Query 032082
Match_columns 147
No_of_seqs 101 out of 124
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 95.2 0.53 1.8E-05 35.4 12.4 57 2-58 57-115 (189)
2 3rlb_A THIT; S-component, ECF 94.6 0.02 6.8E-07 44.0 2.9 49 2-52 60-115 (192)
3 4dve_A Biotin transporter BIOY 30.1 1.7E+02 0.0059 21.9 8.2 29 20-50 93-121 (198)
4 2kdc_A Diacylglycerol kinase; 29.1 1.4E+02 0.0049 20.6 9.8 91 29-121 10-113 (121)
5 1z67_A Hypothetical protein S4 20.4 1.4E+02 0.0047 21.2 4.3 46 64-109 50-104 (135)
6 3ci9_A Heat shock factor-bindi 18.7 1.6E+02 0.0053 17.2 3.9 24 66-89 8-32 (48)
7 4g1u_A Hemin transport system 16.5 4.3E+02 0.015 21.4 10.4 76 32-110 146-226 (357)
8 2ks1_B Epidermal growth factor 14.2 1.8E+02 0.0061 16.6 3.0 15 37-51 26-40 (44)
9 2l2t_A Receptor tyrosine-prote 12.7 2E+02 0.0069 16.5 2.9 15 37-51 25-39 (44)
10 1iij_A ERBB-2 receptor protein 11.8 94 0.0032 17.1 1.2 14 37-50 22-35 (35)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=95.20 E-value=0.53 Score=35.37 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=39.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 032082 2 RWGVAAGRKTMVATAMLLLVLSG--PVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFL 58 (147)
Q Consensus 2 R~G~k~~~~~~~va~lll~~l~G--p~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~ 58 (147)
..|.++|.....+.+++-.++.| |+-.+.-.+..+..|+.-|+.+||++++...+.+
T Consensus 57 ~~Gp~~g~~~~~l~~ll~~l~~g~~~~g~~~~~l~~~~~g~~~~~~y~k~~~~~~~~~~ 115 (189)
T 3p5n_A 57 TFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITG 115 (189)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHSSSCSHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 46899997776666666655543 5444444566678888889999998887765543
No 2
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=94.59 E-value=0.02 Score=43.97 Aligned_cols=49 Identities=27% Similarity=0.387 Sum_probs=36.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhh------hHH-HHHHHHHHHHHHHHHHHHHhCCCh
Q 032082 2 RWGVAAGRKTMVATAMLLLVLSGP------VKA-LAYLLTHGVLGFSMGSLWRLGVDW 52 (147)
Q Consensus 2 R~G~k~~~~~~~va~lll~~l~Gp------~~~-l~~~~~~G~lG~~lG~~~~~~~s~ 52 (147)
|+|.|+|....++.+++ .++.|+ +.. +.+.+.|+.+|++ |+.++|+++.
T Consensus 60 ~~Gp~~G~~~g~i~gll-~~i~g~~~~~~p~q~lldy~laf~~~Gla-G~f~~~~~~~ 115 (192)
T 3rlb_A 60 RRGLTAGLVGGLIWGIL-SMITGHAYILSLSQAFLEYLVAPVSLGIA-GLFRQKTAPL 115 (192)
T ss_dssp HHCHHHHHHHHHHHHHH-HHHTTCSCCSSHHHHHHHHTHHHHHGGGG-GGGCCCSSSC
T ss_pred HHChHHHHHHHHHHHHH-HHHhCCccccchHHHHHHHHHHHHHHHHH-Hhheeccccc
Confidence 89999997776665554 555653 322 5678899999998 9988887664
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=30.12 E-value=1.7e+02 Score=21.86 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=21.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 032082 20 LVLSGPVKALAYLLTHGVLGFSMGSLWRLGV 50 (147)
Q Consensus 20 ~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~ 50 (147)
..+.||.-+ |++.|-+.....|+.-+|.+
T Consensus 93 ~~l~gPTgG--YLiGF~~aA~v~G~l~~~~~ 121 (198)
T 4dve_A 93 ASFLGPSGG--YRIAWLFTPFLIGFFLKKLK 121 (198)
T ss_dssp GGGGSTTHH--HHHHHHHHHHHHHHHHHHTT
T ss_pred hHHhcchhH--HHHHHHHHHHHHHHHHHHcc
Confidence 346777777 66777777888898877643
No 4
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=29.15 E-value=1.4e+02 Score=20.60 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh--hH-----------HHHHHHHHHHHHHHHHHHcCCCCc
Q 032082 29 LAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFL--DF-----------FNHITINIHASLTFIFSAAGVNIV 95 (147)
Q Consensus 29 l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~~~~~s~l--N~-----------~~~~~~~~~~~l~~~~~~lG~~~~ 95 (147)
+.-.+-|..-|+ -++||++++-..=+..+.++..++.++ +. .....+.+...+|...+..+-+..
T Consensus 10 ~~~s~~yA~~Gl--~~a~~~E~~fr~~~~~~~~~i~~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~v~~e~h 87 (121)
T 2kdc_A 10 IIKAAGYSWKGL--RAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYH 87 (121)
T ss_dssp HHHHHHTHHHHH--HHHTTTTTHHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCSC
T ss_pred HHHHHHHHHHHH--HHHHhCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 444566666675 567888888777777777776666665 11 122233334555555666776666
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 032082 96 PSMNVIYVIFGTLVLLNSGFFVFLLH 121 (147)
Q Consensus 96 p~~~~i~~l~p~liv~~s~i~~~i~~ 121 (147)
|.-...+-++-..+++.++.-+.+-.
T Consensus 88 ~lak~AKD~aaaAVlv~~~~a~~v~~ 113 (121)
T 2kdc_A 88 ELSGRAKDMGSAAVLIAIIVAVITWC 113 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888887777766665555433
No 5
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=20.41 E-value=1.4e+02 Score=21.24 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=34.7
Q ss_pred HHHHHh-----hH---HHHHHHHH-HHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Q 032082 64 FASFFL-----DF---FNHITINI-HASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109 (147)
Q Consensus 64 ~~~s~l-----N~---~~~~~~~~-~~~l~~~~~~lG~~~~p~~~~i~~l~p~li 109 (147)
.+.||+ |. =+++.+.+ .+.++++.++.|++.++..+.+.-.+|-++
T Consensus 50 ~v~SWvg~G~~N~pIs~~ql~~~lG~~~l~~lA~q~Gl~~~~~~~~LA~~LP~~V 104 (135)
T 1z67_A 50 ILSTWLSNQQRNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKII 104 (135)
T ss_dssp HHHHHHCSSSCCCCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHHChHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 888998 21 24555665 888999999999998877777777777653
No 6
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=18.68 E-value=1.6e+02 Score=17.25 Aligned_cols=24 Identities=4% Similarity=0.101 Sum_probs=16.2
Q ss_pred HHHh-hHHHHHHHHHHHHHHHHHHH
Q 032082 66 SFFL-DFFNHITINIHASLTFIFSA 89 (147)
Q Consensus 66 ~s~l-N~~~~~~~~~~~~l~~~~~~ 89 (147)
+.++ |+++++++-|.+..++++.+
T Consensus 8 t~~vq~LL~qmq~kFq~mS~~I~~r 32 (48)
T 3ci9_A 8 TSVVQTLLQQMQDKFQTISDQIIGR 32 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 78888888887777776443
No 7
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=16.50 E-value=4.3e+02 Score=21.40 Aligned_cols=76 Identities=4% Similarity=-0.031 Sum_probs=36.6
Q ss_pred HHHHHHHHHH--HHHHHHhCCChHHHHHHHHHH-HHHHHHhhHHHHHHH--HHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 032082 32 LLTHGVLGFS--MGSLWRLGVDWGLSIFLCTIV-VFASFFLDFFNHITI--NIHASLTFIFSAAGVNIVPSMNVIYVIFG 106 (147)
Q Consensus 32 ~~~~G~lG~~--lG~~~~~~~s~~~s~~~g~l~-~~~~s~lN~~~~~~~--~~~~~l~~~~~~lG~~~~p~~~~i~~l~p 106 (147)
.+..|+.+.. ....++++.++...+.+|..+ .++++..+.+.+..+ +..+...|++-++. .-+-+.+..+.|
T Consensus 146 Af~gal~a~~lv~~l~~~~~~~~~~liL~Giavs~~~~a~~~~l~~~~~~~~~~~l~~Wl~GSl~---~~~w~~l~~~~~ 222 (357)
T 4g1u_A 146 AFIGSLAISTIIFTLSRWGHGNLARLLLAGIAINALCGAAVGVLTYISDDQQLRQFSLWSMGSLG---QAQWSTLLVASS 222 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHTTTCCT---TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhhhhc---CCCHHHHHHHHH
Confidence 4444444433 333445567887777777766 333333344433221 23444444433333 334445555555
Q ss_pred HHHH
Q 032082 107 TLVL 110 (147)
Q Consensus 107 ~liv 110 (147)
..++
T Consensus 223 ~~~v 226 (357)
T 4g1u_A 223 LILP 226 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=14.24 E-value=1.8e+02 Score=16.64 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhCCC
Q 032082 37 VLGFSMGSLWRLGVD 51 (147)
Q Consensus 37 ~lG~~lG~~~~~~~s 51 (147)
++++...++|||++.
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 445566677887654
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=12.68 E-value=2e+02 Score=16.46 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhCCC
Q 032082 37 VLGFSMGSLWRLGVD 51 (147)
Q Consensus 37 ~lG~~lG~~~~~~~s 51 (147)
.+++...++|||++.
T Consensus 25 ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhhhhh
Confidence 444556677887653
No 10
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=11.82 E-value=94 Score=17.10 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhCC
Q 032082 37 VLGFSMGSLWRLGV 50 (147)
Q Consensus 37 ~lG~~lG~~~~~~~ 50 (147)
++|+..|-++||++
T Consensus 22 ii~l~~~~~iRRr~ 35 (35)
T 1iij_A 22 ILVVVVGILIKRRR 35 (35)
T ss_dssp HHTTTTTHHHHHCC
T ss_pred HHHHHhheEEeecC
Confidence 44556666777753
Done!