHHHHHhccCcccccHHHHHHHhCCCc
Confidence 42 24577888887888888888888877553
No 276
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=26.07 E-value=1.1e+02 Score=16.01 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHH
Q 032081 99 VSVSDLRHILTSIGEKLEPSEFDEW 123 (147)
Q Consensus 99 I~~~e~~~~l~~~~~~~~~~~~~~~ 123 (147)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3478888888899999998888653
No 277
>PRK04280 arginine repressor; Provisional
Probab=25.99 E-value=1.5e+02 Score=18.78 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=28.4
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcc----CCCCc
Q 032081 97 GFVSVSDLRHILTSIGEKLEPSEFDEWIREVDV----GSDGK 134 (147)
Q Consensus 97 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~----~~~g~ 134 (147)
..=+-+|+.+.|+..|...|...+..-+..+.. +++|.
T Consensus 17 ~I~tQeeL~~~L~~~Gi~vTQATiSRDikeL~lvKv~~~~G~ 58 (148)
T PRK04280 17 EIETQDELVDRLREEGFNVTQATVSRDIKELHLVKVPLPDGR 58 (148)
T ss_pred CCCCHHHHHHHHHHcCCCeehHHHHHHHHHcCCEEeecCCCc
Confidence 344778999999999999999888776666542 45554
No 278
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=25.89 E-value=1.9e+02 Score=19.85 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=32.7
Q ss_pred HhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 032081 88 FKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREV 127 (147)
Q Consensus 88 f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 127 (147)
+...--++.|.+....+...+.++...++..++..+-+..
T Consensus 157 ~~i~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 157 HDIIVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred EEEEecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 3344458999999999999999999999999888775544
No 279
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=25.89 E-value=1.3e+02 Score=17.44 Aligned_cols=18 Identities=6% Similarity=0.193 Sum_probs=10.8
Q ss_pred CCCcchHHHHHHHHhhcC
Q 032081 59 TAPFDFPRFLDLMAKHMK 76 (147)
Q Consensus 59 ~~~i~~~ef~~~~~~~~~ 76 (147)
++.|+.+||..-+.....
T Consensus 37 ~~~i~~EeF~~~Lq~~ln 54 (92)
T smart00549 37 NGTITAEEFTSRLQEALN 54 (92)
T ss_pred hCCCCHHHHHHHHHHHHc
Confidence 456777777666555443
No 280
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=25.77 E-value=1.3e+02 Score=22.10 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHhc
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 146 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 146 (147)
.+......+|..|.|.++.--.+-++......--...++.+|.... +.+|.+.+-.|..++..
T Consensus 111 llaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 111 LLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH
No 281
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=25.72 E-value=2.1e+02 Score=22.47 Aligned_cols=49 Identities=14% Similarity=0.344 Sum_probs=37.5
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCC
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGS 131 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 131 (147)
.++.+--.++..|.|.++.+|..++|......-.+-++.++++....|.
T Consensus 456 I~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~nd 504 (548)
T PF02459_consen 456 ISRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALND 504 (548)
T ss_pred HHHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcch
Confidence 4555666678889999999999999999876656667777777766553
No 282
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=25.62 E-value=34 Score=19.03 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=19.7
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHh
Q 032081 24 GDGKIAPSELGILMRSLGGNPTQAQLKSIIS 54 (147)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (147)
.+|.-+..+|-++|..+|-...+..+.-+++
T Consensus 37 dS~k~~~p~fPkFLn~LGteIiEnAVefiLr 67 (88)
T PF15144_consen 37 DSGKNPEPDFPKFLNLLGTEIIENAVEFILR 67 (88)
T ss_pred ccCCCCCCchHHHHHHhhHHHHHHHHHHHHH
Confidence 3555555577777777776666666666665
No 283
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=25.54 E-value=44 Score=26.74 Aligned_cols=63 Identities=14% Similarity=0.344 Sum_probs=45.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHH---------HHHHHHHhccCCC---------------------
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSE---------FDEWIREVDVGSD--------------------- 132 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~---------~~~~~~~~d~~~~--------------------- 132 (147)
...+++..+|.+-++..+..++.....+++..+..-. ...++...|.+++
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~ 517 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKK 517 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccc
Confidence 3456788889999999999988888777754332211 3457777788877
Q ss_pred --CceeHHHHHHHHh
Q 032081 133 --GKIKYEDFIARMV 145 (147)
Q Consensus 133 --g~i~~~ef~~~l~ 145 (147)
|.++.+|...++.
T Consensus 518 s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 518 SFGVVTVDELVALLA 532 (975)
T ss_pred ccCeeEHHHHHHHHH
Confidence 8889888887765
No 284
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=25.41 E-value=1.4e+02 Score=16.98 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHH
Q 032081 61 PFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEW 123 (147)
Q Consensus 61 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~ 123 (147)
.+++.+++.. .+...++....=..+-+.+ +=|+.+..+|..-|..++ ++.+++.+.
T Consensus 30 ~it~~dL~~~--GL~g~~~s~~rR~~l~~~L---~iGy~N~KqllkrLN~f~--it~~e~~~a 85 (87)
T PF13331_consen 30 EITWEDLIEL--GLIGGPDSKERREKLGEYL---GIGYGNAKQLLKRLNMFG--ITREEFEEA 85 (87)
T ss_pred cCCHHHHHHC--CCCCCccHHHHHHHHHHHH---CCCCCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 4778776654 1222222222222233333 447888888888887777 466665554
No 285
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=25.29 E-value=58 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHhcchhccCC
Q 032081 3 KDLSDDQVSSMKEAFTLFDTDG 24 (147)
Q Consensus 3 ~~~~~~~~~~l~~~f~~~d~~~ 24 (147)
+.+|+++++.|......+|+++
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCc
Confidence 4678888888888877787764
No 286
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=25.25 E-value=1.1e+02 Score=15.71 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=7.7
Q ss_pred HHHhcCCCCCHHHHHHHHHH
Q 032081 107 ILTSIGEKLEPSEFDEWIRE 126 (147)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~ 126 (147)
.++.+| ++-+++..++..
T Consensus 9 ~~r~lG--fsL~eI~~~l~l 26 (65)
T PF09278_consen 9 RLRELG--FSLEEIRELLEL 26 (65)
T ss_dssp HHHHTT----HHHHHHHHHH
T ss_pred HHHHcC--CCHHHHHHHHhc
Confidence 344444 444555555544
No 287
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=25.13 E-value=1.2e+02 Score=15.98 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=6.5
Q ss_pred ccHHHHHHHHHhcCC
Q 032081 99 VSVSDLRHILTSIGE 113 (147)
Q Consensus 99 I~~~e~~~~l~~~~~ 113 (147)
|..++|...|+..|.
T Consensus 25 I~L~el~~~L~~~g~ 39 (64)
T PF09494_consen 25 INLEELHAWLKASGI 39 (64)
T ss_pred ccHHHHHHHHHHcCC
Confidence 444444444443333
No 288
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=25.08 E-value=1.9e+02 Score=19.89 Aligned_cols=46 Identities=9% Similarity=0.208 Sum_probs=32.5
Q ss_pred cHHHHHHHH----HhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 100 SVSDLRHIL----TSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 100 ~~~e~~~~l----~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
+.++++.+. ...+..++++++..+...+..=.+-.+++.+|..-|.
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~ 222 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLN 222 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666666554 4447778888888888887765666677787776654
No 289
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=25.03 E-value=2.1e+02 Score=18.88 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=28.0
Q ss_pred CCCCccCHHHHHHHHHHcCCCCCHHHHHHHHh-----hcCCCCCcchHHHHHHHHhhc
Q 032081 23 DGDGKIAPSELGILMRSLGGNPTQAQLKSIIS-----EEKLTAPFDFPRFLDLMAKHM 75 (147)
Q Consensus 23 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~ef~~~~~~~~ 75 (147)
|.+|+++ .....+...++ .+.+++..++. ++.+-|-=++.|.+.+-....
T Consensus 46 D~~GyL~-~~~~eia~~l~--~~~~~v~~~l~~lQ~leP~GigAr~l~EcLllQl~~~ 100 (194)
T PF04963_consen 46 DDDGYLT-ESLEEIAEELG--VSEEEVEKALELLQSLEPAGIGARDLQECLLLQLERK 100 (194)
T ss_dssp TTTSTCS-S-HHHHHHHCT--S-HHHHHHHHHHHHTTSS--TTTS-TTHHHHHHHHHS
T ss_pred CCCCccC-CCHHHHHHHhC--CCHHHHHHHHHHHHcCCCCccCcCCHHHHHHHHHhcc
Confidence 4677776 33444444455 66777777776 777777778888666544443
No 290
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=24.96 E-value=63 Score=17.90 Aligned_cols=17 Identities=29% Similarity=0.478 Sum_probs=13.4
Q ss_pred hccCCCCceeHHHHHHH
Q 032081 127 VDVGSDGKIKYEDFIAR 143 (147)
Q Consensus 127 ~d~~~~g~i~~~ef~~~ 143 (147)
...|..|.|+++.|++.
T Consensus 11 ~~~n~~G~iTl~gfLa~ 27 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQ 27 (76)
T ss_pred eEEcCCCcCcHHHHHHH
Confidence 45688899999999863
No 291
>PTZ00315 2'-phosphotransferase; Provisional
Probab=24.94 E-value=2.5e+02 Score=22.46 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=29.5
Q ss_pred CCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Q 032081 92 DKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDV 129 (147)
Q Consensus 92 D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 129 (147)
..+.+|.+..+++.+....-+..++.+++..+...=|+
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK 436 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDK 436 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCC
Confidence 34778999999999888766666888888888776443
No 292
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=24.86 E-value=3.2e+02 Score=23.12 Aligned_cols=101 Identities=10% Similarity=0.158 Sum_probs=52.8
Q ss_pred CCHHHHHHHHh------hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCH
Q 032081 44 PTQAQLKSIIS------EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEP 117 (147)
Q Consensus 44 ~~~~~~~~~~~------~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~ 117 (147)
++...|...++ +......|+..++...+....-.......++.-|-- |.-..+.++.++|..+.+++....--
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~ 215 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQK 215 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccch
Confidence 34445555554 333345566666655443222222222333333332 34566889999999888876543322
Q ss_pred HHHHHH-----HHHhccCCCCceeHHHHHHHHh
Q 032081 118 SEFDEW-----IREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 118 ~~~~~~-----~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..+.+. ...-++...-.|++.+|.++|.
T Consensus 216 a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~ 248 (1267)
T KOG1264|consen 216 AILLEFKKDFILGNTDRPDASVVYLQEFQRFLI 248 (1267)
T ss_pred hhhhcccchhhhcCCCCccceEeeHHHHHHHHH
Confidence 222222 2233333345789999988774
No 293
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=24.59 E-value=1.9e+02 Score=20.45 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=13.7
Q ss_pred CCCCCcchHHHHHHHHhh
Q 032081 57 KLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 57 ~~~~~i~~~ef~~~~~~~ 74 (147)
...|.|+..+|...+...
T Consensus 30 ~~~~~IT~~e~~~~~k~~ 47 (287)
T PRK03095 30 SKAGDITKDEFYEQMKTQ 47 (287)
T ss_pred ecCCcccHHHHHHHHHHH
Confidence 456789999998888654
No 294
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=24.29 E-value=4.2e+02 Score=22.11 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=54.2
Q ss_pred hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHH-------HhcC-------CCCCHHHH
Q 032081 55 EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHIL-------TSIG-------EKLEPSEF 120 (147)
Q Consensus 55 ~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l-------~~~~-------~~~~~~~~ 120 (147)
|...+|.|..-+|.-.+..+..... .+..+.+|..+-.++...+ ...|..+| +.+| .++.+ .+
T Consensus 480 D~~R~g~irvls~ki~~i~lck~~l-eek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvep-sv 556 (966)
T KOG4286|consen 480 DTGRTGRIRVLSFKIGIISLCKAHL-EDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEP-SV 556 (966)
T ss_pred ccCCCcceEEeeehhhHHHHhcchh-HHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCCh-HH
Confidence 8888999999998877776655443 3678899999876665544 44444443 3332 22222 34
Q ss_pred HHHHHHhccCCCCceeHHHHHHHHh
Q 032081 121 DEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 121 ~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
+.+|. ..++-..|+...|+..+.
T Consensus 557 rsCF~--~v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 557 RSCFQ--FVNNKPEIEAALFLDWMR 579 (966)
T ss_pred HHHHH--hcCCCCcchHHHHHHHhc
Confidence 56666 234445688888877653
No 295
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=23.76 E-value=2.4e+02 Score=19.15 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=43.0
Q ss_pred CCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 032081 57 KLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVD 128 (147)
Q Consensus 57 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 128 (147)
+....+....|++.+..+... .+- +-.+.+|....+++...++..+..++.+.+..+...-+
T Consensus 28 ~~~~~~~~SK~lS~vLRH~p~---------~~g-l~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 28 NEKERVKLSKFLSGVLRHFPE---------AIG-LRLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred CcchhhhHHHHHHHHHhcChH---------HcC-eeeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 344566677777776644321 111 22478899999999999999888889888777766644
No 296
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=23.44 E-value=45 Score=16.86 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=13.9
Q ss_pred HHhhhCCCCCCcccHHHHHHHHH
Q 032081 87 AFKVLDKDNTGFVSVSDLRHILT 109 (147)
Q Consensus 87 ~f~~~D~~~~g~I~~~e~~~~l~ 109 (147)
+|+.+...|++.+|..|+...+.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTST
T ss_pred cHHHHHHcCCCCCCHHHHHHHcC
Confidence 34444445567888888876654
No 297
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=23.34 E-value=1.3e+02 Score=15.77 Aligned_cols=11 Identities=0% Similarity=0.311 Sum_probs=6.1
Q ss_pred HHHhcchhccC
Q 032081 13 MKEAFTLFDTD 23 (147)
Q Consensus 13 l~~~f~~~d~~ 23 (147)
+..+|..++.+
T Consensus 12 ve~LwdSL~~~ 22 (63)
T TIGR02574 12 VEDIWDSIAAE 22 (63)
T ss_pred HHHHHHHhccC
Confidence 45566666643
No 298
>PTZ00015 histone H4; Provisional
Probab=23.25 E-value=1.7e+02 Score=17.28 Aligned_cols=65 Identities=11% Similarity=0.168 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHhhcCCCCCcc---hHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCC
Q 032081 43 NPTQAQLKSIISEEKLTAPFD---FPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGE 113 (147)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~i~---~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~ 113 (147)
..+...+.++.+ ..+..+|+ |++....+..+.. +.++.+-......+.-+|+.+++..+++..|.
T Consensus 30 gI~k~~IrRLar-r~GvkRIS~d~y~e~r~vle~~l~-----~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~ 97 (102)
T PTZ00015 30 GITKGAIRRLAR-RGGVKRISGDIYEEVRGVLKAFLE-----NVVRDSTAYTEYARRKTVTAMDVVYALKRQGR 97 (102)
T ss_pred CCCHHHHHHHHH-HcCCccchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence 355566666665 22233444 4444444443322 45666666666778889999999999988775
No 299
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=23.21 E-value=1.7e+02 Score=17.03 Aligned_cols=26 Identities=12% Similarity=0.334 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHH
Q 032081 98 FVSVSDLRHILTSIGEKLEPSEFDEW 123 (147)
Q Consensus 98 ~I~~~e~~~~l~~~~~~~~~~~~~~~ 123 (147)
.|+.++++++.+-.-..+++++...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~ 27 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKF 27 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHH
Confidence 46677777776666566666655543
No 300
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=23.17 E-value=1.8e+02 Score=17.94 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcc-CCCCceeHHHHHHHHh
Q 032081 99 VSVSDLRHILTSIGEKLEPSEFDEWIREVDV-GSDGKIKYEDFIARMV 145 (147)
Q Consensus 99 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~ 145 (147)
|...-+.+.-+..|..+++++++..+..... ..+|..+-+.|.++|.
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~ 131 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLK 131 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3333444444555777777777665555210 0124445555555443
No 301
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=23.09 E-value=22 Score=15.82 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=7.5
Q ss_pred hhhCCCCCCcccHH
Q 032081 89 KVLDKDNTGFVSVS 102 (147)
Q Consensus 89 ~~~D~~~~g~I~~~ 102 (147)
..=|.+++-.|+.+
T Consensus 6 ~qEDTDgn~qITIe 19 (30)
T PF07492_consen 6 EQEDTDGNFQITIE 19 (30)
T ss_pred hccccCCCcEEEEe
Confidence 33455666666544
No 302
>PRK05066 arginine repressor; Provisional
Probab=22.51 E-value=2.2e+02 Score=18.22 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCcccHHHHHHHHHhcCCC-CCHHHHHHHHHHhcc----CCCCc
Q 032081 96 TGFVSVSDLRHILTSIGEK-LEPSEFDEWIREVDV----GSDGK 134 (147)
Q Consensus 96 ~g~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~----~~~g~ 134 (147)
...=+-+|+...|...|.. .|...+..-++.+.. +++|.
T Consensus 21 ~~I~tQeeL~~~L~~~Gi~~vTQATiSRDikeL~lvKv~~~~G~ 64 (156)
T PRK05066 21 EKFGSQGEIVTALQEQGFDNINQSKVSRMLTKFGAVRTRNAKME 64 (156)
T ss_pred CCCCCHHHHHHHHHHCCCCeecHHHHHHHHHHcCCEEeeCCCCC
Confidence 3455788999999999999 899888877776543 45554
No 303
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=22.41 E-value=2.6e+02 Score=20.60 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=52.1
Q ss_pred HHHcCCCCCHHHHHHHHh----hcCCCCCcchHHHHHHHHhhcCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC
Q 032081 37 MRSLGGNPTQAQLKSIIS----EEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIG 112 (147)
Q Consensus 37 l~~~~~~~~~~~~~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~ 112 (147)
+..+.+.+.++++..++. |.+..--+-=++|...+... .+......+..+-+.+..+=+|++-..|+..=++.-
T Consensus 35 m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l-~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~- 112 (355)
T PRK13654 35 MAKLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHL-DPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR- 112 (355)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhC-CHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc-
Confidence 344677777778877777 66655555555666544322 111111223334455566778888888887665432
Q ss_pred CCCCHHHHHHHHHHhccCC
Q 032081 113 EKLEPSEFDEWIREVDVGS 131 (147)
Q Consensus 113 ~~~~~~~~~~~~~~~d~~~ 131 (147)
...+.++|..+.+|.
T Consensus 113 ----nP~lae~F~lMaRDE 127 (355)
T PRK13654 113 ----NPLLAELFQLMARDE 127 (355)
T ss_pred ----CcHHHHHHHHHhhhH
Confidence 245777777777663
No 304
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=22.29 E-value=1.4e+02 Score=15.88 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=23.3
Q ss_pred cHHHHHHHHHhcCCC--CCHH--HHHHHHHHhcc-CCCCceeHHHHHHHH
Q 032081 100 SVSDLRHILTSIGEK--LEPS--EFDEWIREVDV-GSDGKIKYEDFIARM 144 (147)
Q Consensus 100 ~~~e~~~~l~~~~~~--~~~~--~~~~~~~~~d~-~~~g~i~~~ef~~~l 144 (147)
|.-++.++|+++|.- +.+. ++.-|-...+. -..|-|+-++|..+.
T Consensus 3 tlyDVqQLLK~fG~~IY~gdr~~DielM~~El~~Ly~~~lidk~~y~~A~ 52 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYVGDRLWDIELMEIELKELYKSGLIDKKEYLTAK 52 (62)
T ss_dssp SHHHHHHHHHTTS-----S-HHHHHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred cHHHHHHHHHHCCEEEEeCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345788889998843 2222 23222222211 246778888888764
No 305
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=22.28 E-value=3.1e+02 Score=19.84 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=38.5
Q ss_pred CCCCcccHHHHHHHHHhc---------------CCCCCHHHHHHHHHHhccC-----CCCceeHHHHHHHHhc
Q 032081 94 DNTGFVSVSDLRHILTSI---------------GEKLEPSEFDEWIREVDVG-----SDGKIKYEDFIARMVA 146 (147)
Q Consensus 94 ~~~g~I~~~e~~~~l~~~---------------~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~l~~ 146 (147)
-++..++..+|.+++.++ ...+++..+..+.+.+-.| .+|.|+...|...+..
T Consensus 213 L~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~~~Is~W~~ynLlT~ 285 (323)
T PF12987_consen 213 LGDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKGGEISMWNFYNLLTG 285 (323)
T ss_pred hccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCCCcccHHHHHHHHhc
Confidence 467889999999998775 1335677777777665333 2677999999888764
No 306
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=22.08 E-value=96 Score=16.07 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=14.8
Q ss_pred HHHHhccCCCCceeHHHHHHH
Q 032081 123 WIREVDVGSDGKIKYEDFIAR 143 (147)
Q Consensus 123 ~~~~~d~~~~g~i~~~ef~~~ 143 (147)
+++.+.+...|..+|+.+-++
T Consensus 19 ~yhLYrsek~G~rdYEKY~~L 39 (56)
T TIGR02736 19 IYHLYRSQKKGERDYEKYANL 39 (56)
T ss_pred HHHhhhhhcccccCHHHHhhh
Confidence 566677777777887776654
No 307
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.92 E-value=1.7e+02 Score=22.17 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=15.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHH
Q 032081 83 QLRDAFKVLDKDNTGFVSVSDLRHI 107 (147)
Q Consensus 83 ~~~~~f~~~D~~~~g~I~~~e~~~~ 107 (147)
.+-.+|.+.|.+.+|.++.+||.-+
T Consensus 478 vlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 478 VLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred HHHhhhhhhcCCcccCcCHHHHHHH
Confidence 4555666666666666666666533
No 308
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=21.90 E-value=1.7e+02 Score=16.65 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=4.6
Q ss_pred eeHHHHHHHH
Q 032081 135 IKYEDFIARM 144 (147)
Q Consensus 135 i~~~ef~~~l 144 (147)
-.|..|+.+|
T Consensus 66 ~AF~~F~~aL 75 (90)
T cd08332 66 RAFSAFCEAL 75 (90)
T ss_pred hHHHHHHHHH
Confidence 4444444444
No 309
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=21.80 E-value=81 Score=14.66 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=14.8
Q ss_pred hccCCCCccCHHHHHHHHHHc
Q 032081 20 FDTDGDGKIAPSELGILMRSL 40 (147)
Q Consensus 20 ~d~~~~g~i~~~e~~~~l~~~ 40 (147)
-|..+++.++...|.+.+.++
T Consensus 7 kdit~~ntltkrgfykligcl 27 (41)
T PF13121_consen 7 KDITKDNTLTKRGFYKLIGCL 27 (41)
T ss_pred eeccCCCeeehhhHHHHHHHH
Confidence 355567888888888876653
No 310
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=21.62 E-value=2.1e+02 Score=21.44 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=31.7
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhc----------------CCCCCHHHHHHHHHHhc
Q 032081 87 AFKVLDKDNTGFVSVSDLRHILTSI----------------GEKLEPSEFDEWIREVD 128 (147)
Q Consensus 87 ~f~~~D~~~~g~I~~~e~~~~l~~~----------------~~~~~~~~~~~~~~~~d 128 (147)
-|..+|.++.+ +..+.+...|..+ |..+|.+++.++++.+-
T Consensus 146 ~Y~Yyd~~~~~-~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~ 202 (396)
T COG1448 146 TYPYYDAETKG-LDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIK 202 (396)
T ss_pred eeecccccccc-ccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Confidence 47888877755 8989888888876 55677888888777765
No 311
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=21.41 E-value=1.6e+02 Score=16.20 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=39.1
Q ss_pred CHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHc--CCCCCHHHHHHHHhhcCCCCCcchHHHHHH
Q 032081 6 SDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSL--GGNPTQAQLKSIISEEKLTAPFDFPRFLDL 70 (147)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 70 (147)
+..+.+.+.+.|.....-..|+-+..-+-.+..-+ +..++++++.+.+. .+-..--.|..++..
T Consensus 7 ~~~~~~~iq~af~~~~a~QCGfCtpG~im~~~~ll~~~~~p~~~ei~~al~-gnlCRCTgY~~I~~A 72 (75)
T PF01799_consen 7 SDGELHPIQQAFVEHGAVQCGFCTPGMIMAAYALLRRNPDPTEEEIREALS-GNLCRCTGYRPIVEA 72 (75)
T ss_dssp BTTB--HHHHHHHHTT--SSSSSHHHHHHHHHHHHHHSSS-CHHHHHHHTT-TS--SSSTSHHHHHH
T ss_pred CCCCcCHHHHHHHHhCCCcCCcchHHHHHHHHHHhhcccchhhHHHHHHHH-cCccCCCCcHHHHHH
Confidence 34567788889999988899999998876544333 56789999999885 222223345544443
No 312
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=21.40 E-value=1.2e+02 Score=14.75 Aligned_cols=21 Identities=10% Similarity=0.215 Sum_probs=17.2
Q ss_pred cHHHHHHHHHhcCCCCCHHHH
Q 032081 100 SVSDLRHILTSIGEKLEPSEF 120 (147)
Q Consensus 100 ~~~e~~~~l~~~~~~~~~~~~ 120 (147)
+.+++..+.+..|..++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 677888888888988887765
No 313
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.31 E-value=1.4e+02 Score=19.29 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=7.0
Q ss_pred chHHHHHHHHhhcC
Q 032081 63 DFPRFLDLMAKHMK 76 (147)
Q Consensus 63 ~~~ef~~~~~~~~~ 76 (147)
+-+||+.-+....+
T Consensus 2 ~k~efL~~L~~~L~ 15 (181)
T PF08006_consen 2 NKNEFLNELEKYLK 15 (181)
T ss_pred CHHHHHHHHHHHHH
Confidence 34555555554443
No 314
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=21.01 E-value=1.8e+02 Score=16.52 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=5.8
Q ss_pred ccHHHHHHHHHhc
Q 032081 99 VSVSDLRHILTSI 111 (147)
Q Consensus 99 I~~~e~~~~l~~~ 111 (147)
+|..+..+++..+
T Consensus 40 ~T~~Qv~~il~~f 52 (95)
T PF14771_consen 40 FTCAQVKQILSLF 52 (95)
T ss_pred eeHHHHHHHHHHc
Confidence 4444444444443
No 315
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.00 E-value=2.2e+02 Score=17.59 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=20.2
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHh------hcCCCCCcc
Q 032081 25 DGKIAPSELGILMRSLGGNPTQAQLKSIIS------EEKLTAPFD 63 (147)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~i~ 63 (147)
.|.||..|-.++|..-. +...+++..-+. |+.+.|+.-
T Consensus 53 ~~~iTlqEa~qILnV~~-~ln~eei~k~yehLFevNdkskGGSFY 96 (132)
T KOG3442|consen 53 NGKITLQEAQQILNVKE-PLNREEIEKRYEHLFEVNDKSKGGSFY 96 (132)
T ss_pred cccccHHHHhhHhCCCC-CCCHHHHHHHHHHHHhccCcccCccee
Confidence 35577777666655322 455555554444 555555543
No 316
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=20.98 E-value=2e+02 Score=20.06 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHhcchhccCCCCccCHHHHHH
Q 032081 5 LSDDQVSSMKEAFTLFDTDGDGKIAPSELGI 35 (147)
Q Consensus 5 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~ 35 (147)
+|-.|++++++++..++.+ +|.++..++..
T Consensus 177 LSySEleAv~~IL~~L~~~-egrlse~eLAe 206 (251)
T TIGR02787 177 LSYSELEAVEHIFEELDGN-EGLLVASKIAD 206 (251)
T ss_pred ccHhHHHHHHHHHHHhccc-cccccHHHHHH
Confidence 4445566666666666533 46666666555
No 317
>COG3820 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.83 E-value=98 Score=20.41 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCCcchHHHHHHHHhhcCCCC--hHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 032081 59 TAPFDFPRFLDLMAKHMKPEP--FDRQLRDAFKVLDKDNTGFVSVSDLRHIL 108 (147)
Q Consensus 59 ~~~i~~~ef~~~~~~~~~~~~--~~~~~~~~f~~~D~~~~g~I~~~e~~~~l 108 (147)
+..++|++...+|..+..... ....+.+-.+=+|+=.+|.++.+|+..+-
T Consensus 18 NTsLsF~QIA~FCglHplEvk~iADGE~aq~IkGldPI~~GQLtreEi~rae 69 (230)
T COG3820 18 NTSLSFDQIADFCGLHPLEVKGIADGEVAQGIKGLDPIANGQLTREEIARAE 69 (230)
T ss_pred cccccHHHHHHHhCcCcceeeeeccchhhccccCCCccccCcccHHHHHhhh
Confidence 346788887777765432211 12345555666777788888888887664
No 318
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.70 E-value=1.6e+02 Score=16.82 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=26.4
Q ss_pred CHHHHHHHHHhcchhccCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHHh
Q 032081 6 SDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSL-GGNPTQAQLKSIIS 54 (147)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~ 54 (147)
|.++...+...|+....--.+.++..+|....+.+ .+.|+..+-.++++
T Consensus 12 sTEE~~~Vl~Ffn~VE~aYE~gv~~~~ll~~Yr~FK~IVPsK~eEKql~r 61 (90)
T COG4476 12 STEEMISVLHFFNAVELAYEKGVDAEDLLGSYRRFKEIVPSKAEEKQLGR 61 (90)
T ss_pred cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcCchHHHHHHhH
Confidence 34455555556665555555556666665555554 24444445555554
No 319
>PF13551 HTH_29: Winged helix-turn helix
Probab=20.37 E-value=1.9e+02 Score=16.51 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhcchhccCCCCccCHHHHHHHH-HH-cCCCCCHHHHHHHH
Q 032081 5 LSDDQVSSMKEAFTLFDTDGDGKIAPSELGILM-RS-LGGNPTQAQLKSII 53 (147)
Q Consensus 5 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~~-~~~~~~~~~~~~~~ 53 (147)
++++....+.+.+...-.++.+..+...+...+ .. .+..++..-+..++
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L 108 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRIL 108 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHH
Confidence 455555555555544333322345566665533 22 45555555555544
No 320
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=20.28 E-value=1.1e+02 Score=16.18 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=15.2
Q ss_pred HHHhhhCCCCCCcccHHHHHHHH
Q 032081 86 DAFKVLDKDNTGFVSVSDLRHIL 108 (147)
Q Consensus 86 ~~f~~~D~~~~g~I~~~e~~~~l 108 (147)
.||+++ .+.+|.|+..++..-|
T Consensus 11 kA~e~y-~~~~g~i~lkdIA~~L 32 (60)
T PF10668_consen 11 KAFEIY-KESNGKIKLKDIAEKL 32 (60)
T ss_pred HHHHHH-HHhCCCccHHHHHHHH
Confidence 344444 4677999988887665
No 321
>PRK08181 transposase; Validated
Probab=20.21 E-value=2.7e+02 Score=19.56 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=22.6
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHh
Q 032081 97 GFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMV 145 (147)
Q Consensus 97 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 145 (147)
..|+.+.+...|+.+...--.+.+....... ..+.++|.||+..|.
T Consensus 5 ~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a---~~~~~~~~e~L~~ll 50 (269)
T PRK08181 5 NVIDEARLGLLLNELRLPTIKTLWPQFAEQA---DKEGWPAARFLAAIA 50 (269)
T ss_pred CcccHHHHHHHHHHcCchHHHHHHHHHHHHH---hhcCCCHHHHHHHHH
Confidence 3455566666666655432222333333322 234466777666553
No 322
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=20.16 E-value=2.6e+02 Score=18.07 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=26.4
Q ss_pred hhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 032081 90 VLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREV 127 (147)
Q Consensus 90 ~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 127 (147)
.+-.+...+|+-+++.-+|..+|..-=-+-+...+..|
T Consensus 78 kC~~EkRKTIngdDllwAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 78 KCQREKRKTINGDDLLWAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred HHHHHhcCcccHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 34457788999999999999998643334455555554
No 323
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=20.12 E-value=64 Score=17.26 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=15.8
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 032081 97 GFVSVSDLRHILTSIGEKLEPSEFDEWIRE 126 (147)
Q Consensus 97 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 126 (147)
|.++..-+...|+.+-.....+++..|+..
T Consensus 48 grvskavlvkmlrkly~~tk~e~vkrmlhl 77 (79)
T PF09061_consen 48 GRVSKAVLVKMLRKLYEATKNEEVKRMLHL 77 (79)
T ss_dssp S-EEHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhhchHHHHHHHHh
Confidence 556666666666665443445566666654
No 324
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=20.11 E-value=24 Score=22.04 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=26.4
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCcchHHHHHHHHhh
Q 032081 27 KIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKH 74 (147)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 74 (147)
.+|..|++.+.+.+.-.++..--..++ .+.+.+|+|+.....+...
T Consensus 9 ~vTldevr~Av~~f~~~lp~gi~rt~l--v~~d~~iD~~~L~~yL~g~ 54 (140)
T PF13075_consen 9 DVTLDEVRRAVHQFEEDLPKGINRTIL--VNDDQSIDFERLAPYLGGI 54 (140)
T ss_pred cccHHHHHHHHHHHHHhCccCCceEEE--EcCCceecHHHHhhhcCCC
Confidence 467777777777664443333222222 3556778887766655544
Done!