BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032082
         (147 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O83425|SECD_TREPA Protein translocase subunit SecD OS=Treponema pallidum (strain
           Nichols) GN=secD PE=3 SV=1
          Length = 583

 Score = 29.6 bits (65), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 3   WGVAAGRKTMVATAMLLLVL-SGPVKALAYLLTHGVLGFSMGSLW--RLGVDWGLSIF 57
           W +     T    A+ L VL +GP+K  AY L  GV+     +L+  RL  D+G  + 
Sbjct: 512 WAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSRLMFDYGTEVL 569


>sp|B6JHM4|GUAA_OLICO GMP synthase [glutamine-hydrolyzing] OS=Oligotropha carboxidovorans
           (strain ATCC 49405 / DSM 1227 / OM5) GN=guaA PE=3 SV=1
          Length = 531

 Score = 28.9 bits (63), Expect = 10.0,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 10  KTMVATAMLLLVLSGPV-KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFF 68
           +  V    ++  LSG V  A+A +L H  +G  +  ++   VD GL + +       S F
Sbjct: 228 RAQVGQGRVICGLSGGVDSAVAAVLIHEAIGDQLTCVF---VDHGL-LRMAEAETVVSLF 283

Query: 69  LDFFNHITINIHASLTFIFSAAGV 92
            D +N   +++ AS TF+   AGV
Sbjct: 284 RDHYNIPLVHVDASKTFLGELAGV 307


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.335    0.145    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,390,838
Number of Sequences: 539616
Number of extensions: 1720044
Number of successful extensions: 7926
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 7916
Number of HSP's gapped (non-prelim): 53
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)