Query 032082
Match_columns 147
No_of_seqs 101 out of 124
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09991 DUF2232: Predicted me 99.8 2.3E-17 4.9E-22 133.2 18.5 141 1-142 33-197 (290)
2 COG4241 Predicted membrane pro 99.1 4.4E-11 9.5E-16 99.1 4.8 141 1-143 47-209 (314)
3 COG4241 Predicted membrane pro 98.8 8.2E-09 1.8E-13 85.7 6.3 145 1-146 136-309 (314)
4 TIGR02357 thia_yuaJ probable p 91.5 1.6 3.5E-05 33.9 8.2 47 1-49 44-97 (183)
5 PF13858 DUF4199: Protein of u 87.5 9.6 0.00021 28.1 16.5 22 109-130 141-162 (163)
6 PF12822 DUF3816: Protein of u 82.6 17 0.00037 26.8 13.3 51 3-53 42-100 (172)
7 PF07155 ECF-ribofla_trS: ECF- 82.2 18 0.0004 26.9 14.4 50 3-52 49-99 (169)
8 PF09515 Thia_YuaJ: Thiamine t 80.7 5.6 0.00012 30.9 5.8 59 1-62 40-115 (177)
9 PRK04032 hypothetical protein; 68.4 52 0.0011 25.3 12.8 26 112-137 133-158 (159)
10 TIGR00791 gntP gluconate trans 66.2 89 0.0019 27.1 12.3 28 39-66 11-38 (440)
11 PRK11339 abgT putative aminobe 65.6 1.1E+02 0.0023 27.8 12.5 125 2-133 259-425 (508)
12 COG5547 Small integral membran 65.5 34 0.00074 22.1 6.3 45 2-49 8-52 (62)
13 COG1266 Predicted metal-depend 60.7 39 0.00084 25.3 6.4 52 9-60 156-208 (226)
14 PF03591 AzlC: AzlC protein; 59.6 28 0.00061 25.7 5.2 33 30-62 2-35 (143)
15 COG1176 PotB ABC-type spermidi 58.5 1.1E+02 0.0024 25.6 10.3 68 29-97 76-147 (287)
16 PF04306 DUF456: Protein of un 56.7 70 0.0015 23.7 7.0 51 4-60 60-111 (140)
17 PRK03001 M48 family peptidase; 54.8 1.2E+02 0.0025 24.8 8.8 68 27-94 5-84 (283)
18 TIGR02359 thiW thiW protein. L 54.1 97 0.0021 23.7 9.5 50 3-55 45-95 (160)
19 PRK13661 hypothetical protein; 53.1 1.1E+02 0.0023 23.9 13.2 47 3-49 51-97 (182)
20 TIGR00346 azlC 4-azaleucine re 51.5 57 0.0012 26.1 6.1 36 27-62 8-44 (221)
21 PF05957 DUF883: Bacterial pro 50.5 20 0.00043 24.4 3.0 23 24-49 72-94 (94)
22 PF02517 Abi: CAAX protease se 49.0 72 0.0016 20.7 6.8 47 9-57 37-83 (91)
23 PF01102 Glycophorin_A: Glycop 48.4 25 0.00055 25.8 3.3 26 27-52 67-94 (122)
24 PF13687 DUF4153: Domain of un 48.0 1.1E+02 0.0024 23.9 7.2 58 27-85 157-216 (217)
25 PF13493 DUF4118: Domain of un 45.5 27 0.00058 23.7 3.0 50 2-51 43-104 (105)
26 PF03609 EII-Sor: PTS system s 44.8 1.7E+02 0.0036 23.6 9.6 91 48-145 88-180 (238)
27 TIGR00819 ydaH p-Aminobenzoyl- 44.3 2.5E+02 0.0054 25.5 10.8 19 30-48 309-327 (513)
28 PF11177 DUF2964: Protein of u 43.5 91 0.002 20.3 5.1 43 2-45 3-49 (62)
29 PF01219 DAGK_prokar: Prokaryo 42.7 1.2E+02 0.0026 21.4 9.4 77 44-120 10-99 (104)
30 PF01864 DUF46: Putative integ 40.4 1.7E+02 0.0038 22.6 11.6 27 111-137 148-174 (175)
31 COG3949 Uncharacterized membra 39.9 1.9E+02 0.0041 25.1 7.7 56 80-137 230-290 (349)
32 PRK03982 heat shock protein Ht 39.1 2.1E+02 0.0047 23.3 8.0 17 78-94 69-85 (288)
33 PF15050 SCIMP: SCIMP protein 37.8 78 0.0017 23.5 4.5 35 99-133 6-40 (133)
34 PF01032 FecCD: FecCD transpor 37.2 2.4E+02 0.0053 23.4 8.6 82 27-111 101-188 (311)
35 PF07456 Hpre_diP_synt_I: Hept 33.7 2.1E+02 0.0045 21.6 10.0 47 2-48 39-88 (148)
36 COG1296 AzlC Predicted branche 33.2 1.9E+02 0.004 23.6 6.5 37 26-62 17-54 (238)
37 TIGR03008 pepcterm_CAAX CAAX p 33.1 1.7E+02 0.0037 23.4 6.2 30 33-62 176-205 (222)
38 COG3856 Sbp Uncharacterized co 32.4 1.2E+02 0.0026 21.8 4.6 51 37-93 9-82 (113)
39 PF04156 IncA: IncA protein; 31.8 1.7E+02 0.0037 22.0 5.8 17 27-43 33-49 (191)
40 PRK11486 flagellar biosynthesi 31.3 71 0.0015 23.5 3.4 22 112-133 23-44 (124)
41 PF13301 DUF4079: Protein of u 29.6 80 0.0017 24.5 3.6 33 22-54 4-36 (175)
42 TIGR02663 nifX nitrogen fixati 29.5 28 0.00061 24.7 1.0 11 137-147 109-119 (119)
43 PF03806 ABG_transport: AbgT p 29.3 4.4E+02 0.0095 24.0 13.6 90 30-126 302-404 (502)
44 PF04892 VanZ: VanZ like famil 28.7 1.3E+02 0.0028 21.0 4.4 36 27-62 53-88 (133)
45 COG2917 Intracellular septatio 28.7 1.1E+02 0.0024 24.0 4.3 54 23-76 49-105 (180)
46 COG1983 PspC Putative stress-r 28.6 1.2E+02 0.0026 20.2 3.9 37 97-133 28-65 (70)
47 COG4149 ModC ABC-type molybdat 28.0 3.3E+02 0.0072 22.1 12.2 26 37-62 25-50 (225)
48 PF02632 BioY: BioY family; I 26.9 2.1E+02 0.0046 21.3 5.5 30 20-51 53-82 (148)
49 COG2966 Uncharacterized conser 26.8 3.5E+02 0.0076 22.0 9.9 45 81-125 186-233 (250)
50 COG3190 FliO Flagellar biogene 26.6 93 0.002 23.4 3.4 33 101-133 18-50 (137)
51 COG0472 Rfe UDP-N-acetylmuramy 26.4 2.3E+02 0.0049 23.9 6.1 40 20-62 182-223 (319)
52 PF07869 DUF1656: Protein of u 25.3 1.7E+02 0.0037 18.3 4.0 40 105-146 10-49 (58)
53 PF04930 FUN14: FUN14 family; 25.2 2.3E+02 0.005 19.4 6.4 26 36-62 6-31 (100)
54 TIGR02978 phageshock_pspC phag 24.5 2E+02 0.0043 20.9 4.8 42 87-132 21-62 (121)
55 COG3247 HdeD Uncharacterized c 24.5 2.9E+02 0.0062 21.7 5.9 40 34-73 113-154 (185)
56 PRK09928 choline transport pro 24.0 6.2E+02 0.013 23.9 9.4 20 33-52 154-173 (679)
57 TIGR00271 uncharacterized hydr 23.9 2.3E+02 0.0051 21.9 5.3 20 11-30 28-47 (175)
58 COG3702 VirB3 Type IV secretor 23.1 1.6E+02 0.0035 21.1 3.9 41 90-130 21-64 (105)
59 PF11085 YqhR: Conserved membr 22.7 3.8E+02 0.0082 20.9 6.8 60 2-73 60-120 (173)
60 PRK13751 putative mercuric tra 22.4 2.6E+02 0.0057 20.3 5.0 31 27-59 26-56 (116)
61 TIGR00341 conserved hypothetic 22.4 2.1E+02 0.0045 24.5 5.2 19 11-29 137-155 (325)
62 COG0555 CysU ABC-type sulfate 22.0 3.6E+02 0.0077 22.5 6.3 28 70-97 156-183 (274)
63 TIGR03426 shape_MreD rod shape 22.0 3.1E+02 0.0068 19.7 8.0 46 2-48 44-89 (154)
64 PRK03356 L-carnitine/gamma-but 21.7 6.1E+02 0.013 23.0 10.1 21 33-53 148-168 (504)
65 PRK09921 permease DsdX; Provis 21.6 5.7E+02 0.012 22.6 11.1 25 39-63 16-40 (445)
66 PF12072 DUF3552: Domain of un 21.0 1E+02 0.0022 24.1 2.8 23 30-52 4-26 (201)
67 COG1268 BioY Uncharacterized c 21.0 4.1E+02 0.0089 20.8 11.3 31 19-51 81-111 (184)
68 PRK11089 PTS system glucose-sp 20.7 6.2E+02 0.013 22.7 10.7 105 32-137 256-384 (477)
69 PRK09459 pspG phage shock prot 20.6 2.8E+02 0.0062 18.7 6.1 35 16-50 31-65 (76)
70 PRK10699 phosphatidylglyceroph 20.0 3.5E+02 0.0076 22.0 5.9 23 35-57 57-79 (244)
No 1
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=99.78 E-value=2.3e-17 Score=133.22 Aligned_cols=141 Identities=28% Similarity=0.514 Sum_probs=120.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HHHHHh---
Q 032082 1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVV--------FASFFL--- 69 (147)
Q Consensus 1 ~R~G~k~~~~~~~va~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~~--------~~~s~l--- 69 (147)
.|||.|.+..+.++++++...+.||..++.+.+.+++.|+.+|+++|||+++..++..++.+. .+....
T Consensus 33 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 112 (290)
T PF09991_consen 33 LRYGLKYGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKKRSWSRSILAGTLASLLGVLVFFLLLAYLSGI 112 (290)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 489999999998888888899999999999999999999999999999999999999888872 222222
Q ss_pred hHHHHHHHHHHHHHHHH---HHHcCCCC----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 032082 70 DFFNHITINIHASLTFI---FSAAGVNI----------VPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKAS 136 (147)
Q Consensus 70 N~~~~~~~~~~~~l~~~---~~~lG~~~----------~p~~~~i~~l~p~liv~~s~i~~~i~~~va~~iL~Rlg~~~i 136 (147)
|+.++..++++|..|+. +++.|.++ ++..+.+..+.|+++++.++++++++|.+++.++||.|. +.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~~i~~~~~~~~~~~l~~~il~r~~~-~~ 191 (290)
T PF09991_consen 113 NIFEQLIEQIQESIEQVLKIYSQSGLPQDQVDQLQKNLQQIAELIKRLFPALLIISALLMSLINYYLARRILRRLGI-PI 191 (290)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 88888888887777775 55667653 233778999999999999999999999999999999999 78
Q ss_pred CCCcHH
Q 032082 137 LRLPRW 142 (147)
Q Consensus 137 p~~Pp~ 142 (147)
|++||.
T Consensus 192 ~~~~~~ 197 (290)
T PF09991_consen 192 PPLPPF 197 (290)
T ss_pred CCCCch
Confidence 888875
No 2
>COG4241 Predicted membrane protein [Function unknown]
Probab=99.14 E-value=4.4e-11 Score=99.10 Aligned_cols=141 Identities=16% Similarity=0.151 Sum_probs=113.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH--------HHHHHHh---
Q 032082 1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIV--------VFASFFL--- 69 (147)
Q Consensus 1 ~R~G~k~~~~~~~va~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~--------~~~~s~l--- 69 (147)
.|||.|.+.+ +..++..-..+.+|-......+++++-|+.+|...||..+.+..+..++.+ ++..|..
T Consensus 47 ~k~g~k~~v~-~~~v~~~~~~~i~~~~l~~v~l~~~~p~vv~~~~~kr~e~~f~i~~~~s~~amiwi~~~yF~ls~~~~~ 125 (314)
T COG4241 47 LKHGLKHGVE-VLIVAVGVVILIDSKALLLVALMFLIPGVVMGILLKRVEKAFAIMSGASTAAMIWIINFYFPLSIVIRI 125 (314)
T ss_pred HHhccchhhh-eeeEeeeeeEEecchHHHHHHHHHhCchhhhhHHHHhccchhhHHhhHHHHHHHHHHHHHHHhhhhhcc
Confidence 3899999844 467777778888899999999999999999999999977777776555666 1223333
Q ss_pred -hHHHHHHHHHHHHHHH---HHHHcCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 032082 70 -DFFNHITINIHASLTF---IFSAAGVNI-------VPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLR 138 (147)
Q Consensus 70 -N~~~~~~~~~~~~l~~---~~~~lG~~~-------~p~~~~i~~l~p~liv~~s~i~~~i~~~va~~iL~Rlg~~~ip~ 138 (147)
|+..+..+.++++++. ++.+.|.+. +++.+..+++.|..+++.+.++++.++.++.+++||++. ++|.
T Consensus 126 inpv~~a~~~~Rqsl~~a~~~~i~~G~~~~~~l~iLees~~~~~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~-~v~~ 204 (314)
T COG4241 126 INPVDDAVVYLRQSLNAAIKMAIAAGNNVDDALKILEESFTQQLYLGPGRIVIFGTIFALMTLLVGFPILRRLKI-KVPI 204 (314)
T ss_pred cCCcHHHHHHHHhhhHHHHHHHHHccCChHHHHHHHHHHHhhHHhhCCceeehhHHHHHHHHHHHhHHHHHhCCc-cCCC
Confidence 9999999998887776 566788654 344555678899999999999999999999999999999 7999
Q ss_pred CcHHH
Q 032082 139 LPRWL 143 (147)
Q Consensus 139 ~Pp~~ 143 (147)
++|-.
T Consensus 205 ~~p~~ 209 (314)
T COG4241 205 FLPFR 209 (314)
T ss_pred cccee
Confidence 98853
No 3
>COG4241 Predicted membrane protein [Function unknown]
Probab=98.82 E-value=8.2e-09 Score=85.71 Aligned_cols=145 Identities=13% Similarity=0.054 Sum_probs=115.7
Q ss_pred CccchhHHHHHHHHHH---------HHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH-----
Q 032082 1 MRWGVAAGRKTMVATA---------MLLLV----LSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIV----- 62 (147)
Q Consensus 1 ~R~G~k~~~~~~~va~---------lll~~----l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~----- 62 (147)
+||+..+++..+..+| +..++ .+||.+.+.+..+|+.++...|.+|.||.+|......+...
T Consensus 136 ~Rqsl~~a~~~~i~~G~~~~~~l~iLees~~~~~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~~v~~~~p~~~~~f~~ 215 (314)
T COG4241 136 LRQSLNAAIKMAIAAGNNVDDALKILEESFTQQLYLGPGRIVIFGTIFALMTLLVGFPILRRLKIKVPIFLPFRNWTFPN 215 (314)
T ss_pred HHhhhHHHHHHHHHccCChHHHHHHHHHHHhhHHhhCCceeehhHHHHHHHHHHHhHHHHHhCCccCCCccceeeEeech
Confidence 4899999999999999 88899 99999999999999999999999999999999988877665
Q ss_pred ---HHHHHHh---hHHHHHHHHHHHHHHHHHHHcC--CCCcc--hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 032082 63 ---VFASFFL---DFFNHITINIHASLTFIFSAAG--VNIVP--SMNVIYVIFGTLVLLN-SGFFVFLLHLLYSVFLTRL 131 (147)
Q Consensus 63 ---~~~~s~l---N~~~~~~~~~~~~l~~~~~~lG--~~~~p--~~~~i~~l~p~liv~~-s~i~~~i~~~va~~iL~Rl 131 (147)
++-.+++ |+|++-..++.++.+|.++..+ .-..| +.-.++.-+-.+.-.+ +++|.+.+|......+.|+
T Consensus 216 ~fl~~ylivv~~~~l~~~~~gqv~~~I~wnfl~vl~l~l~iqGlSvI~~y~~akgl~~av~vli~ilgiilt~ll~lvrl 295 (314)
T COG4241 216 SFLFWYLIVVCLELLWKYENGQVTYSIYWNFLMVLGLLLAIQGLSVIFFYLKAKGLPNAVIVLILILGIILTPLLYLVRL 295 (314)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhccccceeeehhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333333 9998888999999999766533 22234 3333344343344444 7888999999999999999
Q ss_pred CCCCCCCCcHHHHhh
Q 032082 132 GMKASLRLPRWLEMA 146 (147)
Q Consensus 132 g~~~ip~~Pp~~~~~ 146 (147)
+. .++.+|.|.++-
T Consensus 296 lg-~Id~~~~~rki~ 309 (314)
T COG4241 296 LG-VIDLGFDLRKIM 309 (314)
T ss_pred cC-CCCCCHHHHHHH
Confidence 99 799999998863
No 4
>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ. Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptoccus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.
Probab=91.48 E-value=1.6 Score=33.95 Aligned_cols=47 Identities=30% Similarity=0.479 Sum_probs=32.4
Q ss_pred CccchhHHHHHHHHHHHHHHHHhh------hhHHHH-HHHHHHHHHHHHHHHHHhC
Q 032082 1 MRWGVAAGRKTMVATAMLLLVLSG------PVKALA-YLLTHGVLGFSMGSLWRLG 49 (147)
Q Consensus 1 ~R~G~k~~~~~~~va~lll~~l~G------p~~~l~-~~~~~G~lG~~lG~~~~~~ 49 (147)
.|||.|+|...-++.+++ .++.| |+..+. +.+.|+.+|+ =|..+|++
T Consensus 44 ~~~Gp~~G~~~G~i~Gll-~~~~g~~~~~~p~q~~ldy~~a~~~iGl-aGl~~~~~ 97 (183)
T TIGR02357 44 FRRGLKAGLVAGLIWGLL-KIILGTAYILHPVQVLLDYILAFMALGL-AGVFRIKK 97 (183)
T ss_pred HHHccHHHHHHHHHHHHH-HHHhCCcccccHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 389999997765555544 44445 334444 7889999999 77777754
No 5
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=87.47 E-value=9.6 Score=28.12 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 032082 109 VLLNSGFFVFLLHLLYSVFLTR 130 (147)
Q Consensus 109 iv~~s~i~~~i~~~va~~iL~R 130 (147)
.++.+++.-++.=++...++||
T Consensus 141 ~~~~~l~~G~i~sli~a~i~kk 162 (163)
T PF13858_consen 141 GFISNLIFGFIISLIIALILKK 162 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4555566666666666666665
No 6
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=82.64 E-value=17 Score=26.84 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=33.4
Q ss_pred cchhHHHHHHHHHHHHHHHHhhh---hHH---HHHHHHHHHHHHHHHHHHH--hCCChH
Q 032082 3 WGVAAGRKTMVATAMLLLVLSGP---VKA---LAYLLTHGVLGFSMGSLWR--LGVDWG 53 (147)
Q Consensus 3 ~G~k~~~~~~~va~lll~~l~Gp---~~~---l~~~~~~G~lG~~lG~~~~--~~~s~~ 53 (147)
-|.++|.....++.++=.++.+| ... +.+.+.-.+.|+.-|+++| |++++.
T Consensus 42 ~Gp~~G~~~g~i~~il~~l~~~~~~~~~~~~~~~~~l~~~l~gl~~g~~~~~~~~~~~~ 100 (172)
T PF12822_consen 42 LGPVWGALVGFISDILSFLIFGGGGPFIFPGFPGFTLPAALFGLIAGLLYKKLKKKSKK 100 (172)
T ss_dssp S-HHHHHHHHHHHHHHHHHH-TTT-SSHH---HHHHHHHHHHHHHHHHHHT--SS-SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHH
Confidence 47888877766666655555433 232 7788888899999999994 445553
No 7
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=82.15 E-value=18 Score=26.85 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=36.6
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHhCCCh
Q 032082 3 WGVAAGRKTMVATAMLLLVLSGPVKALAY-LLTHGVLGFSMGSLWRLGVDW 52 (147)
Q Consensus 3 ~G~k~~~~~~~va~lll~~l~Gp~~~l~~-~~~~G~lG~~lG~~~~~~~s~ 52 (147)
.|.+.|.....++.++-.++.|...-.+. .+..|+.|+..|+.++|++..
T Consensus 49 ~Gp~~G~ivg~ig~~l~dll~g~~~~~~~~~i~~~~~g~i~g~~~~~~~~~ 99 (169)
T PF07155_consen 49 FGPKYGAIVGAIGDLLSDLLSGYGPWAPFTMISKGLMGFIAGLIFRKKKKK 99 (169)
T ss_pred HChHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 47788866655666655666665445555 899999999999999997443
No 8
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=80.70 E-value=5.6 Score=30.94 Aligned_cols=59 Identities=34% Similarity=0.445 Sum_probs=33.5
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhh------hHH-HHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHH
Q 032082 1 MRWGVAAGRKTMVATAMLLLVLSGP------VKA-LAYLLTHGVLGFSMGSLWRL----------GVDWGLSIFLCTIV 62 (147)
Q Consensus 1 ~R~G~k~~~~~~~va~lll~~l~Gp------~~~-l~~~~~~G~lG~~lG~~~~~----------~~s~~~s~~~g~l~ 62 (147)
.|||.|+|..+-++.++ +-++.|| .+. +=|.++|+.+|+ ...+++ .++...-+..|+++
T Consensus 40 ~r~G~~~G~~~G~l~Gl-l~~~~g~~~~~~p~q~llDY~laf~~lGl--aGlf~~~~~~~~~~~~~~~~~~~i~~g~~i 115 (177)
T PF09515_consen 40 FRRGWKAGILAGFLYGL-LQFLLGPAYIVHPVQVLLDYPLAFGALGL--AGLFAKPLQKTLKNNRYKKSYLNIILGTFI 115 (177)
T ss_dssp HHH-HHHHHHHHHHHHH-HHHHTT-S--SSHHHHHHHHTHHHHHGGG--GGGG-----------SSS--HHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHH-HHHHhCCceehhHHHHHHHHHHHHHHHHH--HHhcccccchhhhhcccchhHHHHHHHHHH
Confidence 39999999888777776 5556776 222 235778888887 333333 23444555566655
No 9
>PRK04032 hypothetical protein; Provisional
Probab=68.40 E-value=52 Score=25.26 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCC
Q 032082 112 NSGFFVFLLHLLYSVFLTRLGMKASL 137 (147)
Q Consensus 112 ~s~i~~~i~~~va~~iL~Rlg~~~ip 137 (147)
..++...++|+....++-|+|.|+.|
T Consensus 133 ~~~~~~~~~~~~~n~~l~~l~lk~~~ 158 (159)
T PRK04032 133 LILVITPLLHLLTNIIAYKLGLKDVP 158 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34455678999999999999996443
No 10
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=66.23 E-value=89 Score=27.14 Aligned_cols=28 Identities=4% Similarity=0.007 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 032082 39 GFSMGSLWRLGVDWGLSIFLCTIVVFAS 66 (147)
Q Consensus 39 G~~lG~~~~~~~s~~~s~~~g~l~~~~~ 66 (147)
.+.+-...|.|.+++.+...++++..+.
T Consensus 11 ~~~~~~~~~~k~~~~ial~~~a~~~~l~ 38 (440)
T TIGR00791 11 VLLLLLIMKFKLNTFVALLVVSFGVGLA 38 (440)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 5666777888899999999888884333
No 11
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=65.57 E-value=1.1e+02 Score=27.85 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=67.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHh----hhhHH----------------HHHHHHHHHHHHHHHHHHHhCCChHHHH--HHH
Q 032082 2 RWGVAAGRKTMVATAMLLLVLS----GPVKA----------------LAYLLTHGVLGFSMGSLWRLGVDWGLSI--FLC 59 (147)
Q Consensus 2 R~G~k~~~~~~~va~lll~~l~----Gp~~~----------------l~~~~~~G~lG~~lG~~~~~~~s~~~s~--~~g 59 (147)
|+|+|++-.+.++....+..++ ||+|. ....+.|-..|++.|..-++=||.-... +.-
T Consensus 259 kkgLr~Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~iks~~Dv~~~m~~ 338 (508)
T PRK11339 259 RFGLRIAGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRRQADLPHLMIE 338 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHH
Confidence 5677777666565555555554 33332 1466778899999999988444443322 222
Q ss_pred HHH--------HHHHHHh-hH--HHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 032082 60 TIV--------VFASFFL-DF--FNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLY---- 124 (147)
Q Consensus 60 ~l~--------~~~~s~l-N~--~~~~~~~~~~~l~~~~~~lG~~~~p~~~~i~~l~p~liv~~s~i~~~i~~~va---- 124 (147)
+.- .+..+.+ .. +...-+.+.-...+.++++|++..|.. ..++++++++..|+.-.=+
T Consensus 339 g~~~m~~~ivl~F~~Aqfia~F~~snlG~ilav~gA~~L~~~~l~~~pl~-------i~~ill~a~iNlfI~SgSakwai 411 (508)
T PRK11339 339 PMKEMAGFIVMVFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLSGIPAF-------VGLALLSSFLCMFIASGSAIWSI 411 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchHHH-------HHHHHHHHHHHHccccHHHHHHH
Confidence 111 1122222 22 111222223334445688888866654 6677777777777654333
Q ss_pred -----HHHHhhhCC
Q 032082 125 -----SVFLTRLGM 133 (147)
Q Consensus 125 -----~~iL~Rlg~ 133 (147)
-|.+..+|+
T Consensus 412 ~aPIfVPm~~llGi 425 (508)
T PRK11339 412 LAPIFVPMFMLLGF 425 (508)
T ss_pred HHHHHHHHHHHcCC
Confidence 345566666
No 12
>COG5547 Small integral membrane protein [Function unknown]
Probab=65.45 E-value=34 Score=22.11 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=30.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhC
Q 032082 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLG 49 (147)
Q Consensus 2 R~G~k~~~~~~~va~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~ 49 (147)
||.--.+..+++.|.+++++= .--..+++.++.+|+..|+.-+|+
T Consensus 8 kypIIgglvglliAili~t~G---fwKtilviil~~lGv~iGl~~~r~ 52 (62)
T COG5547 8 KYPIIGGLVGLLIAILILTFG---FWKTILVIILILLGVYIGLYKKRT 52 (62)
T ss_pred ccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555556666666666665542 233457788899999999988774
No 13
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=60.74 E-value=39 Score=25.34 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 032082 9 RKTMVATAMLLLVLSGPVKA-LAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60 (147)
Q Consensus 9 ~~~~~va~lll~~l~Gp~~~-l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~ 60 (147)
+.+.++++++-+..=.+-.. ......+-..|+..|+.++|.+|-+.++..=+
T Consensus 156 ~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l~~~i~~H~ 208 (226)
T COG1266 156 LLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSLWVPILLHA 208 (226)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 34556677766666655443 56777777999999999999998887755433
No 14
>PF03591 AzlC: AzlC protein; InterPro: IPR011606 Some proteins in this entry are encoded by a gene, which is a part of the azl operon. This operon is involved in branched-chain amino acid transport []. Overexpression of this gene results in resistance to a leucine analogue, 4-azaleucine. The protein has 5 potential transmembrane motifs.
Probab=59.58 E-value=28 Score=25.73 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHH
Q 032082 30 AYLLTHGVLGFSMGSLWRL-GVDWGLSIFLCTIV 62 (147)
Q Consensus 30 ~~~~~~G~lG~~lG~~~~~-~~s~~~s~~~g~l~ 62 (147)
|..+.|...|+..|.+-++ +.+|+.+...+.++
T Consensus 2 Pi~lg~~~~G~~fG~la~~~G~~~~~~~~mS~lv 35 (143)
T PF03591_consen 2 PIALGYIPFGIAFGVLAVEAGFSWWEAILMSLLV 35 (143)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5677888889999887776 79999999999988
No 15
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=58.48 E-value=1.1e+02 Score=25.57 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH--HHHHHHh--hHHHHHHHHHHHHHHHHHHHcCCCCcch
Q 032082 29 LAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIV--VFASFFL--DFFNHITINIHASLTFIFSAAGVNIVPS 97 (147)
Q Consensus 29 l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~--~~~~s~l--N~~~~~~~~~~~~l~~~~~~lG~~~~p~ 97 (147)
...++..-++|.-..|...|.+++++.+....++ ++.+.++ -=|..+ =.-++.+++....+|..+||.
T Consensus 76 ~~~T~~~lligyP~Ay~la~~~~~~r~~ll~lvilPfwts~LiR~yawi~i-L~~~G~iN~~L~~lGl~~~p~ 147 (287)
T COG1176 76 ALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRTYAWIVI-LGRNGLINQALLALGLIDEPL 147 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCChhhHHHHHcCCCCCcH
Confidence 3344455577888888998887677766655555 5666655 212111 112577888779999887555
No 16
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=56.74 E-value=70 Score=23.72 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHhCCChHHHHHHHH
Q 032082 4 GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHG-VLGFSMGSLWRLGVDWGLSIFLCT 60 (147)
Q Consensus 4 G~k~~~~~~~va~lll~~l~Gp~~~l~~~~~~G-~lG~~lG~~~~~~~s~~~s~~~g~ 60 (147)
+.|++..+..+.++.-.++.+|+ + +..| .+|..+++.+ +++++..++-++.
T Consensus 60 ~s~~~~~ga~iG~IvG~f~~~p~-G----~iiG~~~Ga~l~El~-~~~~~~~A~~~~~ 111 (140)
T PF04306_consen 60 ASRWGIWGAIIGGIVGFFVLPPL-G----LIIGPFLGAFLGELL-RGKDFRRALRAGI 111 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHH-H----HHHHHHHHHHHHHHH-hCCCHHHHHHHHH
Confidence 45666555444444444444443 3 2344 7888999994 4577777776543
No 17
>PRK03001 M48 family peptidase; Provisional
Probab=54.83 E-value=1.2e+02 Score=24.82 Aligned_cols=68 Identities=10% Similarity=0.142 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh--hHHH------HHH----HHHHHHHHHHHHHcCCCC
Q 032082 27 KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFL--DFFN------HIT----INIHASLTFIFSAAGVNI 94 (147)
Q Consensus 27 ~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~~~~~s~l--N~~~------~~~----~~~~~~l~~~~~~lG~~~ 94 (147)
++......++.+.+..|+.+.....|...+..+....+++.++ .++. .+. ...++.++++.++.|.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~p~L~~~v~~la~~~g~~~ 84 (283)
T PRK03001 5 KTAMLMAAITALFIVIGGMIGGSQGMLIALLFALGMNFFSYWFSDKMVLKMYNAQEVDENTAPQFYRMVRELAQRAGLPM 84 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCCEECCccccHHHHHHHHHHHHHcCCCC
Confidence 4444445555555556666665544555555444443333333 1111 111 256777888888888775
No 18
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=54.15 E-value=97 Score=23.67 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=30.3
Q ss_pred cchhHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Q 032082 3 WGVAAGRKTMVATAMLLLVLS-GPVKALAYLLTHGVLGFSMGSLWRLGVDWGLS 55 (147)
Q Consensus 3 ~G~k~~~~~~~va~lll~~l~-Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s 55 (147)
.|..+|.....+++++-..+. |++.+.| .+-+.++.-|+.+||+++.+..
T Consensus 45 lGP~~g~~~a~i~~ll~~l~~~g~~~afp---g~~~~a~laGliyrk~~~~~~a 95 (160)
T TIGR02359 45 LGPWYALAVAFIIGLLRNTLGLGTVLAFP---GGMPGALLAGLLYRFGRKHYWA 95 (160)
T ss_pred HchHHHHHHHHHHHHHHHHhCCCchHHHH---HHHHHHHHHHHHHHHccccHHH
Confidence 366777666666666665432 2433444 4445777888889886655443
No 19
>PRK13661 hypothetical protein; Provisional
Probab=53.07 E-value=1.1e+02 Score=23.88 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhC
Q 032082 3 WGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLG 49 (147)
Q Consensus 3 ~G~k~~~~~~~va~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~ 49 (147)
.|.+.|.....+...+--++.|--.=.++++..|+.|+..|...+|+
T Consensus 51 fGp~~G~lvg~ig~~L~dll~G~~~w~~~ti~~gl~G~i~Gl~~~~~ 97 (182)
T PRK13661 51 FGPVVGFLVGFIGHALKDFIAYGGPWWTWVLASGIIGLIIGLFKKRL 97 (182)
T ss_pred HChHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 36667766666666666565553333456788889999999777653
No 20
>TIGR00346 azlC 4-azaleucine resistance probable transporter AzlC. Overexpression of this gene results in resistance to a leucine analog, 4-azaleucine. The protein has 5 potential transmembrane motifs. It has been inferred, but not experimentally demonstrated, to be part of a branched-chain amino acid transport system. Commonly found in association with azlD.
Probab=51.54 E-value=57 Score=26.08 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHH
Q 032082 27 KALAYLLTHGVLGFSMGSLW-RLGVDWGLSIFLCTIV 62 (147)
Q Consensus 27 ~~l~~~~~~G~lG~~lG~~~-~~~~s~~~s~~~g~l~ 62 (147)
.++|..+.|-+.|++.|... +.+.|||.+...+.++
T Consensus 8 ~~lPi~lgyip~G~afGila~~~Gls~~~a~lmS~~v 44 (221)
T TIGR00346 8 YTIPILAGFLFLGIAYGILMVQLGFDYKYPLFMSLFI 44 (221)
T ss_pred HhChHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46788889999999999885 5579999999999888
No 21
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=50.54 E-value=20 Score=24.41 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhC
Q 032082 24 GPVKALAYLLTHGVLGFSMGSLWRLG 49 (147)
Q Consensus 24 Gp~~~l~~~~~~G~lG~~lG~~~~~~ 49 (147)
-|.+++- +..| +|+.+|++++|+
T Consensus 72 ~P~~svg--iAag-vG~llG~Ll~RR 94 (94)
T PF05957_consen 72 NPWQSVG--IAAG-VGFLLGLLLRRR 94 (94)
T ss_pred ChHHHHH--HHHH-HHHHHHHHHhCC
Confidence 4777743 3334 788899988875
No 22
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=49.03 E-value=72 Score=20.71 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 032082 9 RKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIF 57 (147)
Q Consensus 9 ~~~~~va~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~ 57 (147)
..+.++++++-+..=.+. +.. .+.....|+..|+.+.|.+|-+.++.
T Consensus 37 ~~a~~is~~~f~~~H~~~-~~~-~~~~~~~g~~~~~~~~~t~sl~~~i~ 83 (91)
T PF02517_consen 37 WFAILISSLLFALWHLPN-GPQ-FIYAFLFGLLFGYLYLRTGSLWAAII 83 (91)
T ss_pred HHHHHHHHHHHHHHHHhh-hHH-HHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 345556666555554443 333 67788999999999999988666554
No 23
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.44 E-value=25 Score=25.80 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHhCCCh
Q 032082 27 KALAYLLTHGVLGFSM--GSLWRLGVDW 52 (147)
Q Consensus 27 ~~l~~~~~~G~lG~~l--G~~~~~~~s~ 52 (147)
.++.+.+++|++|+.+ -||.||++++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666666666555 5666654443
No 24
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=48.02 E-value=1.1e+02 Score=23.88 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH
Q 032082 27 KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFL--DFFNHITINIHASLTF 85 (147)
Q Consensus 27 ~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~~~~~s~l--N~~~~~~~~~~~~l~~ 85 (147)
|-...++..-..+...++++||+.+| ......+.+..+++.- |+.....+.-.+.+|+
T Consensus 157 R~~~~~~~~~~~~~~l~~~~r~~~~~-~i~~~~~~~~l~~~~~P~~~~~is~~sQ~~Rl~~ 216 (217)
T PF13687_consen 157 RYYALLLAIFLLIYALYYIFRKRQRW-YIPLSLAILLLLSSFGPLDPFRISVNSQLARLEK 216 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccc-HHHHHHHHHHHHHHhCCCCHHHHhHHHHHHHHhc
Confidence 44444444456778889999888888 1111112222333333 7776555544444443
No 25
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=45.47 E-value=27 Score=23.67 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=28.9
Q ss_pred ccchhHHHHHHHHHHHHHH-HHhhhhH-----------HHHHHHHHHHHHHHHHHHHHhCCC
Q 032082 2 RWGVAAGRKTMVATAMLLL-VLSGPVK-----------ALAYLLTHGVLGFSMGSLWRLGVD 51 (147)
Q Consensus 2 R~G~k~~~~~~~va~lll~-~l~Gp~~-----------~l~~~~~~G~lG~~lG~~~~~~~s 51 (147)
|+|.+.|..+.+.+++.+. ...-|.. -......|=..|+..|++=.|.+.
T Consensus 43 ~~G~~~gl~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~va~v~g~l~~~~r~ 104 (105)
T PF13493_consen 43 RYGLRPGLFAALLSSLLLNFFFFPPPFYDLTFLVYDPQDWITFAVFLVVALVTGYLADRYRR 104 (105)
T ss_dssp HHSS---SHHHHHHHHHHHHTTS-SS----TT-SS-HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhCCCccccchhhcChhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7889999888777776663 3333322 334556666788888888776553
No 26
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=44.79 E-value=1.7e+02 Score=23.64 Aligned_cols=91 Identities=21% Similarity=0.088 Sum_probs=53.7
Q ss_pred hCCChHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 032082 48 LGVDWGLSIFLCTIVVFASFFL-DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFF-VFLLHLLYS 125 (147)
Q Consensus 48 ~~~s~~~s~~~g~l~~~~~s~l-N~~~~~~~~~~~~l~~~~~~lG~~~~p~~~~i~~l~p~liv~~s~i~-~~i~~~va~ 125 (147)
.+.+....+..+.-+-.+.+.+ |+.....+......|+..|+-. ...++.....-+.+..+...+- +|+......
T Consensus 88 sg~~~~~avalAvPv~~lg~~l~~~~~~~n~~~~~~adk~ae~gn---~~~i~~~~~~~~~~~~~~~~v~~~fl~~~~G~ 164 (238)
T PF03609_consen 88 SGQDPEVAVALAVPVGILGQQLDNLLRTINSFFVHRADKAAEEGN---YKKINRIHWIGPILFFLIYFVPPVFLAVYFGS 164 (238)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4445544443333333444444 5444444455667777666554 3456666666666666666666 788778888
Q ss_pred HHHhhhCCCCCCCCcHHHHh
Q 032082 126 VFLTRLGMKASLRLPRWLEM 145 (147)
Q Consensus 126 ~iL~Rlg~~~ip~~Pp~~~~ 145 (147)
...+.+-. .+ |+|+.+
T Consensus 165 ~~v~~~~~-~i---P~~v~~ 180 (238)
T PF03609_consen 165 DAVQALLN-AI---PEWVLN 180 (238)
T ss_pred HHHHHHHH-Hh---hHHHHH
Confidence 88887776 45 556643
No 27
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=44.27 E-value=2.5e+02 Score=25.55 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 032082 30 AYLLTHGVLGFSMGSLWRL 48 (147)
Q Consensus 30 ~~~~~~G~lG~~lG~~~~~ 48 (147)
...+.|-..|+..|..-++
T Consensus 309 ii~~~Fli~givyG~~~g~ 327 (513)
T TIGR00819 309 FIFLFFALPGIAYGIATRS 327 (513)
T ss_pred HHHHHHHHHHHHHHhhcCc
Confidence 4567788899999998884
No 28
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=43.52 E-value=91 Score=20.30 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=28.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHH
Q 032082 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYL----LTHGVLGFSMGSL 45 (147)
Q Consensus 2 R~G~k~~~~~~~va~lll~~l~Gp~~~l~~~----~~~G~lG~~lG~~ 45 (147)
|...|.. .+.+.+-+-+.-+.+-++++.+- +.||...+..|-.
T Consensus 3 r~~~Riv-lAtiavFiaLagl~~~I~GlLfD~~~~~~yg~~al~~Gv~ 49 (62)
T PF11177_consen 3 RSEYRIV-LATIAVFIALAGLAAVIHGLLFDEERVFRYGVIALVVGVA 49 (62)
T ss_pred cchhHHH-HHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHH
Confidence 4555555 44455555567778888887765 7888887777743
No 29
>PF01219 DAGK_prokar: Prokaryotic diacylglycerol kinase; InterPro: IPR000829 Diacylglycerol kinase (2.7.1.107 from EC) (DAGK) is an enzyme that catalyses the formation of phosphatidic acid from diacylglycerol and ATP, an important step in phospholipid biosynthesis. In bacteria DAGK is very small (13 to 15 kD) membrane protein which seems to contain three transmembrane domains []. The best conserved region, is a stretch of 12 residues which are located in a cytoplasmic loop between the second and third transmembrane domains.; GO: 0004143 diacylglycerol kinase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2KDC_B.
Probab=42.69 E-value=1.2e+02 Score=21.40 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=41.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHHh--hH-----------HHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Q 032082 44 SLWRLGVDWGLSIFLCTIVVFASFFL--DF-----------FNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVL 110 (147)
Q Consensus 44 ~~~~~~~s~~~s~~~g~l~~~~~s~l--N~-----------~~~~~~~~~~~l~~~~~~lG~~~~p~~~~i~~l~p~liv 110 (147)
+++|+++|-..=+..+.++..++.++ |. .....+.+...+|...+..+-+..|.....+-++-..++
T Consensus 10 ~a~~~E~~fr~~~~~~~~v~~~~~~l~~s~~ew~~li~~~~~Vl~~EllNTAIE~~vD~v~~~~~~~ak~aKD~aAaAVl 89 (104)
T PF01219_consen 10 FAFRTERNFRIHLVAAVLVLIAAFFLGLSPWEWALLILAIFLVLIAELLNTAIERLVDLVSPEYHPLAKRAKDIAAAAVL 89 (104)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHTHHHHHHHHHTT----S-TTSHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcchhhcHHHHHHHHHHHHHHH
Confidence 45566666555555555554444443 11 112223334555666666775556888888888888877
Q ss_pred HHHHHHHHHH
Q 032082 111 LNSGFFVFLL 120 (147)
Q Consensus 111 ~~s~i~~~i~ 120 (147)
+.++..+.+-
T Consensus 90 v~~i~a~~v~ 99 (104)
T PF01219_consen 90 VAAIFAVIVG 99 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776665543
No 30
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=40.36 E-value=1.7e+02 Score=22.64 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 032082 111 LNSGFFVFLLHLLYSVFLTRLGMKASL 137 (147)
Q Consensus 111 ~~s~i~~~i~~~va~~iL~Rlg~~~ip 137 (147)
+..++...++|+..-.+.-|+|.|++|
T Consensus 148 ~~~~ilt~~lH~~~N~i~Y~LglK~vp 174 (175)
T PF01864_consen 148 IIILILTPLLHLGTNIIAYKLGLKKVP 174 (175)
T ss_pred HhHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 345667788999999999999998666
No 31
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=39.90 E-value=1.9e+02 Score=25.08 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 032082 80 HASLTFIFSAAGVNIVPSMNVIYVIFGT-----LVLLNSGFFVFLLHLLYSVFLTRLGMKASL 137 (147)
Q Consensus 80 ~~~l~~~~~~lG~~~~p~~~~i~~l~p~-----liv~~s~i~~~i~~~va~~iL~Rlg~~~ip 137 (147)
.+++.+.+++....+-|..+.++..-|. ..++-..+|.-.+|..+. .=+|+.. +.|
T Consensus 230 nlsLi~~~~~v~~~dIP~l~i~~~~~~~i~lvm~vIi~~~IytT~vg~iy~-l~~r~~s-~~~ 290 (349)
T COG3949 230 NLSLIALYDKVVNYDIPLLTIAKNFSPLIGLVMSVIIWLEIYTTTVGLIYG-LASRLTS-FFP 290 (349)
T ss_pred HHHHHhhcchhhccCCcHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcc-cCC
Confidence 4666666777777777888888777776 455666777778888777 6677776 344
No 32
>PRK03982 heat shock protein HtpX; Provisional
Probab=39.08 E-value=2.1e+02 Score=23.32 Aligned_cols=17 Identities=6% Similarity=0.014 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHcCCCC
Q 032082 78 NIHASLTFIFSAAGVNI 94 (147)
Q Consensus 78 ~~~~~l~~~~~~lG~~~ 94 (147)
..++.+|++.++.|++.
T Consensus 69 ~L~~~v~~la~~~g~~~ 85 (288)
T PRK03982 69 ELYRIVERLAERANIPK 85 (288)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 46778888888888764
No 33
>PF15050 SCIMP: SCIMP protein
Probab=37.79 E-value=78 Score=23.47 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 032082 99 NVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGM 133 (147)
Q Consensus 99 ~~i~~l~p~liv~~s~i~~~i~~~va~~iL~Rlg~ 133 (147)
+-++.++-+.+++.|+...+++|-+.++.||+=+.
T Consensus 6 ~nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 6 DNFWIILAVAIILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34567777789999999999999999999987654
No 34
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=37.24 E-value=2.4e+02 Score=23.43 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhCCChHHHHHHHHHHH-HHHHHhhHHHHH--HHHHHHHHHHHHHHcCCCCcchHHH
Q 032082 27 KALAYLLTHGVLGFSMGSL---WRLGVDWGLSIFLCTIVV-FASFFLDFFNHI--TINIHASLTFIFSAAGVNIVPSMNV 100 (147)
Q Consensus 27 ~~l~~~~~~G~lG~~lG~~---~~~~~s~~~s~~~g~l~~-~~~s~lN~~~~~--~~~~~~~l~~~~~~lG~~~~p~~~~ 100 (147)
......+..|+.+..+=+. .+++.++.+.+..|..+- .+++..+.+... .++..+...|.+-++. +.+-+.
T Consensus 101 ~~~~~a~iGal~~~~lv~~l~~~~~~~~~~~liL~Gi~i~~~~~al~~~l~~~~~~~~~~~~~~wl~Gsl~---~~~~~~ 177 (311)
T PF01032_consen 101 GLPLFAFIGALLALLLVYLLSKRRGGFSPLRLILAGIAISALFSALTSFLLLLANPESLQSVQFWLMGSLS---GASWEQ 177 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHT-TTT--HHHHHHHHHHHHHHHHHHHHHHHHTCTCCHHHHHHHHCC--ST---T-SHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhccccc---cccchh
Confidence 3334444455555444443 458888899888888773 333332433322 1233444444444443 445555
Q ss_pred HHHHHHHHHHH
Q 032082 101 IYVIFGTLVLL 111 (147)
Q Consensus 101 i~~l~p~liv~ 111 (147)
+....|..++.
T Consensus 178 ~~~~~~~~~i~ 188 (311)
T PF01032_consen 178 LYILLPLLLIG 188 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56655555444
No 35
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=33.68 E-value=2.1e+02 Score=21.60 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=30.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHH-HHHHHHHh
Q 032082 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLL--THGVLGF-SMGSLWRL 48 (147)
Q Consensus 2 R~G~k~~~~~~~va~lll~~l~Gp~~~l~~~~--~~G~lG~-~lG~~~~~ 48 (147)
.+|.|.++...+.=.++-+++.|.+.+..+.+ .=|+... +|..++|.
T Consensus 39 ~~g~~~a~~v~~lR~~l~~l~~G~~~s~~f~~Sl~Ggl~S~~vM~ll~~~ 88 (148)
T PF07456_consen 39 LLGFKEALLVALLRILLGSLLFGTLFSPSFLFSLAGGLLSLLVMALLKKL 88 (148)
T ss_pred HcChhHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46888887777777888899999986643333 3334443 44444444
No 36
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=33.18 E-value=1.9e+02 Score=23.58 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHH
Q 032082 26 VKALAYLLTHGVLGFSMGSLW-RLGVDWGLSIFLCTIV 62 (147)
Q Consensus 26 ~~~l~~~~~~G~lG~~lG~~~-~~~~s~~~s~~~g~l~ 62 (147)
..++|..+.|-..|++.|..- .++.|++.+...+.++
T Consensus 17 ~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~~e~~lmS~~i 54 (238)
T COG1296 17 KASLPILLGYLPIGLAFGLLAVALGFSPLEAILMSLLI 54 (238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 355667777777888888776 7789999999999888
No 37
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=33.12 E-value=1.7e+02 Score=23.41 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 032082 33 LTHGVLGFSMGSLWRLGVDWGLSIFLCTIV 62 (147)
Q Consensus 33 ~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~ 62 (147)
+..++.|+.+|+.++|.+|-+.++.+=++.
T Consensus 176 ~~~~l~Gli~~~l~~~tgsL~~~I~~H~~~ 205 (222)
T TIGR03008 176 VAGLIAGLAYNLLLLRTGSIMACILAHAVT 205 (222)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 345667999999999998888777654443
No 38
>COG3856 Sbp Uncharacterized conserved protein (small basic protein) [Function unknown]
Probab=32.41 E-value=1.2e+02 Score=21.80 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHh----CCChHHHHHHHHHH------------------HHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCC
Q 032082 37 VLGFSMGSLWRL----GVDWGLSIFLCTIV------------------VFASFFL-DFFNHITINIHASLTFIFSAAGVN 93 (147)
Q Consensus 37 ~lG~~lG~~~~~----~~s~~~s~~~g~l~------------------~~~~s~l-N~~~~~~~~~~~~l~~~~~~lG~~ 93 (147)
++|+.+|-.|.- +.|++.++..=+.. +++|+++ |.+. ..++...=+++|.+
T Consensus 9 ~iGI~lGlv~n~~vPd~~spYlsiAv~AaLDtvfGgiRA~L~~~fd~~vFvsgFffNiil------A~~lvylGd~LGv~ 82 (113)
T COG3856 9 LIGIVLGLVFNPGVPDVYSPYLSIAVLAALDTVFGGIRAYLQRTFDPKVFVSGFFFNIIL------AASLVYLGDQLGVD 82 (113)
T ss_pred HHHHHHhhhcCCCCchhhccchHHHHHHHHHHHHHHHHHHHHhhcCCCeeehHHHHHHHH------HHHHHHHhhhcCcc
Confidence 678888888875 45788887754433 3666666 7653 34555555677866
No 39
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.82 E-value=1.7e+02 Score=22.04 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032082 27 KALAYLLTHGVLGFSMG 43 (147)
Q Consensus 27 ~~l~~~~~~G~lG~~lG 43 (147)
.+..+...-|...+++|
T Consensus 33 l~~~~s~~lg~~~lAlg 49 (191)
T PF04156_consen 33 LGALISFILGIALLALG 49 (191)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33333333444444333
No 40
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=31.25 E-value=71 Score=23.55 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC
Q 032082 112 NSGFFVFLLHLLYSVFLTRLGM 133 (147)
Q Consensus 112 ~s~i~~~i~~~va~~iL~Rlg~ 133 (147)
.+++.+.....+..|++||+|.
T Consensus 23 ~~L~lVl~lI~~~aWLlkR~~~ 44 (124)
T PRK11486 23 GALIGIIALILAAAWLVKRLGF 44 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 3444455566667799999986
No 41
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=29.56 E-value=80 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=28.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhCCChHH
Q 032082 22 LSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGL 54 (147)
Q Consensus 22 l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~ 54 (147)
+.-|.....++++++.....+|+.||++.....
T Consensus 4 liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~ 36 (175)
T PF13301_consen 4 LIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQEN 36 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 456888888889999999999999999887666
No 42
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=29.53 E-value=28 Score=24.70 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=8.5
Q ss_pred CCCcHHHHhhC
Q 032082 137 LRLPRWLEMAL 147 (147)
Q Consensus 137 p~~Pp~~~~~~ 147 (147)
-+|||||+++.
T Consensus 109 ~~~~~w~~~~~ 119 (119)
T TIGR02663 109 GNPPPWLRKAL 119 (119)
T ss_pred CCCCHHHHhhC
Confidence 36899999863
No 43
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=29.34 E-value=4.4e+02 Score=23.97 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHH--HHHH--------HHHHHHh-hHHHH--HHHHHHHHHHHHHHHcCCCCcc
Q 032082 30 AYLLTHGVLGFSMGSLWRLGVDWGLSIFL--CTIV--------VFASFFL-DFFNH--ITINIHASLTFIFSAAGVNIVP 96 (147)
Q Consensus 30 ~~~~~~G~lG~~lG~~~~~~~s~~~s~~~--g~l~--------~~~~s~l-N~~~~--~~~~~~~~l~~~~~~lG~~~~p 96 (147)
...+.|.+.|++.|..=.+=||.....-. -++- .++.+.+ +.++. +-+.+.-.-.+.+|++|.+..
T Consensus 302 iI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~~- 380 (502)
T PF03806_consen 302 IIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPGI- 380 (502)
T ss_pred HHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCcH-
Confidence 45678889999999998887777665432 1111 1222222 22210 111112222234677887743
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032082 97 SMNVIYVIFGTLVLLNSGFFVFLLHLLYSV 126 (147)
Q Consensus 97 ~~~~i~~l~p~liv~~s~i~~~i~~~va~~ 126 (147)
.+...++++.+++..|+.-.-++|
T Consensus 381 ------~l~i~fill~a~iNLfi~S~SaKW 404 (502)
T PF03806_consen 381 ------PLIIGFILLTAFINLFIGSASAKW 404 (502)
T ss_pred ------HHHHHHHHHHHHHHHhhhcchhhH
Confidence 245567777888888776655554
No 44
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=28.69 E-value=1.3e+02 Score=21.05 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 032082 27 KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIV 62 (147)
Q Consensus 27 ~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~ 62 (147)
+-..=.+.|.++|..+.+.++|.++++.++..|.+.
T Consensus 53 ~~~~hi~~f~plG~l~~~~~~~~~~~~~~~~~~~~~ 88 (133)
T PF04892_consen 53 DKIGHILLFFPLGFLLPLLFRRLRSWLLAILIGFLF 88 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 445556788889999999999877778777777654
No 45
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=28.66 E-value=1.1e+02 Score=23.96 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh---hHHHHHH
Q 032082 23 SGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFL---DFFNHIT 76 (147)
Q Consensus 23 ~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~~~~~s~l---N~~~~~~ 76 (147)
.-|..+...++.||.+.+..|.--.-|+++-......+++...|+++ |+++.+.
T Consensus 49 km~l~s~~~v~vFG~lTl~f~~d~FIKwK~TIi~~lFa~~Llgs~~~~~k~lik~~l 105 (180)
T COG2917 49 KMQLISGVVVVVFGGLTLIFHNDTFIKWKPTIIYWLFALVLLGSQFLFKKPLIKRML 105 (180)
T ss_pred HHHHHHHHHHHHhchhHhhccCcceEEeeHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 35777778888888888888888888888888887878777776766 6665443
No 46
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=28.65 E-value=1.2e+02 Score=20.17 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhCC
Q 032082 97 SMNVIYVIFGTLVLLN-SGFFVFLLHLLYSVFLTRLGM 133 (147)
Q Consensus 97 ~~~~i~~l~p~liv~~-s~i~~~i~~~va~~iL~Rlg~ 133 (147)
|.+.++++...+.+++ +.....+.|+++..++++--.
T Consensus 28 d~tlVRll~vl~~~~~~~~~~~ii~Yiia~~imP~~~~ 65 (70)
T COG1983 28 DPTLVRLLFVLLTLFGGLTGFGIIAYIIAALIMPSEED 65 (70)
T ss_pred ChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHCCCCcc
Confidence 3678888888888888 677788999999999876543
No 47
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=28.00 E-value=3.3e+02 Score=22.14 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHH
Q 032082 37 VLGFSMGSLWRLGVDWGLSIFLCTIV 62 (147)
Q Consensus 37 ~lG~~lG~~~~~~~s~~~s~~~g~l~ 62 (147)
++|+.++|...|+++|+++..-+-+.
T Consensus 25 ~lgi~~a~~Lar~~~~~k~ll~~lv~ 50 (225)
T COG4149 25 PLGIALAYLLARRRFRGKSLLESLVL 50 (225)
T ss_pred HHHHHHHHHHHcccCCcchHHHHHHH
Confidence 67889999999999999999887666
No 48
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=26.89 E-value=2.1e+02 Score=21.30 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=23.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 032082 20 LVLSGPVKALAYLLTHGVLGFSMGSLWRLGVD 51 (147)
Q Consensus 20 ~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s 51 (147)
..+.||.-+ |.+.|-+.....|+.-+|+++
T Consensus 53 ~~l~gPTgG--yl~gf~~~a~i~g~~~~~~~~ 82 (148)
T PF02632_consen 53 GYLLGPTGG--YLLGFPLAALIIGLLAERLKR 82 (148)
T ss_pred HHHhcCCCh--HHHHHHHHHHHHHHHHHhccc
Confidence 356778777 777788888999999988654
No 49
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=26.80 E-value=3.5e+02 Score=22.04 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032082 81 ASLTFIFSAAGVNIVPS---MNVIYVIFGTLVLLNSGFFVFLLHLLYS 125 (147)
Q Consensus 81 ~~l~~~~~~lG~~~~p~---~~~i~~l~p~liv~~s~i~~~i~~~va~ 125 (147)
...-..+..+|.+..|+ ...+-.+.|...+.|++...+--|+++.
T Consensus 186 ~~~a~~~~~~~~~~~~~~~i~~si~~lvPG~~l~nav~dl~~g~~~~G 233 (250)
T COG2966 186 SIVAVLFGSLGLGITPDALIIGSIMLLVPGVPLTNAVRDLLSGHLVAG 233 (250)
T ss_pred HHHHHHHHHccccCCchHHHHHHHHHHcCchHHHHHHHHHHcCcchHH
Confidence 33344455566666666 4445666777999999999888887764
No 50
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=26.62 E-value=93 Score=23.38 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 032082 101 IYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGM 133 (147)
Q Consensus 101 i~~l~p~liv~~s~i~~~i~~~va~~iL~Rlg~ 133 (147)
...-.....++.+++.+.......-|++||++.
T Consensus 18 ~~~~~~~~~~~gsL~~iL~lil~~~wl~kr~~~ 50 (137)
T COG3190 18 ASAALELAQMFGSLILILALILFLAWLVKRLGR 50 (137)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344566778888888999999999999995
No 51
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=26.36 E-value=2.3e+02 Score=23.87 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=28.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH--HHHHH
Q 032082 20 LVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIF--LCTIV 62 (147)
Q Consensus 20 ~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~--~g~l~ 62 (147)
+...| ..-...+...+.|..+|++|++ +.|.+.++ +||..
T Consensus 182 ~~~~~--~~~~~~~~~al~ga~LGFL~~N-~~PAkIFmGDtGSl~ 223 (319)
T COG0472 182 ALLQG--LGELALICAALAGACLGFLWFN-FYPAKIFMGDTGSLA 223 (319)
T ss_pred HHHhc--chhHHHHHHHHHHHHHHHHHhc-CChhhhcCCchhhHH
Confidence 44444 4444566777899999999998 67777776 66666
No 52
>PF07869 DUF1656: Protein of unknown function (DUF1656); InterPro: IPR012451 The proteins in this entry have no known function and belong to the AaeX family.
Probab=25.33 E-value=1.7e+02 Score=18.31 Aligned_cols=40 Identities=30% Similarity=0.558 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCcHHHHhh
Q 032082 105 FGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMA 146 (147)
Q Consensus 105 ~p~liv~~s~i~~~i~~~va~~iL~Rlg~~~ip~~Pp~~~~~ 146 (147)
.|.+++. .+-+++..++-.++++|.|....-.-|++.+.+
T Consensus 10 ~P~ll~~--~~~A~~l~~~l~~ll~r~~~~r~vWhp~Lf~la 49 (58)
T PF07869_consen 10 FPPLLVY--ALLALLLTLLLRRLLARLGLYRFVWHPALFDLA 49 (58)
T ss_pred HhHHHHH--HHHHHHHHHHHHHHHHHhCcccccccHHHHHHH
Confidence 4554443 345678888999999999984466667776643
No 53
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=25.16 E-value=2.3e+02 Score=19.42 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 032082 36 GVLGFSMGSLWRLGVDWGLSIFLCTIV 62 (147)
Q Consensus 36 G~lG~~lG~~~~~~~s~~~s~~~g~l~ 62 (147)
+..|...|++.+| .+....+..|...
T Consensus 6 ~~~G~~~G~~~kK-~~k~~a~~~G~~~ 31 (100)
T PF04930_consen 6 SVSGLCAGYAIKK-VSKLAAFLVGGGF 31 (100)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3789999999998 6666666666555
No 54
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=24.54 E-value=2e+02 Score=20.93 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=30.5
Q ss_pred HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 032082 87 FSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLG 132 (147)
Q Consensus 87 ~~~lG~~~~p~~~~i~~l~p~liv~~s~i~~~i~~~va~~iL~Rlg 132 (147)
.+.+|++ ..++.+++..+.++.....+++.|++.+.+++.-.
T Consensus 21 A~y~gi~----~~~VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p 62 (121)
T TIGR02978 21 ADYFGVE----VWLVRILVVSALLFGGGFFVLVAYIALWLLLDKKP 62 (121)
T ss_pred HHHHCcC----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence 3445544 46778888777777776677778999999998753
No 55
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=24.52 E-value=2.9e+02 Score=21.70 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh--hHHH
Q 032082 34 THGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFL--DFFN 73 (147)
Q Consensus 34 ~~G~lG~~lG~~~~~~~s~~~s~~~g~l~~~~~s~l--N~~~ 73 (147)
..|+.-++.+.-.|++.+|+..+..|.+...++..+ ||..
T Consensus 113 ~~GI~ri~~~~~~~~~~G~~w~ii~Gvl~ii~g~ill~~P~~ 154 (185)
T COG3247 113 ASGILRIVVAFRLRSLPGWWWMIISGVLGIIAGLILLFNPVA 154 (185)
T ss_pred HHHHHHHHHHHHccccCCcHHHHHHHHHHHHHHHHHHHccHh
Confidence 456777788888999999999999999987776666 6653
No 56
>PRK09928 choline transport protein BetT; Provisional
Probab=23.96 E-value=6.2e+02 Score=23.93 Aligned_cols=20 Identities=10% Similarity=-0.056 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhCCCh
Q 032082 33 LTHGVLGFSMGSLWRLGVDW 52 (147)
Q Consensus 33 ~~~G~lG~~lG~~~~~~~s~ 52 (147)
-.|++.|+.+||+.+|++.|
T Consensus 154 AiYalvglalAYf~yr~~~p 173 (679)
T PRK09928 154 SMYALMGMALGYFSYRYNLP 173 (679)
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 35899999999999988888
No 57
>TIGR00271 uncharacterized hydrophobic domain. This domain is in a family of archaeal proteins that includes AF0785 of Archaeoglobus fulgidus and in several eubacterial proteins, including the much longer protein sll1151 from Synechocystis PCC6803.
Probab=23.91 E-value=2.3e+02 Score=21.92 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhHHHH
Q 032082 11 TMVATAMLLLVLSGPVKALA 30 (147)
Q Consensus 11 ~~~va~lll~~l~Gp~~~l~ 30 (147)
..++.+++++=+|||+.+.-
T Consensus 28 avIIGAMlIaPLmgPi~a~a 47 (175)
T TIGR00271 28 VLIIGAMIIAPLLGPIAGSA 47 (175)
T ss_pred HHHHHHHHHHHhHhHHHHHH
Confidence 34688899999999988873
No 58
>COG3702 VirB3 Type IV secretory pathway, VirB3 components [Intracellular trafficking and secretion]
Probab=23.13 E-value=1.6e+02 Score=21.15 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=24.9
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Q 032082 90 AGVNIVPSMNVIYVIFGTLVLLNSGFFVFL---LHLLYSVFLTR 130 (147)
Q Consensus 90 lG~~~~p~~~~i~~l~p~liv~~s~i~~~i---~~~va~~iL~R 130 (147)
+|.+-++.---+-......+..+++.|.++ +|.+++.+-+|
T Consensus 21 ~GVp~e~a~~~~m~t~ivfl~~~~~l~l~I~~~lh~v~~i~~~~ 64 (105)
T COG3702 21 LGVPYEAAVFNGMLTGIVFLIVNNPLYLLIAVPLHAVARIIVKR 64 (105)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcc
Confidence 455544443333444555777888888765 67777766443
No 59
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=22.67 E-value=3.8e+02 Score=20.94 Aligned_cols=60 Identities=10% Similarity=-0.090 Sum_probs=37.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-hHHH
Q 032082 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFL-DFFN 73 (147)
Q Consensus 2 R~G~k~~~~~~~va~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~~~~~s~l-N~~~ 73 (147)
.+++|.++.+-+++.+.+.++ |+ ..++..-.++||-+++|.-+.-|.+--.+.+.+ |++-
T Consensus 60 ~g~wk~t~~G~~igi~~~gv~-----Si-------~aAllY~~~l~k~~g~W~Gi~YG~~~W~ivF~~lnP~f 120 (173)
T PF11085_consen 60 LGDWKNTWLGNLIGIVFIGVF-----SI-------VAALLYYALLKKFKGPWPGILYGLAWWAIVFFVLNPIF 120 (173)
T ss_pred ccchhhhhHHHHHHHHHHHHH-----HH-------HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcccc
Confidence 467777777744444333322 23 223444567899999999999998875444444 6653
No 60
>PRK13751 putative mercuric transport protein; Provisional
Probab=22.42 E-value=2.6e+02 Score=20.32 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 032082 27 KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLC 59 (147)
Q Consensus 27 ~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g 59 (147)
.+...++.+|.-|.++|.+= ...+++.+..+
T Consensus 26 ~~Pllll~~Gvsgaw~~~l~--~lepyr~~fi~ 56 (116)
T PRK13751 26 LGPLVLIALGFSGAWIGNLT--VLEPYRPIFIG 56 (116)
T ss_pred HHHHHHHHHcchHHHHHHHH--HHHHHHHHHHH
Confidence 44456778899999888653 23455555544
No 61
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=22.37 E-value=2.1e+02 Score=24.45 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhhHHH
Q 032082 11 TMVATAMLLLVLSGPVKAL 29 (147)
Q Consensus 11 ~~~va~lll~~l~Gp~~~l 29 (147)
..++.+++++=+|||+.++
T Consensus 137 avIIGAMlIaPlmgPi~a~ 155 (325)
T TIGR00341 137 VILIGAMIIAPLLGPIHGF 155 (325)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3467888888888888776
No 62
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=21.96 E-value=3.6e+02 Score=22.54 Aligned_cols=28 Identities=7% Similarity=0.025 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcch
Q 032082 70 DFFNHITINIHASLTFIFSAAGVNIVPS 97 (147)
Q Consensus 70 N~~~~~~~~~~~~l~~~~~~lG~~~~p~ 97 (147)
|-.+...+.+....|+..+.+|.++-+.
T Consensus 156 r~v~~~~~~id~~~EeaA~sLGas~~~t 183 (274)
T COG0555 156 RTVQPVLEEIDREYEEAARSLGASPLQT 183 (274)
T ss_pred HHHHHHHHhccHHHHHHHHhcCCCccee
Confidence 4455555555667777788899876443
No 63
>TIGR03426 shape_MreD rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples.
Probab=21.95 E-value=3.1e+02 Score=19.73 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=34.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032082 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRL 48 (147)
Q Consensus 2 R~G~k~~~~~~~va~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~ 48 (147)
++|.|.+.......|++.=.+.|...+. .++.+.+.|...|..-||
T Consensus 44 ~~~~~~~~~~~f~~Gll~D~~~~~~lG~-~al~~~l~~~~~~~~~~~ 89 (154)
T TIGR03426 44 ALPHRVGIGTAFVLGLLQDVLSGSPLGV-HALALSLVAYLAASKFQR 89 (154)
T ss_pred hcccccchHHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHHHHHHH
Confidence 4567777777788899998888877775 777888888888766443
No 64
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=21.66 E-value=6.1e+02 Score=22.96 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhCCChH
Q 032082 33 LTHGVLGFSMGSLWRLGVDWG 53 (147)
Q Consensus 33 ~~~G~lG~~lG~~~~~~~s~~ 53 (147)
-.|++.|+.+||..+||+.+.
T Consensus 148 aiY~~~~la~ay~~y~~~~p~ 168 (504)
T PRK03356 148 ATYSFLSVAFGYFFFVRKMDV 168 (504)
T ss_pred HHHHHHHHHHHHHHHhcCCCc
Confidence 358899999999999988885
No 65
>PRK09921 permease DsdX; Provisional
Probab=21.59 E-value=5.7e+02 Score=22.59 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 032082 39 GFSMGSLWRLGVDWGLSIFLCTIVV 63 (147)
Q Consensus 39 G~~lG~~~~~~~s~~~s~~~g~l~~ 63 (147)
.+.+-...|.|++++.++..+++++
T Consensus 16 ~~l~~li~k~k~~~f~aLl~~ai~~ 40 (445)
T PRK09921 16 VLIVLTIVKFKFHPFLALLLASFFV 40 (445)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6667778899999999999998883
No 66
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=21.03 E-value=1e+02 Score=24.06 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCh
Q 032082 30 AYLLTHGVLGFSMGSLWRLGVDW 52 (147)
Q Consensus 30 ~~~~~~G~lG~~lG~~~~~~~s~ 52 (147)
..++.+.++|+.+||++++...-
T Consensus 4 i~~i~~~~vG~~~G~~~~~~~~~ 26 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVRKKINR 26 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678899999999774433
No 67
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=21.03 E-value=4.1e+02 Score=20.75 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 032082 19 LLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVD 51 (147)
Q Consensus 19 l~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s 51 (147)
+..+.||.-+ |.+.|-+.....|+.-+|.++
T Consensus 81 i~~~~GPTgG--yL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 81 IAVLFGPTGG--YLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred eeeeecCchh--HHHHHHHHHHHHHHHHHhhhc
Confidence 3456788877 777788888999999877765
No 68
>PRK11089 PTS system glucose-specific transporter subunits IIBC; Provisional
Probab=20.73 E-value=6.2e+02 Score=22.72 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHH----------HHHHHHh-hHHHHHHHHH-HHHHHHHHHHcCCCC--
Q 032082 32 LLTHGVLGFSMGSLWRLGVD---WGLSIFLCTIV----------VFASFFL-DFFNHITINI-HASLTFIFSAAGVNI-- 94 (147)
Q Consensus 32 ~~~~G~lG~~lG~~~~~~~s---~~~s~~~g~l~----------~~~~s~l-N~~~~~~~~~-~~~l~~~~~~lG~~~-- 94 (147)
.-+||..|.+++...+-|++ ....++.++.+ .-.++.+ -|+-+...+. ++..-.+..-+|...
T Consensus 256 ~~~fglpgaalA~y~~ak~~~kk~vk~l~~sa~lta~ltGITEPieF~FlFvaP~Ly~vHa~l~Gl~~~i~~~~~v~ig~ 335 (477)
T PRK11089 256 FKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGT 335 (477)
T ss_pred HHHhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCeeec
Confidence 66899999999887766555 66666655555 1333434 4444455543 333333444444321
Q ss_pred --c-chHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 032082 95 --V-PSMNVIYV----IFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASL 137 (147)
Q Consensus 95 --~-p~~~~i~~----l~p~liv~~s~i~~~i~~~va~~iL~Rlg~~~ip 137 (147)
+ --+|++-. .-.-+++..+++|..+-|.+-+...+|+.. +.|
T Consensus 336 ~fs~G~iD~~~~~~~~~~~~~~~~vGi~~~~iYy~vF~f~I~k~nl-~TP 384 (477)
T PRK11089 336 SFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDL-KTP 384 (477)
T ss_pred ccCCCceeeeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHcCC-CCC
Confidence 1 11221100 112267788899999999999999999998 465
No 69
>PRK09459 pspG phage shock protein G; Reviewed
Probab=20.60 E-value=2.8e+02 Score=18.74 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=16.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 032082 16 AMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGV 50 (147)
Q Consensus 16 ~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~ 50 (147)
+.+.-++-|=.--...++|.=++.++-=|.||+.+
T Consensus 31 a~~vM~l~Gm~~lviKLLPWLil~~v~vW~~r~~~ 65 (76)
T PRK09459 31 ATLVMFLGGMFALMIKLLPWLLLAVVVVWVIRAIK 65 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333334445555555555556666543
No 70
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=20.01 E-value=3.5e+02 Score=22.04 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhCCChHHHHH
Q 032082 35 HGVLGFSMGSLWRLGVDWGLSIF 57 (147)
Q Consensus 35 ~G~lG~~lG~~~~~~~s~~~s~~ 57 (147)
..++..+..++.|.++++.....
T Consensus 57 ~~~l~~~~~~~~r~~~k~~l~l~ 79 (244)
T PRK10699 57 HVLLCGWFLWCLRFRLKAALVLF 79 (244)
T ss_pred HHHHHHHHHHHHHhchhHHHHHH
Confidence 33445555677777777766544
Done!