Query 032082
Match_columns 147
No_of_seqs 101 out of 124
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 15:04:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032082.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032082hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p90a_ c.55.5.2 (A:) NafY cor 29.7 9.3 0.00067 24.4 1.3 11 137-147 113-123 (123)
2 d2e74d2 f.23.12.1 (D:12-45) IS 24.5 31 0.0022 17.4 2.5 17 31-47 9-26 (34)
3 d1z67a1 a.259.1.1 (A:3-131) Hy 17.8 82 0.006 20.6 4.3 46 64-109 45-99 (129)
4 d1dlca3 f.1.3.1 (A:61-289) del 13.6 70 0.0051 22.3 3.3 32 14-49 12-43 (229)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 12.4 1.5E+02 0.011 17.9 4.5 25 95-119 74-98 (107)
6 d1a6qa1 a.159.1.1 (A:297-368) 12.0 24 0.0018 21.1 0.2 7 135-141 45-51 (72)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 11.7 1.6E+02 0.011 17.6 6.3 38 96-133 20-57 (100)
8 d2r6gf2 f.58.1.1 (F:261-504) M 11.0 2.3E+02 0.016 19.0 8.1 26 37-62 37-62 (244)
9 d1sr9a1 a.5.7.1 (A:437-491) 2- 10.1 97 0.007 17.1 2.5 19 123-145 1-19 (55)
10 d1ttea1 a.5.2.1 (A:161-215) Ub 9.9 57 0.0042 18.4 1.3 8 127-134 29-36 (55)
No 1
>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii [TaxId: 354]}
Probab=29.72 E-value=9.3 Score=24.44 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=8.6
Q ss_pred CCCcHHHHhhC
Q 032082 137 LRLPRWLEMAL 147 (147)
Q Consensus 137 p~~Pp~~~~~~ 147 (147)
.++|||+.++.
T Consensus 113 ~~~p~~l~k~~ 123 (123)
T d1p90a_ 113 GSPPPWLAKLV 123 (123)
T ss_dssp SCCCHHHHHHC
T ss_pred CCCChHHhhcC
Confidence 46899998863
No 2
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.50 E-value=31 Score=17.43 Aligned_cols=17 Identities=41% Similarity=0.810 Sum_probs=12.1
Q ss_pred HHHHHH-HHHHHHHHHHH
Q 032082 31 YLLTHG-VLGFSMGSLWR 47 (147)
Q Consensus 31 ~~~~~G-~lG~~lG~~~~ 47 (147)
-++.|| ..|+++|.++-
T Consensus 9 nlltfgt~tg~alg~lyp 26 (34)
T d2e74d2 9 NLLAFGTVTGVALGALYP 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhhhhh
Confidence 345677 67889988763
No 3
>d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]}
Probab=17.76 E-value=82 Score=20.55 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=34.9
Q ss_pred HHHHHh-----hH---HHHHHHHH-HHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Q 032082 64 FASFFL-----DF---FNHITINI-HASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109 (147)
Q Consensus 64 ~~~s~l-----N~---~~~~~~~~-~~~l~~~~~~lG~~~~p~~~~i~~l~p~li 109 (147)
.+.||+ |. -+++.+.+ .+.++++.++.|++.++..+.+.-.+|-++
T Consensus 45 ~v~SWvg~g~~N~pIs~~ql~~~lG~d~l~~lA~q~Gl~~~~~~~~LA~~LP~~V 99 (129)
T d1z67a1 45 ILSTWLSNQQRNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKII 99 (129)
T ss_dssp HHHHHHCSSSCCCCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHhCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHH
Confidence 889998 22 34556666 888999999999998777777777777643
No 4
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=13.60 E-value=70 Score=22.34 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhC
Q 032082 14 ATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLG 49 (147)
Q Consensus 14 va~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~ 49 (147)
+++.+++.+..|.-+. ..|+++..+|.+|-.+
T Consensus 12 i~~~il~~~~~P~~g~----~~~~~~~i~~~lwP~~ 43 (229)
T d1dlca3 12 VVGDLLGVVGFPFGGA----LVSFYTNFLNTIWPSE 43 (229)
T ss_dssp HHHHHTTSCBSCCHHH----HHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhcCCCcHHH----HHHHHHHHHHHhCCCC
Confidence 4444455554465443 3356677788888653
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=12.38 E-value=1.5e+02 Score=17.93 Aligned_cols=25 Identities=24% Similarity=0.471 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q 032082 95 VPSMNVIYVIFGTLVLLNSGFFVFL 119 (147)
Q Consensus 95 ~p~~~~i~~l~p~liv~~s~i~~~i 119 (147)
...+|.+++++|.++++.=.+..+-
T Consensus 74 n~~lEi~WTviP~lIL~~laipSl~ 98 (107)
T d3ehbb2 74 NTPIEVIWTLVPVLILVAIGAFSLP 98 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3559999999999888877766654
No 6
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.97 E-value=24 Score=21.07 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=5.4
Q ss_pred CCCCCcH
Q 032082 135 ASLRLPR 141 (147)
Q Consensus 135 ~ip~~Pp 141 (147)
+||++||
T Consensus 45 ~Ip~LPP 51 (72)
T d1a6qa1 45 NIPSLPP 51 (72)
T ss_dssp TCSSCCT
T ss_pred CCCCCCC
Confidence 6888887
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.72 E-value=1.6e+02 Score=17.58 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 032082 96 PSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGM 133 (147)
Q Consensus 96 p~~~~i~~l~p~liv~~s~i~~~i~~~va~~iL~Rlg~ 133 (147)
|..+.+..+.--.+.+..++.+++...+.+.+.|.-+.
T Consensus 20 ~~a~~i~~l~~~v~~i~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 20 PVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 43555555666667777888888888888888775554
No 8
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.95 E-value=2.3e+02 Score=19.00 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHH
Q 032082 37 VLGFSMGSLWRLGVDWGLSIFLCTIV 62 (147)
Q Consensus 37 ~lG~~lG~~~~~~~s~~~s~~~g~l~ 62 (147)
++|..+.+..++++.+++.+....+.
T Consensus 37 ~~~~~lA~~l~~~~~~~~~~~~~~~~ 62 (244)
T d2r6gf2 37 AVGMVLACLVQWEALRGKAVYRVLLI 62 (244)
T ss_dssp HHHHHHHHHHTCSSSTTHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 56677777777777677666655444
No 9
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.11 E-value=97 Score=17.08 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=13.4
Q ss_pred HHHHHHhhhCCCCCCCCcHHHHh
Q 032082 123 LYSVFLTRLGMKASLRLPRWLEM 145 (147)
Q Consensus 123 va~~iL~Rlg~~~ip~~Pp~~~~ 145 (147)
||+.+=+..|. ++|+|+|.
T Consensus 1 VAyiLe~~~Gi----~LPr~mq~ 19 (55)
T d1sr9a1 1 VAYIMKTDHGL----SLPRRLQI 19 (55)
T ss_dssp HHHHHHHHHCC----CCCHHHHH
T ss_pred CeEEeecccCC----CCCHHHHH
Confidence 46677778888 36777774
No 10
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.91 E-value=57 Score=18.36 Aligned_cols=8 Identities=63% Similarity=0.999 Sum_probs=6.3
Q ss_pred HHhhhCCC
Q 032082 127 FLTRLGMK 134 (147)
Q Consensus 127 iL~Rlg~~ 134 (147)
+|||||++
T Consensus 29 VLrrlgik 36 (55)
T d1ttea1 29 VLRRLGVK 36 (55)
T ss_dssp HHHHSCCS
T ss_pred HHHHhCcC
Confidence 67888885
Done!