BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032085
(147 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297836478|ref|XP_002886121.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
gi|297331961|gb|EFH62380.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 116/147 (78%), Gaps = 5/147 (3%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG SKA+A TD +LK++G + GK+T K DPN+PKRPPSAFFVF+E+FRK+F
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKPGKKTKK-----DPNQPKRPPSAFFVFLEDFRKEFNL 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
A+PNNKSVATVGKAAG +WKSM+E++KAP+V +AE RK++Y K MQ YN +LA G N E
Sbjct: 56 ANPNNKSVATVGKAAGARWKSMTEEDKAPYVAKAESRKTEYLKTMQQYNMKLASGTNRGE 115
Query: 121 ENESDKSKSEVNDEDDEEGSGEEEDDD 147
E++SDKSKSEV++ EE +EE+DD
Sbjct: 116 EDDSDKSKSEVDEAGSEEVFMQEEEDD 142
>gi|296088654|emb|CBI37645.3| unnamed protein product [Vitis vinifera]
Length = 154
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/137 (71%), Positives = 113/137 (82%), Gaps = 5/137 (3%)
Query: 1 MKGGRSKADAVG-TDSKL--KSKGARA-GKRTAKP-KAAKDPNKPKRPPSAFFVFMEEFR 55
MKGG+SKA V DSKL K KGA A GK+TAK KA KDPNKPKRP SAFFVFMEEFR
Sbjct: 1 MKGGKSKAAEVKRADSKLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEEFR 60
Query: 56 KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
KQ+KE HP NKSV+ VGKA G+KWKS+SE EKAP+V +AEKRK++YNK+MQ YNK++A+G
Sbjct: 61 KQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMAEG 120
Query: 116 VNAAEENESDKSKSEVN 132
AAEE ESDKS+SEVN
Sbjct: 121 PTAAEEEESDKSRSEVN 137
>gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa]
Length = 144
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/132 (70%), Positives = 109/132 (82%), Gaps = 5/132 (3%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGGRSK+D+ D+KLK KGA AG + +K KAAKDPNKPKRP SAFFVFME+FRKQ+KE
Sbjct: 1 MKGGRSKSDSRNNDAKLKRKGAGAGTKASK-KAAKDPNKPKRPASAFFVFMEDFRKQYKE 59
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
+HPNNKSVA VGKA G+KWKS+SE EKAPF +AEKRK +YNK+M YNK+LA G
Sbjct: 60 SHPNNKSVAAVGKAGGDKWKSLSEAEKAPFAAKAEKRKFEYNKDMAAYNKRLAGG----N 115
Query: 121 ENESDKSKSEVN 132
++ESDKSKSEVN
Sbjct: 116 DDESDKSKSEVN 127
>gi|224081483|ref|XP_002306429.1| high mobility group family [Populus trichocarpa]
gi|222855878|gb|EEE93425.1| high mobility group family [Populus trichocarpa]
Length = 144
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/132 (69%), Positives = 109/132 (82%), Gaps = 5/132 (3%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGGRSK+D+ D+KLK KGA AG + +K KAAKDPNKPKRP SAFFVFME+FRKQ+KE
Sbjct: 1 MKGGRSKSDSRNNDAKLKRKGAGAGTKASK-KAAKDPNKPKRPASAFFVFMEDFRKQYKE 59
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
+HPNNKSVA VGKA G+KWKS+SE EKAP+ +AEKRK +YNK+M YNK+LA G
Sbjct: 60 SHPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAEKRKFEYNKDMAAYNKRLAGG----N 115
Query: 121 ENESDKSKSEVN 132
++ESDKSKSEVN
Sbjct: 116 DDESDKSKSEVN 127
>gi|359476973|ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
vinifera]
Length = 156
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/139 (68%), Positives = 114/139 (82%), Gaps = 7/139 (5%)
Query: 1 MKGGRSKADAVG---TDSKL--KSKGARA-GKRTAKP-KAAKDPNKPKRPPSAFFVFMEE 53
MKGG+SKA V ++++L K KGA A GK+TAK KA KDPNKPKRP SAFFVFMEE
Sbjct: 1 MKGGKSKAAEVKRADSNARLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEE 60
Query: 54 FRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLA 113
FRKQ+KE HP NKSV+ VGKA G+KWKS+SE EKAP+V +AEKRK++YNK+MQ YNK++A
Sbjct: 61 FRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMA 120
Query: 114 DGVNAAEENESDKSKSEVN 132
+G AAEE ESDKS+SEVN
Sbjct: 121 EGPTAAEEEESDKSRSEVN 139
>gi|2832355|emb|CAA74403.1| HMG protein [Arabidopsis thaliana]
Length = 138
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 116/147 (78%), Gaps = 9/147 (6%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG SKA A TD +LK++G +AGK+T K DPN+PKRPPSAFFVF+E+FRK+F
Sbjct: 1 MKGGESKAGATSTDQRLKTRGRKAGKKTKK-----DPNQPKRPPSAFFVFLEDFRKEFNL 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
A+PNNKSVATVGKAAG +WKSM++++KAP+V +AE RK++Y KN+Q YN +LA G N E
Sbjct: 56 ANPNNKSVATVGKAAGARWKSMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-RE 114
Query: 121 ENESDKSKSEVNDEDDEEGSGEEEDDD 147
E++SDKSKSEV++ EE E EDDD
Sbjct: 115 EDDSDKSKSEVDEAVSEE---EAEDDD 138
>gi|15227862|ref|NP_179347.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|145323080|ref|NP_001031364.2| high mobility group B4 protein [Arabidopsis thaliana]
gi|310947092|sp|Q42344.1|HMGB4_ARATH RecName: Full=High mobility group B protein 4; AltName: Full=High
mobility group protein G; Short=AtHMGgamma; Short=HMG
gamma; AltName: Full=Nucleosome/chromatin assembly
factor group D 04; Short=Nucleosome/chromatin assembly
factor group D 4
gi|13926177|gb|AAK49570.1|AF370562_1 putative HMG protein [Arabidopsis thaliana]
gi|4914377|gb|AAD32913.1| putative HMG protein [Arabidopsis thaliana]
gi|23297615|gb|AAN12992.1| putative HMG protein [Arabidopsis thaliana]
gi|330251557|gb|AEC06651.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|330251558|gb|AEC06652.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 138
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 117/147 (79%), Gaps = 9/147 (6%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG SKA+A TD +LK++G +AGK+T K DPN+PKRPPSAFFVF+E+FRK+F
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGKKTKK-----DPNQPKRPPSAFFVFLEDFRKEFNL 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
A+PNNKSVATVGKAAG +WK+M++++KAP+V +AE RK++Y KN+Q YN +LA G N E
Sbjct: 56 ANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-RE 114
Query: 121 ENESDKSKSEVNDEDDEEGSGEEEDDD 147
E++SDKSKSEV++ EE E EDDD
Sbjct: 115 EDDSDKSKSEVDEAVSEE---EAEDDD 138
>gi|21592453|gb|AAM64404.1| putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 116/147 (78%), Gaps = 9/147 (6%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG SKA+A TD +LK++G +AG +T K DPN+PKRPPSAFFVF+E+FRK+F
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGNKTKK-----DPNQPKRPPSAFFVFLEDFRKEFNL 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
A+PNNKSVATVGKAAG +WKSM++++KAP+V +AE RK++Y KN+Q YN +LA G N E
Sbjct: 56 ANPNNKSVATVGKAAGARWKSMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-RE 114
Query: 121 ENESDKSKSEVNDEDDEEGSGEEEDDD 147
E++SDKSKSEV++ EE E EDDD
Sbjct: 115 EDDSDKSKSEVDEAVSEE---EAEDDD 138
>gi|145328748|ref|NP_001077909.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|222423535|dbj|BAH19737.1| AT2G17560 [Arabidopsis thaliana]
gi|330251559|gb|AEC06653.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 134
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 115/147 (78%), Gaps = 13/147 (8%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG SKA+A TD +LK++G +AGK+T K DPN+PKRPPSAFFVF+E+FRK+F
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGKKTKK-----DPNQPKRPPSAFFVFLEDFRKEFNL 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
A+PNNKSVATVGKAAG +WK+M++++KAP+V +AE RK++Y KN+Q YN +LA G N E
Sbjct: 56 ANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-RE 114
Query: 121 ENESDKSKSEVNDEDDEEGSGEEEDDD 147
E++SDKSKSEV++ E EDDD
Sbjct: 115 EDDSDKSKSEVDE-------AEAEDDD 134
>gi|13877775|gb|AAK43965.1|AF370150_1 putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 116/147 (78%), Gaps = 9/147 (6%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG SKA+A TD +LK++G +AGK+T K DPN+PKRPPSAFFVF+E+FRK+F
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGKKTKK-----DPNQPKRPPSAFFVFLEDFRKEFNL 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
A+PNNKSVATVGKAAG +WK+M++++KAP+V +AE K++Y KN+Q YN +LA G N E
Sbjct: 56 ANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESIKTEYIKNVQQYNLKLASGTN-RE 114
Query: 121 ENESDKSKSEVNDEDDEEGSGEEEDDD 147
E++SDKSKSEV++ EE E EDDD
Sbjct: 115 EDDSDKSKSEVDEAVSEE---EAEDDD 138
>gi|351725757|ref|NP_001235312.1| uncharacterized protein LOC100499992 [Glycine max]
gi|255628371|gb|ACU14530.1| unknown [Glycine max]
Length = 139
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 106/128 (82%), Gaps = 3/128 (2%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
++K+DA DS+LK KGA AG++ ++ KAAKDPNKPKRPPSAFFVFM EFR+QFK+ HPN
Sbjct: 3 KAKSDAKAADSRLKRKGAGAGRKQSR-KAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPN 61
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
NKSVA VGKA GEKWKS+S+ EKAPFV AEK+K +Y K + YNKQL +G N+ EE+ES
Sbjct: 62 NKSVAVVGKAGGEKWKSLSDAEKAPFVATAEKKKQEYEKTISAYNKQL-EGKNS-EEDES 119
Query: 125 DKSKSEVN 132
DKSKSEVN
Sbjct: 120 DKSKSEVN 127
>gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 106/128 (82%), Gaps = 2/128 (1%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+ KADA D++LK KGA AG++ +K KAAKDPNKPKRPPSAFFVFM EFR+Q+K+ HP
Sbjct: 3 KVKADAKAADNRLKRKGAGAGRKQSK-KAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPT 61
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
NKSVA VGKA G+KWKS+S+ EKAPFV RAEK+K +Y+K++ YN++L +G N +EE +S
Sbjct: 62 NKSVAVVGKAGGDKWKSLSDAEKAPFVARAEKKKEEYDKSILAYNRKL-EGKNPSEEEKS 120
Query: 125 DKSKSEVN 132
DKSKSEVN
Sbjct: 121 DKSKSEVN 128
>gi|351723773|ref|NP_001235499.1| uncharacterized protein LOC100305957 [Glycine max]
gi|255627099|gb|ACU13894.1| unknown [Glycine max]
Length = 142
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 105/128 (82%), Gaps = 3/128 (2%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
++K+DA DS+LK KGA AG++ +K KAAKDPNKPK PPSAFFVFM EFR+QFK+ HPN
Sbjct: 3 KAKSDAKAADSRLKRKGAGAGRKQSK-KAAKDPNKPKGPPSAFFVFMSEFREQFKKEHPN 61
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
NKSVA VGKA G+KWKS+S+ EKAPFV AEK+K +Y K + YNK+L +G N+ EE+ES
Sbjct: 62 NKSVAVVGKAGGDKWKSLSDAEKAPFVATAEKKKQEYEKTILAYNKKL-EGKNS-EEDES 119
Query: 125 DKSKSEVN 132
DKSKSEVN
Sbjct: 120 DKSKSEVN 127
>gi|79318286|ref|NP_001031074.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|297845040|ref|XP_002890401.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|297336243|gb|EFH66660.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|332191886|gb|AEE30007.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 142
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 110/147 (74%), Gaps = 6/147 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGAR-AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK 59
MKG +SK + + + K A+ AG+ A AAKDPNKPKRP SAFFVFME+FR+ FK
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKA---AAKDPNKPKRPASAFFVFMEDFRETFK 57
Query: 60 EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
+ +P NKSVATVGKAAG+KWKS+S+ EKAP+V +AEKRK +Y KN++ YNK+L +G
Sbjct: 58 KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PK 115
Query: 120 EENESDKSKSEVNDEDDEEGSGEEEDD 146
E+ ESDKS SEVNDEDD E EE+DD
Sbjct: 116 EDEESDKSVSEVNDEDDAEDGSEEDDD 142
>gi|145323962|ref|NP_001077570.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191890|gb|AEE30011.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 140
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 102/143 (71%), Gaps = 7/143 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKG +SKA+ T + K A+ K AAKDPNKPKRP SAFFVFME+FR +KE
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAK-----GAAKDPNKPKRPSSAFFVFMEDFRVTYKE 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HP NKSVA VGKA GEKWKS+S+ EKAP+V +A+KRK +Y KNM+ YNK+L +G E
Sbjct: 56 EHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKE 113
Query: 121 ENESDKSKSEVNDEDDEEGSGEE 143
+ ESDKS SEVNDEDD E EE
Sbjct: 114 DEESDKSVSEVNDEDDAEDGSEE 136
>gi|297845042|ref|XP_002890402.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
gi|297336244|gb|EFH66661.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 103/143 (72%), Gaps = 7/143 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SK + + K A+ GK AAKDPNKPKRP SAFFVFME+FR+ +K+
Sbjct: 3 MKGGKSKTETRNAKLSVTKKPAKGGKG-----AAKDPNKPKRPSSAFFVFMEDFRETYKK 57
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HP NKSVA VGKA GEKWKS+S+ EKAP+V +A+KRK +Y KNM+ YNK+L +G E
Sbjct: 58 EHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKE 115
Query: 121 ENESDKSKSEVNDEDDEEGSGEE 143
+ ESDKS SEVNDEDD E EE
Sbjct: 116 DEESDKSVSEVNDEDDAEDGSEE 138
>gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18 [Arabidopsis thaliana]
Length = 662
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 107/144 (74%), Gaps = 6/144 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGAR-AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK 59
MKG +SK + + + K A+ AG+ A AAKDPNKPKRP SAFFVFME+FR+ FK
Sbjct: 378 MKGAKSKTETRSSKLSVTKKPAKGAGRGKA---AAKDPNKPKRPASAFFVFMEDFRETFK 434
Query: 60 EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
+ +P NKSVATVGKAAG+KWKS+S+ EKAP+V +AEKRK +Y KN++ YNK+L +G
Sbjct: 435 KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PK 492
Query: 120 EENESDKSKSEVNDEDDEEGSGEE 143
E+ ESDKS SEVNDEDD E EE
Sbjct: 493 EDEESDKSVSEVNDEDDAEDGSEE 516
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 95/132 (71%), Gaps = 7/132 (5%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKG +SKA+ T + K A+ K AAKDPNKPKRP SAFFVFME+FR +KE
Sbjct: 522 MKGAKSKAETRSTKLSVTKKPAKGAK-----GAAKDPNKPKRPSSAFFVFMEDFRVTYKE 576
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HP NKSVA VGKA GEKWKS+S+ EKAP+V +A+KRK +Y KNM+ YNK+L +G E
Sbjct: 577 EHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKE 634
Query: 121 ENESDKSKSEVN 132
+ ESDKS SEVN
Sbjct: 635 DEESDKSVSEVN 646
>gi|225457566|ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
gi|359491843|ref|XP_003634333.1| PREDICTED: high mobility group-like isoform 2 [Vitis vinifera]
gi|297745562|emb|CBI40727.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 105/137 (76%), Gaps = 5/137 (3%)
Query: 1 MKGGRSKADAVGTDSKL----KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRK 56
MKGGRSK+D D+KL + +AGK+T K K KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1 MKGGRSKSDTKKADAKLSVKKGAAATKAGKKTKKEKPVKDPNKPKRPASAFFVFMEEFRK 60
Query: 57 QFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGV 116
Q+KE HP+NKSV+ VGKA G+KWKSMSE EKAP+V +AEKRK +Y KNM+ YNK+ A+G
Sbjct: 61 QYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNKKQAEGT 120
Query: 117 NAA-EENESDKSKSEVN 132
EE+ES+KS SEVN
Sbjct: 121 KVVEEEDESEKSLSEVN 137
>gi|2894109|emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
Length = 141
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 101/132 (76%), Gaps = 6/132 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKG +SKA A D+KL + + AK AAKDPNKPKRPPSAFFVFMEEFRK +KE
Sbjct: 1 MKGAKSKAKA---DTKLGVRKKATESKKAK-NAAKDPNKPKRPPSAFFVFMEEFRKTYKE 56
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HPNNKSVA VGKA G+KWK +S++EKAP+ +AEKRK++Y KNM YNK+LA G A+
Sbjct: 57 KHPNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKNMDAYNKKLAAG--DAD 114
Query: 121 ENESDKSKSEVN 132
+ ESDKSKSEV+
Sbjct: 115 DEESDKSKSEVH 126
>gi|729736|sp|P40619.1|HMGL_IPONI RecName: Full=HMG1/2-like protein
Length = 144
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 105/138 (76%), Gaps = 6/138 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SKA +D+KL K A + K KA KDPNKPKRPPSAFFVFME+FRK +KE
Sbjct: 1 MKGGKSKAK---SDNKLAVKKQAADTKKTK-KAVKDPNKPKRPPSAFFVFMEDFRKTYKE 56
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HPNNKSVA VGKA G+KWK ++ EKAPF+ +AEKRK +Y KN+Q YNK+ AAE
Sbjct: 57 KHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKK--QAAGAAE 114
Query: 121 ENESDKSKSEVNDEDDEE 138
E ESDKS+SEVND+D+++
Sbjct: 115 EEESDKSRSEVNDDDEDQ 132
>gi|1052956|gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/133 (62%), Positives = 102/133 (76%), Gaps = 8/133 (6%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPK-AAKDPNKPKRPPSAFFVFMEEFRKQFK 59
MKGG+SKA +D+KL K + G T K K + KDPNKPKRPPSAFFVFME+FRK +K
Sbjct: 1 MKGGKSKAK---SDNKLAVK--KRGCETKKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYK 55
Query: 60 EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
E HPNNKSVA VGKA G+KWK +++ EKAPF+ +AEKRK +Y K+MQ YN++ A AA
Sbjct: 56 EKHPNNKSVAAVGKAGGDKWKQLTDAEKAPFIAKAEKRKQEYEKSMQAYNRKQAG--EAA 113
Query: 120 EENESDKSKSEVN 132
+E ESDKS+SEVN
Sbjct: 114 DEEESDKSRSEVN 126
>gi|449456873|ref|XP_004146173.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449495123|ref|XP_004159740.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/132 (71%), Positives = 112/132 (84%), Gaps = 2/132 (1%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SK TD+KLKSK A A K++AK AAKDPNKPKRP SAFFVFMEEFRKQ+K+
Sbjct: 1 MKGGKSKGAPKKTDTKLKSKSAGASKKSAK--AAKDPNKPKRPASAFFVFMEEFRKQYKK 58
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HPNNKSVA VGKA G+KWKSMS+ EKAP++ +AEKRK++YNK+MQ YNK++A+G N AE
Sbjct: 59 EHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAE 118
Query: 121 ENESDKSKSEVN 132
E ESDKSKSEVN
Sbjct: 119 EEESDKSKSEVN 130
>gi|359476975|ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
vinifera]
Length = 125
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 97/119 (81%), Gaps = 7/119 (5%)
Query: 1 MKGGRSKADAVG---TDSKL--KSKGARA-GKRTAKP-KAAKDPNKPKRPPSAFFVFMEE 53
MKGG+SKA V ++++L K KGA A GK+TAK KA KDPNKPKRP SAFFVFMEE
Sbjct: 1 MKGGKSKAAEVKRADSNARLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEE 60
Query: 54 FRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112
FRKQ+KE HP NKSV+ VGKA G+KWKS+SE EKAP+V +AEKRK++YNK+MQ YNK++
Sbjct: 61 FRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRM 119
>gi|312281681|dbj|BAJ33706.1| unnamed protein product [Thellungiella halophila]
Length = 144
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 98/132 (74%), Gaps = 4/132 (3%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SK + + + K A+ R+ AAKDPNKPKRP SAFFVFME+FR+ FK+
Sbjct: 1 MKGGKSKTETRSSKLSVTKKPAKGAGRSKA--AAKDPNKPKRPASAFFVFMEDFRETFKK 58
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HP NKSVA VGKAAG+KWKS+S+ EKAP+V +AEKRK DY KNM+ YNK+L +G E
Sbjct: 59 EHPKNKSVAAVGKAAGDKWKSLSDAEKAPYVAKAEKRKVDYEKNMKAYNKKLEEGPK--E 116
Query: 121 ENESDKSKSEVN 132
+ ESDKS SEVN
Sbjct: 117 DEESDKSVSEVN 128
>gi|217075707|gb|ACJ86213.1| unknown [Medicago truncatula]
gi|388513073|gb|AFK44598.1| unknown [Medicago truncatula]
Length = 142
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 100/128 (78%), Gaps = 4/128 (3%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+ KAD+ D++LK KGA AG++ K KAAKDPNKPKRPPSAFFVFM +FR+Q+K+ HPN
Sbjct: 3 KVKADSKPADNRLKRKGAGAGRKQTK-KAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPN 61
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
NKSVA VGKA GE WKSMSE++KAP+ RA K+K +Y Q YNK+L +G + EE+ S
Sbjct: 62 NKSVAAVGKACGEAWKSMSEEDKAPYAARALKKKEEYEVATQAYNKKL-EGKD--EEDGS 118
Query: 125 DKSKSEVN 132
DKSKSEVN
Sbjct: 119 DKSKSEVN 126
>gi|194466165|gb|ACF74313.1| high mobility group protein 2 [Arachis hypogaea]
Length = 153
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 99/137 (72%), Gaps = 5/137 (3%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPK---AAKDPNKPKRPPSAFFVFMEEFR 55
MKG +SKA++ D+KL KG A K K AAKDPNK KRPPSAFFVFMEEFR
Sbjct: 1 MKGAKSKAESKRGDAKLAVNKKGTPATKGGRKTGKGKAAKDPNKLKRPPSAFFVFMEEFR 60
Query: 56 KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
KQF + HP NK+V+ VGKAAG KWK MS+ EKAP+V ++EKRK DY KNM+ YNK+ A+G
Sbjct: 61 KQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVAKSEKRKQDYEKNMRAYNKKQAEG 120
Query: 116 VNAAEENESDKSKSEVN 132
+E ESDKS SEVN
Sbjct: 121 PTGGDEEESDKSISEVN 137
>gi|309243128|gb|ADD74180.2| high mobility group box 3 protein [Gossypium hirsutum]
Length = 139
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/132 (68%), Positives = 111/132 (84%), Gaps = 5/132 (3%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG++K+D++ +KLK KGA AGKR K AAKDPNKPKRP SAFFVFMEEFRKQ+KE
Sbjct: 1 MKGGQTKSDSMQAGNKLKGKGAGAGKRAKK--AAKDPNKPKRPASAFFVFMEEFRKQYKE 58
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
A+P+N+SV+ VGKA GEKWKSM++ EKAP+V++AEKRKS+YNK MQ YN +LA G N
Sbjct: 59 ANPDNRSVSAVGKAGGEKWKSMTDAEKAPYVQKAEKRKSEYNKKMQAYNLKLAGGGN--- 115
Query: 121 ENESDKSKSEVN 132
++ESDKSKSEVN
Sbjct: 116 DDESDKSKSEVN 127
>gi|449455609|ref|XP_004145545.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449511984|ref|XP_004164108.1| PREDICTED: HMG1/2-like protein-like isoform 1 [Cucumis sativus]
gi|449511988|ref|XP_004164109.1| PREDICTED: HMG1/2-like protein-like isoform 2 [Cucumis sativus]
Length = 146
Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 107/132 (81%), Gaps = 1/132 (0%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+S++++ D+KL K A K+ +K KA KDPNKPKRP SAFFVFMEEFRK+F E
Sbjct: 1 MKGGKSRSESKKADTKLAVKKGAAAKKGSK-KAGKDPNKPKRPASAFFVFMEEFRKKFNE 59
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
+PNNK+V+ VGKAAG+KWKSMS+ EKAP++ +A+KRK +Y KNM+ YNK+ A G NAAE
Sbjct: 60 ENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAE 119
Query: 121 ENESDKSKSEVN 132
E+ES+KS SEVN
Sbjct: 120 EDESEKSMSEVN 131
>gi|148250187|gb|ABQ53545.1| HMG1 protein [Arachis diogoi]
Length = 141
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 82/100 (82%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVE 92
AAKDPNKPKRPPSAFFVFMEEFRKQF + HP NK+V+ VGKAAG KWK MS+ EKAP+V
Sbjct: 26 AAKDPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVA 85
Query: 93 RAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
++EKRK DY KNM+ YNK+ A+G +E ESDKS SEVN
Sbjct: 86 KSEKRKQDYEKNMRAYNKKQAEGPTGGDEEESDKSISEVN 125
>gi|18394900|ref|NP_564124.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|75220405|sp|P93047.1|HMGB3_ARATH RecName: Full=High mobility group B protein 3; AltName: Full=High
mobility group protein B 2; Short=AtHMGbeta2; Short=HMG
beta 2; AltName: Full=Nucleosome/chromatin assembly
factor group D 03; Short=Nucleosome/chromatin assembly
factor group D 3
gi|15724174|gb|AAL06479.1|AF411789_1 At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|1694976|emb|CAA70691.1| HMG1 [Arabidopsis thaliana]
gi|2832361|emb|CAA74402.1| HMG protein [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|21537072|gb|AAM61413.1| unknown [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein [Arabidopsis thaliana]
gi|23198424|gb|AAN15739.1| expressed protein [Arabidopsis thaliana]
gi|332191888|gb|AEE30009.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 141
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 95/132 (71%), Gaps = 7/132 (5%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKG +SKA+ T + K A+ K AAKDPNKPKRP SAFFVFME+FR +KE
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG-----AAKDPNKPKRPSSAFFVFMEDFRVTYKE 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HP NKSVA VGKA GEKWKS+S+ EKAP+V +A+KRK +Y KNM+ YNK+L +G E
Sbjct: 56 EHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKE 113
Query: 121 ENESDKSKSEVN 132
+ ESDKS SEVN
Sbjct: 114 DEESDKSVSEVN 125
>gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum]
Length = 142
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 95/135 (70%), Gaps = 13/135 (9%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAK--DPNKPKRPPSAFFVFMEEFRKQF 58
MKGG+SKA G DSKL G R K DPNKPKRPPSAFFVFMEEFRK +
Sbjct: 1 MKGGKSKA---GADSKL---GVRKKATETKKAKKAAKDPNKPKRPPSAFFVFMEEFRKTY 54
Query: 59 KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN-KQLADGVN 117
KE HPNNKSVA VGKA G+ WK +SE EKAP+ +AEKRK++Y KNM YN KQ D
Sbjct: 55 KEKHPNNKSVAAVGKAGGDAWKKLSEAEKAPYQAKAEKRKAEYQKNMDAYNRKQAGD--- 111
Query: 118 AAEENESDKSKSEVN 132
AEE+ESDKSKSEV+
Sbjct: 112 -AEEDESDKSKSEVH 125
>gi|356508616|ref|XP_003523051.1| PREDICTED: HMG1/2-like protein-like [Glycine max]
Length = 152
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 91/119 (76%), Gaps = 4/119 (3%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKP----KAAKDPNKPKRPPSAFFVFMEEFRK 56
MKGG+SK ++ D+KL A +T KP KAAKDPNKPKRPPSAFFVFMEEFRK
Sbjct: 1 MKGGKSKTESKRADAKLAVNKKGAATKTRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 57 QFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
F + HP+NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G
Sbjct: 61 VFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119
>gi|308569654|gb|ADO34793.1| high mobility group box 2 protein [Gossypium hirsutum]
Length = 146
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 91/116 (78%), Gaps = 3/116 (2%)
Query: 1 MKGGRSKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK 59
MKGG+SK+DA + K +AGK++ KAAKDPNKPKRP SAFFVFMEEFR+Q+K
Sbjct: 1 MKGGKSKSDAKSAKLSVNKKSTTKAGKKSG--KAAKDPNKPKRPASAFFVFMEEFREQYK 58
Query: 60 EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+ HP NKSVA VGKA G+KWKS+SE EK P+V++AEKRK +Y KNM+ YNK+ A+G
Sbjct: 59 KEHPKNKSVAAVGKAGGDKWKSLSEAEKRPYVDKAEKRKVEYEKNMKAYNKRQAEG 114
>gi|115480551|ref|NP_001063869.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|50726318|dbj|BAD33893.1| putative HMGd1 [Oryza sativa Japonica Group]
gi|113632102|dbj|BAF25783.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|213959176|gb|ACJ54922.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215694881|dbj|BAG90072.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 127
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 88/114 (77%), Gaps = 4/114 (3%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K KA KDPNKPKRPPSAFFVFME+FRK +KE HPN K V+ +GKA G+KWKSM++ +KAP
Sbjct: 18 KTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDADKAP 77
Query: 90 FVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEE 143
FV +AEK K++Y K + YN + A G A +SDKSKSEVNDED EGSG+E
Sbjct: 78 FVTKAEKLKAEYTKKIDAYNNKQAGG--PATSGDSDKSKSEVNDED--EGSGDE 127
>gi|388504718|gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 94/124 (75%), Gaps = 4/124 (3%)
Query: 1 MKGGRSKADAVGTDSKL----KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRK 56
MKGG+S+ ++ + KL K+ GA R AK KAAKDPNKPKRPPSAFFVFME+FRK
Sbjct: 1 MKGGKSRTESKRAEPKLAVNKKAGGATKPARGAKGKAAKDPNKPKRPPSAFFVFMEDFRK 60
Query: 57 QFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGV 116
F + +P NK+V+ VGKAAG KWKSMSE EKAP+V +AEKRK+DY K M+ YNK+ A+G
Sbjct: 61 IFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQAEGP 120
Query: 117 NAAE 120
AA+
Sbjct: 121 AAAD 124
>gi|18394898|ref|NP_564123.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|75219648|sp|O49596.1|HMGB2_ARATH RecName: Full=High mobility group B protein 2; AltName: Full=High
mobility group protein B 1; Short=AtHMGbeta1; Short=HMG
beta 1; AltName: Full=Nucleosome/chromatin assembly
factor group D 02; Short=Nucleosome/chromatin assembly
factor group D 2
gi|13877971|gb|AAK44063.1|AF370248_1 unknown protein [Arabidopsis thaliana]
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis thaliana]
gi|21536964|gb|AAM61305.1| unknown [Arabidopsis thaliana]
gi|26452113|dbj|BAC43146.1| unknown protein [Arabidopsis thaliana]
gi|225897948|dbj|BAH30306.1| hypothetical protein [Arabidopsis thaliana]
gi|332191885|gb|AEE30006.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 144
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/133 (59%), Positives = 100/133 (75%), Gaps = 6/133 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGAR-AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK 59
MKG +SK + + + K A+ AG+ A AAKDPNKPKRP SAFFVFME+FR+ FK
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKA---AAKDPNKPKRPASAFFVFMEDFRETFK 57
Query: 60 EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
+ +P NKSVATVGKAAG+KWKS+S+ EKAP+V +AEKRK +Y KN++ YNK+L +G
Sbjct: 58 KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PK 115
Query: 120 EENESDKSKSEVN 132
E+ ESDKS SEVN
Sbjct: 116 EDEESDKSVSEVN 128
>gi|145323960|ref|NP_001077569.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|332191887|gb|AEE30008.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 143
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/133 (59%), Positives = 100/133 (75%), Gaps = 6/133 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGAR-AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK 59
MKG +SK + + + K A+ AG+ A AAKDPNKPKRP SAFFVFME+FR+ FK
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKA---AAKDPNKPKRPASAFFVFMEDFRETFK 57
Query: 60 EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
+ +P NKSVATVGKAAG+KWKS+S+ EKAP+V +AEKRK +Y KN++ YNK+L +G
Sbjct: 58 KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PK 115
Query: 120 EENESDKSKSEVN 132
E+ ESDKS SEVN
Sbjct: 116 EDEESDKSVSEVN 128
>gi|351725567|ref|NP_001236841.1| HMG1/2-like protein [Glycine max]
gi|123379|sp|P26585.1|HMGL_SOYBN RecName: Full=HMG1/2-like protein; AltName: Full=Protein SB11
gi|18645|emb|CAA41200.1| HMG-1 like protein gene [Glycine max]
Length = 152
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 89/119 (74%), Gaps = 4/119 (3%)
Query: 1 MKGGRSKADAVGTDSKL----KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRK 56
MKGG+SK ++ D KL K +A K K KAAKDPNKPKRPPSAFFVFMEEFRK
Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 57 QFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
F + HP NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G
Sbjct: 61 VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119
>gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arachis hypogaea]
Length = 139
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 100/126 (79%), Gaps = 3/126 (2%)
Query: 7 KADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK 66
KADA D++LK KGA G++ AK AKDPNKPKRPPSAFFVFM EFR+Q+K+ HPNNK
Sbjct: 5 KADAKAADNRLKRKGAGTGRKQAK--KAKDPNKPKRPPSAFFVFMSEFREQYKKEHPNNK 62
Query: 67 SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDK 126
SVA VGKA G++WKSMS+ +KAP+ +AEK+K +Y + MQ YNK+ + A+EE+ESDK
Sbjct: 63 SVAVVGKAGGDRWKSMSDADKAPYQAKAEKKKEEYERTMQAYNKK-QESKGASEEDESDK 121
Query: 127 SKSEVN 132
SKSEVN
Sbjct: 122 SKSEVN 127
>gi|729737|sp|P40620.1|HMGL_VICFA RecName: Full=HMG1/2-like protein
Length = 149
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 102/137 (74%), Gaps = 8/137 (5%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPKAA---KDPNKPKRPPSAFFVFMEEFR 55
MKGG+SK ++ ++KL KGA A K KP KDPNKPKRPPSAFFVFM +FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60
Query: 56 KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+Q+K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA K+K +Y +Q YNK+L +G
Sbjct: 61 EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EG 119
Query: 116 VNAAEENESDKSKSEVN 132
+ +E SDKSKSEVN
Sbjct: 120 KD--DEEGSDKSKSEVN 134
>gi|312282031|dbj|BAJ33881.1| unnamed protein product [Thellungiella halophila]
Length = 141
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/132 (56%), Positives = 94/132 (71%), Gaps = 7/132 (5%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SK + + + K + GK AAKDPNKPKRP SAFFVFMEEFR+ +K+
Sbjct: 1 MKGGKSKTETRSSKLSVNKKPTKGGKG-----AAKDPNKPKRPASAFFVFMEEFRETYKK 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HPNNKSVA VGKA G+KWKS+S+ EKAP+ +A+KRK +Y KNM YNK+ +G E
Sbjct: 56 EHPNNKSVAAVGKAGGQKWKSLSDSEKAPYQAKADKRKVEYEKNMNAYNKKQEEG--PKE 113
Query: 121 ENESDKSKSEVN 132
+ ESDKS SEV+
Sbjct: 114 DEESDKSVSEVH 125
>gi|295913458|gb|ADG57979.1| transcription factor [Lycoris longituba]
Length = 179
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 88/121 (72%), Gaps = 6/121 (4%)
Query: 1 MKGGRSKADAVG-TDSKL--KSKGARAGKRTAKPKA---AKDPNKPKRPPSAFFVFMEEF 54
MKGG+SKAD D++L K K A + K KDPNKPKRPPSAFFVFMEEF
Sbjct: 19 MKGGKSKADTSKKADARLSVKRKAAEKPAKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 78
Query: 55 RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLAD 114
RKQFKE +PNNK V+ VGKAAG+KWKSMS EKAP+ +A KRK++YNK M YNK+LAD
Sbjct: 79 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKKLAD 138
Query: 115 G 115
G
Sbjct: 139 G 139
>gi|295913526|gb|ADG58011.1| transcription factor [Lycoris longituba]
Length = 171
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 88/121 (72%), Gaps = 6/121 (4%)
Query: 1 MKGGRSKADAVG-TDSKL--KSKGARAGKRTAKPKA---AKDPNKPKRPPSAFFVFMEEF 54
MKGG+SKAD D++L K K A + K KDPNKPKRPPSAFFVFMEEF
Sbjct: 14 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 73
Query: 55 RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLAD 114
RKQFKE +PNNK V+ VGKAAG+KWKSMS EKAP+ +A KRK++YNK M YNK+LAD
Sbjct: 74 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKKLAD 133
Query: 115 G 115
G
Sbjct: 134 G 134
>gi|116778852|gb|ABK21026.1| unknown [Picea sitchensis]
gi|116782574|gb|ABK22556.1| unknown [Picea sitchensis]
gi|116782678|gb|ABK22606.1| unknown [Picea sitchensis]
gi|116782786|gb|ABK22657.1| unknown [Picea sitchensis]
gi|116782898|gb|ABK22712.1| unknown [Picea sitchensis]
gi|116791878|gb|ABK26144.1| unknown [Picea sitchensis]
gi|148907501|gb|ABR16881.1| unknown [Picea sitchensis]
gi|224284566|gb|ACN40016.1| unknown [Picea sitchensis]
gi|224285212|gb|ACN40332.1| unknown [Picea sitchensis]
gi|224286734|gb|ACN41070.1| unknown [Picea sitchensis]
Length = 157
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 100/145 (68%), Gaps = 15/145 (10%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKP------------KAAKDPNKPKRPPSAFF 48
MKGG++K +A T K++ K K AK KAAKDPNKPKRP SAFF
Sbjct: 1 MKGGKAKNEASSTLKKVEEKPIGKRKTAAKESKVSSRQEKKGRKAAKDPNKPKRPASAFF 60
Query: 49 VFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
VFME+FRK +KE +PN KSV+ VGKA G+KWKSMSE +KAP+V +A KRK++Y KNM Y
Sbjct: 61 VFMEDFRKTYKEKNPNVKSVSVVGKAGGDKWKSMSEADKAPYVAKAGKRKTEYEKNMAAY 120
Query: 109 -NKQLADGVNAAEENESDKSKSEVN 132
NKQ + ++AE ESDKSKSEVN
Sbjct: 121 NNKQTSTAGDSAE--ESDKSKSEVN 143
>gi|295913708|gb|ADG58095.1| transcription factor [Lycoris longituba]
Length = 190
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 88/121 (72%), Gaps = 6/121 (4%)
Query: 1 MKGGRSKADAVG-TDSKL--KSKGARAGKRTAKPKA---AKDPNKPKRPPSAFFVFMEEF 54
MKGG+SKAD D++L K K A + K KDPNKPKRPPSAFFVFMEEF
Sbjct: 29 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 88
Query: 55 RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLAD 114
RKQFKE +PNNK V+ VGKAAG+KWKSMS EKAP+ +A KRK++YNK M YNK+LAD
Sbjct: 89 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKKLAD 148
Query: 115 G 115
G
Sbjct: 149 G 149
>gi|308569660|gb|ADO34795.1| high mobility group box 1 protein [Gossypium hirsutum]
Length = 142
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 97/132 (73%), Gaps = 6/132 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SK +D+K ++ KAAKDPNKPKRP SAFFVFMEEFR+Q+K+
Sbjct: 1 MKGGKSK-----SDTKSAKLSVKSKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HP NKSVA VGKA G+KWKS+SE EKAP+V +AEKRK +Y KNM+ YNK+ A+G E
Sbjct: 56 DHPKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYEKNMKAYNKRQAEGPK-DE 114
Query: 121 ENESDKSKSEVN 132
+ ESDKS SEVN
Sbjct: 115 DVESDKSVSEVN 126
>gi|295913700|gb|ADG58091.1| transcription factor [Lycoris longituba]
Length = 162
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 88/121 (72%), Gaps = 6/121 (4%)
Query: 1 MKGGRSKADAVG-TDSKL--KSKGARAGKRTAKPKA---AKDPNKPKRPPSAFFVFMEEF 54
MKGG+SKAD D++L K K A + K KDPNKPKRPPSAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 60
Query: 55 RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLAD 114
RKQFKE +PNNK V+ VGKAAG+KWKSMS EKAP+ +A KRK++YNK M YNK+LAD
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKKLAD 120
Query: 115 G 115
G
Sbjct: 121 G 121
>gi|295913475|gb|ADG57987.1| transcription factor [Lycoris longituba]
Length = 162
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 88/121 (72%), Gaps = 6/121 (4%)
Query: 1 MKGGRSKADAVG-TDSKL--KSKGARAGKRTAKPKA---AKDPNKPKRPPSAFFVFMEEF 54
MKGG+SKAD D++L K K A + K KDPNKPKRPPSAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPVVKKAKEGKDPNKPKRPPSAFFVFMEEF 60
Query: 55 RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLAD 114
RKQFKE +PNNK V+ VGKAAG+KWKSMS EKAP+ +A KRK++YNK M YNK+LAD
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNKKLAD 120
Query: 115 G 115
G
Sbjct: 121 G 121
>gi|22135473|gb|AAM93217.1|AF527616_1 nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|194698578|gb|ACF83373.1| unknown [Zea mays]
gi|414886616|tpg|DAA62630.1| TPA: HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 94/133 (70%), Gaps = 11/133 (8%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S+A + DS+L + K KA KDPNKPKRPPSAFFVFMEEFRK +KE HPN
Sbjct: 2 KSRARSTAGDSRLSVR---------KTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPN 52
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
K V+ +GKA G+KWKS+S+ EKAP+V +AEK K++Y K + YN + + A+ +S
Sbjct: 53 VKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQSGDPTAS--GDS 110
Query: 125 DKSKSEVNDEDDE 137
DKSKSEVNDED+E
Sbjct: 111 DKSKSEVNDEDEE 123
>gi|162459697|ref|NP_001105649.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
gi|17017392|gb|AAL33650.1|AF440221_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 94/133 (70%), Gaps = 11/133 (8%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S+A + DS+L + K KA KDPNKPKRPPSAFFVFMEEFRK +KE HPN
Sbjct: 2 KSRARSTAGDSRLSVR---------KTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPN 52
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
K V+ +GKA G+KWKS+S+ EKAP+V +AEK K++Y K + YN + + A+ +S
Sbjct: 53 VKQVSLIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQSGDPTAS--GDS 110
Query: 125 DKSKSEVNDEDDE 137
DKSKSEVNDED+E
Sbjct: 111 DKSKSEVNDEDEE 123
>gi|388497528|gb|AFK36830.1| unknown [Medicago truncatula]
Length = 155
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 93/120 (77%), Gaps = 5/120 (4%)
Query: 1 MKGGRSKADAVGTDSKLKS--KGARA---GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFR 55
MKG +SK ++ D+KL KGA A G++ AK K KDPNKPKRPPSAFFVFME+FR
Sbjct: 1 MKGAKSKGESKKADAKLAVNKKGAAATKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 56 KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
KQFK+ +P+NK+V+ VGKAAG KWKS+SE EKAP+ +AEKRK++Y K M+ YNK+ A+G
Sbjct: 61 KQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMKAYNKKQAEG 120
>gi|388497036|gb|AFK36584.1| unknown [Medicago truncatula]
Length = 155
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 93/120 (77%), Gaps = 5/120 (4%)
Query: 1 MKGGRSKADAVGTDSKLKS--KGARA---GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFR 55
MKG +SK ++ D+KL KGA A G++ AK K KDPNKPKRPPSAFFVFME+FR
Sbjct: 1 MKGAKSKGESKKADAKLAVNKKGAVATKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 56 KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
KQFK+ +P+NK+V+ VGKAAG KWKS+SE EKAP+ +AEKRK++Y K M+ YNK+ A+G
Sbjct: 61 KQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMKAYNKKQAEG 120
>gi|295913696|gb|ADG58089.1| transcription factor [Lycoris longituba]
Length = 183
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/121 (63%), Positives = 85/121 (70%), Gaps = 6/121 (4%)
Query: 1 MKGGRSKADAVG-TDSKLKSKGARA-----GKRTAKPKAAKDPNKPKRPPSAFFVFMEEF 54
MKGG+SK D D+KL K A K KA DPNKPKRPPSAFFVFMEEF
Sbjct: 22 MKGGKSKPDTSKKADAKLSVKRKAAEKPAKKPAVKKAKAGTDPNKPKRPPSAFFVFMEEF 81
Query: 55 RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLAD 114
RKQFKE +PNNK V+ VGKAAG+KWKSMS EKAP+ +A KRK DYNK M YNK+LAD
Sbjct: 82 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAAKRKVDYNKTMVAYNKKLAD 141
Query: 115 G 115
G
Sbjct: 142 G 142
>gi|116781378|gb|ABK22074.1| unknown [Picea sitchensis]
gi|224284710|gb|ACN40086.1| unknown [Picea sitchensis]
Length = 154
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 85/116 (73%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
L S + KR AKPKA KDPN+PKRPP+AFFV++EEFRK FK+ HP+ K V VGKA G
Sbjct: 25 LLSAKEKPNKRQAKPKAVKDPNQPKRPPTAFFVYLEEFRKTFKQKHPDVKGVTAVGKACG 84
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
+KWK MSE EKAP++ +A +++++Y+ M Y K+ GV +A ES+KSKSE+N
Sbjct: 85 DKWKEMSEAEKAPYLAKAAQKRAEYDVTMTAYKKKQEVGVQSATPEESEKSKSELN 140
>gi|357484151|ref|XP_003612362.1| HMG1/2-like protein [Medicago truncatula]
gi|355513697|gb|AES95320.1| HMG1/2-like protein [Medicago truncatula]
Length = 140
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 96/125 (76%), Gaps = 3/125 (2%)
Query: 8 ADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS 67
+DA D++LK KGA G T + K AKDPNKPKRPPSAFFVFM EFR++FK+ +P+NKS
Sbjct: 6 SDAKPADNRLKRKGAGTG--TKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNKS 63
Query: 68 VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 127
VA VGKA G++WK++S+ +KAPF+ +A+K K +Y K M+ YN + + NA+EE S+KS
Sbjct: 64 VAVVGKAGGKEWKALSDADKAPFIAKADKLKEEYEKTMRAYNMGITEK-NASEEEGSEKS 122
Query: 128 KSEVN 132
KSEVN
Sbjct: 123 KSEVN 127
>gi|357159916|ref|XP_003578598.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 128
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 2/122 (1%)
Query: 15 SKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKA 74
++++S G + K KA KDPN+PKRPPSAFFVFME FRK +KE HP+ K V+ VGKA
Sbjct: 3 ARVRSSGGDSRLSVRKTKAEKDPNQPKRPPSAFFVFMEGFRKDYKEKHPDVKQVSVVGKA 62
Query: 75 AGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDE 134
G +WKS+S+ EKAPFV +AEK K++YNK M YN A G A+ +SDKSKSEVNDE
Sbjct: 63 GGAEWKSLSDAEKAPFVAKAEKLKAEYNKKMVAYNNPQAGGQEAS--GDSDKSKSEVNDE 120
Query: 135 DD 136
D
Sbjct: 121 AD 122
>gi|295913196|gb|ADG57857.1| transcription factor [Lycoris longituba]
Length = 143
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/103 (67%), Positives = 81/103 (78%), Gaps = 2/103 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA KDPNKPKRPPSAFFVFME FRK+FK+ +P NKS+A VGKA GE+WKSMS+ EKAPFV
Sbjct: 25 KAGKDPNKPKRPPSAFFVFMEGFRKEFKDKNPKNKSIAAVGKAGGERWKSMSDSEKAPFV 84
Query: 92 ERAEKRKSDYNKNMQDYNK--QLADGVNAAEENESDKSKSEVN 132
+AEK K++Y K M +NK +L D EE ESDKSKSEVN
Sbjct: 85 SKAEKLKAEYGKKMNAHNKGEKLRDDNAELEEEESDKSKSEVN 127
>gi|295913393|gb|ADG57949.1| transcription factor [Lycoris longituba]
Length = 162
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/121 (63%), Positives = 85/121 (70%), Gaps = 6/121 (4%)
Query: 1 MKGGRSKADAVG-TDSKLKSKGARA-----GKRTAKPKAAKDPNKPKRPPSAFFVFMEEF 54
MKGG+SK D D+KL K A K KA DPNKPKRPPSAFFVFMEEF
Sbjct: 1 MKGGKSKPDTSKKADAKLSVKRKAAEKPAKKPAVKKAKAGTDPNKPKRPPSAFFVFMEEF 60
Query: 55 RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLAD 114
RKQFKE +PNNK V+ VGKAAG+KWKSMS EKAP+ +A KRK DYNK M YNK+LAD
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAAKRKVDYNKTMVAYNKKLAD 120
Query: 115 G 115
G
Sbjct: 121 G 121
>gi|79318295|ref|NP_001031075.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191889|gb|AEE30010.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 147
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 83/116 (71%), Gaps = 5/116 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKG +SKA+ T + K A+ K AAKDPNKPKRP SAFFVFME+FR +KE
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAK-----GAAKDPNKPKRPSSAFFVFMEDFRVTYKE 55
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGV 116
HP NKSVA VGKA GEKWKS+S+ EKAP+V +A+KRK +Y KNM+ YNK+L +
Sbjct: 56 EHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLVIAL 111
>gi|238013344|gb|ACR37707.1| unknown [Zea mays]
gi|414590135|tpg|DAA40706.1| TPA: HMG1/2-like protein [Zea mays]
Length = 127
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 90/133 (67%), Gaps = 10/133 (7%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S+A + G DS+L + K K KDPNKPKRPP+AFFVFMEEFRK +KE HPN
Sbjct: 2 KSRARSGGGDSRLSVR---------KTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPN 52
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
K V+ +GKA G+ WKS+S+ EKAP+V +AEK K +Y K M YN + + G +S
Sbjct: 53 VKQVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGG-GPTLSGDS 111
Query: 125 DKSKSEVNDEDDE 137
DKSKSEVND D+E
Sbjct: 112 DKSKSEVNDGDEE 124
>gi|295913099|gb|ADG57812.1| transcription factor [Lycoris longituba]
Length = 120
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/103 (68%), Positives = 82/103 (79%), Gaps = 2/103 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA KDPNKPKR PSAFFVFME+FRK+FKE +P NKSVA VGKA GE+WKSMS+ EKAPFV
Sbjct: 2 KAGKDPNKPKRAPSAFFVFMEDFRKEFKEKNPKNKSVAAVGKAGGERWKSMSDAEKAPFV 61
Query: 92 ERAEKRKSDYNKNMQDYNK--QLADGVNAAEENESDKSKSEVN 132
++AEK K++Y K M YNK ++ D EE ESDKSKSEVN
Sbjct: 62 KKAEKLKAEYEKKMVAYNKGEKVKDDNADVEEEESDKSKSEVN 104
>gi|125564627|gb|EAZ10007.1| hypothetical protein OsI_32309 [Oryza sativa Indica Group]
Length = 139
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 88/126 (69%), Gaps = 16/126 (12%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE----- 84
K KA KDPNKPKRPPSAFFVFME+FRK +KE HPN K V+ +GKA G+KWKSM++
Sbjct: 18 KTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDAIGGY 77
Query: 85 -------DEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDE 137
+KAPFV +AEK K++Y K + YN + A G A +SDKSKSEVNDED
Sbjct: 78 VVVAVPCKDKAPFVTKAEKLKAEYTKKIDAYNNKQAGG--PATSGDSDKSKSEVNDED-- 133
Query: 138 EGSGEE 143
EGSG+E
Sbjct: 134 EGSGDE 139
>gi|222642048|gb|EEE70180.1| hypothetical protein OsJ_30257 [Oryza sativa Japonica Group]
Length = 139
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 88/126 (69%), Gaps = 16/126 (12%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE----- 84
K KA KDPNKPKRPPSAFFVFME+FRK +KE HPN K V+ +GKA G+KWKSM++
Sbjct: 18 KTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDAIRGY 77
Query: 85 -------DEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDE 137
+KAPFV +AEK K++Y K + YN + A G A +SDKSKSEVNDED
Sbjct: 78 VVVAVPCKDKAPFVTKAEKLKAEYTKKIDAYNNKQAGG--PATSGDSDKSKSEVNDED-- 133
Query: 138 EGSGEE 143
EGSG+E
Sbjct: 134 EGSGDE 139
>gi|304651500|gb|ADM47612.1| high mobility group protein [Hevea brasiliensis]
Length = 146
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 84/115 (73%), Gaps = 1/115 (0%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SK+D + +L A KAAKDPNKPKRP SAFFVFMEEFR+Q+K+
Sbjct: 1 MKGGKSKSDTKAAN-RLSVNKKPAKASKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK 59
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
HP NKSVA VGKA G+KWKS+SE EKAP+V +AEKRK +Y K ++ YNK A+G
Sbjct: 60 EHPKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYEKKLKAYNKGQAEG 114
>gi|226505018|ref|NP_001151148.1| LOC100284781 [Zea mays]
gi|195644628|gb|ACG41782.1| HMG1/2-like protein [Zea mays]
Length = 127
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 89/133 (66%), Gaps = 10/133 (7%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S+A + G DS+L + K K KDPNKPKRPP+ FFVFMEEFRK +KE HPN
Sbjct: 2 KSRARSGGGDSRLSVR---------KTKVEKDPNKPKRPPTTFFVFMEEFRKDYKEKHPN 52
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
K V+ +GKA G+ WKS+S+ EKAP+V +AEK K +Y K M YN + + G +S
Sbjct: 53 VKQVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGG-GPTLSGDS 111
Query: 125 DKSKSEVNDEDDE 137
DKSKSEVND D+E
Sbjct: 112 DKSKSEVNDGDEE 124
>gi|224083306|ref|XP_002306980.1| high mobility group family [Populus trichocarpa]
gi|222856429|gb|EEE93976.1| high mobility group family [Populus trichocarpa]
Length = 160
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/119 (59%), Positives = 83/119 (69%), Gaps = 4/119 (3%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKP----KAAKDPNKPKRPPSAFFVFMEEFRK 56
MKGGRSK+D + K + G A KAAKDPNKPKRP SAFFVFMEEFR+
Sbjct: 1 MKGGRSKSDTKSAKLSVTKKPTKGGGGGAAARKSGKAAKDPNKPKRPASAFFVFMEEFRE 60
Query: 57 QFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
Q+K HP NKSVA VGKA G+KWKS+SE EKAPFV +A+KRK +Y K M+ YNK+ G
Sbjct: 61 QYKREHPKNKSVAAVGKAGGDKWKSLSEAEKAPFVAKADKRKVEYEKKMKAYNKEQLKG 119
>gi|255539248|ref|XP_002510689.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223551390|gb|EEF52876.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 145
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 85/115 (73%), Gaps = 2/115 (1%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SKADA +SKL KAAKDPNKPKRP SAFFVFMEEFR+Q+K+
Sbjct: 1 MKGGKSKADA--KNSKLSVNKKPVKATKKAGKAAKDPNKPKRPASAFFVFMEEFREQYKK 58
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
HP NKSVA VGKA G++WKSMSE EKAPFV +AEKRK +Y K ++ YNK A+G
Sbjct: 59 EHPKNKSVAAVGKAGGDRWKSMSESEKAPFVAKAEKRKIEYEKKLKAYNKGQAEG 113
>gi|295913307|gb|ADG57910.1| transcription factor [Lycoris longituba]
Length = 138
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPKRPPSAFFVFMEEFRKQFKE +PNNK V+ VGKAAG+KWKSMS EKAP+ +A
Sbjct: 18 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAA 77
Query: 96 KRKSDYNKNMQDYNKQLADG 115
KRK DYNK M YNK+LADG
Sbjct: 78 KRKVDYNKTMVAYNKKLADG 97
>gi|42572635|ref|NP_974413.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|222423104|dbj|BAH19531.1| AT3G51880 [Arabidopsis thaliana]
gi|332645335|gb|AEE78856.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 185
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA KDPNKPKR PSAFFVF+E+FR FK+ +PN K+V+ VGKA G+KWKSMS+ EKAP+
Sbjct: 45 KAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYE 104
Query: 92 ERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGE 142
E+A KRK++Y K M YNK L +G +ES+KS+SE+NDED E SGE
Sbjct: 105 EKAAKRKAEYEKQMDAYNKNLEEG-----SDESEKSRSEINDED--EASGE 148
>gi|357640485|gb|AET87126.1| high mobility group B2 protein [Brassica napus]
Length = 145
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 94/132 (71%), Gaps = 3/132 (2%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SK + SKL A AAKDPNKPKRP SAFFVFME+FR+ +K+
Sbjct: 1 MKGGKSKTET--RSSKLSVAKKPAKAAGGSKAAAKDPNKPKRPASAFFVFMEDFRQTYKK 58
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
HPNNKSVA VGKA GEKWKS+S+ EKAPFV +A+KRK +Y K M+ YNK+L +G +
Sbjct: 59 DHPNNKSVAAVGKAGGEKWKSLSDSEKAPFVAKADKRKVEYEKTMKAYNKKLEEG-PKED 117
Query: 121 ENESDKSKSEVN 132
E ESDKS SEVN
Sbjct: 118 EEESDKSVSEVN 129
>gi|297819892|ref|XP_002877829.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
gi|297323667|gb|EFH54088.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA KDPNKPKR PSAFFVF+E+FR FK+ +PN K+V+ VGKA G+KWKSMS+ EKAP+
Sbjct: 45 KAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYE 104
Query: 92 ERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGE 142
E+A KRK++Y K M YNK + +G +ES+KS+SEVNDED E SGE
Sbjct: 105 EKAAKRKAEYEKQMDAYNKNMEEG-----SDESEKSRSEVNDED--EASGE 148
>gi|346467231|gb|AEO33460.1| hypothetical protein [Amblyomma maculatum]
Length = 115
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 75/101 (74%), Gaps = 5/101 (4%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPNKPKRPP+ FFVFME FRKQ+KEAHP NKSVA VGKA GEKWKS+SE EKA F+
Sbjct: 4 KGEKDPNKPKRPPTGFFVFMEGFRKQYKEAHPKNKSVAVVGKAGGEKWKSLSESEKAVFL 63
Query: 92 ERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
+AEK +S+Y K + Y K +E ESDKSKSEVN
Sbjct: 64 SKAEKLRSEYQKKIDAYEKG-----QHVDEEESDKSKSEVN 99
>gi|15231065|ref|NP_190756.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|145332807|ref|NP_001078269.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|75274976|sp|O49595.1|HMGB1_ARATH RecName: Full=High mobility group B protein 1; AltName: Full=High
mobility group protein A; Short=AtHMGalpha; Short=HMG
alpha; AltName: Full=Nucleosome/chromatin assembly
factor group D 01; Short=Nucleosome/chromatin assembly
factor group D 1
gi|2832357|emb|CAA74400.1| HMG protein [Arabidopsis thaliana]
gi|3068715|gb|AAC14415.1| unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|21360557|gb|AAM47475.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|332645334|gb|AEE78855.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645336|gb|AEE78857.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 178
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 83/108 (76%), Gaps = 5/108 (4%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA KDPNKPKR PSAFFVF+E+FR FK+ +PN K+V+ VGKA G+KWKSMS+ EKAP+
Sbjct: 45 KAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYE 104
Query: 92 ERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEG 139
E+A KRK++Y K M YNK L +G +ES+KS+SE+NDED+ G
Sbjct: 105 EKAAKRKAEYEKQMDAYNKNLEEG-----SDESEKSRSEINDEDEASG 147
>gi|413935042|gb|AFW69593.1| high mobility group protein1 [Zea mays]
Length = 220
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 3/112 (2%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQF 58
MKG +SK A D+KL KSKGA + K KA KDPNKPKR PSAFFVFMEEFRK+F
Sbjct: 1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 59
Query: 59 KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
KE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK + YNK
Sbjct: 60 KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
>gi|357123079|ref|XP_003563240.1| PREDICTED: DNA-binding protein MNB1B-like [Brachypodium distachyon]
Length = 160
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 87/113 (76%), Gaps = 4/113 (3%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQ 57
MKG +SK AV D+KL KSKGA + + K KA KDPNKPKR PSAFFVFM+EFRK+
Sbjct: 1 MKGAKSKG-AVKADTKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMDEFRKE 59
Query: 58 FKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
FKE +P NKSVA VGKAAGE+WK++SE +KAP+V +A K K++YNK + YNK
Sbjct: 60 FKEKNPKNKSVAAVGKAAGERWKTLSESDKAPYVAKANKLKAEYNKAIAAYNK 112
>gi|397396|emb|CAA46876.1| DNA-binding protein [Zea mays]
Length = 168
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 3/112 (2%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQF 58
MKG +SK A D+KL KSKGA + K KA KDPNKPKR PSAFFVFMEEFRK+F
Sbjct: 12 MKGAKSK-GAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 70
Query: 59 KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
KE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK + YNK
Sbjct: 71 KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 122
>gi|293335943|ref|NP_001167650.1| high mobility group protein1 [Zea mays]
gi|123378|sp|P27347.1|MNB1B_MAIZE RecName: Full=DNA-binding protein MNB1B; AltName: Full=HMG1-like
protein
gi|22329|emb|CAA41220.1| high mobility group protein [Zea mays]
gi|5441502|emb|CAB46752.1| HMGa protein [Zea mays]
gi|22347617|gb|AAM95942.1| nucleosome/chromatin assembly factor group D protein [Zea mays]
gi|194701148|gb|ACF84658.1| unknown [Zea mays]
gi|194702316|gb|ACF85242.1| unknown [Zea mays]
gi|194703290|gb|ACF85729.1| unknown [Zea mays]
gi|195606194|gb|ACG24927.1| DNA-binding protein MNB1B [Zea mays]
gi|195612638|gb|ACG28149.1| DNA-binding protein MNB1B [Zea mays]
gi|195618138|gb|ACG30899.1| DNA-binding protein MNB1B [Zea mays]
gi|195618904|gb|ACG31282.1| DNA-binding protein MNB1B [Zea mays]
gi|195619012|gb|ACG31336.1| DNA-binding protein MNB1B [Zea mays]
gi|195619124|gb|ACG31392.1| DNA-binding protein MNB1B [Zea mays]
gi|195638824|gb|ACG38880.1| DNA-binding protein MNB1B [Zea mays]
gi|195642004|gb|ACG40470.1| DNA-binding protein MNB1B [Zea mays]
gi|223972731|gb|ACN30553.1| unknown [Zea mays]
gi|223972797|gb|ACN30586.1| unknown [Zea mays]
gi|223973279|gb|ACN30827.1| unknown [Zea mays]
gi|223974975|gb|ACN31675.1| unknown [Zea mays]
gi|413935043|gb|AFW69594.1| high mobility group protein1 [Zea mays]
Length = 157
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 3/112 (2%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQF 58
MKG +SK A D+KL KSKGA + K KA KDPNKPKR PSAFFVFMEEFRK+F
Sbjct: 1 MKGAKSK-GAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 59
Query: 59 KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
KE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK + YNK
Sbjct: 60 KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
>gi|449461783|ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 169
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 87/106 (82%), Gaps = 4/106 (3%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA KDPNKPKRPPSAFFVF+EEFRK++K +PN K+V+ VGKA GEKWKS+S EKAP+
Sbjct: 47 KAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYE 106
Query: 92 ERAEKRKSDYNKNMQDY-NKQLADGVNAAEENESDKSKSEVNDEDD 136
+A KRK++Y K M+ Y +K++A +AA++ ES++SKSEVNDED+
Sbjct: 107 AKAAKRKAEYEKLMRAYDSKKVA---SAADDEESERSKSEVNDEDE 149
>gi|15237040|ref|NP_195282.1| high mobility group B5 protein [Arabidopsis thaliana]
gi|75219649|sp|O49597.1|HMGB5_ARATH RecName: Full=High mobility group B protein 5; AltName: Full=High
mobility group protein D; Short=AtHMGdelta; Short=HMG
delta; AltName: Full=Nucleosome/chromatin assembly
factor group D 05; Short=Nucleosome/chromatin assembly
factor group D 5
gi|2832363|emb|CAA74404.1| HMG protein [Arabidopsis thaliana]
gi|3367575|emb|CAA20027.1| HMG delta protein [Arabidopsis thaliana]
gi|7270508|emb|CAB80273.1| HMG delta protein [Arabidopsis thaliana]
gi|21553743|gb|AAM62836.1| HMG delta protein [Arabidopsis thaliana]
gi|98961063|gb|ABF59015.1| At4g35570 [Arabidopsis thaliana]
gi|222423786|dbj|BAH19859.1| AT4G35570 [Arabidopsis thaliana]
gi|332661132|gb|AEE86532.1| high mobility group B5 protein [Arabidopsis thaliana]
Length = 125
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 88/115 (76%), Gaps = 6/115 (5%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MK +++ ++ TD +LK +G + GK+T KDPN+PK+PPS FFVF+++FRK+F
Sbjct: 1 MKDNQTEVESRSTDDRLKVRGNKVGKKT------KDPNRPKKPPSPFFVFLDDFRKEFNL 54
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
A+P+NKSV VG+AAG+KWK+M+E+E+APFV +++ +K++Y MQ YN +LA+G
Sbjct: 55 ANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANG 109
>gi|436424|emb|CAA54168.1| HMG 1 protein [Pisum sativum]
Length = 154
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 91/120 (75%), Gaps = 5/120 (4%)
Query: 1 MKGGRSKADAVGTDSKLKS--KGARAGKRTAKPKAA---KDPNKPKRPPSAFFVFMEEFR 55
MKGG+SK ++ ++KL KGA A K KP KDPNKPKRPPSAFFVFME+FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAPATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 56 KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
KQFK+ + +NK+V+ VGKAAG KWKSM+E EKAP+ +AEKRK++Y K+M+ YNK+ A+G
Sbjct: 61 KQFKKGNADNKAVSAVGKAAGAKWKSMTEAEKAPYAAKAEKRKAEYEKSMKSYNKKQAEG 120
>gi|225448398|ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
vinifera]
gi|147854340|emb|CAN83423.1| hypothetical protein VITISV_023376 [Vitis vinifera]
Length = 166
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 86/127 (67%), Gaps = 21/127 (16%)
Query: 23 RAGKRTAKPKAAK--------------DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV 68
R GKR A KA K DPNKPKRPPSAFFVF+EEFRK +K+ HPN K+V
Sbjct: 25 RLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
Query: 69 ATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ---LADGVNAAEENESD 125
+ VGKA GEKWKS+SE +KAP+ +A KRKSDY K M YNK+ +AD +E ESD
Sbjct: 85 SAVGKAGGEKWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNKKQESMADD----DEEESD 140
Query: 126 KSKSEVN 132
+SKSEVN
Sbjct: 141 RSKSEVN 147
>gi|255574381|ref|XP_002528104.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223532493|gb|EEF34283.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 171
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPKRPPSAFFVF+EEFRK FK+ +P+ SVA VGKA G KWKSMS EKAP+ +A
Sbjct: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPSVTSVAAVGKAGGAKWKSMSSAEKAPYEAKAA 110
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDE 137
K+K +Y K M YNK+ + EE ESD+SKSEVNDEDDE
Sbjct: 111 KKKDEYGKLMNAYNKKQESTADDGEE-ESDRSKSEVNDEDDE 151
>gi|351725417|ref|NP_001235556.1| uncharacterized protein LOC100305961 [Glycine max]
gi|255627113|gb|ACU13901.1| unknown [Glycine max]
Length = 169
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 81/104 (77%), Gaps = 3/104 (2%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPKRPPSAF VF+EEFRK FK +P K+V+ VGKA GEKWKS+S EKAP+ +A
Sbjct: 49 DPNKPKRPPSAFLVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAA 108
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEG 139
KRK++Y K ++ Y K+ A ++A+++ESDKSKSEVNDEDD G
Sbjct: 109 KRKAEYEKLIKAYEKKQA---SSADDDESDKSKSEVNDEDDASG 149
>gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis]
gi|224286844|gb|ACN41125.1| unknown [Picea sitchensis]
gi|294461904|gb|ADE76508.1| unknown [Picea sitchensis]
Length = 151
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPKRPPSAFFVF++EFRK++K+A+PN SV+ VGKA GEKW+++S+ EKAP+V +AE
Sbjct: 42 DPNKPKRPPSAFFVFLDEFRKEYKQANPNANSVSAVGKAGGEKWRALSDAEKAPYVAKAE 101
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
K+K++Y K+M YNKQ E ESDKSKSEVN
Sbjct: 102 KKKAEYEKSMATYNKQKDSNTEEVAE-ESDKSKSEVN 137
>gi|115470082|ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|3885888|gb|AAC78104.1| high mobility group protein [Oryza sativa Japonica Group]
gi|23345287|gb|AAN28722.1| HMG1 protein [Oryza sativa Indica Group]
gi|30267833|gb|AAP21609.1| HMGB1 [Oryza sativa Indica Group]
gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa Japonica Group]
gi|113596680|dbj|BAF20554.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|213959190|gb|ACJ54929.1| HMG protein [Oryza sativa Japonica Group]
gi|215692803|dbj|BAG88247.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636260|gb|EEE66392.1| hypothetical protein OsJ_22728 [Oryza sativa Japonica Group]
Length = 157
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 86/113 (76%), Gaps = 4/113 (3%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQ 57
MKG +SK A D+KL KSKGA + + K KA KDPNKPKR PSAFFVFMEEFRK+
Sbjct: 1 MKGAKSK-GAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKE 59
Query: 58 FKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
FKE +P NKSVA VGKAAG++WKS++E +KAP+V +A K K++YNK + YNK
Sbjct: 60 FKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNK 112
>gi|414590133|tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 140
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 84/126 (66%), Gaps = 10/126 (7%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S+A + G DS+L + K K KDPNKPKRPP+AFFVFMEEFRK +KE HPN
Sbjct: 22 KSRARSGGGDSRLSVR---------KTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPN 72
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
K V+ +GKA G+ WKS+S+ EKAP+V +AEK K +Y K M YN + + G +S
Sbjct: 73 VKQVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGG-GPTLSGDS 131
Query: 125 DKSKSE 130
DKSKSE
Sbjct: 132 DKSKSE 137
>gi|414886617|tpg|DAA62631.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 119
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 87/126 (69%), Gaps = 11/126 (8%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S+A + DS+L + K KA KDPNKPKRPPSAFFVFMEEFRK +KE HPN
Sbjct: 2 KSRARSTAGDSRLSVR---------KTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPN 52
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
K V+ +GKA G+KWKS+S+ EKAP+V +AEK K++Y K + YN + + A+ +S
Sbjct: 53 VKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQSGDPTAS--GDS 110
Query: 125 DKSKSE 130
DKSKSE
Sbjct: 111 DKSKSE 116
>gi|414590134|tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 120
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 84/126 (66%), Gaps = 10/126 (7%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S+A + G DS+L + K K KDPNKPKRPP+AFFVFMEEFRK +KE HPN
Sbjct: 2 KSRARSGGGDSRLSVR---------KTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPN 52
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
K V+ +GKA G+ WKS+S+ EKAP+V +AEK K +Y K M YN + + G +S
Sbjct: 53 VKQVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGG-GPTLSGDS 111
Query: 125 DKSKSE 130
DKSKSE
Sbjct: 112 DKSKSE 117
>gi|168032698|ref|XP_001768855.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168032700|ref|XP_001768856.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679967|gb|EDQ66408.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679968|gb|EDQ66409.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 81/108 (75%), Gaps = 4/108 (3%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPP+AFF+F+ EFR+ FK +PN K V VGKA GEKWKSMSE EK PF+
Sbjct: 4 KKLKDPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEAEKQPFM 63
Query: 92 ERAEKRKSDYNKNMQDYN-KQLADGVNAAEENESDKSKSEVNDEDDEE 138
+A ++KS+Y+K + YN KQ A+ V A ESDKSKSE+ND++DEE
Sbjct: 64 TKAVQKKSEYDKTISAYNKKQDAEEVEA---EESDKSKSEINDDEDEE 108
>gi|308569658|gb|ADO34794.1| high mobility group box 4 protein [Gossypium hirsutum]
Length = 148
Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKGG+SK+D + + K + + + KAAKDPNKPKRP SAFFVFMEEFR+Q+K+
Sbjct: 1 MKGGKSKSDTKSSRLAVNKKSSAKAGKKSG-KAAKDPNKPKRPASAFFVFMEEFREQYKK 59
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
HP NKSVA VGKA GEKWKS+S+ EKAP++ +AEKRK +Y KNM+ Y K+ A+
Sbjct: 60 EHPKNKSVAAVGKAGGEKWKSLSDAEKAPYIAKAEKRKVEYEKNMKAYTKRQAEA 114
>gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa]
Length = 151
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 88/118 (74%), Gaps = 3/118 (2%)
Query: 1 MKGGRSKAD---AVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQ 57
MKGGRSK+D A + +K +KG A KAAKDPNKPKRP SAFFVFMEEFR+Q
Sbjct: 1 MKGGRSKSDTKSAKLSVNKKPTKGGAAAAAKKSGKAAKDPNKPKRPASAFFVFMEEFREQ 60
Query: 58 FKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+K+ HP NKSVA VGKA G+KWKS+S EKAP+V +A+KRK +Y K M+ YNK+ A+G
Sbjct: 61 YKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEG 118
>gi|125583208|gb|EAZ24139.1| hypothetical protein OsJ_07880 [Oryza sativa Japonica Group]
Length = 170
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 91/128 (71%), Gaps = 9/128 (7%)
Query: 13 TDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVG 72
T S LK+ G AGKR K A KPKRPPSAFFVFM EFR++++ AHP+NKSVA V
Sbjct: 36 TRSMLKAAGG-AGKR----KKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVS 90
Query: 73 KAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENE----SDKSK 128
KAAGEKW++MSE EKAP+V++A ++K DY K +++K+ + A+ ++ SDKSK
Sbjct: 91 KAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSK 150
Query: 129 SEVNDEDD 136
SEV+D+ D
Sbjct: 151 SEVDDDQD 158
>gi|312281849|dbj|BAJ33790.1| unnamed protein product [Thellungiella halophila]
Length = 185
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 88/119 (73%), Gaps = 7/119 (5%)
Query: 16 KLKSKGARAGKRTAKP--KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK 73
K K+ A+A KR + +A KDPNKPKR PSAFFVF+E+FR+ FK+ +PN K+V+ VGK
Sbjct: 27 KRKAPAAKATKRETRKEKRAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPNVKAVSAVGK 86
Query: 74 AAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
A G+KWKSMS+ EKAP+ E+A KRK++Y K M YNK + +G +ES+KS+SEVN
Sbjct: 87 AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKLMDAYNKNMEEG-----SDESEKSRSEVN 140
>gi|195619220|gb|ACG31440.1| HMG1/2-like protein [Zea mays]
Length = 139
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 82/109 (75%), Gaps = 3/109 (2%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
KPKRPPSAFFVFM EFR+Q++ HP NKSVATV KAAGEKW++MS+ EK P+V++A ++K
Sbjct: 32 KPKRPPSAFFVFMSEFRQQYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 99 SDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEEEDDD 147
DY K +++K+ + A+ + D SKSEV+DED GS +EE+DD
Sbjct: 92 QDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDED---GSSDEENDD 137
>gi|224065681|ref|XP_002301918.1| high mobility group family [Populus trichocarpa]
gi|222843644|gb|EEE81191.1| high mobility group family [Populus trichocarpa]
Length = 152
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 89/118 (75%), Gaps = 3/118 (2%)
Query: 1 MKGGRSKAD---AVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQ 57
MKGGRSK+D A + +K +KGA A KAAKDPNKPKRP SAFFVFMEEFR+Q
Sbjct: 1 MKGGRSKSDTKSAKLSVNKKPTKGAAAAAAKKSGKAAKDPNKPKRPASAFFVFMEEFREQ 60
Query: 58 FKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+K+ HP NKSVA VGKA G+KWKS+S EKAP+V +A+KRK +Y K M+ YNK+ A+G
Sbjct: 61 YKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEG 118
>gi|47027098|gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis]
Length = 158
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 66/82 (80%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDPNKPKRPPSAFFVFME+FRKQFKE +PNNK V+ VGKA KWK+MS EKAPF R
Sbjct: 37 VKDPNKPKRPPSAFFVFMEDFRKQFKEKNPNNKQVSVVGKACWGKWKTMSAAEKAPFEAR 96
Query: 94 AEKRKSDYNKNMQDYNKQLADG 115
A KRK+DYNK M YNK+ ++G
Sbjct: 97 AAKRKADYNKVMVAYNKKQSEG 118
>gi|407971018|ref|NP_001238631.1| uncharacterized protein LOC100499704 [Glycine max]
gi|255625939|gb|ACU13314.1| unknown [Glycine max]
Length = 166
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 3/97 (3%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPKRPPSAFFVF+EEFRK FK +PN K+V+ VGKA GEKWKS+S EKAP+ +A
Sbjct: 49 DPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSAEKAPYESKAA 108
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
KRK++Y K ++ Y+K+ A ++A++ ESDKSKSEVN
Sbjct: 109 KRKAEYEKLIKAYDKKQA---SSADDEESDKSKSEVN 142
>gi|334185909|ref|NP_001190062.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645337|gb|AEE78858.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 161
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 78/101 (77%), Gaps = 5/101 (4%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA KDPNKPKR PSAFFVF+E+FR FK+ +PN K+V+ VGKA G+KWKSMS+ EKAP+
Sbjct: 45 KAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYE 104
Query: 92 ERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
E+A KRK++Y K M YNK L +G +ES+KS+SE+N
Sbjct: 105 EKAAKRKAEYEKQMDAYNKNLEEG-----SDESEKSRSEIN 140
>gi|224112525|ref|XP_002316220.1| high mobility group family [Populus trichocarpa]
gi|222865260|gb|EEF02391.1| high mobility group family [Populus trichocarpa]
Length = 176
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 77/107 (71%), Gaps = 6/107 (5%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPNKPKRPPSAFFVF+EEFRK +K+ HPN K+V+ VGKA GEKWKS+S EKAP+ +A
Sbjct: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKA 110
Query: 95 EKRKSDYNKNMQDYNKQLADGVNAAEEN------ESDKSKSEVNDED 135
KRKSDY K M YNK+ ++N +S KSKSEVN ++
Sbjct: 111 AKRKSDYEKLMTAYNKKQDTDDGDDDDNDDDNIEQSHKSKSEVNGQN 157
>gi|950053|emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 84/113 (74%), Gaps = 4/113 (3%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQ 57
MKG +SK A D+KL KSKGA + + K KA KDPNKPKR PSAFFVFM EFR++
Sbjct: 1 MKGAKSK-GAAKADTKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREE 59
Query: 58 FKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
FK+ +P NKSVA VGKAAGE+WKS+SE EKAPFV +A K K +YNK + YNK
Sbjct: 60 FKQKNPKNKSVAAVGKAAGERWKSLSESEKAPFVAKANKLKGEYNKAIASYNK 112
>gi|115447831|ref|NP_001047695.1| Os02g0670400 [Oryza sativa Japonica Group]
gi|50251344|dbj|BAD28320.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|50252158|dbj|BAD28154.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|113537226|dbj|BAF09609.1| Os02g0670400 [Oryza sativa Japonica Group]
Length = 145
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 98/141 (69%), Gaps = 13/141 (9%)
Query: 1 MKGGRSKADAVGT-DSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK 59
MKG KADA + +LK+ G AGKR K A KPKRPPSAFFVFM EFR++++
Sbjct: 1 MKG---KADASKKGEGRLKAAGG-AGKR----KKAAASGKPKRPPSAFFVFMSEFRQEYQ 52
Query: 60 EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
AHP+NKSVA V KAAGEKW++MSE EKAP+V++A ++K DY K +++K+ + A
Sbjct: 53 AAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDKKESTSSKKA 112
Query: 120 EENE----SDKSKSEVNDEDD 136
+ ++ SDKSKSEV+D+ D
Sbjct: 113 KTHDDGEGSDKSKSEVDDDQD 133
>gi|18700443|dbj|BAB85204.1| high mobility group box protein 2 [Oryza sativa Japonica Group]
gi|125540625|gb|EAY87020.1| hypothetical protein OsI_08417 [Oryza sativa Indica Group]
Length = 145
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 97/141 (68%), Gaps = 13/141 (9%)
Query: 1 MKGGRSKADAVG-TDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK 59
MKG KADA + +LK+ G AGKR K A KPKRPPSAFFVFM EFR++++
Sbjct: 1 MKG---KADASKKGEGRLKAAGG-AGKR----KKAAASGKPKRPPSAFFVFMSEFRQEYQ 52
Query: 60 EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
AHP NKSVA V KAAGEKW++MSE EKAP+V++A ++K DY K +++K+ + A
Sbjct: 53 AAHPGNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDKKESTSSKKA 112
Query: 120 EENE----SDKSKSEVNDEDD 136
+ ++ SDKSKSEV+D+ D
Sbjct: 113 KTHDDGEGSDKSKSEVDDDQD 133
>gi|1845195|emb|CAA69605.1| HMGc1 [Zea mays]
gi|5441504|emb|CAB46753.1| HMGc1 protein [Zea mays]
gi|194690322|gb|ACF79245.1| unknown [Zea mays]
gi|194704052|gb|ACF86110.1| unknown [Zea mays]
gi|219885481|gb|ACL53115.1| unknown [Zea mays]
gi|413938184|gb|AFW72735.1| HMG-like nucleosome/chromatin assembly factor D isoform 1 [Zea
mays]
gi|413938185|gb|AFW72736.1| HMG-like nucleosome/chromatin assembly factor D isoform 2 [Zea
mays]
Length = 139
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 82/109 (75%), Gaps = 3/109 (2%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
KPKRPPSAFFVFM EFR++++ HP NKSVATV KAAGEKW++MS+ EK P+V++A ++K
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 99 SDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEEEDDD 147
DY K +++K+ + A+ + D SKSEV+DED GS +EE+DD
Sbjct: 92 QDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDED---GSSDEENDD 137
>gi|295913113|gb|ADG57819.1| transcription factor [Lycoris longituba]
Length = 108
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 75/108 (69%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MKG + KA + KL K K K KA KDPNKPKR SAFFVFME FRK+FKE
Sbjct: 1 MKGRKPKASSTKATDKLAVKKGAPKKTEKKVKAGKDPNKPKRAASAFFVFMEGFRKEFKE 60
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
+P NKSVA VGKA GEKWKSMS+ EKAPFV++AEK K++Y K M Y
Sbjct: 61 KNPKNKSVAAVGKAGGEKWKSMSDAEKAPFVKKAEKLKAEYEKKMVAY 108
>gi|414886615|tpg|DAA62629.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 123
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 75/105 (71%), Gaps = 9/105 (8%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S+A + DS+L + K KA KDPNKPKRPPSAFFVFMEEFRK +KE HPN
Sbjct: 2 KSRARSTAGDSRLSVR---------KTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPN 52
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
K V+ +GKA G+KWKS+S+ EKAP+V +AEK K++Y K + YN
Sbjct: 53 VKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYN 97
>gi|414886614|tpg|DAA62628.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 118
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 75/105 (71%), Gaps = 9/105 (8%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S+A + DS+L + K KA KDPNKPKRPPSAFFVFMEEFRK +KE HPN
Sbjct: 2 KSRARSTAGDSRLSVR---------KTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPN 52
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
K V+ +GKA G+KWKS+S+ EKAP+V +AEK K++Y K + YN
Sbjct: 53 VKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYN 97
>gi|218198917|gb|EEC81344.1| hypothetical protein OsI_24530 [Oryza sativa Indica Group]
Length = 163
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 83/108 (76%), Gaps = 4/108 (3%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQ 57
MKG +SK A D+KL KSKGA + + K KA KDPNKPKR PSAFFVFMEEFRK+
Sbjct: 1 MKGAKSKG-AAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKE 59
Query: 58 FKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
FKE +P NKSVA VGKAAG++WKS++E +KAP+V +A K K++YN+ +
Sbjct: 60 FKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNRPL 107
>gi|162461550|ref|NP_001105075.1| high mobility group box protein2 [Zea mays]
gi|17017394|gb|AAL33651.1|AF440222_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 139
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 81/109 (74%), Gaps = 3/109 (2%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
KPKRPPSAFF FM EFR++++ HP NKSVATV KAAGEKW++MS+ EK P+V++A ++K
Sbjct: 32 KPKRPPSAFFAFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
Query: 99 SDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEEEDDD 147
DY K +++K+ + A+ + D SKSEV+DED GS +EE+DD
Sbjct: 92 QDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDED---GSSDEENDD 137
>gi|729738|sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein
gi|21803|emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
Length = 161
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 84/113 (74%), Gaps = 4/113 (3%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQ 57
MKG +SK A D+KL KSKGA + + K KA KDPNKPKR PSAFFVFM EFR++
Sbjct: 1 MKGAKSK-GAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREE 59
Query: 58 FKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
FK+ +P NKSVA VGKAAGE+WKS+SE EKAP+V +A K K +YNK + YNK
Sbjct: 60 FKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
>gi|359386154|gb|AEV43366.1| group B HMG-box protein [Citrus sinensis]
Length = 165
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 26 KRTAKPKAAK-DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
KRT K+AK DPNKPKRPPSAFFVF+EEFRK +K+ HPN K+V+ VGKA GEKWKS+++
Sbjct: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
Query: 85 DEKAPFVERAEKRKSDYNKNMQDYNKQ 111
EKAPF +A KRK DY K M YNK+
Sbjct: 101 AEKAPFEAKAAKRKLDYEKLMTAYNKK 127
>gi|224098541|ref|XP_002311212.1| high mobility group family [Populus trichocarpa]
gi|222851032|gb|EEE88579.1| high mobility group family [Populus trichocarpa]
Length = 179
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 81/120 (67%), Gaps = 5/120 (4%)
Query: 26 KRTAKPKAAK-DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
KR AK K K DP+KPKRPPS+FFVF+EEFRK +K+ HPN K+V+ VGKA GEKWKSMS
Sbjct: 41 KRAAKEKITKKDPDKPKRPPSSFFVFLEEFRKIYKQEHPNMKAVSAVGKAGGEKWKSMSA 100
Query: 85 DEKAPFVERAEKRKSDYNKNMQDYNKQ----LADGVNAAEENESDKSKSEVNDEDDEEGS 140
EKAP+ +A +KSDY K M Y+K+ + S +SKSEV+ +DD + S
Sbjct: 101 AEKAPYEAKAAIKKSDYGKLMTAYSKKQETDDGGADEEDDYKHSHRSKSEVDGQDDSDES 160
>gi|118484946|gb|ABK94338.1| unknown [Populus trichocarpa]
Length = 171
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 79/116 (68%), Gaps = 5/116 (4%)
Query: 26 KRTAKPKAAK-DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
KR AK K K DP+KPKRPPS+FFVF+EEFRK +K+ HPN K+V+ VGKA GEKWKSMS
Sbjct: 41 KRAAKEKITKKDPDKPKRPPSSFFVFLEEFRKIYKQEHPNMKAVSAVGKAGGEKWKSMSA 100
Query: 85 DEKAPFVERAEKRKSDYNKNMQDYNKQ----LADGVNAAEENESDKSKSEVNDEDD 136
EKAP+ +A +KSDY K M Y+K+ + S +SKSEV+ +DD
Sbjct: 101 AEKAPYEAKAAIKKSDYGKLMTAYSKKQETDDGGADEEDDYKHSHRSKSEVDGQDD 156
>gi|4468042|emb|CAB37859.1| unnamed protein product [Vicia faba var. minor]
Length = 74
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 64/74 (86%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPNKPKRPPSAFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA
Sbjct: 1 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 60
Query: 95 EKRKSDYNKNMQDY 108
K+K +Y +Q Y
Sbjct: 61 LKKKEEYEITLQAY 74
>gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus pseudonarcissus]
Length = 106
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 76/106 (71%), Gaps = 6/106 (5%)
Query: 1 MKGGRSKADAVG-TDSKLKSKGARA-----GKRTAKPKAAKDPNKPKRPPSAFFVFMEEF 54
MKGG+SKAD D++L K A K KA KDPNKPKRPPSAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPAKKPVVKKSKAEKDPNKPKRPPSAFFVFMEEF 60
Query: 55 RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
RKQFKE +PNNK V+ VGKAAG+KWKSMS EKAP+ +A KRK++
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAE 106
>gi|346467547|gb|AEO33618.1| hypothetical protein [Amblyomma maculatum]
Length = 146
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 86/120 (71%), Gaps = 7/120 (5%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K KAAKDPNKPKR PSAFFVF++EFRK+FKE +P NKSVA V KA G +WKSMS+ +K P
Sbjct: 32 KTKAAKDPNKPKRAPSAFFVFLDEFRKEFKEKNPENKSVAAVTKAGGARWKSMSDADKEP 91
Query: 90 FVERAEKRKSDYNKNMQDYNKQLADGV--NAAEENESDKSKSEVNDEDDEEGSGEEEDDD 147
+V +A+K K +Y K ++ Y K A NA + ESDKSKSEVN GS EEE++D
Sbjct: 92 YVSKADKLKVEYQKKVKAYEKGQAHEPEDNAEMDEESDKSKSEVNS-----GSEEEEEED 146
>gi|157382900|gb|ABV48885.1| high mobility group protein B3 [Physcomitrella patens]
Length = 158
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 70/97 (72%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPP+AFF+F+ EFR+ FK +PN K V VGKA GEKWKSMSE EK PF+ +A
Sbjct: 49 DPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEAEKQPFMTKAV 108
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
++KS+Y+K + YNK+ + E ESDK KSE+N
Sbjct: 109 QKKSEYDKTISAYNKKQDEDAEEVEAEESDKCKSEIN 145
>gi|388522261|gb|AFK49192.1| unknown [Lotus japonicus]
Length = 173
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%), Gaps = 2/103 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KRPPSAFFVF+E+FRK FK +PN K V+ VGKA GEKWKS+++ EKAP+ +A KRK++
Sbjct: 51 KRPPSAFFVFLEDFRKTFKAENPNVKGVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKAE 110
Query: 101 YNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEE 143
Y K + YN + A + +E ESDKSKSE+NDE+D E SG+E
Sbjct: 111 YEKLINAYNNKQASTADDVDE-ESDKSKSEINDEED-EASGQE 151
>gi|371721822|gb|AEX55234.1| HMG transcription factor [Allium sativum]
Length = 115
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 73/97 (75%), Gaps = 7/97 (7%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKS 99
PKRPPSAFFVFME+FRK FKE +P+NK V+ VGKAAG+KWKS++ EKAP+ +A KRK+
Sbjct: 2 PKRPPSAFFVFMEDFRKIFKEKNPDNKQVSAVGKAAGDKWKSLTAAEKAPYEAKAAKRKA 61
Query: 100 DYNKNMQDYNKQLADGVN-------AAEENESDKSKS 129
+Y K M YNK+L+DG + EE ESDKSKS
Sbjct: 62 EYTKTMAAYNKKLSDGASKKSAPEEEEEEAESDKSKS 98
>gi|255566393|ref|XP_002524182.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223536551|gb|EEF38197.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 155
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 14/122 (11%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKP-----------KAAKDPNKPKRPPSAFFV 49
MKG R +AV K SK +A K +KP +KD + PKRP SAFF+
Sbjct: 1 MKGPR---NAVIAQKKPSSKVLKARKAESKPGKEEASSRKKKNVSKDTDAPKRPASAFFI 57
Query: 50 FMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
FM+EFRK FKE +P+NK+V+ VGKA GEKWKS+SE +KAP++E+A KRK++Y K ++ Y
Sbjct: 58 FMDEFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEAYK 117
Query: 110 KQ 111
+Q
Sbjct: 118 QQ 119
>gi|357136925|ref|XP_003570053.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 144
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
RPPSAFFVFM EFR++++ HPNNKSVA V KAAGEKW+SMS+ +KAP+VE+A ++K DY
Sbjct: 36 RPPSAFFVFMSEFRQEYQAEHPNNKSVANVSKAAGEKWRSMSDADKAPYVEKAGQKKQDY 95
Query: 102 NKNMQDYNKQLADG---VNAAEENESDKSKSEVNDED 135
K ++K+ + ++ SDKSKSEV+DED
Sbjct: 96 EKTKATFDKKESTSSKKTKTQDDEGSDKSKSEVDDED 132
>gi|225448400|ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
vinifera]
Length = 156
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 71/98 (72%), Gaps = 2/98 (2%)
Query: 16 K--LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK 73
K LK+ + + A KDPNKPKRPPSAFFVF+EEFRK +K+ HPN K+V+ VGK
Sbjct: 30 KAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGK 89
Query: 74 AAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
A GEKWKS+SE +KAP+ +A KRKSDY K M YNK+
Sbjct: 90 AGGEKWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNKK 127
>gi|449468356|ref|XP_004151887.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449517965|ref|XP_004166014.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
Length = 142
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 70/107 (65%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KD N PKRP + FFVFMEEFRK +KE P+ K+ VGK GEKWKSMS+ EKAP+ E+A
Sbjct: 34 KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKA 93
Query: 95 EKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSG 141
KRK++Y ++ Y L N ES KS SEVND+ ++E S
Sbjct: 94 LKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDDTEQEASS 140
>gi|302754440|ref|XP_002960644.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
gi|300171583|gb|EFJ38183.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
Length = 134
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 79/102 (77%), Gaps = 3/102 (2%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN+PK+P +AFF+F+EEFR+ +K+ HP+ K VA +GKA G+ WKS+S+ EK P+ +A
Sbjct: 32 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSDKEKEPYHAKAA 91
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDE 137
KRK+DY+K+++ YNK+ DG +A E+E KSKS ND+D+E
Sbjct: 92 KRKADYDKDLEAYNKKKEDG--SAGESEV-KSKSAGNDDDEE 130
>gi|255571919|ref|XP_002526902.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223533801|gb|EEF35533.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 190
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N+PKRPPSAFFVF+E+FRK +K+ HPN K+V+ VGKA GEKWKSMS EK+PF +A KR
Sbjct: 54 NRPKRPPSAFFVFLEDFRKVYKQEHPNVKAVSAVGKAGGEKWKSMSNAEKSPFEAKAAKR 113
Query: 98 KSDYNKNMQDYNKQ 111
KSDY K M YNK+
Sbjct: 114 KSDYEKLMTAYNKK 127
>gi|357506009|ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula]
gi|355498308|gb|AES79511.1| HMG1/2-like protein [Medicago truncatula]
gi|388511215|gb|AFK43669.1| unknown [Medicago truncatula]
Length = 170
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 75/104 (72%), Gaps = 2/104 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPKRPPSAFFVF+E+FRK FK +PN K+V+ VGKA GEKWKS+++ EKAP+ +A
Sbjct: 47 DPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAA 106
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEG 139
KRK +Y K M YN + +E ESDK SEVN+ED+ G
Sbjct: 107 KRKVEYEKLMNAYNNK--PSSADDDEEESDKDNSEVNNEDEASG 148
>gi|339716048|gb|AEJ88271.1| putative HMG DNA-binding protein [Wolffia arrhiza]
Length = 148
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 1 MKGG-RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK 59
MKGG +SK++ DS+L K + K AKDPNKPKR PSAFFVF+EEFRK++K
Sbjct: 1 MKGGAKSKSEPTKADSRLSVKKKAPARAAKTAKKAKDPNKPKRAPSAFFVFLEEFRKEYK 60
Query: 60 EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
E HP+NKSVA VGKAAG KW+SMS+ +KAP+V ++ KRK++ K K+ AA
Sbjct: 61 EKHPDNKSVAAVGKAAGAKWRSMSDSDKAPYVNKSNKRKAEVQKTAAVNAKKQETSSRAA 120
Query: 120 EENESDKSKSEVN 132
+++SDKSKSEVN
Sbjct: 121 ADDDSDKSKSEVN 133
>gi|302796105|ref|XP_002979815.1| hypothetical protein SELMODRAFT_18312 [Selaginella moellendorffii]
gi|302807533|ref|XP_002985461.1| hypothetical protein SELMODRAFT_18313 [Selaginella moellendorffii]
gi|300146924|gb|EFJ13591.1| hypothetical protein SELMODRAFT_18313 [Selaginella moellendorffii]
gi|300152575|gb|EFJ19217.1| hypothetical protein SELMODRAFT_18312 [Selaginella moellendorffii]
Length = 84
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 63/80 (78%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA+KDPN PKRPP+AFFVF+E FR+Q+KE HP+ K VA VGKAAG+KW MSE EKA +V
Sbjct: 5 KASKDPNLPKRPPTAFFVFLESFRQQYKEDHPDVKGVAAVGKAAGDKWSKMSESEKAVYV 64
Query: 92 ERAEKRKSDYNKNMQDYNKQ 111
+A + ++DY ++M Y K+
Sbjct: 65 NKAAQLRADYAESMAAYKKK 84
>gi|388497798|gb|AFK36965.1| unknown [Medicago truncatula]
Length = 170
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPKRPPSAFFVF+E+FRK FK +PN K+V+ VGKA G KWKS+++ EKAP+ +A
Sbjct: 47 DPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGGKWKSLTKAEKAPYEAKAV 106
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEG 139
KRK +Y K M YN + +E ESDK SEVN+ED+ G
Sbjct: 107 KRKVEYEKLMDAYNNK--PSSADDDEEESDKDNSEVNNEDEASG 148
>gi|359484115|ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
gi|147815109|emb|CAN61363.1| hypothetical protein VITISV_034306 [Vitis vinifera]
gi|297742725|emb|CBI35359.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 70/84 (83%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K++ + + KDPN PKRPP+AFF+FM++FRK++KE++P++K+V+ V K GEKWKSM+++
Sbjct: 85 KKSRRLRKVKDPNMPKRPPTAFFLFMDDFRKEYKESNPDSKNVSVVAKEGGEKWKSMTDE 144
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
EK P+V++A + K++Y+K M+ YN
Sbjct: 145 EKKPYVDKAAELKAEYDKAMETYN 168
>gi|302803281|ref|XP_002983394.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
gi|300149079|gb|EFJ15736.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
Length = 123
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 75/102 (73%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN+PK+P +AFF+F+EEFR+ +K+ HP+ K VA +GKA G+ WKS+S+ EK P+ +A
Sbjct: 18 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSDKEKEPYHAKAA 77
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDE 137
KRK+DY+K+++ YNK+ + + + KSKS ND+D+E
Sbjct: 78 KRKADYDKDLEAYNKKKEEEEDGSAGESEVKSKSAGNDDDEE 119
>gi|168028752|ref|XP_001766891.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681870|gb|EDQ68293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 73/99 (73%), Gaps = 2/99 (2%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRP +AFF+F+ EFR+ FK+ +PN K VA VGKA GEKWKSMSE EK P++++A
Sbjct: 53 DPNAPKRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEAEKQPYMQKAV 112
Query: 96 KRKSDYNKNMQDYNKQ--LADGVNAAEENESDKSKSEVN 132
++KS+Y+K + YNK+ + E ESDKSKSE+N
Sbjct: 113 QKKSEYDKTLSAYNKKQDDDEEDEEVEAEESDKSKSEIN 151
>gi|297798364|ref|XP_002867066.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312902|gb|EFH43325.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 125
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 93/130 (71%), Gaps = 6/130 (4%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
MK +++ ++ TD +LK +G + GK+T P K+PPS FFVF+++FR++F
Sbjct: 1 MKDNQTEVESRSTDDRLKVRGNKGGKKTKDPNKP------KKPPSPFFVFLDDFRREFNL 54
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
A+P+NKSVA+VGKAAG+KWKSM+E++KAPFV +A+ +K++Y MQ YN +LA+G A
Sbjct: 55 ANPDNKSVASVGKAAGKKWKSMTEEDKAPFVAKAKSKKTEYAATMQQYNMELANGTKTAG 114
Query: 121 ENESDKSKSE 130
++E + K++
Sbjct: 115 DDEKQEEKAD 124
>gi|194700664|gb|ACF84416.1| unknown [Zea mays]
gi|194701704|gb|ACF84936.1| unknown [Zea mays]
gi|413923412|gb|AFW63344.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
gi|413923413|gb|AFW63345.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 139
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
KPKRPPSAFFVFM EFR++++ HP NKSVA V KAAGEKW+SMSE EK P+V++A ++K
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKK 92
Query: 99 SDYNKNMQDYNKQLADGVNAAEENESDKSKSEV 131
DY K + K+ + A+ ++ D SKSEV
Sbjct: 93 QDYEKTKANIEKE-STSSKKAKTDDDDGSKSEV 124
>gi|157382898|gb|ABV48884.1| high mobility group protein B2 [Physcomitrella patens]
Length = 165
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 73/99 (73%), Gaps = 2/99 (2%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRP +AFF+F+ EFR+ FK+ +PN K VA VGKA GEKWKSMSE EK P++++A
Sbjct: 53 DPNAPKRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEAEKQPYMQKAV 112
Query: 96 KRKSDYNKNMQDYNKQ--LADGVNAAEENESDKSKSEVN 132
++KS+Y+K + YNK+ + E ESDKSKSE+N
Sbjct: 113 QKKSEYDKTLSAYNKKQDDDEEDEEVEAEESDKSKSEIN 151
>gi|162460809|ref|NP_001105483.1| high mobility group protein3 [Zea mays]
gi|1845197|emb|CAA69606.1| HMGc2 [Zea mays]
gi|223947405|gb|ACN27786.1| unknown [Zea mays]
gi|413923414|gb|AFW63346.1| HMGc2 protein [Zea mays]
Length = 138
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 67/93 (72%), Gaps = 2/93 (2%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
KPKRPPSAFFVFM EFR++++ HP NKSVA V KAAGEKW+SMSE EK P+V++A ++K
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKK 92
Query: 99 SDYNKNMQDYNKQLADGVNAAEENESDKSKSEV 131
DY K + K + A+ ++ D SKSEV
Sbjct: 93 QDYEKTKANIEKSTSS--KKAKTDDDDGSKSEV 123
>gi|388511193|gb|AFK43658.1| unknown [Lotus japonicus]
Length = 92
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 63/82 (76%)
Query: 51 MEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
M EFR QFK+ +PNNKSVA VGKAAG KWKSM++ EKAP+V RAEK K +Y K ++ YN
Sbjct: 1 MSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAPYVARAEKAKEEYEKTLRAYNN 60
Query: 111 QLADGVNAAEENESDKSKSEVN 132
LA+ +AEE SDKSKSEVN
Sbjct: 61 GLAESKGSAEEEGSDKSKSEVN 82
>gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major]
Length = 212
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
RPPSAFFVF+EEFR+ FK+ +PN K+V+ VGKA GEKWKS+++ EKAP+ +A KRKS+Y
Sbjct: 101 RPPSAFFVFLEEFRQTFKKENPNIKAVSAVGKAGGEKWKSLTDAEKAPYEAKAAKRKSEY 160
Query: 102 NKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
K M YNK+ + A+E S+KS+SEV+
Sbjct: 161 EKLMNAYNKKQESSADEADEG-SEKSRSEVH 190
>gi|388499756|gb|AFK37944.1| unknown [Lotus japonicus]
Length = 197
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 65/83 (78%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
+T K K +DPN+PKRPP+AFFVF+++FRK+FKEA+P +K V VGK GEKW++M+++E
Sbjct: 89 KTEKAKKVEDPNQPKRPPTAFFVFLDDFRKEFKEANPGSKDVKRVGKEGGEKWRAMTDEE 148
Query: 87 KAPFVERAEKRKSDYNKNMQDYN 109
K P++E+ + K +Y K M +YN
Sbjct: 149 KKPYLEKVAELKEEYEKAMANYN 171
>gi|413935044|gb|AFW69595.1| high mobility group protein1 [Zea mays]
Length = 97
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 66/87 (75%), Gaps = 3/87 (3%)
Query: 1 MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQF 58
MKG +SK A D+KL KSKGA + K KA KDPNKPKR PSAFFVFMEEFRK+F
Sbjct: 1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 59
Query: 59 KEAHPNNKSVATVGKAAGEKWKSMSED 85
KE +P NKSVA VGKAAG++WKS+SE
Sbjct: 60 KEKNPKNKSVAAVGKAAGDRWKSLSES 86
>gi|357508231|ref|XP_003624404.1| High mobility group protein [Medicago truncatula]
gi|355499419|gb|AES80622.1| High mobility group protein [Medicago truncatula]
Length = 144
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 6/112 (5%)
Query: 28 TAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEK 87
A+ KA DP+KPKRP S FF+FM +FR +F++ +P+NK V+ VGKAAGEKW+SMS D+K
Sbjct: 1 MARKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMS-DDK 59
Query: 88 APFVERAEKRKSDYNKNMQDYNKQLADGVN-----AAEENESDKSKSEVNDE 134
AP+V AEK+K +Y K + YNK++ N A +++ S KS + N E
Sbjct: 60 APYVADAEKKKMEYVKAIHAYNKKVLMACNNTNLVAGKKSSSGKSFVKSNSE 111
>gi|302790391|ref|XP_002976963.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
gi|300155441|gb|EFJ22073.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
Length = 156
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 61/78 (78%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
A DPN+PKRP +AFFVF+EE+RK FK+ HPN K VA VGKA G+ WK ++E+EK P+ ++
Sbjct: 49 AADPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKPYHDK 108
Query: 94 AEKRKSDYNKNMQDYNKQ 111
A ++K+DY K + +Y K+
Sbjct: 109 AAQKKADYEKTLTEYKKK 126
>gi|302797885|ref|XP_002980703.1| hypothetical protein SELMODRAFT_38818 [Selaginella moellendorffii]
gi|300151709|gb|EFJ18354.1| hypothetical protein SELMODRAFT_38818 [Selaginella moellendorffii]
Length = 83
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 63/82 (76%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K K A DPN+PKRP +AFFVF+EE+RK FK+ HPN K VA VGKA G+ WK ++E+EK P
Sbjct: 1 KKKNAADPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKP 60
Query: 90 FVERAEKRKSDYNKNMQDYNKQ 111
+ ++A ++K+DY K + +Y K+
Sbjct: 61 YHDKAAQKKADYEKTLTEYKKK 82
>gi|168050181|ref|XP_001777538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671023|gb|EDQ57581.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 314
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 54/76 (71%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVE 92
AAKD + PKRPPSA+F+FME FRK+FK A+P+ K V KA GEKW SMSE+EKAP+V
Sbjct: 186 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVA 245
Query: 93 RAEKRKSDYNKNMQDY 108
A RK Y + M Y
Sbjct: 246 EASVRKGQYEQAMTAY 261
>gi|157382896|gb|ABV48883.1| high mobility group protein B1 [Physcomitrella patens]
Length = 215
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 54/76 (71%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVE 92
AAKD + PKRPPSA+F+FME FRK+FK A+P+ K V KA GEKW SMSE+EKAP+V
Sbjct: 130 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVA 189
Query: 93 RAEKRKSDYNKNMQDY 108
A RK Y + M Y
Sbjct: 190 EASVRKGQYEQAMTAY 205
>gi|351722065|ref|NP_001236719.1| uncharacterized protein LOC100306558 [Glycine max]
gi|255628875|gb|ACU14782.1| unknown [Glycine max]
Length = 209
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 59/73 (80%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPP+AFFVF+++FRK FKEA+P++K V VGK AGEKW+SM+++EK P++++
Sbjct: 99 DPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVA 158
Query: 96 KRKSDYNKNMQDY 108
+ K +Y K M+ Y
Sbjct: 159 ELKEEYEKAMESY 171
>gi|116785888|gb|ABK23898.1| unknown [Picea sitchensis]
Length = 220
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 84/125 (67%), Gaps = 6/125 (4%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K A+DPN+PK+P +AFFVFM++FRK +KE +P+ K A VGK G KWK+MS++
Sbjct: 94 KKRTREKKARDPNQPKKPATAFFVFMDDFRKTYKETNPDVKGAAQVGKEGGLKWKAMSDE 153
Query: 86 EKAPFVERAEKRKSDYNKNMQDYNKQLAD-GVNAAEENESDKSKS----EVNDED-DEEG 139
+K P++E+A + K++Y K M Y + L D +++ E + +KS +VNDE+ + G
Sbjct: 154 DKKPYLEKAAELKAEYEKAMSKYQQDLKDEAAKSSDGGEDEVAKSDADGDVNDEEANSNG 213
Query: 140 SGEEE 144
GE E
Sbjct: 214 DGEAE 218
>gi|356536465|ref|XP_003536758.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 200
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 59/73 (80%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPP+AFF F+++FRK FKEA+P++K V VGK AGEKW+SM+++EK P++++
Sbjct: 99 DPNMPKRPPTAFFAFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVA 158
Query: 96 KRKSDYNKNMQDY 108
+ K++Y K M+ Y
Sbjct: 159 ELKAEYEKAMESY 171
>gi|293333310|ref|NP_001168929.1| uncharacterized protein LOC100382741 [Zea mays]
gi|223973791|gb|ACN31083.1| unknown [Zea mays]
Length = 204
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 52/60 (86%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
KPKRPPSAFFVFM EFR++++ HP NKSVATV KAAGEKW++MS+ EK P+V++A ++K
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKK 91
>gi|357484153|ref|XP_003612363.1| HMG1/2-like protein [Medicago truncatula]
gi|355513698|gb|AES95321.1| HMG1/2-like protein [Medicago truncatula]
Length = 94
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 8 ADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS 67
+DA D++LK KGA G T + K AKDPNKPKRPPSAFFVFM EFR++FK+ +P+NKS
Sbjct: 6 SDAKPADNRLKRKGAGTG--TKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNKS 63
Query: 68 VATVGKAAGEKWKSMSE 84
VA VGKA G++WK++S+
Sbjct: 64 VAVVGKAGGKEWKALSD 80
>gi|449464956|ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
gi|449531370|ref|XP_004172659.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
Length = 207
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 59/75 (78%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPP+AFF+FM++FRK +KEA+P++K V V K GEKWKSM+++EK P+ ++A
Sbjct: 106 KDPNAPKRPPTAFFIFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKA 165
Query: 95 EKRKSDYNKNMQDYN 109
+ K++Y K ++ N
Sbjct: 166 AELKAEYEKALESRN 180
>gi|346472777|gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 58/70 (82%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
NKPKR P+AFF+FM++FRK++KE HP+NKSVA+V K GE+W+SM+ +EK P+ +RA +
Sbjct: 102 NKPKRAPTAFFLFMDDFRKEYKELHPDNKSVASVAKEGGERWRSMTIEEKKPYTDRAAEL 161
Query: 98 KSDYNKNMQD 107
K++Y K +++
Sbjct: 162 KAEYVKEIEE 171
>gi|359486418|ref|XP_003633441.1| PREDICTED: high mobility group B protein 1 [Vitis vinifera]
Length = 151
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 73/127 (57%), Gaps = 36/127 (28%)
Query: 23 RAGKRTAKPKAAK--------------DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV 68
R GKR A KA K DPNKPKRPPSAFFVF+EEFRK +K+ HPN K+V
Sbjct: 25 RLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
Query: 69 ATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ---LADGVNAAEENESD 125
+ +KAP+ +A KRKSDY K M YNK+ +AD +E ESD
Sbjct: 85 SA---------------DKAPYEAKAAKRKSDYEKLMAAYNKKQESMADD----DEEESD 125
Query: 126 KSKSEVN 132
+SKSEVN
Sbjct: 126 RSKSEVN 132
>gi|388495062|gb|AFK35597.1| unknown [Lotus japonicus]
Length = 162
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 73/105 (69%), Gaps = 7/105 (6%)
Query: 20 KGARAGKRTAKPKAAK-------DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVG 72
+ A+ K T KPKA + D NKPK+PP+AFF F+E+FRK+F+ +P+ K++ +G
Sbjct: 43 RSAQQTKSTKKPKAKQKTSKQRIDANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIG 102
Query: 73 KAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVN 117
K+ GEKWK+M+ +EK + + A ++++++++ M +YNK++ ++
Sbjct: 103 KSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYNKKMVSNLS 147
>gi|413938186|gb|AFW72737.1| hypothetical protein ZEAMMB73_544458 [Zea mays]
Length = 96
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 70/97 (72%), Gaps = 3/97 (3%)
Query: 51 MEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
M EFR++++ HP NKSVATV KAAGEKW++MS+ EK P+V++A ++K DY K +++K
Sbjct: 1 MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDK 60
Query: 111 QLADGVNAAEENESDKSKSEVNDEDDEEGSGEEEDDD 147
+ + A+ + D SKSEV+DED GS +EE+DD
Sbjct: 61 KESTSSKKAKTEDEDGSKSEVDDED---GSSDEENDD 94
>gi|326525246|dbj|BAK07893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 215
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 66/104 (63%), Gaps = 16/104 (15%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
K KRPP+AFF+FM++FR +FK +HP+ K VA VGKAAGEKW+SM+E+EK P
Sbjct: 100 KAKRPPTAFFLFMKDFRVEFKTSHPDEKGVAAVGKAAGEKWRSMTEEEKKP--------- 150
Query: 99 SDYNKNMQDYNKQLADGVNAAEENESDKSKS-----EVNDEDDE 137
YN ++ QL +G +AE N D+ K+ EV+D D E
Sbjct: 151 --YNDQAKELKAQLDNGEGSAENNVGDEEKADADAEEVDDADLE 192
>gi|449433698|ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
gi|449505924|ref|XP_004162605.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
Length = 161
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 69/90 (76%), Gaps = 2/90 (2%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
D NKPK+PP+AFF F+++FRK+F+E +P+ K++ VGKA GEKWK+M+ +EK + + A
Sbjct: 69 DVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIAT 128
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESD 125
+++++++K M +Y K++ G++ +E+E D
Sbjct: 129 EKRAEFDKAMTEYKKRMESGID--QESEED 156
>gi|297736623|emb|CBI25494.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 52/76 (68%), Gaps = 14/76 (18%)
Query: 23 RAGKRTAKPKAAK--------------DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV 68
R GKR A KA K DPNKPKRPPSAFFVF+EEFRK +K+ HPN K+V
Sbjct: 49 RLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 108
Query: 69 ATVGKAAGEKWKSMSE 84
+ VGKA GEKWKS+SE
Sbjct: 109 SAVGKAGGEKWKSLSE 124
>gi|225463454|ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 [Vitis vinifera]
gi|297740668|emb|CBI30850.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 66/95 (69%)
Query: 21 GARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWK 80
G +A +T K D KPK+PP+AFF F+E+FRK+F+E +P+ KS+ +GKA GEKWK
Sbjct: 69 GNKAKAKTKKRSQRVDSKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWK 128
Query: 81 SMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+M+ +EK + + A ++++++++ M DY K+ G
Sbjct: 129 TMTYEEKVQYYDIATEKRAEFDRAMADYIKRQESG 163
>gi|449521910|ref|XP_004167972.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 112
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 46/53 (86%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
KA KDPNKPKRPPSAFFVF+EEFRK++K +PN K+V+ VGKA GEKWKS+S
Sbjct: 47 KAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSH 99
>gi|356524949|ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 148
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 61/80 (76%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
D KPK+PP+AFF F+E+FRK+F+E +P+ KS+ +GKA GEKWK+M+ +EK + + A
Sbjct: 56 DAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIAT 115
Query: 96 KRKSDYNKNMQDYNKQLADG 115
K++ +++ M ++NK++ +G
Sbjct: 116 KKREEFDNAMAEFNKKMENG 135
>gi|357517687|ref|XP_003629132.1| HMG1/2-like protein [Medicago truncatula]
gi|355523154|gb|AET03608.1| HMG1/2-like protein [Medicago truncatula]
Length = 75
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 55/67 (82%), Gaps = 1/67 (1%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+ KAD+ D++LK KGA AG++ K KAAKDPNKPKRPPSAFFVFM +FR+Q+K+ HPN
Sbjct: 3 KVKADSKPADNRLKRKGAGAGRKQTK-KAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPN 61
Query: 65 NKSVATV 71
NKSVA +
Sbjct: 62 NKSVAAL 68
>gi|195618458|gb|ACG31059.1| HMG1/2-like protein [Zea mays]
gi|195640852|gb|ACG39894.1| HMG1/2-like protein [Zea mays]
gi|223975443|gb|ACN31909.1| unknown [Zea mays]
gi|413925109|gb|AFW65041.1| HMG type nucleosome/chromatin assembly factor DNucleasome/chromatin
assembly factor D protein NFD106 [Zea mays]
Length = 212
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 52/62 (83%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
K KR P+AFF+FM++FRK+FK HP+NKSVATV K GE+WKSM+++EK P++E+A + K
Sbjct: 91 KRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKSMTDEEKKPYIEKAAELK 150
Query: 99 SD 100
++
Sbjct: 151 AE 152
>gi|162462896|ref|NP_001105076.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|17017396|gb|AAL33652.1|AF440223_1 HMG type nucleosome/chromatin assembly factor D [Zea mays]
gi|22135475|gb|AAM93218.1|AF527617_1 nucleasome/chromatin assembly factor D protein NFD106 [Zea mays]
Length = 154
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 52/62 (83%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
K KR P+AFF+FM++FRK+FK HP+NKSVATV K GE+WKSM+++EK P++E+A + K
Sbjct: 33 KRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKSMTDEEKKPYIEKAAELK 92
Query: 99 SD 100
++
Sbjct: 93 AE 94
>gi|388501678|gb|AFK38905.1| unknown [Medicago truncatula]
Length = 152
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 61/80 (76%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
D KPK+PP+AFF F+E+FRK+FK+ +P+ KS+ +GKA GEKWK+M+ +EK + + A
Sbjct: 60 DAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIGKACGEKWKTMTFEEKVQYYDIAT 119
Query: 96 KRKSDYNKNMQDYNKQLADG 115
++++++++ +YNK++ G
Sbjct: 120 EKRAEFDRATTEYNKKMESG 139
>gi|351724833|ref|NP_001237839.1| uncharacterized protein LOC100305607 [Glycine max]
gi|255626057|gb|ACU13373.1| unknown [Glycine max]
Length = 150
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 61/80 (76%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
D KP++PP+AFF F+E+FRK+F+E +P+ +S+ +GKA GEKWK+M+ +EK + + A
Sbjct: 58 DAMKPRKPPTAFFYFLEDFRKEFQEQNPDVRSMRDIGKACGEKWKTMTYEEKVQYYDIAT 117
Query: 96 KRKSDYNKNMQDYNKQLADG 115
K++ +++ M ++NK++ +G
Sbjct: 118 KKREEFDSAMAEFNKKMENG 137
>gi|242080163|ref|XP_002444850.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
gi|241941200|gb|EES14345.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
Length = 221
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 76/118 (64%), Gaps = 10/118 (8%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
K KR P+AFF+FM++FRK+FK AHP+NKSVATV K GEKWKSM+++EK P+VE+A + K
Sbjct: 96 KRKRSPTAFFLFMDDFRKEFKAAHPDNKSVATVAKEGGEKWKSMTDEEKKPYVEKAAELK 155
Query: 99 S---------DYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEEEDDD 147
+ + N + DG ++ + + + DED+++ +G++ED+D
Sbjct: 156 AQAENGEGSGENNVAKKKAKADDKDGEQEVDQPAKKRIRRKALDEDEDD-AGDQEDED 212
>gi|125559825|gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
gi|125559834|gb|EAZ05282.1| hypothetical protein OsI_27485 [Oryza sativa Indica Group]
Length = 204
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 53/64 (82%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
K KRPP+AFF+FM +FRK++K HP+NKSV+ V K GE+WKSMS+++K P++++A + K
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150
Query: 99 SDYN 102
++Y+
Sbjct: 151 AEYH 154
>gi|224097317|ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
gi|118483462|gb|ABK93630.1| unknown [Populus trichocarpa]
gi|222853809|gb|EEE91356.1| high mobility group family [Populus trichocarpa]
Length = 201
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 59/75 (78%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+DPN PKRPP+AFF+FM++FRK++KEA+P++K V V K G +WKSM+++EK +V++A
Sbjct: 100 RDPNAPKRPPTAFFLFMDDFRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKA 159
Query: 95 EKRKSDYNKNMQDYN 109
+ K++ +K ++ N
Sbjct: 160 AELKAENDKALESDN 174
>gi|115474323|ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|38637289|dbj|BAD03552.1| putative HMG type nucleosome/chromatin assembly factor D [Oryza
sativa Japonica Group]
gi|113622727|dbj|BAF22672.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|125601889|gb|EAZ41214.1| hypothetical protein OsJ_25719 [Oryza sativa Japonica Group]
gi|213959174|gb|ACJ54921.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215697671|dbj|BAG91665.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 53/64 (82%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
K KRPP+AFF+FM +FRK++K HP+NKSV+ V K GE+WKSMS+++K P++++A + K
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150
Query: 99 SDYN 102
++Y+
Sbjct: 151 AEYH 154
>gi|357165293|ref|XP_003580334.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 135
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 16/146 (10%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
RSK+D D+ K+ G R KA KPKR P+ FF F+ EFR Q+ E HP
Sbjct: 2 RSKSDG---DASFKASGKRK-------KATGGVAKPKRAPTPFFAFLAEFRPQYMEKHPE 51
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFV---ERAEKRKSDYNKNMQDYNKQLADGVNAAEE 121
K VA V KAAGEKW+SMS++EKA + + ++ K+ K K DG EE
Sbjct: 52 AKGVAAVTKAAGEKWRSMSDEEKAKYGGKKQEVQENKAAKKKESTSSKKAKTDGDE--EE 109
Query: 122 NE-SDKSKSEVNDEDDEEGSGEEEDD 146
E SDKSKS+V D+ +E+G+ EE++D
Sbjct: 110 GEGSDKSKSDVEDDGEEDGANEEDED 135
>gi|359481661|ref|XP_002279947.2| PREDICTED: high mobility group B protein 1-like [Vitis vinifera]
gi|147815135|emb|CAN74566.1| hypothetical protein VITISV_023651 [Vitis vinifera]
gi|297740214|emb|CBI30396.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KRPPSAFFVF+EEFRK FK+ +PN K+V+ VGKA GE+WKS+SE EKAP+ +A K+K++
Sbjct: 57 KRPPSAFFVFLEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEAEKAPYEAKAAKKKAE 116
Query: 101 YNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
Y K M YNK+ + +E ESD+SKSEVN
Sbjct: 117 YEKIMNAYNKKQESTADDGDE-ESDRSKSEVN 147
>gi|18403553|ref|NP_565788.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|75219838|sp|O64702.2|HMG14_ARATH RecName: Full=High mobility group B protein 14; AltName:
Full=Nucleosome/chromatin assembly factor group D 14
gi|20197083|gb|AAC26692.2| putative HMG protein [Arabidopsis thaliana]
gi|20197160|gb|AAM14948.1| putative HMG protein [Arabidopsis thaliana]
gi|21536857|gb|AAM61189.1| putative HMG protein [Arabidopsis thaliana]
gi|26452914|dbj|BAC43535.1| putative HMG protein [Arabidopsis thaliana]
gi|28973511|gb|AAO64080.1| putative HMG protein [Arabidopsis thaliana]
gi|330253881|gb|AEC08975.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 151
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 62/88 (70%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKS 99
PK+P +AFF F+++FRKQ++E +P+ KS+ +GK GEKWK+M+ +EK + + A +++
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
Query: 100 DYNKNMQDYNKQLADGVNAAEENESDKS 127
++++ M +Y K++ G + E +SD S
Sbjct: 123 EFHRAMTEYTKRMESGAHDESETDSDYS 150
>gi|226503761|ref|NP_001151622.1| HMG1/2-like protein [Zea mays]
gi|195648164|gb|ACG43550.1| HMG1/2-like protein [Zea mays]
gi|414881086|tpg|DAA58217.1| TPA: HMG1/2-like protein [Zea mays]
Length = 115
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Query: 24 AGKRTAKPKAAK--DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKS 81
+ KR +PK A DP PK+PP+AFF FME+FRK +K+ P+ KS+ +GKA GEKW +
Sbjct: 23 STKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKWNT 82
Query: 82 MSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
M+ +EK + + A ++++++ K M +YNK+
Sbjct: 83 MTFEEKVKYYDIATEKRAEFEKAMIEYNKK 112
>gi|255557355|ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223541125|gb|EEF42681.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 198
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 26 KRTAKPKAAK-DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
KR +K + AK D KPK+PP+AFF F+E+FRK F++ +P+ KS+ +GKA GEKWK M+
Sbjct: 95 KRISKRQIAKLDSKKPKKPPTAFFYFLEDFRKDFQKQNPDVKSMREIGKACGEKWKMMTY 154
Query: 85 DEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+EK + + A +++++++K M +Y K+ G
Sbjct: 155 EEKVKYYDIATEKRAEFDKAMAEYIKKKESG 185
>gi|357144307|ref|XP_003573245.1| PREDICTED: high mobility group B protein 7-like [Brachypodium
distachyon]
Length = 218
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 54/65 (83%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N KRPP+AFF+FM++FR +FK +HP+ K V+ VGKAAG KWK+M+++EK P++++A++
Sbjct: 99 NGKKRPPTAFFIFMKDFRLEFKASHPDEKGVSAVGKAAGVKWKAMTDEEKKPYLDQAKEL 158
Query: 98 KSDYN 102
K+ ++
Sbjct: 159 KAKFD 163
>gi|357135842|ref|XP_003569517.1| PREDICTED: high mobility group B protein 14-like [Brachypodium
distachyon]
Length = 127
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 56/80 (70%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP +PK+PP+AFF FME+FR +FK +P+ KS+ +G+A GEKW M+ +EK + + A
Sbjct: 39 DPRRPKKPPTAFFYFMEDFRDKFKAENPSVKSMQDIGRACGEKWNKMAFEEKVKYYDLAT 98
Query: 96 KRKSDYNKNMQDYNKQLADG 115
+R++++ K M YNK+ G
Sbjct: 99 ERRAEFEKAMAQYNKKKISG 118
>gi|242053921|ref|XP_002456106.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
gi|241928081|gb|EES01226.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
Length = 109
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
Query: 26 KRTAKPKAAK--DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMS 83
KR ++PK A D PK+PP+AFF FME+FRK +K+ P+ KS+ +GKA GEKW +M+
Sbjct: 9 KRKSRPKPAGKGDRRAPKKPPTAFFYFMEDFRKVYKQEKPSVKSMQEIGKACGEKWNTMA 68
Query: 84 EDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESD 125
+EK + + A ++++++ K M +YNK+ +G +EE++ D
Sbjct: 69 FEEKVKYYDIATEKRAEFEKAMIEYNKKKKNG-EMSEESDYD 109
>gi|297826905|ref|XP_002881335.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297327174|gb|EFH57594.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNKSVA-TVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
PK+PP+AFF F+E+FRKQ++E +P KS+ +GK GEKWK+M+ +EK + + A +++
Sbjct: 64 PKKPPTAFFFFLEDFRKQYQEENPEVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKR 123
Query: 99 SDYNKNMQDYNKQLADGVNAAEENESD 125
++++ M +Y K++ G +E+E+D
Sbjct: 124 EEFHRAMTEYTKRMESG--GYDESETD 148
>gi|79324303|ref|NP_001031480.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|330253882|gb|AEC08976.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNKSVA-TVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
PK+P +AFF F+++FRKQ++E +P+ KS+ +GK GEKWK+M+ +EK + + A +++
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKR 122
Query: 99 SDYNKNMQDYNKQLADGVNAAEENESDKS 127
++++ M +Y K++ G + E +SD S
Sbjct: 123 EEFHRAMTEYTKRMESGAHDESETDSDYS 151
>gi|427794389|gb|JAA62646.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 604
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K A+D NKPKRP +AF +FM +FRK+ P VA + K GE+W+SMSE++K P+V
Sbjct: 250 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 308
Query: 92 ERAEKRKSDYNKNMQDYNK 110
ER + K Y +NM++Y +
Sbjct: 309 ERQNEEKMKYEQNMEEYRR 327
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 30 KPKAAKD-PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKA 88
KPK KD PKR +A+ F + +R++ K++ + GK KW +MS+++K
Sbjct: 170 KPKVNKDGVPAPKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQ 229
Query: 89 PFVERAEKRKSDYNKNMQDY 108
PF+ A + + Y + M Y
Sbjct: 230 PFLSAAARDRERYKREMAVY 249
>gi|427793707|gb|JAA62305.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 529
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K A+D NKPKRP +AF +FM +FRK+ P VA + K GE+W+SMSE++K P+V
Sbjct: 271 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 329
Query: 92 ERAEKRKSDYNKNMQDYNK 110
ER + K Y +NM++Y +
Sbjct: 330 ERQNEEKMKYEQNMEEYRR 348
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 30 KPKAAKD-PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKA 88
KPK KD PKR +A+ F + +R++ K++ + GK KW +MS+++K
Sbjct: 191 KPKVNKDGVPAPKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQ 250
Query: 89 PFVERAEKRKSDYNKNMQDY 108
PF+ A + + Y + M Y
Sbjct: 251 PFLSAAARDRERYKREMAVY 270
>gi|427793709|gb|JAA62306.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 640
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K A+D NKPKRP +AF +FM +FRK+ P VA + K GE+W+SMSE++K P+V
Sbjct: 286 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 344
Query: 92 ERAEKRKSDYNKNMQDYNK 110
ER + K Y +NM++Y +
Sbjct: 345 ERQNEEKMKYEQNMEEYRR 363
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 30 KPKAAKD-PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKA 88
KPK KD PKR +A+ F + +R++ K++ + GK KW +MS+++K
Sbjct: 206 KPKVNKDGVPAPKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQ 265
Query: 89 PFVERAEKRKSDYNKNMQDY 108
PF+ A + + Y + M Y
Sbjct: 266 PFLSAAARDRERYKREMAVY 285
>gi|427780835|gb|JAA55869.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 508
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K A+D NKPKRP +AF +FM +FRK+ P VA + K GE+W+SMSE++K P+V
Sbjct: 250 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYV 308
Query: 92 ERAEKRKSDYNKNMQDYNK 110
ER + K Y +NM++Y +
Sbjct: 309 ERQNEEKMKYEQNMEEYRR 327
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 30 KPKAAKD-PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKA 88
KPK KD PKR +A+ F + +R++ K++ + GK KW +MS+++K
Sbjct: 170 KPKVNKDGVPAPKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQ 229
Query: 89 PFVERAEKRKSDYNKNMQDY 108
PF+ A + + Y + M Y
Sbjct: 230 PFLSAAARDRERYKREMAVY 249
>gi|297597325|ref|NP_001043799.2| Os01g0666200 [Oryza sativa Japonica Group]
gi|56202161|dbj|BAD73639.1| HMG protein-like [Oryza sativa Japonica Group]
gi|125527174|gb|EAY75288.1| hypothetical protein OsI_03176 [Oryza sativa Indica Group]
gi|215693961|dbj|BAG89148.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673529|dbj|BAF05713.2| Os01g0666200 [Oryza sativa Japonica Group]
Length = 133
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
D +PK+PP+AFF FME+FRK +KE +P+ KS+ VGKA GEKW +M+ +E+ + + A
Sbjct: 45 DRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIAT 104
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESD 125
+++++Y K + +++K+ G +EE++ D
Sbjct: 105 EKRAEYEKAVAEFDKKKESG-ELSEESDYD 133
>gi|125527178|gb|EAY75292.1| hypothetical protein OsI_03182 [Oryza sativa Indica Group]
Length = 133
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
D +PK+PP+AFF FME+FRK +KE +P+ KS+ VGKA GEKW +M+ +E+ + + A
Sbjct: 45 DRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIAT 104
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESD 125
+++++Y K + +++K+ G +EE++ D
Sbjct: 105 EKRAEYEKPVAEFDKKKESG-ELSEESDYD 133
>gi|115459940|ref|NP_001053570.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|38345400|emb|CAE03091.2| OSJNBa0017B10.6 [Oryza sativa Japonica Group]
gi|113565141|dbj|BAF15484.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|116309704|emb|CAH66751.1| H0409D10.9 [Oryza sativa Indica Group]
gi|116309707|emb|CAH66753.1| OSIGBa0158F05.2 [Oryza sativa Indica Group]
gi|125549359|gb|EAY95181.1| hypothetical protein OsI_16998 [Oryza sativa Indica Group]
gi|149391231|gb|ABR25633.1| hmg1/2-like protein [Oryza sativa Indica Group]
gi|213959192|gb|ACJ54930.1| HMG protein [Oryza sativa Japonica Group]
gi|215767864|dbj|BAH00093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629376|gb|EEE61508.1| hypothetical protein OsJ_15798 [Oryza sativa Japonica Group]
gi|323388963|gb|ADX60286.1| HMG transcription factor [Oryza sativa Japonica Group]
Length = 132
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMS 83
AGKR K A KPKR + FF F+ EFR Q+ E HPN K VA V KAAGEKW++MS
Sbjct: 13 AGKR----KKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMS 68
Query: 84 EDEKAPFVER---AEKRKSDYNKNMQDYNKQLADGVNAAEENE-SDKSKSEVNDEDDEEG 139
++EKA + + E + + +K + + + A A +E E SDKSKS+V D D+ +G
Sbjct: 69 DEEKAQYGGKKPDGESKPAAASKKKESTSSKKAKTDGAEQEGEGSDKSKSDVED-DENDG 127
Query: 140 SGEEE 144
SGE+E
Sbjct: 128 SGEDE 132
>gi|221220618|gb|ACM08970.1| High mobility group protein B3 [Salmo salar]
gi|223646914|gb|ACN10215.1| High mobility group protein B3 [Salmo salar]
gi|223672777|gb|ACN12570.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
++K D DS++ S G GKR KA KDPN PKRPPS FFVF E R + K HPN
Sbjct: 63 QAKQDKARYDSEMTSYGP-PGKRGK--KALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPN 119
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
+ V K GE W ++++ K P++ +A K K Y K++ DY
Sbjct: 120 F-GIGDVAKKLGEMWNNLTDSNKQPYLAKANKLKEKYQKDVADY 162
>gi|221219912|gb|ACM08617.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
++K D DS++ S G GKR KA KDPN PKRPPS FFVF E R + K HPN
Sbjct: 63 QAKQDKARYDSEMTSYGP-PGKRGK--KALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPN 119
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
+ V K GE W ++++ K P++ +A K K Y K++ DY
Sbjct: 120 F-GIGDVAKKLGEMWNNLTDSNKQPYLAKANKLKEKYQKDVADY 162
>gi|359062996|ref|XP_003585778.1| PREDICTED: high mobility group protein B3-like, partial [Bos
taurus]
Length = 186
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 11/133 (8%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAAEENES 124
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY +K DG A +
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGA----A 173
Query: 125 DKSKSEVNDEDDE 137
++ +V +ED+E
Sbjct: 174 KVAQKKVEEEDEE 186
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|213959194|gb|ACJ54931.1| HMG protein [Oryza sativa Japonica Group]
Length = 131
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 74/126 (58%), Gaps = 12/126 (9%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMS 83
AGKR K A KPKR + FF F+ EFR Q+ E HPN K VA V KAAGEKW++MS
Sbjct: 13 AGKR----KKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMS 68
Query: 84 EDEKAPFVERA----EKRKSDYNKNMQDYNKQLADGVNAAEENE-SDKSKSEVNDEDDEE 138
++EKA + + K + K K DG A +E E SDKSKS+V D D+ +
Sbjct: 69 DEEKAQYGGKKPDGESKPAAASKKKSTSSKKAKTDG--AEQEGEGSDKSKSDVED-DEND 125
Query: 139 GSGEEE 144
GSGE+E
Sbjct: 126 GSGEDE 131
>gi|426258242|ref|XP_004022724.1| PREDICTED: high mobility group protein B3 [Ovis aries]
Length = 248
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 135 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 189
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 190 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 231
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 85 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 144
Query: 104 NMQDY 108
M+DY
Sbjct: 145 EMKDY 149
>gi|346986304|ref|NP_001069753.2| high mobility group protein B3 isoform 1 [Bos taurus]
Length = 274
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 138 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 192
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 193 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 234
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 88 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 147
Query: 104 NMQDY 108
M+DY
Sbjct: 148 EMKDY 152
>gi|81673590|gb|AAI09794.1| High-mobility group box 3 [Bos taurus]
gi|296471156|tpg|DAA13271.1| TPA: high mobility group protein B3 isoform 1 [Bos taurus]
Length = 236
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 100 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 154
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 155 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 196
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 50 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 109
Query: 104 NMQDY 108
M+DY
Sbjct: 110 EMKDY 114
>gi|440910877|gb|ELR60625.1| High mobility group protein B3 [Bos grunniens mutus]
Length = 236
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 100 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 154
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 155 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 196
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 50 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 109
Query: 104 NMQDY 108
M+DY
Sbjct: 110 EMKDY 114
>gi|164450473|ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus]
gi|146324910|sp|Q32L31.2|HMGB3_BOVIN RecName: Full=High mobility group protein B3
gi|296471157|tpg|DAA13272.1| TPA: high mobility group protein B3 isoform 2 [Bos taurus]
gi|399227521|gb|AFP36466.1| HMGB3 transcript variant 1/2 [Bos taurus]
gi|399227522|gb|AFP36467.1| HMGB3 transcript variant 3 [Bos taurus]
Length = 200
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|18420676|ref|NP_568431.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|75245985|sp|Q8LDF9.1|HMGB7_ARATH RecName: Full=High mobility group B protein 7; AltName:
Full=Nucleosome/chromatin assembly factor group D 07;
Short=Nucleosome/chromatin assembly factor group D 7
gi|21554154|gb|AAM63233.1| unknown [Arabidopsis thaliana]
gi|26452394|dbj|BAC43282.1| unknown protein [Arabidopsis thaliana]
gi|332005781|gb|AED93164.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 241
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPF 90
K++ NKPKRP +AFF+FM +FRK FK H N S+A K GEKWKS++E+EK +
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 164
Query: 91 VERAEKRKSDYNKNM 105
+++A + K++YNK++
Sbjct: 165 LDKAAELKAEYNKSL 179
>gi|356528116|ref|XP_003532651.1| PREDICTED: high mobility group protein B2-like [Glycine max]
Length = 234
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 58/81 (71%), Gaps = 4/81 (4%)
Query: 36 DPNKPKRPPSAFF----VFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
D KPK+ PSAFF +FME+FRK+F+E +P+ KS+ +GKA GEKWK+M+ +EK +
Sbjct: 41 DAMKPKKSPSAFFPLFSLFMEDFRKEFQEQNPDIKSMYDIGKACGEKWKTMTYEEKVKYY 100
Query: 92 ERAEKRKSDYNKNMQDYNKQL 112
+ A +++ ++++ M +N ++
Sbjct: 101 DIASEKRIEFDRAMAKFNNKM 121
>gi|297812491|ref|XP_002874129.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
gi|297319966|gb|EFH50388.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
Length = 193
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%), Gaps = 3/76 (3%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPF 90
K++ NKPKRP +AFF+FM +FRK FK H N S+A K GEKWKS++E+EK +
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMNDFRKTFKTEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 164
Query: 91 VERAEKRKSDYNKNMQ 106
+++A + K++YNK+++
Sbjct: 165 LDKAAELKAEYNKSLE 180
>gi|148694627|gb|EDL26574.1| mCG10155, isoform CRA_b [Mus musculus]
Length = 206
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 70 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 124
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S++EK P+V +A K K Y K++ DY
Sbjct: 125 -SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 166
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 20 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 79
Query: 104 NMQDY 108
M+DY
Sbjct: 80 EMKDY 84
>gi|148694630|gb|EDL26577.1| mCG10155, isoform CRA_d [Mus musculus]
Length = 220
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 84 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 138
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S++EK P+V +A K K Y K++ DY
Sbjct: 139 -SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 180
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 34 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 93
Query: 104 NMQDY 108
M+DY
Sbjct: 94 EMKDY 98
>gi|148235321|ref|NP_001089163.1| high mobility group box 3 [Xenopus laevis]
gi|55824420|gb|AAV66347.1| high mobility group B3b protein [Xenopus laevis]
gi|114108280|gb|AAI23148.1| LOC734200 protein [Xenopus laevis]
Length = 201
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 8/104 (7%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++K G + GKR KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDFGPVKKGKRN------KDPNAPKRPPSGFFLFCSEFRPKIKSTNPG 117
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ + K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 118 I-SIGDIAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFV 91
A +DP KPK SA+ F++ R++ K+ +P + A K E+W+SMS EK+ F
Sbjct: 2 AKRDPKKPKGKMSAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWRSMSGKEKSKFE 61
Query: 92 ERAEKRKSDYNKNMQDY 108
+ A+ K Y++ M+D+
Sbjct: 62 DLAKADKVRYDREMKDF 78
>gi|9759080|dbj|BAB09558.1| unnamed protein product [Arabidopsis thaliana]
Length = 226
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPF 90
K++ NKPKRP +AFF+FM +FRK FK H N S+A K GEKWKS++E+EK +
Sbjct: 92 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 149
Query: 91 VERAEKRKSDYNKNM 105
+++A + K++YNK++
Sbjct: 150 LDKAAELKAEYNKSL 164
>gi|148682307|gb|EDL14254.1| mCG114640 [Mus musculus]
Length = 200
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S++EK P+V +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|6680231|ref|NP_032279.1| high mobility group protein B3 [Mus musculus]
gi|20138160|sp|O54879.3|HMGB3_MOUSE RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|2738989|gb|AAC16925.1| high mobility group protein homolog HMG4 [Mus musculus]
gi|15030059|gb|AAH11276.1| Hmgb3 protein [Mus musculus]
gi|26327985|dbj|BAC27733.1| unnamed protein product [Mus musculus]
gi|54035419|gb|AAH83352.1| High mobility group box 3 [Mus musculus]
gi|74146994|dbj|BAE27437.1| unnamed protein product [Mus musculus]
gi|74186760|dbj|BAE34835.1| unnamed protein product [Mus musculus]
gi|74192972|dbj|BAE34988.1| unnamed protein product [Mus musculus]
gi|74194280|dbj|BAE24671.1| unnamed protein product [Mus musculus]
gi|148694626|gb|EDL26573.1| mCG10155, isoform CRA_a [Mus musculus]
gi|148694628|gb|EDL26575.1| mCG10155, isoform CRA_a [Mus musculus]
gi|187957408|gb|AAI58038.1| High mobility group box 3 [Mus musculus]
Length = 200
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S++EK P+V +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|255544145|ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 196
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 54/67 (80%)
Query: 43 PPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYN 102
PP+AFF+F++EFRK FKEA+P++K V V K AGEKWK+M+++EK P+ ++A + K++Y+
Sbjct: 103 PPTAFFIFLDEFRKTFKEANPDSKDVKRVAKEAGEKWKAMTDEEKKPYADKATELKAEYD 162
Query: 103 KNMQDYN 109
K + + N
Sbjct: 163 KALGEVN 169
>gi|395857208|ref|XP_003800997.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 225
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
SV V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 119 -SVGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKAMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|413923415|gb|AFW63347.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 95
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 51 MEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
M EFR++++ HP NKSVA V KAAGEKW+SMSE EK P+V++A ++K DY K + K
Sbjct: 1 MSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKKQDYEKTKANIEK 60
Query: 111 QLADGVNAAEENESDKSKSEV 131
+ + A+ ++ D SKSEV
Sbjct: 61 E-STSSKKAKTDDDDGSKSEV 80
>gi|221220328|gb|ACM08825.1| High mobility group protein B3 [Salmo salar]
Length = 203
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
++K D D ++ S G GKR KA KDPN PKRPPS FFVF E R + K HPN
Sbjct: 63 QAKQDKARYDLEMTSYGP-PGKRGK--KALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPN 119
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
+ V K GE W ++++ K P++ +A K K Y K++ DY
Sbjct: 120 F-GIGDVAKKLGEMWNNLTDSNKQPYLAKANKLKEKYQKDVADY 162
>gi|290560936|ref|NP_001166812.1| high mobility group box 3 [Rattus norvegicus]
gi|392354295|ref|XP_003751731.1| PREDICTED: high mobility group protein B3-like isoform 2 [Rattus
norvegicus]
gi|149027076|gb|EDL82825.1| rCG56793 [Rattus norvegicus]
gi|165971283|gb|AAI58740.1| Hmgb3 protein [Rattus norvegicus]
Length = 200
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADY 160
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|392354293|ref|XP_003751730.1| PREDICTED: high mobility group protein B3-like isoform 1 [Rattus
norvegicus]
Length = 241
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 105 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 159
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 160 -SIGDVAKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADY 201
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
R + + T S G R G+R + A DP KPK SA+ F++ R++ K+ +P
Sbjct: 15 RLHSRVLATPSPFSLLGGREGRRHSVRMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPE 74
Query: 65 NK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
+ A K E+WK+MS EK+ F E A+ K Y++ M+DY
Sbjct: 75 VPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDREMKDY 119
>gi|358410870|ref|XP_003581858.1| PREDICTED: high mobility group protein B3-like [Bos taurus]
Length = 197
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLXEKYEKDVADY 160
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|348551110|ref|XP_003461373.1| PREDICTED: high mobility group protein B3-like [Cavia porcellus]
Length = 202
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|354495940|ref|XP_003510086.1| PREDICTED: high mobility group protein B3-like [Cricetulus griseus]
gi|344249016|gb|EGW05120.1| High mobility group protein B3 [Cricetulus griseus]
Length = 200
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|311277128|ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 202
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|395844161|ref|XP_003794831.1| PREDICTED: uncharacterized protein LOC100953571 [Otolemur
garnettii]
Length = 357
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 9/104 (8%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++K G A+ GK+ KDPN PK PPS FF+F EFR + K +P
Sbjct: 231 AKADKVCCDREVKDYGPAKGGKK-------KDPNAPKTPPSGFFLFCSEFRPKIKSTNPG 283
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W S+S+ EK P++ +A + K K++ DY
Sbjct: 284 I-SIGDVAKKLGEMWNSLSDSEKQPYITKAAQLKEKDEKDVADY 326
>gi|350588033|ref|XP_003482539.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
gi|350588037|ref|XP_003482541.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 196
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160
>gi|291410190|ref|XP_002721383.1| PREDICTED: high-mobility group box 3 [Oryctolagus cuniculus]
Length = 215
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 79 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 133
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 134 -SIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADY 175
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 29 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 88
Query: 104 NMQDY 108
M+DY
Sbjct: 89 EMKDY 93
>gi|168056739|ref|XP_001780376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668218|gb|EDQ54830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 66/101 (65%), Gaps = 10/101 (9%)
Query: 18 KSKGA-RAGKRTAKPKAAK---------DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS 67
KS GA ++ KR ++PK K DPN PKRP S F VFME FRK +K+A+P +K
Sbjct: 79 KSDGAIKSTKRKSEPKVIKKQAKKVKTKDPNAPKRPASGFLVFMESFRKTYKDANPESKG 138
Query: 68 VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
VA KA GEKWK M+E+E+AP+ + AE RK +Y + M +Y
Sbjct: 139 VAAAAKAGGEKWKQMTEEERAPYNKDAEARKLNYEQAMTNY 179
>gi|403305854|ref|XP_003943467.1| PREDICTED: high mobility group protein B3 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVCYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSEFDEMAKADKVCYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|356510782|ref|XP_003524113.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 165
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
++ K K D K K+P S FF F+E+FRK+F+ +P+ KS +GKA+ +KWK+M+
Sbjct: 52 SRKKLKAKQKFDAMKQKKPLSGFFYFLEDFRKEFQVRNPDVKSKRDIGKASAKKWKTMTY 111
Query: 85 DEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEE 143
+EKA + + A K+ +++ M ++NK++ ++ +E + DE DEE +E
Sbjct: 112 EEKAQYFDIATKKHDEFDSAMAEFNKKMISNLSFLLASE-----LTLVDETDEESEFDE 165
>gi|392333067|ref|XP_003752781.1| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
gi|392353165|ref|XP_001067503.2| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
Length = 212
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 8/104 (7%)
Query: 6 SKADAVGTDSKLK-SKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V ++K + A+ GK+ KDPN PKRPPS FF+F EFR + K A+P
Sbjct: 78 AKADKVRYGREMKDYESAKGGKKK------KDPNAPKRPPSGFFLFCSEFRPKIKSANPG 131
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 132 I-SIEDVVKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADY 174
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K +P + A K E+WK+MS EK+ F E A+ K Y +
Sbjct: 28 SAYAFFVQTCREEHKTKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYGR 87
Query: 104 NMQDY 108
M+DY
Sbjct: 88 EMKDY 92
>gi|355705241|gb|EHH31166.1| hypothetical protein EGK_21042 [Macaca mulatta]
Length = 200
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKLKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|432953329|ref|XP_004085352.1| PREDICTED: high mobility group protein B2-like isoform 1 [Oryzias
latipes]
Length = 200
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFFVF E+R K+ +P S+ K GE W +S+ EK P+ E+A
Sbjct: 92 KDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKLSQSEKQPYEEKA 150
Query: 95 EKRKSDYNKNMQDY 108
+K + Y+++M Y
Sbjct: 151 QKLREKYDRDMVAY 164
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHP-NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KD NKPK SA+ F++ R++ ++ +P + + A K E+WK++S +K F +
Sbjct: 4 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSPSDKKCFEDM 63
Query: 94 AEKRKSDYNKNMQDY 108
A+ K YN+ M DY
Sbjct: 64 AKADKVRYNREMCDY 78
>gi|410256410|gb|JAA16172.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|351715334|gb|EHB18253.1| High mobility group protein B3, partial [Heterocephalus glaber]
Length = 151
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPP FF+F EFR + K +P
Sbjct: 15 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPPGFFLFFSEFRPKIKSTNPGI 69
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ DY
Sbjct: 70 -SIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADY 111
>gi|395754558|ref|XP_002832281.2| PREDICTED: high mobility group protein B3 isoform 2 [Pongo abelii]
Length = 199
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|47190944|emb|CAF93003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 204
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFFVF E+R K+ P S+ K GE W +S+ EK P+ E+A
Sbjct: 95 KDPNAPKRPPSAFFVFCSEYRPSVKQQFPGL-SIGDCAKKLGEMWSKLSQSEKQPYEEKA 153
Query: 95 EKRKSDYNKNMQDYNKQLADGVNAAEEN 122
+K + Y+++M Y GV+ A N
Sbjct: 154 QKLREKYDRDMVAYR----GGVSYAARN 177
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHP-NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KD NKPK SA+ F++ R++ ++ +P + + A K E+WK++S +K F +
Sbjct: 7 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSAGDKKCFEDM 66
Query: 94 AEKRKSDYNKNMQDY 108
A+ K YN+ M+DY
Sbjct: 67 AKADKVRYNREMRDY 81
>gi|348543650|ref|XP_003459296.1| PREDICTED: high mobility group protein B2-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFFVF E+R K+ +P S+ K GE W +S+ EK P+ E+A
Sbjct: 92 KDPNAPKRPPSAFFVFCSEYRPSVKQQYPGL-SIGDCAKKLGEMWSKLSQSEKQPYEEKA 150
Query: 95 EKRKSDYNKNMQDY 108
+K + Y+++M Y
Sbjct: 151 QKLREKYDRDMVAY 164
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHP-NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KD NKPK SA+ F++ R++ ++ +P + + A K E+WK++S +K F +
Sbjct: 4 KDINKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSPSDKKCFEDM 63
Query: 94 AEKRKSDYNKNMQDY 108
A+ K YN+ M+DY
Sbjct: 64 AKADKVRYNREMKDY 78
>gi|145536343|ref|XP_001453899.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421632|emb|CAK86502.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
LK + T + K +DPN PK+P +AFF+F +++R++ E +P K + + + AG
Sbjct: 29 LKDQNVPEIPTTTEKKKERDPNAPKKPLTAFFLFNQKYRQKVVERNPEIK-LTQISQMAG 87
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDD 136
KW SMSE EK P++++ K Y++ ++DYN++ N E N+ + KSE DE
Sbjct: 88 NKWTSMSEQEKKPYLDQYNAAKEKYDQELKDYNEK-----NGIETNDKKRKKSEKFDEKS 142
Query: 137 EEGSGEEEDDD 147
+ + + DD
Sbjct: 143 MKSAVDHNVDD 153
>gi|410219302|gb|JAA06870.1| high mobility group box 3 [Pan troglodytes]
Length = 199
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|296236643|ref|XP_002763412.1| PREDICTED: high mobility group protein B3-like [Callithrix jacchus]
Length = 203
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|167773205|gb|ABZ92037.1| high-mobility group box 3 [synthetic construct]
Length = 198
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|109132602|ref|XP_001091672.1| PREDICTED: high mobility group protein B3-like isoform 3 [Macaca
mulatta]
gi|109132606|ref|XP_001091441.1| PREDICTED: high mobility group protein B3-like isoform 1 [Macaca
mulatta]
gi|402911729|ref|XP_003918461.1| PREDICTED: high mobility group protein B3 isoform 1 [Papio anubis]
gi|402911731|ref|XP_003918462.1| PREDICTED: high mobility group protein B3 isoform 2 [Papio anubis]
Length = 201
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|71143137|ref|NP_005333.2| high mobility group protein B3 [Homo sapiens]
gi|426397735|ref|XP_004065062.1| PREDICTED: high mobility group protein B3 isoform 1 [Gorilla
gorilla gorilla]
gi|426397739|ref|XP_004065064.1| PREDICTED: high mobility group protein B3 isoform 3 [Gorilla
gorilla gorilla]
gi|85701353|sp|O15347.4|HMGB3_HUMAN RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|47124341|gb|AAH70482.1| HMGB3 protein [Homo sapiens]
gi|117645316|emb|CAL38124.1| hypothetical protein [synthetic construct]
gi|117646384|emb|CAL38659.1| hypothetical protein [synthetic construct]
gi|119619803|gb|EAW99397.1| high-mobility group box 3, isoform CRA_a [Homo sapiens]
gi|410351655|gb|JAA42431.1| high mobility group box 3 [Pan troglodytes]
gi|410351657|gb|JAA42432.1| high mobility group box 3 [Pan troglodytes]
Length = 200
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|2285963|emb|CAA71143.1| high mobility group protein 2a [Homo sapiens]
Length = 200
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK++S EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|431920081|gb|ELK18129.1| High mobility group protein B3 [Pteropus alecto]
Length = 255
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 116 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 170
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 171 -SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 212
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 66 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 125
Query: 104 NMQDY 108
M+DY
Sbjct: 126 EMKDY 130
>gi|397466921|ref|XP_003805186.1| PREDICTED: high mobility group protein B3 [Pan paniscus]
gi|410057106|ref|XP_001135676.3| PREDICTED: high mobility group protein B3 isoform 1 [Pan
troglodytes]
gi|426397737|ref|XP_004065063.1| PREDICTED: high mobility group protein B3 isoform 2 [Gorilla
gorilla gorilla]
gi|119619804|gb|EAW99398.1| high-mobility group box 3, isoform CRA_b [Homo sapiens]
Length = 220
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 84 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 138
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 139 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 180
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 34 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 93
Query: 104 NMQDY 108
M+DY
Sbjct: 94 EMKDY 98
>gi|297812105|ref|XP_002873936.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
gi|297319773|gb|EFH50195.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K++ NKPKRP +AFF+FM +FRK FK H N K GEKW S++EDEK ++
Sbjct: 104 KSSSTSNKPKRPLTAFFIFMNDFRKTFKTEH-NGSFAKDAAKIGGEKWMSLTEDEKKVYL 162
Query: 92 ERAEKRKSDYNK 103
++A + K++YNK
Sbjct: 163 DKAAELKAEYNK 174
>gi|410930542|ref|XP_003978657.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 201
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFFVF E+R K+ +P S+ K GE W +++ EK P+ E+A
Sbjct: 92 KDPNAPKRPPSAFFVFCSEYRPSVKQQYPGL-SIGDCAKKLGEMWSKLTQSEKQPYEEKA 150
Query: 95 EKRKSDYNKNMQDY 108
+K + Y+++M Y
Sbjct: 151 QKLREKYDRDMVAY 164
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHP-NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KD NKPK SA+ F++ R++ ++ +P + + A K E+WK +S +K F +
Sbjct: 4 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKGLSASDKKCFEDM 63
Query: 94 AEKRKSDYNKNMQDY 108
A+ K YN+ M+DY
Sbjct: 64 AKADKVRYNREMRDY 78
>gi|414869181|tpg|DAA47738.1| TPA: hypothetical protein ZEAMMB73_864709 [Zea mays]
Length = 198
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 12 GTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATV 71
G + +L + G AGKR K KPKRPPSAFFVFM EFR++++ HP NKS+ V
Sbjct: 131 GDNERLWAAGI-AGKR----KKVIMSGKPKRPPSAFFVFMSEFRQEYQVQHPGNKSIVVV 185
Query: 72 GKAAGEKWKS 81
K AGEKW +
Sbjct: 186 SKTAGEKWHA 195
>gi|349604600|gb|AEQ00107.1| High mobility group protein B3-like protein, partial [Equus
caballus]
Length = 118
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPS FF+F EFR + K +P S+ V K GE W ++S+ EK P+ +A
Sbjct: 5 KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYNNKA 63
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ DY
Sbjct: 64 AKLKEKYEKDVADY 77
>gi|347921933|ref|NP_990626.2| high mobility group protein B3 [Gallus gallus]
Length = 217
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPSAFF+F EFR + K +P
Sbjct: 79 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSAFFLFCSEFRPKIKSTNPGI 133
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 134 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 175
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EKA F E A+ K Y++
Sbjct: 29 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 88
Query: 104 NMQDY 108
M+DY
Sbjct: 89 EMKDY 93
>gi|729728|sp|P40618.2|HMGB3_CHICK RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|63494|emb|CAA45065.1| HMG2a [Gallus gallus]
Length = 202
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPSAFF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSAFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EKA F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|355762621|gb|EHH62030.1| hypothetical protein EGM_20207 [Macaca fascicularis]
Length = 201
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVPKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|145480005|ref|XP_001426025.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393097|emb|CAK58627.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 8/86 (9%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN--------NKSVATVGKAAGEKWKSMS 83
K +DPN PKRP +AFF+F +++R++ E +P + + + AG+KW+SMS
Sbjct: 25 KKERDPNAPKRPLTAFFLFSQKYREKVLERNPGIDLSDYQLEVKLIQISQMAGQKWQSMS 84
Query: 84 EDEKAPFVERAEKRKSDYNKNMQDYN 109
E EK P+V++ + KS YN ++++YN
Sbjct: 85 EQEKQPYVDQYNQAKSKYNDDVKEYN 110
>gi|254826706|ref|NP_001157151.1| high mobility group protein B3 [Monodelphis domestica]
gi|253756818|gb|ACT35166.1| HmgB3x [Monodelphis domestica]
Length = 201
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-G 117
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S++EK P+ +A K K Y K++ DY
Sbjct: 118 ISIGDVAKKLGEMWNNLSDNEKQPYNNKAAKLKEKYEKDVADY 160
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|344299188|ref|XP_003421269.1| PREDICTED: high mobility group protein B3-like [Loxodonta africana]
Length = 200
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S++EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDNEKQPYNNKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|213982973|ref|NP_001135648.1| uncharacterized protein LOC100216207 [Xenopus (Silurana)
tropicalis]
gi|156914901|gb|AAI52619.1| Hmgb2 protein [Danio rerio]
gi|197245630|gb|AAI68534.1| Unknown (protein for MGC:181066) [Xenopus (Silurana) tropicalis]
Length = 214
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGK-RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++K+ G +T + K KDPN PKRPPSAFFVF E+R K HPN
Sbjct: 64 AKADKVRYDREMKTYVPPKGVGKTGRKK--KDPNAPKRPPSAFFVFCSEYRPTVKSEHPN 121
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ + K GE W S ++APF ++A K + Y K + Y
Sbjct: 122 L-TIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKYEKEVAAY 164
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
D NKPK SA+ F++ R + K P+ + + K E+WKS++ +K F + A
Sbjct: 5 DVNKPKGKTSAYAFFVQTCRDEHKRKGPDVPVNFSEFSKKCSERWKSLNASDKVKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y++ M+ Y
Sbjct: 65 KADKVRYDREMKTY 78
>gi|52219178|ref|NP_001004674.1| high-mobility group box 2b [Danio rerio]
gi|51858850|gb|AAH81415.1| High-mobility group box 2 [Danio rerio]
gi|182889482|gb|AAI65150.1| Hmgb2 protein [Danio rerio]
Length = 214
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGK-RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++K+ G +T + K KDPN PKRPPSAFFVF E+R K HPN
Sbjct: 64 AKADKVRYDREMKTYVPPKGVGKTGRKK--KDPNAPKRPPSAFFVFCSEYRPTVKSEHPN 121
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ + K GE W S ++APF ++A K + Y K + Y
Sbjct: 122 L-TIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKYEKEVAAY 164
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
D NKPK SA+ F++ R + K P+ + + K E+WKS++ +K F + A
Sbjct: 5 DVNKPKGKTSAYAFFVQTCRDEHKRKSPDVPVNFSEFSKKCSERWKSLNASDKVKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y++ M+ Y
Sbjct: 65 KADKVRYDREMKTY 78
>gi|205539816|sp|P0C6E5.1|HG3BL_HUMAN RecName: Full=Putative high mobility group protein B3-like protein
Length = 187
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 9/104 (8%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++K G A+ GK+ KDPN PKRPPS FF+F EF + K +P
Sbjct: 64 AKADKVHYDQEIKDYGPAKGGKK-------KDPNAPKRPPSGFFLFCSEFCPKSKSTNPG 116
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
+ V K GE WK++++ EK P++ +A K K Y K++ Y
Sbjct: 117 I-PIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVY 159
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS+ EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 104 NMQDY 108
++DY
Sbjct: 74 EIKDY 78
>gi|281338637|gb|EFB14221.1| hypothetical protein PANDA_014002 [Ailuropoda melanoleuca]
Length = 168
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|57112857|ref|XP_538194.1| PREDICTED: high mobility group protein B3 [Canis lupus familiaris]
gi|338729649|ref|XP_001505130.3| PREDICTED: high mobility group protein B3-like isoform 1 [Equus
caballus]
Length = 201
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|417396975|gb|JAA45521.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 200
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|301778413|ref|XP_002924621.1| PREDICTED: high mobility group protein B3-like [Ailuropoda
melanoleuca]
Length = 201
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius]
Length = 204
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA KDPN PKRPPS FFVF E R + K HP+ + V K GE W ++++ K P++
Sbjct: 87 KAKKDPNAPKRPPSGFFVFCAEQRPKIKAQHPSF-GIGDVAKKLGEAWNNLTDSSKQPYL 145
Query: 92 ERAEKRKSDYNKNMQDYNK 110
+A K K Y K++ DY +
Sbjct: 146 AKANKLKEKYRKDVADYKR 164
>gi|148234528|ref|NP_001080836.1| high mobility group box 1 [Xenopus laevis]
gi|32450384|gb|AAH54148.1| Hmgb1-prov protein [Xenopus laevis]
Length = 211
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K+ G+ K KDPN PKRPPSAFF+F EFR + K HP +
Sbjct: 64 AKADKVRYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGS 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ + K GE W + + D+K PF +A K K Y K++ Y
Sbjct: 121 -TIGDIAKKLGEMWNNTATDDKLPFERKAAKLKEKYEKDVAAY 162
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + A K E+WK+MS EK+ F + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|395545985|ref|XP_003774876.1| PREDICTED: high mobility group protein B3-like [Sarcophilus
harrisii]
Length = 201
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|149410917|ref|XP_001509199.1| PREDICTED: high mobility group protein B3-like isoform 1
[Ornithorhynchus anatinus]
gi|345306624|ref|XP_003428488.1| PREDICTED: high mobility group protein B3-like isoform 2
[Ornithorhynchus anatinus]
Length = 201
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|410989557|ref|XP_004001438.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Felis catus]
Length = 201
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|66840992|emb|CAI64395.1| putative high mobility group protein [Triticum aestivum]
Length = 112
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
KPKR P+ FF F+ EFR Q+ E HP K VA V KAAGEKW+SMS++EKA +
Sbjct: 22 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSDEEKAKY 73
>gi|253756810|gb|ACT35162.1| HmgB3y, partial [Monodelphis domestica]
Length = 193
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD + D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 61 AKADKLRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 115
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S++EK P+ +A K K Y K++ DY
Sbjct: 116 -SIGDVAKKLGEMWNNLSDNEKQPYNNKAAKLKEKYEKDVADY 157
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KPK SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A
Sbjct: 2 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKNMSGKEKSKFDEMA 61
Query: 95 EKRKSDYNKNMQDY 108
+ K Y++ M+DY
Sbjct: 62 KADKLRYDREMKDY 75
>gi|355694844|gb|AER99804.1| high-mobility group box 3 [Mustela putorius furo]
Length = 197
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 66 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 121 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 162
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 16 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 75
Query: 104 NMQDY 108
M+DY
Sbjct: 76 EMKDY 80
>gi|56384901|gb|AAV85889.1| high mobility group 1 protein [Pelodiscus sinensis]
Length = 202
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|148238271|ref|NP_001081794.1| high mobility group protein-1 [Xenopus laevis]
gi|709959|gb|AAC59859.1| high mobility group protein-1 [Xenopus laevis]
Length = 210
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++KS G+ K KDPN PKRPPSAFF+F +FR + K HP +
Sbjct: 63 AKADKVRYEREMKSYIPPKGETK---KRFKDPNAPKRPPSAFFLFCSDFRPKIKGEHPGS 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ + K GE W + + D+K P+ RA K K Y K++ Y
Sbjct: 120 -TIGDIAKKLGEMWNNTATDDKLPYERRAAKLKEKYEKDVAAY 161
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + A K E+WK+MS+ EK F + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSK-EKTKFEDMA 63
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 64 KADKVRYEREMKSY 77
>gi|49115548|gb|AAH73449.1| HMG-1 protein [Xenopus laevis]
Length = 210
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++KS G+ K KDPN PKRPPSAFF+F +FR + K HP +
Sbjct: 63 AKADKVRYEREMKSYIPPKGETK---KRFKDPNAPKRPPSAFFLFCSDFRPKIKGEHPGS 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ + K GE W + + D+K P+ RA K K Y K++ Y
Sbjct: 120 -TIGDIAKKLGEMWNNTATDDKLPYERRAAKLKEKYEKDVAAY 161
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + A K E+WK+MS+ EK F + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSK-EKTKFEDMA 63
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 64 KADKVRYEREMKSY 77
>gi|547652|sp|P36194.2|HMGB1_CHICK RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|391636|dbj|BAA03260.1| HMG-1 [Gallus gallus]
Length = 201
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 63 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 118 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 159
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
SA+ F++ R++ K+ + A K E+WK+MS EKA F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDRE 73
Query: 105 MQDY 108
M+DY
Sbjct: 74 MKDY 77
>gi|449269345|gb|EMC80131.1| High mobility group protein B3 [Columba livia]
Length = 202
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EKA F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEIPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|224098124|ref|XP_002198052.1| PREDICTED: high mobility group protein B3 isoform 1 [Taeniopygia
guttata]
gi|326924638|ref|XP_003208532.1| PREDICTED: high mobility group protein B3-like [Meleagris
gallopavo]
gi|449498655|ref|XP_004177286.1| PREDICTED: high mobility group protein B3 isoform 2 [Taeniopygia
guttata]
Length = 202
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EKA F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|170784871|ref|NP_001116308.1| wu:fk52f12 [Danio rerio]
Length = 213
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
GKR K KDPN PKRPPS FF+F E R Q K +P+ + V K GE W +++
Sbjct: 81 GKRGKK----KDPNAPKRPPSGFFLFCSEHRPQIKAQYPSL-GIGDVAKKLGEMWNGLTD 135
Query: 85 DEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVN 117
K PF+ +A K K Y K++ DY K A GV+
Sbjct: 136 ANKQPFLMKANKLKDKYQKDVADYKTKSKAGGVS 169
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KPK SA+ F++ R++ K+ P S + K +WK+M++ EK+ F + A
Sbjct: 5 DPRKPKGKMSAYAYFVQTCREEHKKKSPEIPVSFSEFSKRCSGRWKAMTDKEKSRFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
++ K Y++ M Y
Sbjct: 65 KQDKVRYDQEMMHY 78
>gi|320091041|gb|ADW08807.1| high mobility group box X [Lethenteron camtschaticum]
Length = 225
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
++AD D+++K AR G+ + KDPN PKRPPSAFF+F +FR Q K +P
Sbjct: 64 ARADKTRYDTEMKDYAPARGGRGGPAQRKKKDPNAPKRPPSAFFIFCADFRPQIKADNP- 122
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
+ T+ K GE W + + KAP+ +A K Y K++ Y +
Sbjct: 123 GMVIGTIAKRLGEMWGRQTNENKAPYEHKANILKEKYKKDVAAYQR 168
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERA 94
DP+KP+ S++ F++ R++ K+ HPN+ T + E+WK +S EK F + A
Sbjct: 5 DPSKPRGRMSSYAYFVQTCREEHKKKHPNDSVAFTDFSRKCSERWKGLSPKEKLRFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
K+ Y+ M+DY
Sbjct: 65 RADKTRYDTEMKDY 78
>gi|45361297|ref|NP_989226.1| high mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|38969943|gb|AAH63332.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89267209|emb|CAJ81415.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89272910|emb|CAJ82928.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
Length = 211
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K+ G+ K KDPN PKRPPSAFF+F EFR + K HP +
Sbjct: 64 AKADKVRYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGS 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ + K GE W + + D+K P+ +A K K Y K++ Y
Sbjct: 121 -TIGDIAKKLGEMWNNTATDDKLPYERKAAKLKEKYEKDVAAY 162
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + A K E+WK+MS EK+ F + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|225195617|gb|ACN82086.1| high-mobility group box 1 [Carassius auratus]
gi|225195619|gb|ACN82087.1| high-mobility group box 1 [Megalobrama amblycephala]
gi|225195623|gb|ACN82089.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F EFR + KE P S+ V K GE W S +EK PF ++A
Sbjct: 78 KDPNAPKRPPSAFFIFCSEFRPKVKEETPGL-SIGDVAKKLGEMWNKTSAEEKQPFEKKA 136
Query: 95 EKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 127
+ K Y K++ Y + G A ++ DK+
Sbjct: 137 ARLKEKYEKDITAYRSKGKVGGPAKAPSKPDKA 169
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
S++ F++ R++ K+ HP + + K E+WK+MS EK F + A++ K Y +
Sbjct: 2 SSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYER 61
Query: 104 NMQDY 108
M++Y
Sbjct: 62 EMKNY 66
>gi|349802605|gb|AEQ16775.1| putative high mobility group box 3 [Pipa carvalhoi]
Length = 149
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPS FF+F EFR + K +P S+ V K GE W +++E EK P+ +A
Sbjct: 64 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNEGEKQPYNNKAA 122
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ DY
Sbjct: 123 KLKEKYEKDVADY 135
>gi|52345682|ref|NP_001004888.1| high mobility group box 3 [Xenopus (Silurana) tropicalis]
gi|49522962|gb|AAH75290.1| MGC88931 protein [Xenopus (Silurana) tropicalis]
gi|89267024|emb|CAJ81774.1| high-mobility group box 3 [Xenopus (Silurana) tropicalis]
Length = 202
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDFGP-----VKKGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P+ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDGEKQPYNNKAAKLKEKYEKDVADY 160
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F + A+ K Y++
Sbjct: 14 SAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWKTMSAKEKSKFDDLAKADKVRYDR 73
Query: 104 NMQDY 108
M+D+
Sbjct: 74 EMKDF 78
>gi|403295522|ref|XP_003938690.1| PREDICTED: high mobility group protein B3-like [Saimiri boliviensis
boliviensis]
Length = 202
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN KRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPNASKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFV 91
A DP KPK SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F
Sbjct: 2 AKCDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD 61
Query: 92 ERAEKRKSDYNKNMQDY 108
E A+ K Y++ M+DY
Sbjct: 62 EMAKADKVRYDREMKDY 78
>gi|148229870|ref|NP_001080585.1| high mobility group box 3 [Xenopus laevis]
gi|27882654|gb|AAH44009.1| Hmgb3-prov protein [Xenopus laevis]
Length = 202
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D +++ G K K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMQDFGP-----VKKGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAA 119
++ V K GE W ++S+ EK P+ + K K Y K++ DY +K DG AA
Sbjct: 119 -TIGDVAKKLGEMWNNLSDSEKQPYNNKGAKLKEKYEKDVADYKSKGKFDGAKAA 172
>gi|223942599|gb|ACN25383.1| unknown [Zea mays]
gi|414881085|tpg|DAA58216.1| TPA: hypothetical protein ZEAMMB73_949955 [Zea mays]
Length = 118
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 11/96 (11%)
Query: 24 AGKRTAKPKAAK--DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKS 81
+ KR +PK A DP PK+PP+AFF FME+FRK +K+ P+ KS+ +GKA GEKW +
Sbjct: 23 STKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKWNT 82
Query: 82 MS---------EDEKAPFVERAEKRKSDYNKNMQDY 108
M+ D + P V +D N + +
Sbjct: 83 MTFEVSIFSLQPDSRVPLVIYHLMLPADVNCLIPQW 118
>gi|351706443|gb|EHB09362.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 226
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V D ++K G K KDPN PKRPPS FF+F EFR + K P
Sbjct: 83 AKVDKVCHDQEMKDCGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTKPGI 137
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ V K GE W ++S+ EK P++ + K K + K++ DY
Sbjct: 138 -TIGDVAKKLGEMWNNLSDSEKQPYITKVAKLKEKHEKDVADY 179
>gi|291403518|ref|XP_002718101.1| PREDICTED: high mobility group box 3-like [Oryctolagus cuniculus]
Length = 197
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDWEMKDYGP-----AKGGKKKKDPNAPKRPPSRFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ +K ++ +A K K Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSDKQQYITKAAKLKEKYEKDVTDY 160
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y+
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDW 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|171848939|pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From High
Mobility Group Protein B3
Length = 81
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPS FF+F EFR + K +P S+ V K GE W ++++ EK P++ +A K
Sbjct: 8 NAPKRPPSGFFLFCSEFRPKIKSTNPG-ISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 66
Query: 98 KSDYNKNMQDY 108
K Y K++ DY
Sbjct: 67 KEKYEKDVADY 77
>gi|223649496|gb|ACN11506.1| High mobility group protein B3 [Salmo salar]
Length = 207
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPS FF+F + R + K HP + + V K GE+W ++++ K P++ +A
Sbjct: 88 KDPNAPKRPPSGFFIFCADHRPKIKAQHP-SLGIGDVAKKLGEQWNNLTDATKQPYLIKA 146
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ DY
Sbjct: 147 NKLKDKYQKDVADY 160
>gi|410917315|ref|XP_003972132.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 214
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D + D +++S G + ++ K KDPN PKRPPSAFFVF + R + KE +P
Sbjct: 62 AKTDKIRYDQEMQSYVPPKGSKVSR-KKKKDPNAPKRPPSAFFVFCSDHRPKIKEDNPGI 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ + K GE W + +KAP+ RA K K Y K++ Y
Sbjct: 121 -SIGDIAKKLGELWSTQGPKDKAPYEARAAKLKEKYEKDVAAY 162
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVER 93
KD +PK S++ F+ R + K+ HP + + K E+WK+MS EK+ F E
Sbjct: 2 KDHGRPKGKMSSYAFFVTTCRDEHKKKHPGTPVNFSEFSKKCSERWKNMSSKEKSKFEEL 61
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y++ MQ Y
Sbjct: 62 AKTDKIRYDQEMQSY 76
>gi|225195621|gb|ACN82088.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F EFR + KE P S+ V K GE W S +EK P+ ++A
Sbjct: 78 KDPNAPKRPPSAFFIFCAEFRPKVKEETPGL-SIGDVAKKLGEMWNKTSSEEKQPYEKKA 136
Query: 95 EKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 127
+ K Y K++ Y + G A ++ DK+
Sbjct: 137 ARLKEKYEKDITAYRSKGKVGGPAKAPSKPDKA 169
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
S++ F++ R++ K+ HP + + K E+WK+MS EK F + A+ K+ Y +
Sbjct: 2 SSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYER 61
Query: 104 NMQDY 108
M++Y
Sbjct: 62 EMKNY 66
>gi|162460188|ref|NP_001105108.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|4995921|emb|CAB44297.1| HMG1 protein [Zea mays]
Length = 123
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KR + FF F+ EFR Q+ E HP K V V KAAGEKW+SMS++EKA + ++
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGSSKKQDGKA 79
Query: 101 YNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEEEDD 146
K K AD E S+KSKSEV EDDE+ E+ED+
Sbjct: 80 SKKENTSSKKAKADVREGDEAEGSNKSKSEV--EDDEQDGNEDEDE 123
>gi|195627962|gb|ACG35811.1| HMG1/2-like protein [Zea mays]
Length = 123
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KR + FF F+ EFR Q+ E HP K V V KAAGEKW+SMS++EKA + ++
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGSSKKQDGKA 79
Query: 101 YNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEEEDD 146
K K AD E S+KSKSEV EDDE+ E+ED+
Sbjct: 80 SKKENTSSKKAKADIREGDEAEGSNKSKSEV--EDDEQDGNEDEDE 123
>gi|392337480|ref|XP_003753270.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343959|ref|XP_003748829.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ + A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWTNTAADDKQPYGKMA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|395847762|ref|XP_003796535.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 255
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 7 KADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
KAD V D ++K G A+ GK+ KDPN P RPPS F +F EF + K +P
Sbjct: 89 KADKVCYDREMKDYGLAKGGKK-------KDPNAPTRPPSGFCLFCSEFHPKIKSTNPGI 141
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K E W ++S EK P++ +A + + Y K++ DY
Sbjct: 142 -SIGDVAKKLSEMWSNLSGSEKQPYITKAAQLREKYEKDVADY 183
>gi|387016392|gb|AFJ50315.1| High mobility group protein B1 [Crotalus adamanteus]
Length = 215
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
++AD V + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP
Sbjct: 64 ARADKVRYEREMKTYVPPKGESK---KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + S ++K PF ++A K K Y K++ Y
Sbjct: 121 -SIGDVAKKLGEMWNNTSSEDKQPFEKKAGKLKEKYEKDIAAY 162
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
K Y + M+ Y
Sbjct: 65 RADKVRYEREMKTY 78
>gi|358337037|dbj|GAA55457.1| structure-specific recognition protein 1 [Clonorchis sinensis]
Length = 723
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K K KDPN P RPP+A+ ++ E R + ++ N SVA V KAAGE+W+++ + KA
Sbjct: 569 KKKRVKDPNAPSRPPTAYIMWFNEHRDEISKSIGNPTSVAEVAKAAGERWRNIDSETKAK 628
Query: 90 FVERAEKRKSDYNKNMQDYNKQLADG 115
+ R ++ K +Y M+ Y ++A G
Sbjct: 629 YQARVDELKKNYESEMRIYRNKIASG 654
>gi|332260744|ref|XP_003279440.1| PREDICTED: uncharacterized protein LOC100604184 [Nomascus
leucogenys]
Length = 414
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D K+K G G K KDPN P+RP S FF+F EFR + K +P
Sbjct: 64 AKADKVHYDQKIKDYGPATGG-----KKKKDPNAPQRPLSGFFLFCSEFRPKIKSTNPGK 118
Query: 66 KSVATVGKAA---GEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
+ G A GE WK++++ EK P + +A K K Y K++
Sbjct: 119 TGIFGFGDVAKKLGEMWKNLNDSEKQPHITQAAKLKEKYEKDV 161
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KPK SA+ F++ R++ K+ +P + A K E+WK++SE +K+ F E A
Sbjct: 5 DPTKPKGKMSAYAFFVQTCREEHKKKNPKVPVNFAEFSKKCSERWKTISEKKKSEFNELA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y++ ++DY
Sbjct: 65 KADKVHYDQKIKDY 78
>gi|357139210|ref|XP_003571177.1| PREDICTED: high mobility group B protein 13-like [Brachypodium
distachyon]
Length = 537
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+KPK+P SA+FV+ +E R K+V +GK GE+WKSM++ +KAP+ E A
Sbjct: 325 DPSKPKQPMSAYFVYSQERRAAL---VAEKKNVPEIGKITGEEWKSMTDAQKAPYEEVAS 381
Query: 96 KRKSDYNKNMQDY 108
K+K +Y+K M+ Y
Sbjct: 382 KQKEEYHKQMEVY 394
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPN+PK+P S+F +F +E RKQ E P NN +T+ KWK +S EK + E+
Sbjct: 450 DPNRPKKPASSFLLFSKEARKQLVEERPGVNN---STINALISVKWKELSGTEKKTWSEK 506
Query: 94 AEKRKSDYNKNMQDYN 109
A + + Y + M++Y
Sbjct: 507 AAEGMAAYKREMEEYT 522
>gi|410256408|gb|JAA16171.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDP+ PKRPPS FF+F E R + K +P
Sbjct: 64 AKADKVRYDREMKDYGP-----AKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
SV V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 119 -SVGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|414585862|tpg|DAA36433.1| TPA: HMG1 protein [Zea mays]
Length = 123
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KR + FF F+ EFR Q+ E HP K V V KAAGEKW+SMS++EKA + ++
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGGSKKQDGKA 79
Query: 101 YNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEEEDD 146
K K AD E S+KSKSEV EDDE+ E+ED+
Sbjct: 80 SKKENTSSKKAKADVREGDEAEGSNKSKSEV--EDDEQDGNEDEDE 123
>gi|56788496|gb|AAW29969.1| unknown [Sus scrofa]
gi|56792880|gb|AAW30632.1| unknown [Sus scrofa]
Length = 193
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ + A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKXA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|224080027|ref|XP_002305996.1| high mobility group family [Populus trichocarpa]
gi|222848960|gb|EEE86507.1| high mobility group family [Populus trichocarpa]
Length = 165
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 52/71 (73%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
+AFF F+E+FRK+F+E +P+ KS+ VGKA GEKWK+M+ +EK + + A ++++++++
Sbjct: 82 TAFFYFLEDFRKEFQEQNPDVKSMREVGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRA 141
Query: 105 MQDYNKQLADG 115
+Y K+ G
Sbjct: 142 TSEYIKRKESG 152
>gi|225708606|gb|ACO10149.1| High mobility group protein B2 [Osmerus mordax]
Length = 216
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 6 SKADAVGTDSKLKS----KGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEA 61
+K D V D ++K KG + GKR KDPN PKRPPSAFFVF + R + K
Sbjct: 64 AKGDKVRFDREMKGYVPPKGTKVGKRK------KDPNAPKRPPSAFFVFCSDHRARIKGE 117
Query: 62 HPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
HP S+ + K GE W + +K P+ +A K K Y K++ Y + G
Sbjct: 118 HPGI-SIGDIAKKLGELWSKQTPKDKVPYEAKAGKLKEKYEKDVAAYRAKSGAG 170
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVE 92
KDPNKP+ S++ F++ R++ K+ HP + + K E+WK+MS EK F +
Sbjct: 3 GKDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMSAKEKVKFED 62
Query: 93 RAEKRKSDYNKNMQDY 108
A+ K +++ M+ Y
Sbjct: 63 LAKGDKVRFDREMKGY 78
>gi|169409528|gb|ACA57879.1| High mobility group protein B3 (predicted) [Callicebus moloch]
Length = 193
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +
Sbjct: 64 AKADKVRYDQEMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTN-LG 117
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ +K P++ +A K K Y K++ DY
Sbjct: 118 ISIGDVAKKLGEMWNNLNDSKKQPYITKAAKLKEKYEKDVADY 160
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEAPVNFAEFSKKCPERWKIMSGKEKSKFDEMAKADKVRYDQ 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|67484144|ref|XP_657292.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474548|gb|EAL51913.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 114
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN+PKRPP+ +F+++ E R KE HP+ + + K A E+WK++ E+EK + +A+
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDIR-FTEISKVASEQWKALGEEEKKEYQTKADA 84
Query: 97 RKSDYNKNMQDYN 109
K Y K+M+ YN
Sbjct: 85 AKEQYKKDMEKYN 97
>gi|351710199|gb|EHB13118.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 191
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G G K KDPN KRPPS FF+F EF + K +P
Sbjct: 64 AKADKVHYDREMKDYGPAKGS-----KKKKDPNATKRPPSGFFLFCSEFHPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
S+ V K GE W ++++ EK P++ +A K K Y K++
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDV 157
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P+ + A K E+WK++S EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPDVPVNFAEFSKKCSERWKTVSGKEKSKFDEMAKADKVHYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|334323271|ref|XP_003340370.1| PREDICTED: high mobility group protein B1-like [Monodelphis
domestica]
Length = 216
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP
Sbjct: 64 AKADKVHYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + D+K P+ ++A K Y K++ Y
Sbjct: 121 -SIGDVAKKLGEMWNNTAADDKQPYEKKAAILKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFQDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 65 KADKVHYEREMKTY 78
>gi|296200444|ref|XP_002747606.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 210
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K+ G+ K KDP+ PKRPPSAFF+F E+R + K HP
Sbjct: 64 AKADKVRYEREMKTYIPPKGETKKK---FKDPSAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
S+ V K GE W + + D+K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDVAKKLGEMWNNTAADDKQPYEKKASKLKEKYEKDIAAYQ 163
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|444730168|gb|ELW70558.1| High mobility group protein B3 [Tupaia chinensis]
Length = 369
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRP S FF+F EFR + K +P S+ V K G+ W ++S+ EK P++ +A
Sbjct: 89 DPNAPKRPLSGFFLFSSEFRPKIKSTNPGI-SIGDVAKKLGDMWNNLSDSEKQPYITKAA 147
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ +Y
Sbjct: 148 KLKEKYEKDVANY 160
>gi|326499588|dbj|BAJ86105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+KPK+P SA+F++ +E R K+V +GK GE+WK M+E +KAP+ E A
Sbjct: 330 DPSKPKQPMSAYFLYSQERRGAL---VAEKKTVPEIGKITGEEWKGMTEAQKAPYEEAAR 386
Query: 96 KRKSDYNKNMQDYNK 110
K+K Y K M+ YN+
Sbjct: 387 KQKEAYQKQMEVYNQ 401
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPN+PK+P S+F +F +E RKQ E P NN +T+ KWK +S EK + ++
Sbjct: 455 DPNRPKKPASSFLLFSKEARKQLAEERPGVNN---STLSALISVKWKDLSSAEKKVWSQK 511
Query: 94 AEKRKSDYNKNMQDYNK 110
A + + Y M +Y K
Sbjct: 512 AAQGMAAYKMEMDEYTK 528
>gi|67475910|ref|XP_653586.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56470556|gb|EAL48200.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449703217|gb|EMD43706.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica KU27]
Length = 111
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN+PKRPP+ +F+++ E R KE HP+ K V + K A E+WK++ E+EK + +A+
Sbjct: 23 PNRPKRPPTPYFLYLNEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEYQTKADA 81
Query: 97 RKSDYNKNMQDYN 109
K Y K+++ Y+
Sbjct: 82 AKEQYKKDIEKYD 94
>gi|444729655|gb|ELW70064.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 18 KSKGARAGKRTAKPKA-----AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVG 72
KS+ R K PK KDPN PKRPP AFF+F E+ + KE HP + S+ V
Sbjct: 68 KSRYEREMKTNIPPKGETEKKFKDPNVPKRPPLAFFLFCSEYHPKIKEEHP-DLSIGDVA 126
Query: 73 KAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
K GE W + + D+K P+ E+A K K Y K++ Y
Sbjct: 127 KILGEMWNNTAADDKQPY-EKAAKLKEKYEKDIAAY 161
>gi|335892928|gb|AEH59759.1| high mobility group box 1 [Lethenteron camtschaticum]
Length = 208
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V D ++K+ G+R ++ K KDPN PKRPPSAFF++ E+R + + +P
Sbjct: 64 AKVDKVRYDREMKTYVPPKGERGSRKK--KDPNAPKRPPSAFFIYCAEYRSKVRAENPGL 121
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ ++ K GE W + DEK+ + + K K Y+K+M Y
Sbjct: 122 -TIGSIAKKLGEMWNNAPADEKSIYERKTAKLKEKYDKDMASY 163
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
S++ F++ R++ K+ +P + + A K E+WK+MSE EK F + A+ K Y++
Sbjct: 14 SSYAYFVQTCREEHKKKNPEASVNFAEFSKKCSERWKTMSEKEKTRFEDMAKVDKVRYDR 73
Query: 104 NMQDY 108
M+ Y
Sbjct: 74 EMKTY 78
>gi|1419611|emb|CAA67363.1| HMG [Lampetra fluviatilis]
Length = 208
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V D ++K+ G+R ++ K KDPN PKRPPSAFF++ E+R + + +P
Sbjct: 64 AKVDKVRYDREMKTYVPPKGERGSRKK--KDPNAPKRPPSAFFIYCAEYRSKVRAENPGL 121
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ ++ K GE W + DEK+ + + K K Y+K+M Y
Sbjct: 122 -TIGSIAKKLGEMWNNAPADEKSIYERKTAKLKEKYDKDMASY 163
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
S++ F++ R++ K+ +P + + A K E+WK+MSE EK F + A+ K Y++
Sbjct: 14 SSYAYFVQTCREEHKKKNPEASVNFAEFSKKCSERWKTMSEKEKTRFEDMAKVDKVRYDR 73
Query: 104 NMQDY 108
M+ Y
Sbjct: 74 EMKTY 78
>gi|3551257|dbj|BAA32827.1| 98b [Daucus carota]
Length = 502
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
P KPK P SAFF+FM E R K+V VGK GE+WK+M+E EKAP+ E A+K
Sbjct: 287 PLKPKHPVSAFFLFMNERRADL---VAEKKNVLEVGKITGEEWKNMTEKEKAPYEEMAKK 343
Query: 97 RKSDYNKNMQDYNK 110
K+ Y + M+ Y K
Sbjct: 344 NKNQYLQQMEVYKK 357
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPKRP S+F +F +E RK E P NN +T+ KWK +S +EK + E+
Sbjct: 414 DPNKPKRPASSFLLFSKEARKTISEERPGINN---STLNALISVKWKEISHEEKQLWNEK 470
Query: 94 AEKRKSDYNKNMQDYNKQLA 113
A Y K M++YNK A
Sbjct: 471 AAGAMEAYKKEMEEYNKTTA 490
>gi|332847763|ref|XP_003315517.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan troglodytes]
gi|397485725|ref|XP_003813991.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 207
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++K G A+ GK+ KDPN PKRPPS FF+F EF + K +P
Sbjct: 64 AKADKVHYDQEIKDYGPAKGGKK-------KDPNAPKRPPSGFFLFCSEFCPKSKSTNPG 116
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
+ V K E WK++++ EK P++ +A K K Y K++
Sbjct: 117 I-PIGDVAKKLSEMWKNLNDSEKQPYITQAAKLKEKYEKDV 156
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS+ EK+ F E A+ K Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPVNFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 104 NMQDY 108
++DY
Sbjct: 74 EIKDY 78
>gi|291399740|ref|XP_002716281.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 243
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
+A K K Y K+ Y
Sbjct: 146 RKAAKLKGKYEKDTAAY 162
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
D KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DRKKPRGKMSSYAFFVQTCREEHKKRHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|222087985|gb|ACM41855.1| high mobility group box 2-like protein [Epinephelus coioides]
Length = 212
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFFVF E R + KE P S+ K GE W + S EKAP+ +A
Sbjct: 87 DPNAPKRPPSAFFVFCSEHRPRIKEECPGI-SIGDTAKKLGELWSTQSSKEKAPYEAKAA 145
Query: 96 KRKSDYNKNMQDYNKQLADG 115
K K Y K + Y + G
Sbjct: 146 KLKEKYEKEVAAYRAKGVSG 165
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
NKP+ S++ F+ + R++ K HP A K E+WK+MS EKA F E A+
Sbjct: 1 NKPRGKTSSYAFFIADCREEHKRKHPGTSVGFAEFSKKCSERWKTMSAKEKAKFEELAKT 60
Query: 97 RKSDYNKNMQDY 108
K Y++ M+ Y
Sbjct: 61 DKIRYDREMKTY 72
>gi|28279681|gb|AAH45917.1| High-mobility group box 1 [Danio rerio]
gi|182891806|gb|AAI65307.1| Hmgb1 protein [Danio rerio]
Length = 205
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F EFR + KE P S+ V K GE W +S +EK P+ ++A
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKEETPGL-SIGDVAKRLGEMWNKISSEEKQPYEKKA 147
Query: 95 EKRKSDYNKNMQDYNKQLADGVNAA 119
K K Y K++ Y + G AA
Sbjct: 148 AKLKEKYEKDIAAYRSKGKVGGGAA 172
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + K E+WK+MS EK F +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K+ Y + M++Y
Sbjct: 63 AKLDKARYEREMKNY 77
>gi|42476233|ref|NP_955849.2| high mobility group protein B1 [Danio rerio]
gi|37681827|gb|AAQ97791.1| high-mobility group box 1 [Danio rerio]
gi|45595607|gb|AAH67193.1| High-mobility group box 1 [Danio rerio]
Length = 205
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F EFR + KE P S+ V K GE W +S +EK P+ ++A
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKEETPGL-SIGDVAKRLGEMWNKISSEEKQPYEKKA 147
Query: 95 EKRKSDYNKNMQDYNKQLADGVNAA 119
K K Y K++ Y + G AA
Sbjct: 148 AKLKEKYEKDIAAYRSKGKVGGGAA 172
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + K E+WK+MS EK F +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K+ Y + M++Y
Sbjct: 63 AKLDKARYEREMKNY 77
>gi|229367676|gb|ACQ58818.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K K KDPN PKRPPSAFF+F +FR + K HP ++ K GE W S S + K P
Sbjct: 84 KKKRFKDPNAPKRPPSAFFLFCGDFRPKVKSEHPGL-TIGDTAKKLGEMWNSSSAENKQP 142
Query: 90 FVERAEKRKSDYNKNMQDY-NKQLADGVNAA 119
+ +A K K Y+K++ Y K D +AA
Sbjct: 143 YERKAAKLKEKYDKDIVAYRTKGTVDSASAA 173
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KPK S++ F++ R++ K+ HP + + A K E+WK+MS+ K F +
Sbjct: 3 KDPRKPKGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQKGKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDYN 109
A+ K Y ++M++Y+
Sbjct: 63 AKLDKVRYERDMKNYD 78
>gi|145541886|ref|XP_001456631.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424443|emb|CAK89234.1| unnamed protein product [Paramecium tetraurelia]
Length = 235
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K +DPN PK+P + FF+F +++R++ + +P K + + + AG KW SMSE EK P+V
Sbjct: 43 KKERDPNAPKKPLTPFFLFNQKYREKVVDRNPEIK-LTQISQMAGNKWSSMSEQEKKPYV 101
Query: 92 ERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEEEDDD 147
++ K Y + ++DYN++ N E N+ + KSE D+ + + + DD
Sbjct: 102 DQYNAAKEKYEQELKDYNEK-----NGIETNDKKRKKSEKVDDKSMKSALDHNIDD 152
>gi|49258306|pdb|1J3C|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 79
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ K GE W S +K P+ ++A
Sbjct: 4 KDPNAPKRPPSAFFLFCSEYRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKA 62
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 63 AKLKEKYEKDIAAY 76
>gi|229365968|gb|ACQ57964.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K K KDPN PKRPPSAFF+F +FR + K HP ++ K GE W S S + K P
Sbjct: 84 KKKRFKDPNAPKRPPSAFFLFCGDFRPKVKSEHPGL-TIGDTAKKLGEMWNSSSAENKQP 142
Query: 90 FVERAEKRKSDYNKNMQDY-NKQLADGVNAA 119
+ +A K K Y+K++ Y K D +AA
Sbjct: 143 YERKAAKLKEKYDKDIVAYRTKGTVDSASAA 173
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KPK S++ F++ R++ K+ HP + + A K E+WK+MS+ EK F +
Sbjct: 3 KDPRKPKGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDYN 109
A+ K Y ++M++Y+
Sbjct: 63 AKLDKVRYERDMKNYD 78
>gi|355563197|gb|EHH19759.1| hypothetical protein EGK_02478, partial [Macaca mulatta]
Length = 121
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D++ K G A+ GK DPN PKRP S FF+F EF + K +P
Sbjct: 2 AKADKVHNDTERKDYGPAKGGKNN-------DPNAPKRPLSGFFLFCSEFHPKMKSTNP- 53
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE WK++++ EK P+V + K Y K++ DY
Sbjct: 54 GISIGDVAKKLGEMWKNLNDSEKQPYVTKVAKLMK-YEKDVADY 96
>gi|402882719|ref|XP_003904882.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Papio anubis]
Length = 132
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D++ K G A+ GK+ DPN PKRP S FF+F EF + K +P
Sbjct: 2 AKADKVHNDTERKDYGPAKGGKKN-------DPNAPKRPLSGFFLFCSEFHPKMKSTNPG 54
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE WK++++ EK P+V + K Y K++ DY
Sbjct: 55 I-SIGDVAKKLGEMWKNLNDSEKQPYVTKVAKLMK-YEKDVADY 96
>gi|414585863|tpg|DAA36434.1| TPA: hypothetical protein ZEAMMB73_396569 [Zea mays]
Length = 119
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KR + FF F+ EFR Q+ E HP K V V KAAGEKW+SMS++EKA + ++
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGGSKKQDGKA 79
Query: 101 YNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSG 141
K K AD E S+KSKSEV D D+++G G
Sbjct: 80 SKKENTSSKKAKADVREGDEAEGSNKSKSEVED-DEQDGRG 119
>gi|444510285|gb|ELV09567.1| High mobility group protein B3 [Tupaia chinensis]
Length = 197
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKRPPS FF+F EFR + K +P
Sbjct: 52 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 106
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
S+ V K GE W ++S+ EK P++ +A K K
Sbjct: 107 -SIGDVAKKLGEMWNNLSDSEKQPYITKAAKLK 138
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 2 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 61
Query: 104 NMQDY 108
M+DY
Sbjct: 62 EMKDY 66
>gi|444729656|gb|ELW70065.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 18 KSKGARAGKRTAKPKA-----AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVG 72
KS+ R K PK KDPN PKRPP AFF+F E+ + KE HP+ S+ V
Sbjct: 68 KSRYEREMKTNIPPKGETEKKFKDPNVPKRPPLAFFLFCSEYHPKIKEEHPDL-SIGDVA 126
Query: 73 KAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
K GE W + + D+K P+ E+A K K Y K++ Y
Sbjct: 127 KKLGEMWNNTAADDKQPY-EKAAKLKEKYEKDIAAY 161
>gi|392876654|gb|AFM87159.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPS FF+F R + +E P S+ + K GEKW +M +EK P+ ++A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPF 90
K A+DP KP+ +++ +F++ R++ K+ HP S K E WK+MS EK+ F
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSEGWKTMSAKEKSKF 75
Query: 91 VERAEKRKSDYNKNMQDY 108
E +++ K Y M+DY
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|444518140|gb|ELV11977.1| High mobility group protein B3 [Tupaia chinensis]
Length = 198
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G G K KDPN PKR PS FF+F EFR + K +P
Sbjct: 64 AKADKVRYDREMKDYGPAKGGEEEK---GKDPNAPKRRPSVFFLFCSEFRLKIKSTNPGI 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107
S+ V K G+ W ++S+ EK P++ +A K K Y K++ D
Sbjct: 121 -SIGDVAKKLGDVWNNLSDSEKQPYITKAAKLKK-YEKDVAD 160
>gi|90103305|gb|ABD85497.1| high mobility group box 1-like [Ictalurus punctatus]
Length = 182
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R K K KDPN PKRPPSAFF+F E+R + KE P S+ V K GE W S +E
Sbjct: 62 RGEKKKRFKDPNAPKRPPSAFFIFCAEYRPKVKEETPGL-SIGDVAKKLGEMWNKTSAEE 120
Query: 87 KAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 127
K P+ ++A K K Y K++ Y K G A + DK+
Sbjct: 121 KQPYEKKAAKLKEKYEKDIAAYRKGKVVGGAAKAPTKPDKA 161
>gi|392879586|gb|AFM88625.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPS FF+F R + +E P S+ + K GEKW +M +EK P+ ++A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPF 90
K A+DP KP+ +++ +F++ R++ K+ HP S K E+WK+MS EK+ F
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 91 VERAEKRKSDYNKNMQDY 108
E +++ K Y M+DY
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|344252855|gb|EGW08959.1| TRAF family member-associated NF-kappa-B activator [Cricetulus
griseus]
Length = 427
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R +FK HP S+ V K GE W + + D+K P+
Sbjct: 300 KKFKDPNAPKRPPSAFFLFCSEYRPKFKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 358
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K + K++ Y
Sbjct: 359 KKAAKLKEKHEKDIAAY 375
>gi|413943061|gb|AFW75710.1| hypothetical protein ZEAMMB73_996127 [Zea mays]
Length = 95
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 11 VGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT 70
+G +KSKGA + K KA KDPNKPKR P+AFFV M EFRK+FKE +P KSVA
Sbjct: 17 LGGGLAVKSKGAEKPTKGRKAKAGKDPNKPKRAPNAFFVLMGEFRKEFKEKNPKIKSVAA 76
Query: 71 VGKAAGEKWKSMSEDEKAP 89
V + WKS + P
Sbjct: 77 V-ELNFPGWKSCRRQVEIP 94
>gi|118343940|ref|NP_001071792.1| transcription factor protein [Ciona intestinalis]
gi|70570753|dbj|BAE06615.1| transcription factor protein [Ciona intestinalis]
Length = 310
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPF 90
K +DPN+PKRPPSA+F+F+ +FRK + P A + K AGE W S+S+ EK P+
Sbjct: 122 KKPRDPNRPKRPPSAYFLFLADFRKNY----PGKSDPAKEITKKAGEAWNSLSDAEKTPY 177
Query: 91 VERAEKRKSDYNKNMQDYNKQLADG-VNAAEENESDKSKSEVNDE 134
A+ ++ + ++++ Y + + G ++ A +SD E+ E
Sbjct: 178 YRSAQLVRAKWEQDLEAYKQSVKCGTLSRASSIQSDHDPVEMVGE 222
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KRP +A+ F+ ++R+ KEA + +A EKW++M+E+EK PF+E + + +
Sbjct: 54 KRPTTAYLYFVSKYRETLKEAGEVVPKAKIITQACAEKWRNMNEEEKEPFLELSRRDRER 113
Query: 101 YNKN 104
+ K+
Sbjct: 114 WQKD 117
>gi|158297853|ref|XP_318023.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|158297857|ref|XP_001689081.1| AGAP004789-PA [Anopheles gambiae str. PEST]
gi|157014526|gb|EAA13138.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|157014528|gb|EDO63498.1| AGAP004789-PA [Anopheles gambiae str. PEST]
Length = 324
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 19 SKGARAGKRTAK---PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAA 75
+KG ++ +T K KA KD N PK P + + +M E R+ ++ HPN + V K
Sbjct: 50 TKGKQSAPKTTKKKRQKAPKDANAPKHPLTGYVRYMNEHREGVRQKHPNLTPIE-VTKIM 108
Query: 76 GEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNA-AEENESDKSKSEV 131
E+W +SE+ K P++E AE K YNK + +Y +L + A A +NES +K EV
Sbjct: 109 AEEWSKLSEERKKPYLEAAEVDKERYNKEISEY--KLNNEAKAKALQNESQVAKKEV 163
>gi|387914724|gb|AFK10971.1| high mobility group box 1 [Callorhinchus milii]
Length = 226
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPS FF+F R + +E P S+ + K GEKW +M +EK P+ ++A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPF 90
K A+DP KP+ ++ +F++ R++ K+ HP S K E+WK+MS EK+ F
Sbjct: 16 KMARDPKKPRGRLTSHALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 91 VERAEKRKSDYNKNMQDY 108
E +++ K Y M+DY
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|224072172|ref|XP_002303636.1| high mobility group family [Populus trichocarpa]
gi|222841068|gb|EEE78615.1| high mobility group family [Populus trichocarpa]
Length = 480
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K K KDP KPK+P SAFF+F E R NKSV V K AGE+WK+M+E + P
Sbjct: 263 KTKKEKDPLKPKQPLSAFFLFCNERRAAL---LAENKSVLEVAKIAGEEWKNMTEKRRGP 319
Query: 90 FVERAEKRKSDYNKNMQDY 108
+ E A+K + Y + M+ Y
Sbjct: 320 YEEVAKKNREKYMQEMEAY 338
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S+F +F +E RK + P NN +T+ KWK ++E+E+ + +
Sbjct: 394 DPNKPKKPASSFLLFSKETRKSLMDERPGINN---STLTAMISVKWKELNEEERQIWNSK 450
Query: 94 AEKRKSDYNKNMQDYNKQLA 113
A + Y K +++Y+K LA
Sbjct: 451 AAEAMEAYKKELEEYSKSLA 470
>gi|392876858|gb|AFM87261.1| high mobility group protein [Callorhinchus milii]
gi|392878442|gb|AFM88053.1| high mobility group protein [Callorhinchus milii]
gi|392880194|gb|AFM88929.1| high mobility group protein [Callorhinchus milii]
gi|392881188|gb|AFM89426.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPS FF+F R + +E P S+ + K GEKW +M +EK P+ ++A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPF 90
K A+DP KP+ +++ +F++ R++ K+ HP S K E+WK+MS EK+ F
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 91 VERAEKRKSDYNKNMQDY 108
E +++ K Y M+DY
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|118344422|ref|NP_001072036.1| transcription factor protein [Ciona intestinalis]
gi|70570508|dbj|BAE06614.1| transcription factor protein [Ciona intestinalis]
Length = 447
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPF 90
K +DPN+PKRPPSA+F+F+ +FRK + P A + K AGE W S+S+ EK P+
Sbjct: 259 KKPRDPNRPKRPPSAYFLFLADFRKNY----PGKSDPAKEITKKAGEAWNSLSDAEKTPY 314
Query: 91 VERAEKRKSDYNKNMQDYNKQLADG-VNAAEENESDKSKSEVNDE 134
A+ ++ + ++++ Y + + G ++ A +SD E+ E
Sbjct: 315 YRSAQLVRAKWEQDLEAYKQSVKCGTLSRASSIQSDHDPVEMVGE 359
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KRP +A+ F+ ++R+ KEA + +A EKW++M+E+EK PF+E + + +
Sbjct: 191 KRPTTAYLYFVSKYRETLKEAGEVVPKAKIITQACAEKWRNMNEEEKEPFLELSRRDRER 250
Query: 101 YNKN 104
+ K+
Sbjct: 251 WQKD 254
>gi|392884154|gb|AFM90909.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPS FF+F R + +E P S+ + K GEKW +M +EK P+ ++A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPF 90
K A+DP KP+ +++ +F++ R++ K+ HP S K E+W++MS EK+ F
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWETMSAKEKSKF 75
Query: 91 VERAEKRKSDYNKNMQDY 108
E +++ K Y M+DY
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|392878936|gb|AFM88300.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPS FF+F R + +E P S+ + K GEKW +M +EK P+ ++A+
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 166 KLKEKYKKDVAAY 178
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPF 90
K A+DP KP+ +++ +F++ R++ K+ HP S K E+WK+MS EK+ F
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMSAKEKSKF 75
Query: 91 VERAEKRKSDYNKNMQDY 108
E +++ K Y M+DY
Sbjct: 76 EELSKEDKKRYESEMKDY 93
>gi|300677966|gb|ADK27290.1| high-mobility-group B1a [Gekko japonicus]
Length = 215
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F EFR + K HP S+ V K GE W + + D+K PF
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAGDDKQPFE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F E A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEEMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M++Y
Sbjct: 65 KGDKVRYEREMKNY 78
>gi|334348387|ref|XP_003342057.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Monodelphis domestica]
Length = 208
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD + D ++K G G KD N PK PPS FF+F EFR + K +P
Sbjct: 64 AKADKLRYDREMKDYGPAKGGV-----GGKDSNAPKHPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107
S+ V K GE W ++S++EK P+ +A K K Y K++ D
Sbjct: 119 -SIGDVAKKLGEMWNNLSDNEKQPYNNKAAKLKEKYEKDVAD 159
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ ++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYAFLVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKLRYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|395850201|ref|XP_003797684.1| PREDICTED: high mobility group protein B1 [Otolemur garnettii]
Length = 289
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|609551|gb|AAA58771.1| HMG-1 [Oncorhynchus mykiss]
Length = 204
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + +++S G+ K K KDPN PKRP SAFF+F +FR Q K P
Sbjct: 63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GEKW +++ ++K P+ ++A K K Y K++ Y
Sbjct: 120 -SIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDITAY 161
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+WK+MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|327268628|ref|XP_003219098.1| PREDICTED: high mobility group protein B2-like [Anolis
carolinensis]
Length = 209
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E R + K HP S+ K GE W + +K PF ++A
Sbjct: 88 KDPNAPKRPPSAFFLFCSEHRPKIKSDHPGL-SIGDTAKKLGEMWSLQTAKDKLPFEQKA 146
Query: 95 EKRKSDYNKNMQDY 108
K K Y+K++ Y
Sbjct: 147 LKLKEKYDKDIAAY 160
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+W++MS EK F + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWRTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KGDKARYDREMKNY 78
>gi|1085210|pir||S48708 high-mobility-group-1 protein - trout
Length = 204
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + +++S G+ K K KDPN PKRP SAFF+F +FR Q K P
Sbjct: 63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GEKW +++ ++K P+ ++A K K Y K++ Y
Sbjct: 120 -SIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDITAY 161
Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R + K+ HP + + + K E+WK+MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRIEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|409075359|gb|EKM75740.1| hypothetical protein AGABI1DRAFT_116212 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198009|gb|EKV47935.1| hypothetical protein AGABI2DRAFT_191645 [Agaricus bisporus var.
bisporus H97]
Length = 262
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
KR AKPK DPN PKRP S++ +F E RKQ K+ HP + A + + WK MSED
Sbjct: 70 KRNAKPK---DPNAPKRPASSYILFQNEIRKQLKDQHPELTN-AELLNMISDIWKKMSED 125
Query: 86 EKAPFVERAEKRKSDYNKNMQDYNKQLADGV 116
EKA + + E K Y+++ + Y+ + + V
Sbjct: 126 EKATYHKLVEDAKERYSQDKKAYDSRTPEEV 156
>gi|443724197|gb|ELU12309.1| hypothetical protein CAPTEDRAFT_56147, partial [Capitella teleta]
Length = 196
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
+D N+PKRP SA+F+++ FR + K+ P NK + +AAGE WK ++E EKAP+ +
Sbjct: 93 GRDKNRPKRPQSAYFLWLAGFRTRMKDKIPVNKELL---RAAGEHWKRLTEVEKAPYEQM 149
Query: 94 AEKRKSDYNKNMQDYN 109
AE + Y + M+ YN
Sbjct: 150 AEGERRKYEEAMRQYN 165
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 18 KSKGA--RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAA 75
+ KGA + GKR K KDPN+PKRP SA+F ++ R + ++ VA K
Sbjct: 3 RPKGATTKGGKR----KKNKDPNRPKRPTSAYFFYVAHCRAECEKRGERITRVAQWTKEI 58
Query: 76 GEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
+ W+ M+ +++ F +A K+ Y + M Y
Sbjct: 59 SQVWREMTPEDRKGFDAKAVVDKARYEEQMNRY 91
>gi|221219844|gb|ACM08583.1| High mobility group protein B2 [Salmo salar]
Length = 211
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFFVF EFR K+ P S+ K G W + +K PF E+A
Sbjct: 92 KDPNAPKRPPSAFFVFSAEFRPTVKQEFPGC-SIGQCAKKLGIMWGQQTPTQKQPFEEKA 150
Query: 95 EKRKSDYNKNMQDY 108
+ + Y+K+M Y
Sbjct: 151 LRLREKYDKDMAAY 164
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP-NNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
D NKPK SA+ F++ R++ K HP + + A K E+W++ + ++ F + A
Sbjct: 5 DVNKPKGKTSAYAFFVQTCREEHKRKHPEQSVNFAEFSKQCSERWRASTATDRRRFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y ++M+ Y
Sbjct: 65 KNDKVRYERDMRGY 78
>gi|397524101|ref|XP_003832048.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 130
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++ G A+ GK DPN PKRP S FF+F EF + K +P
Sbjct: 2 AKADKVHCDREMNDYGPAKGGKN--------DPNAPKRPLSGFFLFCSEFCPKIKSTNP- 52
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P+V + K K Y K++ DY
Sbjct: 53 GISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLKK-YEKDVADY 95
>gi|167384542|ref|XP_001736998.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900416|gb|EDR26737.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 112
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN+PKRP + +F+++ E R KE HP+ K V + K A E+WK++ E+EK + +A+
Sbjct: 23 PNRPKRPQTPYFLYLHEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEYQAKADA 81
Query: 97 RKSDYNKNMQDYN 109
K Y K+M+ Y
Sbjct: 82 AKEQYKKDMEKYT 94
>gi|224043266|ref|XP_002194652.1| PREDICTED: high mobility group protein B1 [Taeniopygia guttata]
Length = 215
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F EFR + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y K M++Y
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|440298682|gb|ELP91313.1| hypothetical protein EIN_153200 [Entamoeba invadens IP1]
Length = 185
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPK+P +A+ +++ E R + KE P+ K V V K AGE WK+M E++K P+ ++A+
Sbjct: 96 DPNKPKKPQTAYMLYLNEHRAEIKEKFPDMK-VTEVAKKAGENWKAMGEEDKKPYQDKAD 154
Query: 96 KRKSDYNKNMQDY 108
K K + M+ Y
Sbjct: 155 KAKETWKTEMKKY 167
>gi|168021929|ref|XP_001763493.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685286|gb|EDQ71682.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 483
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP +PK P SAFF F + R E NK V + K GE+WKSMS ++APF E A
Sbjct: 259 DPLRPKHPISAFFAFSQSRRPALLE---ENKPVTEIAKILGEEWKSMSPSKRAPFEEIAA 315
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSE 130
K K Y+ ++ Y K A+ ++ + +KSK E
Sbjct: 316 KEKERYSVELETYKKNKAEDLSTLDREAEEKSKLE 350
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
K+P +AF ++ +++R++ E +PN + A + G+KWK++ E+E+ P+ +R + K+
Sbjct: 145 KKPKTAFLLWCKDYRQKVCEENPNA-TFAEISTILGDKWKNVPEEERKPYEDRYKVEKNV 203
Query: 101 YNK 103
Y K
Sbjct: 204 YLK 206
>gi|5815432|gb|AAD52670.1|AF178849_1 high mobility group protein HMG1 [Gallus gallus]
Length = 214
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F EFR + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y K M++Y
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|380083124|gb|AFD33645.1| high mobility group box 1, partial [Gallus gallus]
Length = 185
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F EFR + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y K M++Y
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|213515010|ref|NP_001133971.1| High mobility group protein B3 [Salmo salar]
gi|209156012|gb|ACI34238.1| High mobility group protein B3 [Salmo salar]
gi|223648118|gb|ACN10817.1| High mobility group protein B3 [Salmo salar]
Length = 206
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRP S FF+F + R + K HP + + V K GE+W ++++ K P++ +A
Sbjct: 88 KDPNAPKRPSSGFFIFCADHRPKIKAQHP-SLGIGDVAKKLGEQWNNLTDATKQPYLIKA 146
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ DY
Sbjct: 147 NKLKDKYQKDVADY 160
>gi|45382473|ref|NP_990233.1| high mobility group protein B1 [Gallus gallus]
gi|326914268|ref|XP_003203448.1| PREDICTED: high mobility group protein B1-like [Meleagris
gallopavo]
gi|4140289|emb|CAA76978.1| high mobility group 1 protein [Gallus gallus]
gi|60098903|emb|CAH65282.1| hypothetical protein RCJMB04_15a21 [Gallus gallus]
Length = 215
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F EFR + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y K M++Y
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|444732714|gb|ELW72989.1| Enkurin [Tupaia chinensis]
Length = 362
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K +KDPN PKRPPSAFF+F E+R + K HP S+ K GE W + + DEK P+
Sbjct: 87 KKSKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDAAKKLGEMWNNTAADEKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
>gi|426397135|ref|XP_004064781.1| PREDICTED: high mobility group protein B3-like [Gorilla gorilla
gorilla]
Length = 221
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V D ++K G G + KDPN KRP S FF+F EFR + K +P
Sbjct: 84 AKVDKVHYDQEMKDNGPVEGGKK------KDPNALKRPLSGFFLFCSEFRPKIKSTNPGI 137
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ + K GE W + S+ EK P++ +A K Y K++ DY
Sbjct: 138 -SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADY 179
>gi|225704132|gb|ACO07912.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F +FR + K HP S+ K G W S + +EK P+ ++A
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 95 EKRKSDYNKNMQDY 108
K Y+K++ Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R + K+ HP + + A K E+WK MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A++ K Y M++Y
Sbjct: 63 AKQDKVRYEGEMKNY 77
>gi|148673204|gb|EDL05151.1| mCG5336 [Mus musculus]
Length = 216
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + +K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAVYDKQPYG 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|213405987|ref|XP_002173765.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
gi|212001812|gb|EEB07472.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
Length = 316
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRK--QFKE--AHPNNKSVATVGK 73
K + A+ K+ +KP KDP++PK+P S+F F ++ R+ +FK+ P S+ K
Sbjct: 137 KERRAKGIKKNSKP--IKDPSEPKKPLSSFLYFTQKLRQDPEFKQKLMGPAVYSITEFSK 194
Query: 74 AAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVND 133
AGE WKS+S+D KAPF+E A R++ Y + + + K G++ + + +K ++++
Sbjct: 195 KAGEVWKSLSDDIKAPFIEDAATRRAQYKEEYEKWRKD--TGIDQIDLRDIEKKIKKIHE 252
Query: 134 E 134
E
Sbjct: 253 E 253
>gi|344245608|gb|EGW01712.1| High mobility group protein B1 [Cricetulus griseus]
Length = 162
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+ + K P S+ K GE W S + ++K P+ +A
Sbjct: 39 KDPNAPKRPPSAFFLFCSEYHPKIKGERPGL-SIGDAAKKLGETWNSTAAEDKQPYETKA 97
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ DY
Sbjct: 98 AKLKEQYEKDIADY 111
>gi|432951224|ref|XP_004084757.1| PREDICTED: high mobility group protein B2-like [Oryzias latipes]
Length = 221
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFFVF + R + KE +P S+ + K GE W + S +KAP+ +A
Sbjct: 114 DPNAPKRPPSAFFVFCSDHRPKIKEDNPGI-SIGDIAKKLGELWATQSAKDKAPYEAKAA 172
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 173 KLKEKYEKDVAAY 185
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHP-NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDPNKP+ SA+ F+ R++ K+ HP + + A K E+WK+MS EK F E
Sbjct: 26 KDPNKPRGKTSAYAYFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMSSKEKVKFDEL 85
Query: 94 AEKRKSDYNKNMQDY 108
A+ K+ Y++ M+ Y
Sbjct: 86 AKTDKARYDREMKTY 100
>gi|185135647|ref|NP_001118186.1| high mobility group-T protein [Oncorhynchus mykiss]
gi|123382|sp|P07746.2|HMGT_ONCMY RecName: Full=High mobility group-T protein; Short=HMG-T; AltName:
Full=HMG-T1; Short=HMG-1
gi|64328|emb|CAA26500.1| unnamed protein product [Oncorhynchus mykiss]
Length = 204
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + +++S G+ K K KDPN PKRP SAFF+F +FR Q K P
Sbjct: 63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GEKW +++ ++K P+ ++A + K Y K++ Y
Sbjct: 120 -SIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAY 161
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+WK+MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|225703866|gb|ACO07779.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F +FR + K HP S+ K G W S + +EK P+ ++A
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 95 EKRKSDYNKNMQDY 108
K Y+K++ Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R + K+ HP + + A K E+WK MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A++ K Y + M++Y
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|221221922|gb|ACM09622.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F +FR + K HP S+ K G W S + +EK P+ ++A
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 95 EKRKSDYNKNMQDY 108
K Y+K++ Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R + K+ HP + + A K E+WK MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A++ K Y + M++Y
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|109490746|ref|XP_001074778.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392351213|ref|XP_003750876.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 211
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PK PPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ + A
Sbjct: 90 KDPNAPKTPPSAFFLFCSEYRPKIKGEHPGL-SIGDVVKKLGEMWTNTAADDKQPYEKMA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|397475678|ref|XP_003809257.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
Length = 165
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ PKRPPS FF+F E R + K +P SV V K GE W ++++ EK P++ +A
Sbjct: 66 DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI-SVGDVAKKLGEMWNNLNDSEKQPYITKAA 124
Query: 96 KRKSDYNKNMQD 107
K K Y K++ D
Sbjct: 125 KLKEKYEKDVAD 136
>gi|296470699|tpg|DAA12814.1| TPA: high mobility group box 3-like [Bos taurus]
Length = 197
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K G+ G + KDPN PKRPPS FF+F EF + K +P
Sbjct: 63 AKADKVHYNQEMKDYGSAKGGK-------KDPNAPKRPPSGFFLFFSEFCSEIKSTNPGI 115
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ +K +V + K K Y K++ DY
Sbjct: 116 -SIGDVAKKLGEMWNNLSDSKKQLYVNKDAKLKK-YEKDVADY 156
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK SA F++ RK+ K+ + A K E+WK+MS EK+ F E A+
Sbjct: 5 DPEKPKGKMSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAK 64
Query: 96 KRKSDYNKNMQDY 108
K YN+ M+DY
Sbjct: 65 ADKVHYNQEMKDY 77
>gi|49258307|pdb|1J3D|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 78
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A
Sbjct: 3 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKA 61
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 62 AKLKEKYEKDIAAY 75
>gi|440912073|gb|ELR61675.1| Putative high mobility group protein B3-like protein, partial [Bos
grunniens mutus]
Length = 190
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V + ++K G A+ GK+ KDPN PKRPPS FF+F EF + K +P
Sbjct: 63 AKADKVHYNQEMKDYGSAKGGKK-------KDPNAPKRPPSGFFLFFSEFCSKIKSTNPG 115
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ +K ++ + K K Y K++ DY
Sbjct: 116 I-SIGDVAKKLGEMWNNLSDSKKQLYINKDAKLKK-YEKDVADY 157
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK SA F++ RK+ K+ + A K E+WK+MS EK+ F E A+
Sbjct: 5 DPEKPKGKMSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAK 64
Query: 96 KRKSDYNKNMQDY 108
K YN+ M+DY
Sbjct: 65 ADKVHYNQEMKDY 77
>gi|148707462|gb|EDL39409.1| mCG8212 [Mus musculus]
Length = 145
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 10/105 (9%)
Query: 6 SKADAVGTDSKLK-SKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++K + A+ GK+ KDPN PKRPPS FF+F EF + K +P
Sbjct: 13 AKADKVCYDWEMKDYRPAKGGKK-------KDPNAPKRPPSGFFLFCSEFHPKIKFTNPG 65
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
S+ V K GE WK++S+ E A +V +A K K K + D+
Sbjct: 66 I-SIGDVAKKLGEMWKNLSDSE-AAYVTKAAKLKEKDEKGVSDWQ 108
>gi|391638|dbj|BAA03261.1| ORF1 [Gallus gallus]
Length = 298
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK+MS++
Sbjct: 120 KKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSKE 178
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE K DY K M++Y+
Sbjct: 179 KKEEWDRKAEDAKRDYEKAMKEYS 202
>gi|193787044|dbj|BAG51867.1| unnamed protein product [Homo sapiens]
Length = 176
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 51 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 109
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 110 AKLKEKYEKDIAAY 123
>gi|148682766|gb|EDL14713.1| mCG116825 [Mus musculus]
Length = 162
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 41 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 99
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 100 AKLKEKYEKDIAAY 113
>gi|221221482|gb|ACM09402.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K K KDPN PKRP SAFF+F +FR Q K P S+ V K GEKW +++ ++K P
Sbjct: 84 KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVP 142
Query: 90 FVERAEKRKSDYNKNMQDY 108
+ ++A + K Y K++ Y
Sbjct: 143 YEKKAARLKEKYEKDITAY 161
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+W++MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 63 AKLDKMRYEREMRSY 77
>gi|426236471|ref|XP_004012192.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 213
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGNVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|149635755|ref|XP_001508702.1| PREDICTED: high mobility group protein B1-like [Ornithorhynchus
anatinus]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP
Sbjct: 64 AKADKVRYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + D+K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDAAVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|126327421|ref|XP_001367294.1| PREDICTED: high mobility group protein B1-like isoform 2
[Monodelphis domestica]
Length = 216
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP
Sbjct: 64 AKADKVRYEREMKTYIPPKGETK---KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + D+K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 65 KADKVRYEREMKTY 78
>gi|148673911|gb|EDL05858.1| mCG144566 [Mus musculus]
Length = 240
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 115 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 173
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 174 AKLKEKYEKDIAAY 187
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 30 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 89
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 90 KADKARYEREMKTY 103
>gi|351698285|gb|EHB01204.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDITAY 162
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ + K+ HP+ + + + K E+WK++S +EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCGEDHKKKHPDASVNFSEFSKKGSERWKTISAEEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|148709727|gb|EDL41673.1| mCG9102 [Mus musculus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|109098276|ref|XP_001102554.1| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMS 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|432102789|gb|ELK30264.1| High mobility group protein B1 [Myotis davidii]
Length = 245
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444731734|gb|ELW72082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP + V K GE W + + DEK P+ ++A
Sbjct: 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-PIGDVAKKLGEMWINTAADEKQPYEKKA 142
Query: 95 EKRKSDYNKNMQDYN 109
K K Y K++ Y
Sbjct: 143 AKLKEKYEKDIAAYQ 157
>gi|301757910|ref|XP_002914802.1| PREDICTED: high mobility group protein B1-like [Ailuropoda
melanoleuca]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|26350077|dbj|BAC38678.1| unnamed protein product [Mus musculus]
Length = 181
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|74138677|dbj|BAE27155.1| unnamed protein product [Mus musculus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGKHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|145540136|ref|XP_001455758.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423566|emb|CAK88361.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--------VATVGKAAGEKWKSMS 83
K +DPN PKRP + FF+F +++R + E +P + + + AG+KW SMS
Sbjct: 25 KKERDPNAPKRPLTPFFLFSQKYRDKVLERNPGIDQRDYSLEVKLTQISQMAGQKWNSMS 84
Query: 84 EDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSE 130
E+EK P+V++ + K+ Y+ +++ YN + G+N NE + KSE
Sbjct: 85 EEEKQPYVDQYNEAKNKYDGDLKVYNDK--HGLNT---NEKKRKKSE 126
>gi|395520861|ref|XP_003764541.1| PREDICTED: high mobility group protein B1 [Sarcophilus harrisii]
Length = 230
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP
Sbjct: 78 AKADKVRYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 134
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + D+K P+ ++A K K Y K++ Y
Sbjct: 135 -SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 176
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 19 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 78
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 79 KADKVRYEREMKTY 92
>gi|431920962|gb|ELK18731.1| High mobility group protein B1 [Pteropus alecto]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|55639639|ref|XP_509611.1| PREDICTED: high mobility group protein B1 isoform 15 [Pan
troglodytes]
gi|114649261|ref|XP_001140156.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan
troglodytes]
gi|114649265|ref|XP_001140328.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan
troglodytes]
gi|114649269|ref|XP_001140491.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan
troglodytes]
gi|332841128|ref|XP_003314147.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|332841133|ref|XP_003314149.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|397513185|ref|XP_003826902.1| PREDICTED: high mobility group protein B1 isoform 1 [Pan paniscus]
gi|397513187|ref|XP_003826903.1| PREDICTED: high mobility group protein B1 isoform 2 [Pan paniscus]
gi|397513189|ref|XP_003826904.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan paniscus]
gi|397513191|ref|XP_003826905.1| PREDICTED: high mobility group protein B1 isoform 4 [Pan paniscus]
gi|397513193|ref|XP_003826906.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan paniscus]
gi|397513195|ref|XP_003826907.1| PREDICTED: high mobility group protein B1 isoform 6 [Pan paniscus]
gi|397513197|ref|XP_003826908.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan paniscus]
gi|410047671|ref|XP_003952424.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047673|ref|XP_003952425.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047675|ref|XP_003952426.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047677|ref|XP_003952427.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047679|ref|XP_003952428.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047682|ref|XP_003952429.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047686|ref|XP_003952430.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047688|ref|XP_003952431.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|3342575|gb|AAC27652.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R+ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREGHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|48145843|emb|CAG33144.1| HMGB1 [Homo sapiens]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|620098|emb|CAA56631.1| high mobility group protein [Mus musculus]
gi|71681313|gb|AAI00313.1| High mobility group box 1 [Mus musculus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|4504425|ref|NP_002119.1| high mobility group protein B1 [Homo sapiens]
gi|50950133|ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris]
gi|126352708|ref|NP_001075304.1| high mobility group protein B1 [Equus caballus]
gi|281182655|ref|NP_001162380.1| high mobility group protein B1 [Papio anubis]
gi|284005385|ref|NP_001164752.1| high mobility group protein B1 [Oryctolagus cuniculus]
gi|388453289|ref|NP_001252735.1| high mobility group protein B1 [Macaca mulatta]
gi|291397530|ref|XP_002715999.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|291399645|ref|XP_002716268.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|296203653|ref|XP_002748994.1| PREDICTED: high mobility group protein B1 isoform 2 [Callithrix
jacchus]
gi|297714815|ref|XP_002833818.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
gi|332242218|ref|XP_003270282.1| PREDICTED: high mobility group protein B1-like isoform 1 [Nomascus
leucogenys]
gi|332242222|ref|XP_003270284.1| PREDICTED: high mobility group protein B1-like isoform 3 [Nomascus
leucogenys]
gi|332242226|ref|XP_003270286.1| PREDICTED: high mobility group protein B1-like isoform 5 [Nomascus
leucogenys]
gi|332242228|ref|XP_003270287.1| PREDICTED: high mobility group protein B1-like isoform 6 [Nomascus
leucogenys]
gi|332242230|ref|XP_003270288.1| PREDICTED: high mobility group protein B1-like isoform 7 [Nomascus
leucogenys]
gi|332242232|ref|XP_003270289.1| PREDICTED: high mobility group protein B1-like isoform 8 [Nomascus
leucogenys]
gi|344284506|ref|XP_003414007.1| PREDICTED: high mobility group protein B1-like [Loxodonta africana]
gi|348583405|ref|XP_003477463.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
gi|426375079|ref|XP_004054375.1| PREDICTED: high mobility group protein B1-like isoform 1 [Gorilla
gorilla gorilla]
gi|426375081|ref|XP_004054376.1| PREDICTED: high mobility group protein B1-like isoform 2 [Gorilla
gorilla gorilla]
gi|426375083|ref|XP_004054377.1| PREDICTED: high mobility group protein B1-like isoform 3 [Gorilla
gorilla gorilla]
gi|426375085|ref|XP_004054378.1| PREDICTED: high mobility group protein B1-like isoform 4 [Gorilla
gorilla gorilla]
gi|426375087|ref|XP_004054379.1| PREDICTED: high mobility group protein B1-like isoform 5 [Gorilla
gorilla gorilla]
gi|426375089|ref|XP_004054380.1| PREDICTED: high mobility group protein B1-like isoform 6 [Gorilla
gorilla gorilla]
gi|426375091|ref|XP_004054381.1| PREDICTED: high mobility group protein B1-like isoform 7 [Gorilla
gorilla gorilla]
gi|426375093|ref|XP_004054382.1| PREDICTED: high mobility group protein B1-like isoform 8 [Gorilla
gorilla gorilla]
gi|441624073|ref|XP_004088962.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624077|ref|XP_004088963.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624084|ref|XP_004088964.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624090|ref|XP_004088965.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624094|ref|XP_004088966.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|123369|sp|P09429.3|HMGB1_HUMAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|61213476|sp|Q6YKA4.3|HMGB1_CANFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|75076928|sp|Q4R844.3|HMGB1_MACFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|119370722|sp|Q08IE6.3|HMGB1_HORSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028296|sp|B0CM99.1|HMGB1_CALJA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028297|sp|B1MTB0.1|HMGB1_CALMO RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028298|sp|A9RA84.1|HMGB1_PAPAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|32327|emb|CAA31110.1| unnamed protein product [Homo sapiens]
gi|1435197|gb|AAB08987.1| non-histone chromatin protein HMG1 [Homo sapiens]
gi|13097234|gb|AAH03378.1| High-mobility group box 1 [Homo sapiens]
gi|21410205|gb|AAH30981.1| High-mobility group box 1 [Homo sapiens]
gi|30582719|gb|AAP35586.1| high-mobility group box 1 [Homo sapiens]
gi|37380997|gb|AAQ91389.1| high mobility group protein 1 [Homo sapiens]
gi|37548602|gb|AAN11296.1| high mobility group protein B1 [Canis lupus familiaris]
gi|37722533|gb|AAN11319.1| high mobility group B1 protein [Canis lupus familiaris]
gi|44890726|gb|AAH66889.1| High-mobility group box 1 [Homo sapiens]
gi|45709178|gb|AAH67732.1| High-mobility group box 1 [Homo sapiens]
gi|51476884|emb|CAH18408.1| hypothetical protein [Homo sapiens]
gi|54697178|gb|AAV38961.1| high-mobility group box 1 [Homo sapiens]
gi|60654989|gb|AAX32058.1| high mobility group box 1 [synthetic construct]
gi|61357252|gb|AAX41359.1| high-mobility group box 1 [synthetic construct]
gi|67968740|dbj|BAE00728.1| unnamed protein product [Macaca fascicularis]
gi|115354285|dbj|BAF33339.1| high-mobility group box 1 [Equus caballus]
gi|119628862|gb|EAX08457.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628864|gb|EAX08459.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628865|gb|EAX08460.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628866|gb|EAX08461.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628867|gb|EAX08462.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|121073803|gb|ABM47301.1| high mobility group box 1 protein [Homo sapiens]
gi|152112978|gb|ABS29271.1| high-mobility group box 1 [Homo sapiens]
gi|158256420|dbj|BAF84183.1| unnamed protein product [Homo sapiens]
gi|162415900|gb|ABX89266.1| high-mobility group box 1 (predicted) [Papio anubis]
gi|165934066|gb|ABY74560.1| high-mobility group box 1 (predicted) [Callithrix jacchus]
gi|169402702|gb|ACA53510.1| high-mobility group box 1 (predicted) [Callicebus moloch]
gi|183396417|gb|ACC62098.1| high-mobility group box 1 (predicted) [Rhinolophus ferrumequinum]
gi|193783763|dbj|BAG53745.1| unnamed protein product [Homo sapiens]
gi|196050399|gb|ACG64310.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
gi|216397586|gb|ACJ72830.1| high-mobility group box 1 (predicted) [Oryctolagus cuniculus]
gi|261858262|dbj|BAI45653.1| high-mobility group box 1 [synthetic construct]
gi|335775462|gb|AEH58580.1| high mobility group protein B1-like protein [Equus caballus]
gi|351700460|gb|EHB03379.1| High mobility group protein B1 [Heterocephalus glaber]
gi|387542840|gb|AFJ72047.1| high mobility group protein B1 [Macaca mulatta]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|417397281|gb|JAA45674.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 216
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 149
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 AKLKEKYEKDIAAY 163
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQ 106
+ K+ Y + M+
Sbjct: 65 KADKARYEREMK 76
>gi|402854944|ref|XP_003892110.1| PREDICTED: high mobility group protein B1-like isoform 1 [Papio
anubis]
gi|402854946|ref|XP_003892111.1| PREDICTED: high mobility group protein B1-like isoform 2 [Papio
anubis]
Length = 214
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|397495503|ref|XP_003818592.1| PREDICTED: high mobility group protein B1-like [Pan paniscus]
Length = 209
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|348551709|ref|XP_003461672.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
Length = 214
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|109510563|ref|XP_001059688.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343404|ref|XP_003754879.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|41386729|ref|NP_788785.1| high mobility group protein B1 [Bos taurus]
gi|410947173|ref|XP_003980327.1| PREDICTED: high mobility group protein B1 [Felis catus]
gi|123367|sp|P10103.3|HMGB1_BOVIN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|417|emb|CAA31284.1| unnamed protein product [Bos taurus]
gi|73586656|gb|AAI02930.1| HMGB1 protein [Bos taurus]
gi|146231904|gb|ABQ13027.1| high-mobility group box 1 [Bos taurus]
gi|296481787|tpg|DAA23902.1| TPA: high mobility group protein B1 [Bos taurus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|6754208|ref|NP_034569.1| high mobility group protein B1 [Mus musculus]
gi|6981026|ref|NP_037095.1| high mobility group protein B1 [Rattus norvegicus]
gi|407262920|ref|XP_003945388.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
gi|52783618|sp|P63159.2|HMGB1_RAT RecName: Full=High mobility group protein B1; AltName:
Full=Amphoterin; AltName: Full=Heparin-binding protein
p30; AltName: Full=High mobility group protein 1;
Short=HMG-1
gi|52783747|sp|P63158.2|HMGB1_MOUSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|9082303|gb|AAF82799.1|AF275734_1 amphoterin [Rattus norvegicus]
gi|53382|emb|CAA78042.1| non-histone chromosomal high-mobility group 1 protein [Mus
musculus]
gi|56365|emb|CAA68526.1| unnamed protein product [Rattus norvegicus]
gi|202885|gb|AAA40729.1| Amphoterin [Rattus norvegicus]
gi|208488|gb|AAA73006.1| high mobility group 1 protein [synthetic construct]
gi|437102|gb|AAA20508.1| HMG-1 [Mus musculus]
gi|13879238|gb|AAH06586.1| High mobility group box 1 [Mus musculus]
gi|14250281|gb|AAH08565.1| High mobility group box 1 [Mus musculus]
gi|26332344|dbj|BAC29902.1| unnamed protein product [Mus musculus]
gi|26351305|dbj|BAC39289.1| unnamed protein product [Mus musculus]
gi|38512146|gb|AAH61779.1| High mobility group box 1 [Rattus norvegicus]
gi|51859468|gb|AAH81839.1| High mobility group box 1 [Rattus norvegicus]
gi|52789475|gb|AAH83067.1| High mobility group box 1 [Mus musculus]
gi|54648288|gb|AAH85090.1| High mobility group box 1 [Mus musculus]
gi|56788766|gb|AAH88402.1| High mobility group box 1 [Rattus norvegicus]
gi|61403558|gb|AAH91741.1| High mobility group box 1 [Mus musculus]
gi|62739258|gb|AAH94030.1| High mobility group box 1 [Mus musculus]
gi|74186113|dbj|BAE34226.1| unnamed protein product [Mus musculus]
gi|84040262|gb|AAI10668.1| Hmgb1 protein [Mus musculus]
gi|84105496|gb|AAI11469.1| High mobility group box 1 [Mus musculus]
gi|149034811|gb|EDL89531.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034812|gb|EDL89532.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034813|gb|EDL89533.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|195539712|gb|AAI68143.1| High mobility group box 1 [Rattus norvegicus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|30584163|gb|AAP36330.1| Homo sapiens high-mobility group box 1 [synthetic construct]
gi|54697182|gb|AAV38963.1| high-mobility group box 1 [synthetic construct]
gi|54697184|gb|AAV38964.1| high-mobility group box 1 [synthetic construct]
gi|61367269|gb|AAX42974.1| high-mobility group box 1 [synthetic construct]
gi|61367275|gb|AAX42975.1| high-mobility group box 1 [synthetic construct]
gi|61371572|gb|AAX43692.1| high-mobility group box 1 [synthetic construct]
Length = 216
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|5764680|gb|AAC27653.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS +EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAEEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|51858856|gb|AAH81424.1| Hmgb3b protein [Danio rerio]
Length = 166
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN P+RPPS FF+F E R K +P+ + V K G W ++S+ EK PF+
Sbjct: 86 KQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNPS-LGIGDVAKKLGGMWNNLSDSEKQPFL 144
Query: 92 ERAEKRKSDYNKNMQDYNKQ 111
A+K K Y K+M Y K+
Sbjct: 145 SNADKLKDKYQKDMAFYKKK 164
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KPK SA+ F++ R++ + +P + + K E+WK+MS EK F + A
Sbjct: 5 DPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLA 64
Query: 95 EKRKSDYNKNMQDYN 109
++ K+ Y++ M YN
Sbjct: 65 KQDKARYDQEMMHYN 79
>gi|3342573|gb|AAC27651.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + + E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSERCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|74181373|dbj|BAE29962.1| unnamed protein product [Mus musculus]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKRKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|387914026|gb|AFK10622.1| high mobility group box 3 [Callorhinchus milii]
Length = 210
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V D ++K+ G K KDPN PKRPPS FF+F + R + K P
Sbjct: 71 AKVDKVRYDREMKTYIPPKGS-----KKKKDPNAPKRPPSGFFLFCSDHRPKIKAGSPGL 125
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ V K GE W +++EK P+ +A K K Y K++ DY
Sbjct: 126 -TIGDVAKKLGELWNGCTDEEKKPYNAKAAKLKEKYEKDVADY 167
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFV 91
A +DP KP+ S++ F++ R++ K+ +P+ + + K E+WK+MS EK+ F
Sbjct: 9 AKRDPKKPRGKMSSYAYFVQTCREEHKKKNPDVPVNFSDFSKRCSERWKTMSGKEKSKFE 68
Query: 92 ERAEKRKSDYNKNMQDY 108
+ A+ K Y++ M+ Y
Sbjct: 69 DLAKVDKVRYDREMKTY 85
>gi|123368|sp|P07156.1|HMGB1_CRIGR RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|49483|emb|CAA68441.1| high mobility group protein [Cricetulus griseus]
Length = 180
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 113
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 114 AKLKEKYEKDIAAY 127
>gi|380793129|gb|AFE68440.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|380793127|gb|AFE68439.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|119628863|gb|EAX08458.1| high-mobility group box 1, isoform CRA_b [Homo sapiens]
Length = 206
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|26341410|dbj|BAC34367.1| unnamed protein product [Mus musculus]
Length = 178
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|51592117|ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa]
gi|123371|sp|P12682.3|HMGB1_PIG RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|164490|gb|AAA31050.1| non-histone protein HMG1 [Sus scrofa]
Length = 215
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKHPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|392877702|gb|AFM87683.1| high mobility group box 3 [Callorhinchus milii]
Length = 203
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V D ++K+ G K KDPN PKRPPS FF+F + R + K P
Sbjct: 64 AKVDKVRYDREMKTYIPPKGS-----KKKKDPNAPKRPPSGFFLFCSDHRPKIKAGSPGL 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ V K GE W +++EK P+ +A K K Y K++ DY
Sbjct: 119 -TIGDVAKKLGELWNGCTDEEKKPYNAKAAKLKEKYEKDVADY 160
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFV 91
A +DP KP+ S++ F++ R++ K+ +P+ + + K E+WK+MS EK+ F
Sbjct: 2 AKRDPKKPRGKMSSYAYFVQTCREEHKKKNPDVPVNFSDFSKRCSERWKTMSGKEKSKFE 61
Query: 92 ERAEKRKSDYNKNMQDY 108
+ A+ K Y++ M+ Y
Sbjct: 62 DLAKVDKVRYDREMKTY 78
>gi|332863449|ref|XP_001169802.2| PREDICTED: high mobility group protein B1-like, partial [Pan
troglodytes]
Length = 174
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|149691739|ref|XP_001488130.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 212
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+P KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 EPKKPRGRMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|146163497|ref|XP_001011529.2| HMG box family protein [Tetrahymena thermophila]
gi|146146042|gb|EAR91284.2| HMG box family protein [Tetrahymena thermophila SB210]
Length = 2400
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 7/119 (5%)
Query: 14 DSKLKSKGARAGKRTAKPKAA--KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATV 71
D LK K G ++ PK + KDP+ PK+P +A+ ++ + +++F + +PN + +
Sbjct: 2183 DVPLKKK---TGNKSGVPKNSEIKDPDMPKKPSTAYILYFKNRKEKFLQQYPNF-GITEI 2238
Query: 72 GKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSE 130
K ++W +S +++ PF+ AEK K DY + M++Y + G+ E K++ +
Sbjct: 2239 TKLIAKEWSELSREKQIPFLRDAEKAKLDYIERMKEYASK-HPGIKVPGEGRRRKNRPQ 2296
>gi|444721179|gb|ELW61931.1| High mobility group protein B1 [Tupaia chinensis]
Length = 212
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ + K GE W + + D K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SMGDIAKKLGELWNNTAADGKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y KN+ Y
Sbjct: 149 AKLKEKYEKNIAAY 162
>gi|332254661|ref|XP_003276450.1| PREDICTED: high mobility group protein B4 [Nomascus leucogenys]
Length = 189
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +PN SV V KA GE W + ++ EK P+ +RA
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPN-WSVVQVAKATGEMWSTTTDLEKHPYEQRAA 147
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y + ++ Y KQ
Sbjct: 148 LLRAKYFEELELYRKQ 163
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R FKE PN + E+W+S+S+ EKA + A+
Sbjct: 8 KPKANVSSYVHFLLNYRNTFKEQQPNTYVGFKEFSRKCSEEWRSISKHEKAKYEALAKVD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>gi|392575401|gb|EIW68534.1| hypothetical protein TREMEDRAFT_32029 [Tremella mesenterica DSM
1558]
Length = 116
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 16 KLKSKGARAGKRTAK----PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATV 71
K+ +K +A K+T PK KDPN PKR SA+ F++++R + K HP+ S
Sbjct: 3 KVSTKETKASKKTETTKRAPKEKKDPNAPKRGLSAYMFFVQDYRPKIKNDHPDV-SFGET 61
Query: 72 GKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEV 131
GK GEKWK+MS EK PF + A K K K+ + Y LA G E+ S KSK V
Sbjct: 62 GKLLGEKWKAMSAAEKKPFEDLAAKDKLRAEKDKKAY---LATG--GGEKKTSKKSKPAV 116
>gi|296479353|tpg|DAA21468.1| TPA: high-mobility group box 1-like [Bos taurus]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAVDDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ + HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KVDKARYEREMKTY 78
>gi|291415754|ref|XP_002724114.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A
Sbjct: 115 DPNAPKRPPSAFFLFCSEHRPEIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAA 173
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 174 KLKEKYEKDIAAY 186
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F A
Sbjct: 29 DPNKPRDKMSSYAFFVQMCREEHKKKHPDSSINFAEFSKKCSERWKTMSAKEKSKFENMA 88
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 89 KSDKARYDREMKNY 102
>gi|159162414|pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
gi|159162415|pdb|1HMF|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
Length = 77
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 60
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 61 AKLKEKYEKDIAAY 74
>gi|157820087|ref|NP_001102843.1| high mobility group box 1 like [Rattus norvegicus]
gi|149043247|gb|EDL96779.1| rCG50935 [Rattus norvegicus]
Length = 214
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIPAY 162
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|301763549|ref|XP_002917185.1| PREDICTED: high mobility group protein B4-like [Ailuropoda
melanoleuca]
Length = 193
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +PN SV V KA+G+ W + ++ EK P+ +RA
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENPN-WSVVQVAKASGKMWSATTDAEKQPYEQRAA 149
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y + ++ Y KQ
Sbjct: 150 LLRAKYQEELEIYRKQ 165
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 10 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 70 KARYQEEMMNY 80
>gi|402865885|ref|XP_003897133.1| PREDICTED: high mobility group protein B1-like [Papio anubis]
Length = 221
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 96 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 154
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 155 AKLKEKYEKDIAAY 168
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ +
Sbjct: 65 KADKARYEREMKTW 78
>gi|410057418|ref|XP_003954213.1| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 210
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP SV V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SVGDVAKKLGEMWNNAAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|354468511|ref|XP_003496696.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
gi|344237248|gb|EGV93351.1| High mobility group protein B1 [Cricetulus griseus]
Length = 220
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K PF ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPFEKKA 148
Query: 95 EKRKSDYNKNM 105
K K Y K++
Sbjct: 149 AKLKEKYEKDI 159
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444707034|gb|ELW48343.1| High mobility group protein B1 [Tupaia chinensis]
Length = 203
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 136
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 137 AKLKEKYEKDIAAY 150
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A+ K+ Y +
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 61
Query: 104 NMQDY 108
M+ Y
Sbjct: 62 EMKTY 66
>gi|149030113|gb|EDL85190.1| rCG63106 [Rattus norvegicus]
Length = 201
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 136
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 137 AKLKEKYEKDIAAY 150
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A+ K+ Y +
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 61
Query: 104 NMQDY 108
M+ Y
Sbjct: 62 EMKTY 66
>gi|449534501|ref|XP_004174200.1| PREDICTED: high mobility group B protein 3-like [Cucumis sativus]
Length = 66
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 42/51 (82%)
Query: 82 MSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
MS+ EKAP++ +A+KRK +Y KNM+ YNK+ A G NAAEE+ES+KS SEVN
Sbjct: 1 MSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVN 51
>gi|600761|gb|AAA57042.1| high mobility group 1 protein [Mus musculus]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|148680486|gb|EDL12433.1| mCG1219 [Mus musculus]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ ++ F++ R++ K+ HP+ + + + K E+WK+M EK F + A
Sbjct: 5 DPKKPRGKMYSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMYAKEKGKFEDIA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|229367846|gb|ACQ58903.1| High mobility group protein B2 [Anoplopoma fimbria]
Length = 213
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFFVF + R + KE +P S+ + K GE W + + +K P+ RA
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRPRIKEENPGI-SIGDIAKKLGEFWSTQTSKDKVPYEARAG 150
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVE 92
KDPNKP+ S++ F+ R++ K+ HP + A K E+WK+MS EK F +
Sbjct: 2 TKDPNKPRGKTSSYAFFVATCREEHKKKHPGVSVGFAEFSKKCSERWKTMSAKEKVKFED 61
Query: 93 RAEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 62 LAKNDKVRYEREMKTY 77
>gi|410932269|ref|XP_003979516.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
gi|410933007|ref|XP_003979884.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
Length = 209
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V D ++ K K K KDPN PKRPPSAFF+F EFR + K HP
Sbjct: 67 AKQDKVRYDREMMD--YVPAKGGKKKKKFKDPNAPKRPPSAFFIFCSEFRPKVKGEHPGL 124
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
++ V K GE W + + ++K P+ ++A K K Y K++ Y ++ G +A
Sbjct: 125 -TIGEVAKKLGELWNNTNSEDKQPYEKKASKLKEKYEKDVAAYRQKTKGGSGSA 177
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFV 91
+ ++ KP+ S++ F++ R++ K+ HP+ + + + + E+WK+MS EK F
Sbjct: 5 SGREAGKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSRKCSERWKTMSVKEKGKFE 64
Query: 92 ERAEKRKSDYNKNMQDY 108
+ A++ K Y++ M DY
Sbjct: 65 DLAKQDKVRYDREMMDY 81
>gi|221219434|gb|ACM08378.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + ++K+ G+ K K KDPN PKRPPSAFF+F +FR + K HP
Sbjct: 63 AKQDKVRYEREMKNYIPPNGQ---KKKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K G W S + +EK P+ ++A K Y+K++ Y
Sbjct: 120 -SIGDTAKKLGVMWNSSAAEEKKPYEKKAATLKEKYDKDIASY 161
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R + K+ HP + + A K E+WK MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A++ K Y + M++Y
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|167744990|pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 152
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 153 KKAAKLKEKYEKDIAAY 169
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 12 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 71
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 72 KADKARYEREMKTY 85
>gi|326918606|ref|XP_003205579.1| PREDICTED: high mobility group protein B2-like [Meleagris
gallopavo]
Length = 246
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A
Sbjct: 129 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAA 187
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 188 KLKEKYEKDIAAY 200
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
S++ F++ R++ K+ HP++ + A + E+WK+MS EK F E A+ K+ Y++
Sbjct: 52 SSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDR 111
Query: 104 NMQDY 108
M++Y
Sbjct: 112 EMKNY 116
>gi|449500530|ref|XP_002187513.2| PREDICTED: high mobility group protein B2 [Taeniopygia guttata]
Length = 145
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A
Sbjct: 40 DPNAPKRPPSAFFLFCSEHRPKIKNEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAA 98
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 99 KLKEKYEKDIAAY 111
>gi|380792505|gb|AFE68128.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 183
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K + Y
Sbjct: 149 AKLKEKYEKEIAAY 162
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|186701221|gb|ACC91248.1| high mobility group HMG1/2 family protein [Arabidopsis halleri]
Length = 456
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK P SAF V+ E R +E ++KSV V K GE+WK++S+ +KAP+ E A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRE---DSKSVVEVAKITGEEWKNLSDKKKAPYEEVAK 307
Query: 96 KRKSDYNKNMQDYNK 110
K K Y + M++Y +
Sbjct: 308 KNKETYLQAMEEYKR 322
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S++F+F ++ RK+ E P NN +TV KWK + E+EK + ++
Sbjct: 375 DPNKPKKPASSYFLFSKDERKRLIEERPGTNN---STVTALISVKWKELGEEEKQVYNKK 431
Query: 94 AEKRKSDYNKNMQDYNKQLA 113
A K Y K ++ YNK+ A
Sbjct: 432 AAKLMEAYKKEVEAYNKKSA 451
>gi|281349442|gb|EFB25026.1| hypothetical protein PANDA_005395 [Ailuropoda melanoleuca]
Length = 181
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +PN SV V KA+G+ W + ++ EK P+ +RA
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPN-WSVVQVAKASGKMWSATTDAEKQPYEQRAA 147
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y + ++ Y KQ
Sbjct: 148 LLRAKYQEELEIYRKQ 163
Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 8 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>gi|118488333|gb|ABK95985.1| unknown [Populus trichocarpa]
Length = 232
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK P SAFF+F E R NK+V V K AGE+WK+M+E +K P+ E A+
Sbjct: 29 DPLKPKHPLSAFFLFSNERRAAL---LAENKNVLEVAKIAGEEWKNMTEKQKRPYEEIAK 85
Query: 96 KRKSDYNKNMQDY 108
K K Y + M+ Y
Sbjct: 86 KNKEKYTQEMEAY 98
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPK+P S+F +F +E RK HP S +T+ KWK + ++EK + +A
Sbjct: 154 DPNKPKKPASSFLLFSKETRKSLVHEHPGINS-STLTAMISVKWKELIQEEKQIWNCKAA 212
Query: 96 KRKSDYNKNMQDYNKQLA 113
+ Y K +++Y+K +A
Sbjct: 213 EAMEAYKKELEEYHKSVA 230
>gi|432895946|ref|XP_004076239.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 206
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
++ D V D ++ S G AK K KDPN PKRPPSAFF+F EFR + K P
Sbjct: 63 ARQDKVRYDREMMSYVPAKG---AKTKKFKDPNAPKRPPSAFFIFCSEFRPKVKGESPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ V K GE W S S ++K P+ ++A K K Y K++ Y
Sbjct: 120 -TIGDVAKRLGEMWNSTSAEDKQPYEKKAAKLKEKYGKDIAAY 161
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP+ + + A K E+WK+MS EK F +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A + K Y++ M Y
Sbjct: 63 ARQDKVRYDREMMSY 77
>gi|109469394|ref|XP_001076232.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392338825|ref|XP_003753645.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 214
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTASDDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K+ Y
Sbjct: 149 AKLKEKYEKDTAAY 162
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + V K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|56756695|gb|AAW26520.1| SJCHGC07008 protein [Schistosoma japonicum]
Length = 213
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
++T K K KDPN P RP SA+F++ E R++ ++ SVA V KA GE W++M +
Sbjct: 115 RQTKKQKKPKDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRNMDSE 174
Query: 86 EKAPFVERAEKRKSDYNKNMQDYNKQLA 113
K+ + R ++ K Y ++++ Y L+
Sbjct: 175 TKSTYQSRVDELKKKYQEDLRVYQSNLS 202
>gi|334186863|ref|NP_001190816.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|332659408|gb|AEE84808.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 450
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK P SAF V+ E R +E NKSV V K GE+WK++S+ +KAP+ + A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 96 KRKSDYNKNMQDYNK 110
K K Y + M++Y +
Sbjct: 308 KNKETYLQAMEEYKR 322
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S++F+F ++ RK+ E P NN ATV KWK +SE+EK + +
Sbjct: 369 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN---ATVTALISLKWKELSEEEKQVYNGK 425
Query: 94 AEKRKSDYNKNMQDYNKQLA 113
A K Y K ++ YNK+ A
Sbjct: 426 AAKLMEAYKKEVEAYNKKSA 445
>gi|15236607|ref|NP_194111.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266376|sp|Q9SUP7.1|HMGB6_ARATH RecName: Full=High mobility group B protein 6; AltName:
Full=Nucleosome/chromatin assembly factor group D 06;
Short=Nucleosome/chromatin assembly factor group D 6;
AltName: Full=WRKY transcription factor 53;
Short=AtWRKY53; Short=WRKY DNA-binding protein 53
gi|4454049|emb|CAA23046.1| 98b like protein [Arabidopsis thaliana]
gi|7269229|emb|CAB81298.1| 98b like protein [Arabidopsis thaliana]
gi|18377799|gb|AAL67049.1| putative 98b protein [Arabidopsis thaliana]
gi|20465867|gb|AAM20038.1| putative 98b protein [Arabidopsis thaliana]
gi|22022506|gb|AAM83212.1| putative 98b protein [Arabidopsis thaliana]
gi|332659407|gb|AEE84807.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 456
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK P SAF V+ E R +E NKSV V K GE+WK++S+ +KAP+ + A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 96 KRKSDYNKNMQDYNK 110
K K Y + M++Y +
Sbjct: 308 KNKETYLQAMEEYKR 322
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S++F+F ++ RK+ E P NN ATV KWK +SE+EK + +
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN---ATVTALISLKWKELSEEEKQVYNGK 431
Query: 94 AEKRKSDYNKNMQDYNKQLA 113
A K Y K ++ YNK+ A
Sbjct: 432 AAKLMEAYKKEVEAYNKKSA 451
>gi|297813579|ref|XP_002874673.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
gi|297320510|gb|EFH50932.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK P SA+ ++ E R K NKSV V K GE+WK++SE++KAP+ + A+
Sbjct: 244 DPLKPKHPISAYLIYANERRAALK---GENKSVIEVAKMTGEEWKNLSEEQKAPYDQMAK 300
Query: 96 KRKSDYNKNMQDY 108
K+K Y + M+ Y
Sbjct: 301 KKKEIYLQEMEGY 313
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S++F+F +E RK E HP NN +TV KWK + E+EK + +
Sbjct: 370 DPNKPKKPASSYFLFCKEARKSVLEEHPGINN---STVTAHISLKWKELGEEEKQVYNGK 426
Query: 94 AEKRKSDYNKNMQDYNK 110
A + Y K +++YNK
Sbjct: 427 AAELMEAYKKEVEEYNK 443
>gi|62955511|ref|NP_001017769.1| high mobility group protein B3 [Danio rerio]
gi|62202670|gb|AAH93186.1| High-mobility group box 3b [Danio rerio]
gi|182890656|gb|AAI64996.1| Hmgb3b protein [Danio rerio]
Length = 198
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN P+RPPS FF+F E R K +P+ + V K G W ++S+ EK PF+
Sbjct: 86 KQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNPS-LGIGDVAKKLGGMWNNLSDSEKQPFL 144
Query: 92 ERAEKRKSDYNKNMQDY 108
A+K K Y K+M Y
Sbjct: 145 SNADKLKDKYQKDMAFY 161
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KPK SA+ F++ R++ + +P + + K E+WK+MS EK F + A
Sbjct: 5 DPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLA 64
Query: 95 EKRKSDYNKNMQDYN 109
++ K+ Y++ M YN
Sbjct: 65 KQDKARYDQEMMHYN 79
>gi|426232480|ref|XP_004010250.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP SV V K G+ W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SVGDVAKKLGQMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+P KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 EPKKPRGKMSSYAFFVQTCREERKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|15237042|ref|NP_192846.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266789|sp|Q9T012.1|HMG13_ARATH RecName: Full=High mobility group B protein 13; AltName:
Full=Nucleosome/chromatin assembly factor group D 13
gi|4850287|emb|CAB43043.1| 98b like protein [Arabidopsis thaliana]
gi|7267807|emb|CAB81209.1| 98b like protein [Arabidopsis thaliana]
gi|22136604|gb|AAM91621.1| putative 98b protein [Arabidopsis thaliana]
gi|332657570|gb|AEE82970.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 446
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK+P SA+ ++ E R K NKSV V K AGE+WK++SE++KAP+ + A+
Sbjct: 242 DPLKPKQPISAYLIYANERRAALK---GENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 96 KRKSDYNKNMQDYNK 110
K K Y + M+ Y +
Sbjct: 299 KNKEIYLQEMEGYKR 313
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S++F+F ++ RK E HP NN +TV KW + E+EK + +
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINN---STVTAHISLKWMELGEEEKQVYNSK 424
Query: 94 AEKRKSDYNKNMQDYNK 110
A + Y K +++YNK
Sbjct: 425 AAELMEAYKKEVEEYNK 441
>gi|224058355|ref|XP_002299486.1| high mobility group family [Populus trichocarpa]
gi|222846744|gb|EEE84291.1| high mobility group family [Populus trichocarpa]
Length = 498
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK P SAFF+F E R NK+V V K AGE+WK+M+E +K P+ E A+
Sbjct: 295 DPLKPKHPLSAFFLFSNERRAAL---LAENKNVLEVAKIAGEEWKNMTEKQKRPYEEIAK 351
Query: 96 KRKSDYNKNMQDY 108
K K Y + M+ Y
Sbjct: 352 KNKEKYTQEMEAY 364
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPK+P S+F +F +E RK HP S +T+ KWK + ++EK + +A
Sbjct: 420 DPNKPKKPASSFLLFSKETRKSLVHEHPGINS-STLTAMISVKWKELIQEEKQIWNCKAA 478
Query: 96 KRKSDYNKNMQDYNKQLA 113
+ Y K +++Y+K +A
Sbjct: 479 EAMEAYKKELEEYHKSVA 496
>gi|426236473|ref|XP_004012193.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K G+ W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGQMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|426244704|ref|XP_004016160.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 203
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K G+ W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGQMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|397502952|ref|XP_003822100.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
gi|410056873|ref|XP_003317692.2| PREDICTED: high mobility group protein B3-like [Pan troglodytes]
Length = 221
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V D ++K G G + KDPN KRP S FF+F EF + K +P
Sbjct: 84 AKVDKVHYDQEMKDNGPVEGGKK------KDPNALKRPLSGFFLFCSEFHPKIKSTNPGI 137
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ + K GE W + S+ EK P++ +A K Y K++ DY
Sbjct: 138 -SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADY 179
>gi|395857899|ref|XP_003801318.1| PREDICTED: high mobility group protein B4 [Otolemur garnettii]
Length = 187
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +PN SV V KA+G+ W + EK P+ ERA
Sbjct: 89 DPQAPRRPPSSFLLFCKDHYAQLKRENPN-WSVVQVAKASGKMWSLSTNAEKQPYEERAA 147
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y + +Q Y +Q
Sbjct: 148 LLRAKYQEELQIYRRQC 164
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 8 RPKVNVSSYIHFLLNYRNKFKEQQPNTYVGFKDFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M Y
Sbjct: 68 KARYQEEMMHY 78
>gi|218117885|dbj|BAH03305.1| structure-specific recognition protein 1 [Gallus gallus]
Length = 706
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK+MS++
Sbjct: 531 KKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPG-ISITDLSKKAGELWKAMSKE 589
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE K DY K M++Y+
Sbjct: 590 KKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|167396118|ref|XP_001741910.1| non-histone chromosomal protein [Entamoeba dispar SAW760]
gi|165893321|gb|EDR21615.1| non-histone chromosomal protein, putative [Entamoeba dispar SAW760]
Length = 111
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN+PK+P SA+F+++ E R KE HP+ K + K A E+WK++ E+EK + +A+
Sbjct: 23 PNRPKKPQSAYFLYLNEHRASIKEEHPDIK-FTEISKVASEQWKALGEEEKKEYQAKADA 81
Query: 97 RKSDYNKNMQDYN 109
+ Y K+M+ Y
Sbjct: 82 AREQYKKDMEKYT 94
>gi|57524786|ref|NP_001005796.1| FACT complex subunit SSRP1 [Gallus gallus]
gi|110283005|sp|Q04678.2|SSRP1_CHICK RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53128417|emb|CAG31300.1| hypothetical protein RCJMB04_4n20 [Gallus gallus]
Length = 706
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK+MS++
Sbjct: 531 KKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPG-ISITDLSKKAGELWKAMSKE 589
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE K DY K M++Y+
Sbjct: 590 KKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|348538096|ref|XP_003456528.1| PREDICTED: high mobility group protein B2-like [Oreochromis
niloticus]
Length = 196
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFFVF + R + KE +P S+ + K GE W + S +KAP+ +A
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKIKEDNPGI-SIGDIAKKLGEMWATQSAKDKAPYEAKAA 149
Query: 96 KRKSDYNKNMQDYNKQLADG 115
+ K Y K++ Y + G
Sbjct: 150 RLKEKYEKDVAAYRAKGGSG 169
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHP-NNKSVATVGKAAGEKWKSMSEDEKAPFVE 92
KDPNKP+ S++ F+ R++ K+ HP + + A K E+WK+MS EK F E
Sbjct: 2 TKDPNKPRGKTSSYAFFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMSPKEKGKFEE 61
Query: 93 RAEKRKSDYNKNMQDY 108
A+ K Y++ M+ Y
Sbjct: 62 MAKNDKVRYDREMKTY 77
>gi|119623033|gb|EAX02628.1| hCG1644442 [Homo sapiens]
Length = 201
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V D ++K G G + KDPN KRP S FF+F EF + K +P
Sbjct: 64 AKVDKVHYDQEMKDNGPVEGGKK------KDPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ + K GE W + S+ EK P++ +A K Y K++ DY
Sbjct: 118 -SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADY 159
>gi|82658290|ref|NP_001032501.1| high mobility group protein B2 [Danio rerio]
gi|81294190|gb|AAI07992.1| Zgc:123215 [Danio rerio]
Length = 213
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFFVF + R + K +P S+ + K GE W +S EK+P+ ++A
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKVKGDNPGI-SIGDIAKKLGEMWSKLSPKEKSPYEQKAM 149
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 KLKEKYEKDVAAY 162
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVE 92
KDPNKP+ S++ F++ R++ K+ +P + + K E+W++MS EK F E
Sbjct: 2 GKDPNKPRGKTSSYAFFVQTCREEHKKKNPGTSVNFSEFSKKCSERWRTMSSKEKGKFEE 61
Query: 93 RAEKRKSDYNKNMQDY 108
A+ K Y++ M++Y
Sbjct: 62 MAKTDKVRYDREMKNY 77
>gi|255537735|ref|XP_002509934.1| transcription factor, putative [Ricinus communis]
gi|223549833|gb|EEF51321.1| transcription factor, putative [Ricinus communis]
Length = 514
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK+P SAFF+F E R NK+V V K AGE+WK+M+E++K P+ E A+
Sbjct: 307 DPLKPKQPMSAFFLFSNERRASL---LAENKNVREVAKIAGEQWKNMTEEQKGPYEEMAK 363
Query: 96 KRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 364 RNKLRYMQEMEAY 376
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S+F +F +E RK + P NN +T+ KWK +SE+E+ + +
Sbjct: 432 DPNKPKKPASSFLIFSKEARKNLAQERPVINN---STLNALISVKWKELSEEERQIWNAK 488
Query: 94 AEKRKSDYNKNMQDYNKQLADG 115
A + Y K M++YNK A
Sbjct: 489 AAEAMEIYKKEMEEYNKTAATS 510
>gi|326920276|ref|XP_003206400.1| PREDICTED: FACT complex subunit SSRP1-like [Meleagris gallopavo]
Length = 706
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK+MS++
Sbjct: 531 KKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPG-ISITDLSKKAGELWKAMSKE 589
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE K DY K M++Y+
Sbjct: 590 KKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|332808386|ref|XP_513298.3| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4 [Pan
troglodytes]
Length = 186
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +PN SV V KA G+ W ++++ EK P+ +RA
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPN-WSVVQVAKATGKMWSTVTDLEKHPYEQRAA 147
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y + ++ Y KQ
Sbjct: 148 LLRAKYFEELELYRKQC 164
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>gi|112491006|pdb|2GZK|A Chain A, Structure Of A Complex Of Tandem Hmg Boxes And Dna
Length = 159
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 139
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 140 KKAAKLKEKYEKDIAAY 156
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KRP +AF V+ + R++ +P ++ + + K G +WK ++E EK PF + A+K ++
Sbjct: 6 KRPMNAFIVWSRDQRRKMALENPRMRN-SEISKQLGYQWKMLTEAEKWPFFQEAQKLQAM 64
Query: 101 YNKNMQDY 108
+ + +Y
Sbjct: 65 HREKYPNY 72
>gi|211520|gb|AAA48685.1| HMG box (bp. 1499..1757), partial [Gallus gallus]
Length = 669
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK+MS++
Sbjct: 494 KKQVESKKGKDPNVPKRPMSAYMLWLNANREKIKSDHPG-ISITDLSKKAGELWKAMSKE 552
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE K DY K M++Y+
Sbjct: 553 KKEEWDRKAEDAKRDYEKAMKEYS 576
>gi|449270893|gb|EMC81539.1| High mobility group protein B2 [Columba livia]
Length = 207
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A + E+WK+MS EK F E A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KGDKARYDREMKNY 78
>gi|348556930|ref|XP_003464273.1| PREDICTED: FACT complex subunit SSRP1-like [Cavia porcellus]
Length = 709
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 19 SKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEK 78
+K ++ K+T + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE
Sbjct: 526 TKDRKSRKKTVEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEI 584
Query: 79 WKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
WK MS+++K + +AE + +Y K M++Y
Sbjct: 585 WKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|300677968|gb|ADK27291.1| high-mobility-group B1b [Gekko japonicus]
Length = 215
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444708344|gb|ELW49421.1| High mobility group protein B1 [Tupaia chinensis]
Length = 302
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K+ G+ K KDPN PKRPPSAFF+F ++R + KE HP
Sbjct: 64 AKADKVHYEREIKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSDYRPKIKE-HPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
S+ V K GE W + + D+K P+ ++A K K Y K++ Y
Sbjct: 120 -SIGDVAKKLGEMWNNTATDDKQPYEKKAAKLKEKYEKDIAAYQ 162
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ +++ K+ HP + + + K E+WK MS +K F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEHKKEHPGVSVNFSEFSKKCSERWKIMSAKKKGKFEDTA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + ++ Y
Sbjct: 65 KADKVHYEREIKTY 78
>gi|335892930|gb|AEH59760.1| high mobility group box 2 [Lethenteron camtschaticum]
Length = 194
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD D ++K+ GKR K DPN PKRPPSAFFVF E R + K HP
Sbjct: 64 AKADKARYDREMKNYVPPKGKRKTK-----DPNAPKRPPSAFFVFCSEHRPKVKADHPGL 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
+ + K GE W ++ + K+P+ ++A K K Y K++ Y
Sbjct: 119 -GIGEIAKRLGEMWGLLTPETKSPYEKKAAKLKEKYEKDVAAY 160
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+P KP+ S++ F++ R++ K+ HP + + A K E+WK+MS EKA F E A
Sbjct: 5 EPGKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSPKEKARFEEMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KADKARYDREMKNY 78
>gi|327260386|ref|XP_003215015.1| PREDICTED: FACT complex subunit SSRP1-like [Anolis carolinensis]
Length = 705
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
KR ++ K KDPN PKRP SA+ +++ R + + P SV V K AGE WK+MS++
Sbjct: 531 KRQSEGKKGKDPNAPKRPLSAYMLWLNANRDKIRSESPG-MSVTDVSKKAGELWKAMSKE 589
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE K DY K M++YN
Sbjct: 590 KKEEWDRKAEDAKRDYEKAMKEYN 613
>gi|118343938|ref|NP_001071793.1| transcription factor protein [Ciona intestinalis]
gi|70570759|dbj|BAE06616.1| transcription factor protein [Ciona intestinalis]
Length = 164
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 20 KGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKW 79
K R+ +T K + KD N PK+P +A+F+FM + R++ + +P+ S+ + K G+KW
Sbjct: 3 KTKRSSLKTLKFR--KDKNAPKKPLTAYFIFMNDCRQKVIKENPS-LSITEISKLVGKKW 59
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
+ S +K PF ++A K + +YNK ++ YN
Sbjct: 60 RETSTKDKEPFNKKAAKLREEYNKKLEKYN 89
>gi|397482786|ref|XP_003812597.1| PREDICTED: high mobility group protein B4 [Pan paniscus]
Length = 177
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +PN SV V KA G+ W ++++ EK P+ +RA
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPN-WSVVQVAKATGKMWSTVTDLEKHPYEQRAA 147
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y + ++ Y KQ
Sbjct: 148 LLRAKYFEELELYRKQ 163
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>gi|211929|gb|AAA48819.1| high-mobility group-2 protein [Gallus gallus]
Length = 207
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ ++ K+ HP++ + A + E+WK+MS EK F E A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCPREHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KGDKARYDREMKNY 78
>gi|449269673|gb|EMC80424.1| High mobility group protein B1 [Columba livia]
Length = 209
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F EFR + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNK 103
++A K K Y K
Sbjct: 146 KKAAKLKEKYEK 157
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y K M++Y
Sbjct: 65 KADKLRYEKEMKNY 78
>gi|297706944|ref|XP_002830283.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pongo abelii]
Length = 125
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++K G A+ GK PN PKRP S FF+F EF + K +P
Sbjct: 2 AKADKVHYDREMKDYGPAKGGKN--------HPNAPKRPLSGFFLFCSEFCPKIKSTNPG 53
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P+V + K K Y K++ DY
Sbjct: 54 I-SIGDVVKKLGEMWNNLNDSEKQPYVTKVAKLKK-YEKDVADY 95
>gi|302684321|ref|XP_003031841.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune H4-8]
gi|300105534|gb|EFI96938.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune H4-8]
Length = 114
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 14 DSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK 73
D+K + K A ++T + KA KDPN PKR SA+ F +++R++ K +P+ S +GK
Sbjct: 6 DTKTRRKAATKSEKTPR-KAKKDPNAPKRALSAYMFFSQDWRERVKAENPDA-SFGELGK 63
Query: 74 AAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESD 125
G KWK M EDEK P+V +A K +K + +K D +AE +E+D
Sbjct: 64 ILGAKWKEMDEDEKKPYVAKAAK-----DKERAEADKAAYDEKKSAEASEAD 110
>gi|342319487|gb|EGU11435.1| Non-histone chromosomal protein [Rhodotorula glutinis ATCC 204091]
Length = 142
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 23 RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHP------NNKSVATVGKAAG 76
RA K +A KDPN PKRP SA+ F ++ R KE +P + +S+ +GK G
Sbjct: 8 RATKAATGGRAKKDPNAPKRPLSAYMHFSQDQRSVVKEENPDVTFVGHCESIGEIGKILG 67
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLAD 114
KWK + EDE+ P+ E+A KS Y K Y+ + D
Sbjct: 68 AKWKELPEDERKPYEEKASADKSRYEKEKAAYDAENPD 105
>gi|410966739|ref|XP_003989887.1| PREDICTED: high mobility group protein B4 [Felis catus]
Length = 193
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +PN SV V KA+G+ W + + EK P+ +RA
Sbjct: 91 DPYAPRRPPSSFLLFCQDHYAQLKRENPN-WSVVQVAKASGKMWSATTGAEKQPYEQRAA 149
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y ++++ Y KQ
Sbjct: 150 LLRAKYQEDLEIYRKQ 165
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S++ F+ +R +FKE PN S + EKW+S+S+ EKA + A+
Sbjct: 10 RPKANVSSYIHFLLNYRNKFKEQQPNTYLSFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 70 KARYQEEMMNY 80
>gi|326437020|gb|EGD82590.1| hypothetical protein PTSG_03243 [Salpingoeca sp. ATCC 50818]
Length = 210
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PK+P SA+FVF E R + +P ++ V+ K GE+W+ M+E++K PF +A
Sbjct: 133 KDPNAPKKPKSAYFVFAETRRDALRAQYPEDR-VSDTAKRTGEEWRGMTEEQKRPFQLKA 191
Query: 95 EKRKSDYNKNMQDYNKQL 112
++ K +Y++ + +Y L
Sbjct: 192 QELKQEYDQAVAEYKASL 209
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKP+ + + F +E R + HPN SV V K G +W+ +++++K P+ + A
Sbjct: 45 DPNKPRGALTPYMCFNKEVRPAIMQQHPNA-SVTEVAKLIGAQWRQLTDEQKKPYNDMAR 103
Query: 96 KRKSDYNKNMQDY 108
+ Y + M++Y
Sbjct: 104 TDRERYKEAMKNY 116
>gi|357513707|ref|XP_003627142.1| HMG1/2-like protein [Medicago truncatula]
gi|355521164|gb|AET01618.1| HMG1/2-like protein [Medicago truncatula]
Length = 248
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 4/62 (6%)
Query: 19 SKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEK 78
+K A+ GKR + KD N KR P+ FFVFM+EFRK FKEA+ ++K V VGK GEK
Sbjct: 189 AKRAKVGKR----EKVKDSNAAKRSPTDFFVFMDEFRKTFKEANLDSKDVKRVGKEDGEK 244
Query: 79 WK 80
W+
Sbjct: 245 WR 246
>gi|118343822|ref|NP_001071733.1| transcription factor protein [Ciona intestinalis]
gi|70569841|dbj|BAE06487.1| transcription factor protein [Ciona intestinalis]
Length = 204
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRP SAFF+F + R K +P +V + KA G+KW + S D K + E+ E
Sbjct: 94 DPNAPKRPQSAFFLFCADRRAPLKAENPGW-TVGEIAKALGKKWAAASPDTKKKYAEQGE 152
Query: 96 KRKSDYNKNMQDYNKQ 111
KS YNK M+ Y Q
Sbjct: 153 VEKSKYNKEMEKYRSQ 168
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV-ATVGKAAGEKWKSMSEDEKAPFVER 93
KDPNKP+ + + F++ R++ K HPN + V A + ++WK M++ EK F +
Sbjct: 5 KDPNKPRGRMTGYAYFVQTCREEHKRKHPNEQVVFAEFSRKCAKRWKPMTDKEKKTFTDM 64
Query: 94 AEKRKSDYNKNMQDY 108
AEK + Y + M+DY
Sbjct: 65 AEKDRQRYEREMKDY 79
>gi|339242839|ref|XP_003377345.1| high mobility group protein 1.2 [Trichinella spiralis]
gi|316973861|gb|EFV57410.1| high mobility group protein 1.2 [Trichinella spiralis]
Length = 229
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 9 DAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV 68
D V D++L++ G ++ + K KDPN PKR SAFF F R + ++AHP+ K V
Sbjct: 95 DRVRYDAELEAYGGDGLRKRKRSK--KDPNAPKRALSAFFFFSNSKRAEIQQAHPDWK-V 151
Query: 69 ATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
V + G WK++ EDEK F + A K ++ Y ++M++Y
Sbjct: 152 GQVAQELGRMWKAIDEDEKRKFEDMAAKDRTRYEEDMKNY 191
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 34 AKDPNKP--KRPPSAFFVFM--EEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKA 88
++ KP K P FFV M EE +K++ PN N V V K KWK+M+++EK
Sbjct: 31 VREAGKPRGKTTPYGFFVKMCYEEHKKKY----PNENVQVTEVSKKCSAKWKTMTQEEKH 86
Query: 89 PFVERAEKRKSDYNKNMQDY 108
F E A K + Y+ ++ Y
Sbjct: 87 RFYELAAKDRVRYDAELEAY 106
>gi|226443200|ref|NP_001140081.1| High mobility group-T protein [Salmo salar]
gi|223649418|gb|ACN11467.1| High mobility group-T protein [Salmo salar]
Length = 345
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + +++S G+ K K KDPN PKRP SAFF+F +FR Q K P
Sbjct: 205 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL 261
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GEKW +++ ++K P+ ++A K K Y K++ Y
Sbjct: 262 -SIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 303
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 13 TDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATV 71
T+S L+S+ A K + KDP KP+ S++ F++ R++ K+ HP + + +
Sbjct: 124 TNSDLQSRAEFAEKHL-DIEMGKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEF 182
Query: 72 GKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
K E+WK+MS EK F + A+ K Y + M+ Y
Sbjct: 183 SKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSY 219
>gi|395544035|ref|XP_003773918.1| PREDICTED: FACT complex subunit SSRP1 [Sarcophilus harrisii]
Length = 712
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS+D
Sbjct: 533 KKPVEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPG-ISITDLSKKAGEIWKGMSKD 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE+ K +Y K M++Y+
Sbjct: 592 KKEEWDRKAEEAKREYEKAMKEYS 615
>gi|403293162|ref|XP_003937591.1| PREDICTED: high mobility group protein B4 [Saimiri boliviensis
boliviensis]
Length = 254
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +P N SV V KA G+ W + ++ EK P+ +RA
Sbjct: 152 DPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSATTDLEKQPYEQRAA 210
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y + ++ Y KQ
Sbjct: 211 LLRAKYFEELELYRKQ 226
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 71 KPKANVSSYIHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 130
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 131 KARYQEEMMNY 141
>gi|441639466|ref|XP_004090212.1| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 131
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G G + K DPN P+RP S FF+F EF + K +P
Sbjct: 2 AKADKVHYDREMKDYGPAKGGKKKK-----DPNAPQRPLSGFFLFCSEFCPEIKSTNP-G 55
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P+V + K K Y K++ DY
Sbjct: 56 ISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLKK-YEKDVADY 97
>gi|355784552|gb|EHH65403.1| hypothetical protein EGM_02155, partial [Macaca fascicularis]
Length = 116
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D++ K G A+ GK DPN PKRP S FF+F EF + K +P
Sbjct: 2 AKADKVHNDTERKDYGPAKGGKNN-------DPNAPKRPLSGFFLFCSEFHPKMKSTNP- 53
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFV-ERAEKRKSDY 101
S+ V K GE W ++++ EK P++ ++ EK +DY
Sbjct: 54 GISIGDVAKKLGEMWNNLNDSEKQPYITKKYEKDVADY 91
>gi|444515932|gb|ELV11007.1| High mobility group protein B3 [Tupaia chinensis]
Length = 212
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD + D ++K G G + KDPN P+RPPS F +F EF + K +P
Sbjct: 64 AKADKIRYDWEMKDYGPAKGGK-----KKKDPNAPERPPSGFLLFCSEFHLKIKSTNPGI 118
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K E W + S+ EK P++ +A K K Y K++ +Y
Sbjct: 119 -SIGDVAKKLVEMWNNFSDSEKQPYITKAAKLKEKYKKDVANY 160
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFV 91
A DP KPK S + F++ R++ K+ +P T K ++WK+MS EK+ F
Sbjct: 2 AKSDPKKPKGKVSTYAFFVQTCREEHKKKNPEVPINFTEFSKKCSKRWKTMSGKEKSKFD 61
Query: 92 ERAEKRKSDYNKNMQDY 108
E A+ K Y+ M+DY
Sbjct: 62 EMAKADKIRYDWEMKDY 78
>gi|190195542|gb|ACE73639.1| high-mobility group box 1 (predicted) [Sorex araneus]
Length = 215
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP
Sbjct: 64 AKADKARYEREMKTYIPPKGETK---KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + D+K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|119596659|gb|EAW76253.1| hCG2042470 [Homo sapiens]
Length = 118
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRP S FF+F EF + K +P S+ V K GE W ++++ EK P+V +
Sbjct: 13 DPNAPKRPLSGFFLFCSEFCPKIKSTNPG-ISIGDVAKKLGEMWNNLNDSEKQPYVTKVA 71
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ DY
Sbjct: 72 KLKK-YEKDVADY 83
>gi|5764678|gb|AAC27650.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP
Sbjct: 64 AKADKARYEREMKTYIPPKGETK---KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + D+K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+ S EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTKSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|147903143|ref|NP_001079387.1| high mobility group box 2 [Xenopus laevis]
gi|80479234|gb|AAI08500.1| MGC52825 protein [Xenopus laevis]
Length = 211
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R Q K P S+ K GE+W + +K PF ++A
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETPGL-SIGDTAKKLGERWSEQTSKDKLPFEQKAA 150
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK F + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 65 KGDKVRYEREMKTY 78
>gi|27370889|gb|AAH41262.1| MGC52825 protein [Xenopus laevis]
Length = 212
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R Q K P S+ K GE+W + +K PF ++A
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETPGL-SIGDTAKKLGERWSEQTSKDKLPFEQKAA 150
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK F + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 65 KGDKVRYEREMKTY 78
>gi|355691926|gb|EHH27111.1| hypothetical protein EGK_17228 [Macaca mulatta]
Length = 196
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
D N PKRPPS FF+F EF + K +P S+ + K GE WK++++ EK P++ +A
Sbjct: 76 DSNAPKRPPSGFFLFSSEFCPKMKSTNPGI-SIGDMVKKLGEMWKNLNDSEKQPYITKAA 134
Query: 96 KRKSDYNKNMQD 107
K K Y K++ D
Sbjct: 135 KLKEKYEKDVAD 146
>gi|384489718|gb|EIE80940.1| hypothetical protein RO3G_05645 [Rhizopus delemar RA 99-880]
Length = 176
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K K KDPN PKR S++ ++ + R + HP+ K++ + K GE W +SE EKAP
Sbjct: 45 KKKVEKDPNAPKRNLSSYMLYSQAVRPKVAAEHPDMKAIE-IAKLVGEMWNKLSEKEKAP 103
Query: 90 FVERAEKRKSDYNKNMQDYNKQLA 113
++++AEK K + K Y LA
Sbjct: 104 YIKQAEKEKIRFEKENASYKTTLA 127
>gi|290998589|ref|XP_002681863.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
gi|284095488|gb|EFC49119.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
Length = 219
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMS 83
AGK++ K KDPN PK+P + +F+F +E R+ K KS + V K GE W S+S
Sbjct: 2 AGKKSTK---KKDPNAPKKPKTGYFLFCDEHREAAKAKTGEKKSASEVSKVLGEMWNSLS 58
Query: 84 EDEKAPFVERAEKRKSDYNKNMQDYNK 110
+++K P+ ++ +K YN M++Y K
Sbjct: 59 DEQKKPYNDKYKKSLDGYNAQMEEYKK 85
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
RP +++ +F +E RK+ E K V V K G WK MS+++K P++ +AEK K+ Y
Sbjct: 121 RPLTSYMIFSQEMRKKLLEEDSTLK-VTEVAKKVGALWKKMSDEQKKPYIAQAEKLKAAY 179
Query: 102 NKNMQDYN 109
++Y+
Sbjct: 180 KVQKEEYD 187
>gi|40352857|gb|AAH64790.1| Hmgb1 protein [Mus musculus]
Length = 215
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPP AFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|148226156|ref|NP_001084164.1| FACT complex subunit SSRP1 [Xenopus laevis]
gi|82175412|sp|Q9W602.1|SSRP1_XENLA RecName: Full=FACT complex subunit SSRP1; AltName: Full=DNA
unwinding factor 87 kDa subunit; Short=DUF87; AltName:
Full=Facilitates chromatin transcription complex subunit
ssrp1; AltName: Full=Structure-specific recognition
protein 1
gi|4586285|dbj|BAA76333.1| DUF87 [Xenopus laevis]
Length = 693
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 30 KPKA--AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEK 87
KP+A KDP PKRP SA+ +++ R++ K +P S+ + K AGE WK+MS D+K
Sbjct: 529 KPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPG-ISITDLSKKAGEIWKNMSRDKK 587
Query: 88 APFVERAEKRKSDYNKNMQDYN 109
+ RAE+ K DY K M++YN
Sbjct: 588 EEWDRRAEEAKRDYEKAMKEYN 609
>gi|444722397|gb|ELW63094.1| High mobility group protein B1 [Tupaia chinensis]
Length = 178
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K P S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIK-GEPPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y+K++ Y
Sbjct: 149 AKLKEKYDKDIAAY 162
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK--SVATVGKAAGEKWKSMSEDEKAPFVER 93
DP KP+ S++ F++ +++ K+ HP+ + + K E+WK+MS EK F +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEHKK-HPDASVNNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 94 AEKRKSDYNKNMQDY 108
A+ K+ Y + M+ Y
Sbjct: 64 AKADKAPYEREMKTY 78
>gi|444729709|gb|ELW70116.1| High mobility group protein B1 [Tupaia chinensis]
Length = 215
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP
Sbjct: 64 AKADKAHYEREMKTFIPPKGETK---KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + D+K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ +
Sbjct: 65 KADKAHYEREMKTF 78
>gi|83014391|ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP
Sbjct: 64 AKADKARYEREMKTYIPPKGETK---KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + D+K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|302814252|ref|XP_002988810.1| hypothetical protein SELMODRAFT_159743 [Selaginella moellendorffii]
gi|300143381|gb|EFJ10072.1| hypothetical protein SELMODRAFT_159743 [Selaginella moellendorffii]
Length = 647
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN PKR S F F R+ K++ P S V K GE+WK+MS+DEK PF +A
Sbjct: 561 PNAPKRALSGFMYFSLAERENLKKSTPG-ISFKDVAKTLGERWKAMSKDEKEPFESQARV 619
Query: 97 RKSDYNKNMQDYNKQLADGVNAAEEN 122
K Y K MQ YNK A G A +E+
Sbjct: 620 DKERYTKQMQGYNKGNAGGSTADDES 645
>gi|302762326|ref|XP_002964585.1| hypothetical protein SELMODRAFT_166865 [Selaginella moellendorffii]
gi|300168314|gb|EFJ34918.1| hypothetical protein SELMODRAFT_166865 [Selaginella moellendorffii]
Length = 647
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN PKR S F F R+ K++ P S V K GE+WK+MS+DEK PF +A
Sbjct: 561 PNAPKRALSGFMYFSLAERENLKKSTPG-ISFKDVAKTLGERWKAMSKDEKEPFESQARV 619
Query: 97 RKSDYNKNMQDYNKQLADGVNAAEEN 122
K Y K MQ YNK A G A +E+
Sbjct: 620 DKERYTKQMQGYNKGNAGGSTADDES 645
>gi|348525338|ref|XP_003450179.1| PREDICTED: high mobility group-T protein-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F +FR + K +P S+ K GE W S S +EK P+
Sbjct: 86 KRFKDPNAPKRPPSAFFLFCADFRPKIKSEYPGL-SIGDTAKKLGEMWNSSSAEEKQPYE 144
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y+K++ Y
Sbjct: 145 KKAAKLKEKYDKDIVAY 161
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVE 92
KDP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F +
Sbjct: 2 VKDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFED 61
Query: 93 RAEKRKSDYNKNMQDY 108
A++ K Y + M++Y
Sbjct: 62 MAKQDKLRYEREMKNY 77
>gi|390463605|ref|XP_003733066.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y ++ Y
Sbjct: 146 KKAAKLKEKYEMDIAAY 162
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444518919|gb|ELV12461.1| High mobility group protein B3 [Tupaia chinensis]
Length = 185
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+K + V D ++K G A+ GK+ +DPN PKRPPS FF+F EF + + +P
Sbjct: 64 AKVNKVHYDREMKDYGPAKGGKKK------RDPNAPKRPPSGFFLFCSEFCPKIRSNNPG 117
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + S+ EK P+ +A K K Y K++ DY
Sbjct: 118 I-SIGDVAKKLGEMWNNKSDSEKQPYNTKATKLK--YEKDVADY 158
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 14 SAYTFFVQTCREKHKKKNPEVPVKFAEFSKKGSERWKTMSGKEKSKFDEMAKVNKVHYDR 73
Query: 104 NMQDY 108
M+DY
Sbjct: 74 EMKDY 78
>gi|45935025|gb|AAS79547.1| At4g11080 [Arabidopsis thaliana]
gi|46367464|emb|CAG25858.1| hypothetical protein [Arabidopsis thaliana]
Length = 450
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP KPK+P SA+ ++ E R K NKSV V K GE+WK++SE++KAP+ + A+
Sbjct: 246 DPLKPKQPISAYLIYANERRAALK---GENKSVIEVAKITGEEWKNLSEEQKAPYDKMAK 302
Query: 96 KRKSDYNKNMQDYNK 110
K K Y + M+ Y +
Sbjct: 303 KNKEIYLQEMEGYKR 317
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S++F+F ++ RK E HP NN +TV KW + E+EK + +
Sbjct: 372 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINN---STVTAHITLKWMELGEEEKQVYNSK 428
Query: 94 AEKRKSDYNKNMQDYNK 110
A Y K +++YNK
Sbjct: 429 AAALMEAYKKEVEEYNK 445
>gi|355565174|gb|EHH21663.1| hypothetical protein EGK_04785, partial [Macaca mulatta]
Length = 201
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
K KDPN PKRPPSAFF+F E+R + K HP S+ VGK GE W + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVGKKPGEMWNDTAADDKHPY 144
>gi|322517988|gb|ADX06860.1| high mobility group protein B1 [Sciaenops ocellatus]
Length = 206
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 22 ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKS 81
AR GK+ K KDPN PKRPPSAFF+F EFR + K P ++ V K GE W
Sbjct: 80 ARGGKK----KKYKDPNAPKRPPSAFFIFCSEFRPKVKGEAPGL-TIGEVAKRLGEMWNG 134
Query: 82 MSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
+ ++K PF ++A K K Y K + Y ++
Sbjct: 135 TASEDKQPFEKKAAKLKEKYEKEVAAYRQK 164
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVE 92
K+ KP+ S++ F++ R++ K+ HP+ + + A K +WK+MS EK F +
Sbjct: 2 VKEQGKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSGRWKTMSSKEKGKFED 61
Query: 93 RAEKRKSDYNKNMQDY 108
A + K+ Y + M Y
Sbjct: 62 LARQDKARYEREMMSY 77
>gi|149726074|ref|XP_001503141.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 215
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+ + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS E+ F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEEGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|395753165|ref|XP_003779555.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
Length = 215
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KD N PKR PSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDLNAPKRTPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 VKLKEKYEKDIAAY 162
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ +++ K+ HP+ + + + K E+WK++S EK F +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEKKKKHPDASVNFSEFSKTCSERWKTISAKEKGKFEDMV 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|297665615|ref|XP_002811141.1| PREDICTED: high mobility group protein B4 [Pongo abelii]
Length = 189
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+DP P+RPPS+F +F ++ Q K +PN SV V KA G+ W + ++ EK P+ +RA
Sbjct: 88 RDPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSAATDLEKHPYEQRA 146
Query: 95 EKRKSDYNKNMQDYNKQ 111
++ Y + ++ Y KQ
Sbjct: 147 ALLRAKYFEELELYRKQ 163
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFEEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>gi|27881711|gb|AAH44715.1| MGC52578 protein [Xenopus laevis]
Length = 212
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
+ KG GKR KDPN PKRPPSAFF+F E R Q K P S+ K G
Sbjct: 79 IPPKGETKGKRK------KDPNAPKRPPSAFFIFCSEHRPQIKSETPGL-SIGDTAKKLG 131
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
E W + +K P ++A K K Y K++ Y
Sbjct: 132 ELWAEQTPKDKLPHEQKAAKLKEKYEKDVAAY 163
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP+ + + K E+WKSMS EK F + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSEFSKKCSERWKSMSAKEKGKFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KGDKARYEREMKTY 78
>gi|308238179|ref|NP_001184126.1| structure specific recognition protein 1 [Xenopus (Silurana)
tropicalis]
Length = 695
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ PKRP SA+ +++ R++ K +P S+ + K AGE WKSMS+D+K + RAE
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENPG-ISITDLSKKAGEIWKSMSKDKKEEWDRRAE 595
Query: 96 KRKSDYNKNMQDYN 109
+ K DY K M++YN
Sbjct: 596 EAKRDYEKAMKEYN 609
>gi|221221758|gb|ACM09540.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + +++S G+ K K KDPN PKRP SAFF+F +FR Q K P
Sbjct: 63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKVETPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GEKW +++ ++K P+ ++A K K Y K++ Y
Sbjct: 120 -SIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 161
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+W++MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|403300479|ref|XP_003940964.1| PREDICTED: high mobility group protein B1-like [Saimiri boliviensis
boliviensis]
Length = 215
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K G+ W + + ++K P+
Sbjct: 87 KKLKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGKMWNNTAANDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S+ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSCAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KVDKACYEREMKTY 78
>gi|449272347|gb|EMC82325.1| FACT complex subunit SSRP1 [Columba livia]
Length = 704
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK+MS++
Sbjct: 531 KKQPESKKGKDPNAPKRPMSAYMLWLNASRERIKSDHPG-ISITDLSKKAGELWKAMSKE 589
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE + DY K M++Y+
Sbjct: 590 KKEEWDRKAEDARRDYEKAMKEYS 613
>gi|410057780|ref|XP_003954279.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Pan
troglodytes]
Length = 709
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + DY K M++Y
Sbjct: 592 KKEEWDRKAEDARRDYEKAMKEY 614
>gi|444728196|gb|ELW68660.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S V K GE W + + D+K P+
Sbjct: 102 KKFKDPNAPKRPPSAFFLFCSEYRSKIKGEHP-GLSNGDVAKKLGEIWNNTAADDKQPYE 160
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 161 KKAAKLKEKYEKDIAAY 177
>gi|221220042|gb|ACM08682.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + +++S G+ K K KDPN PKRP SAFF+F +FR Q K P
Sbjct: 63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKVETPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GEKW +++ ++K P+ ++A K K Y K++ Y
Sbjct: 120 -SIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 161
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+WK+MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|148223673|ref|NP_001079576.1| HMG-X protein [Xenopus laevis]
gi|639691|dbj|BAA06440.1| HMG-X protein [Xenopus laevis]
Length = 212
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
+ KG GKR KDPN PKRPPSAFF+F E R Q K P S+ K G
Sbjct: 79 IPPKGETKGKRK------KDPNAPKRPPSAFFIFCSEHRPQIKSETPGL-SIGDTAKKLG 131
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
E W + +K P ++A K K Y K++ Y
Sbjct: 132 ELWAEQTPKDKLPHEQKAAKLKEKYEKDVAAY 163
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP+ + + K E+WKSMS EK F + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSDFSKKCSERWKSMSAKEKGKFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KGDKARYEREMKTY 78
>gi|225703820|gb|ACO07756.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 193
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN KRPPSAFF+F +FR + K HP S+ K G W S + +EK P+ ++A
Sbjct: 89 KDPNALKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNSSAAEEKKPYEKKA 147
Query: 95 EKRKSDYNKNMQDY 108
K Y+K++ Y
Sbjct: 148 ATLKEKYDKDIASY 161
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R + K+ P + + A K E+WK MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKQPEASVNFAEFSKKCSERWKPMSPKEKGTFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A++ K Y + M++Y
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|291392907|ref|XP_002712835.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 208
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+ + K HP S+ V K GE W + + +K P +A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDVAKKLGEMWNNTAAGDKQPCERKA 148
Query: 95 EKRKSDYNKNMQDYN 109
K K Y K + Y
Sbjct: 149 AKLKVKYEKGIAAYQ 163
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ ++ K+ HP+ + + + K E+WK+MS +K F + A
Sbjct: 5 DPKKPRGKMSSYTFFVQTCPEKHKKRHPDASVNFSEFSKKCSERWKTMSAKKKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKIY 78
>gi|170097113|ref|XP_001879776.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645179|gb|EDR09427.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 114
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 15 SKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKA 74
+K K K A + K KDPNKPKR SA+ F +++R + K +P+ VGK
Sbjct: 6 TKPKRKAAEKADKATSRKGKKDPNKPKRALSAYMFFSQDWRDRIKAENPDA-GFGEVGKL 64
Query: 75 AGEKWKSMSEDEKAPFVERA--EKRKSDYNKNMQDYNKQLADG 115
G KWK + E+EK P+VE+A +K +++ K D NK+ A G
Sbjct: 65 LGAKWKELDEEEKKPYVEQASKDKTRAEEAKAAYDSNKKSASG 107
>gi|62087576|dbj|BAD92235.1| high-mobility group box 1 variant [Homo sapiens]
Length = 176
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 89 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 147
Query: 92 ERAEKRKSDYNK 103
++A K K Y K
Sbjct: 148 KKAAKLKEKYEK 159
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 7 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 66
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 67 KADKARYEREMKTY 80
>gi|410351023|gb|JAA42115.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 712
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 536 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 594
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + DY K M++Y
Sbjct: 595 KKEEWDRKAEDARRDYEKAMKEY 617
>gi|296227498|ref|XP_002759405.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 215
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E+R + K HP S+ V K G+ W + + D+K P+ ++A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGKMWSNTAADDKQPYEKKAA 149
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|49250826|gb|AAH74541.1| Ssrp1 protein, partial [Xenopus (Silurana) tropicalis]
Length = 629
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ PKRP SA+ +++ R++ K +P S+ + K AGE WKSMS+D+K + RAE
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENPG-ISITDLSKKAGEIWKSMSKDKKEEWDRRAE 595
Query: 96 KRKSDYNKNMQDYN 109
+ K DY K M++YN
Sbjct: 596 EAKRDYEKAMKEYN 609
>gi|300122042|emb|CBK22616.2| unnamed protein product [Blastocystis hominis]
Length = 224
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGE 77
K+K + + T + K DP+KPK+P S + + E R+Q K+ +P K + + K GE
Sbjct: 4 KNKEPKTKENTKRGKKEVDPDKPKKPLSGYMRYCNEQREQVKKENPELK-LTEISKVLGE 62
Query: 78 KWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEEN 122
KWK +SE+EK P+ + E K Y+ M++Y K G A+ N
Sbjct: 63 KWKELSEEEKKPYQDAYEADKEKYDLQMEEYKKTHPTGKKNADPN 107
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN--NKSVATVGKAAGEKWKSM 82
DPNKPKRP S++ +F + R++ K +P+ NK + T+ G+ WK +
Sbjct: 105 DPNKPKRPLSSYIIFSNDKREEVKRKNPDMSNKEITTL---LGKMWKEL 150
>gi|297688746|ref|XP_002821837.1| PREDICTED: FACT complex subunit SSRP1 isoform 2 [Pongo abelii]
Length = 709
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + DY K M++Y
Sbjct: 592 KKEEWDRKAEDARRDYEKAMKEY 614
>gi|444707322|gb|ELW48604.1| High mobility group protein B4 [Tupaia chinensis]
Length = 189
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +P+ +V V KA+G+ W M+ EK P+ +RA
Sbjct: 91 DPQAPRRPPSSFILFCQDHYAQLKRENPS-WTVVQVAKASGKMWTVMTAVEKQPYEQRAA 149
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y + ++ Y KQ
Sbjct: 150 LLRARYQEELEVYRKQ 165
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S++ F+ +R +FKE PN + EKWKS+S+ EKA + A+
Sbjct: 10 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWKSISKHEKAKYEALAKLD 69
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 70 KARYQEEMMNY 80
>gi|403222987|dbj|BAM41118.1| high-mobility-group protein [Theileria orientalis strain Shintoku]
Length = 93
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 19 SKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGE 77
SK A+ GKRT K DPN PKR S++ F +E R + + +P+ K VATVGK G
Sbjct: 6 SKSAKKGKRTKK-----DPNAPKRALSSYMFFAKEKRNELIKENPDLAKDVATVGKLVGA 60
Query: 78 KWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
W S+ + EKAP+ + AE + Y + +Y K
Sbjct: 61 AWNSLDDSEKAPYEKLAEADRERYEREKLEYQK 93
>gi|221221148|gb|ACM09235.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + +++S G+ K K KDPN PKRP SAFF+F +FR Q K P
Sbjct: 63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GEKW +++ ++K P+ ++A K K Y K++ Y
Sbjct: 120 -SIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 161
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+W++MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|4507241|ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]
gi|397512296|ref|XP_003826485.1| PREDICTED: FACT complex subunit SSRP1 [Pan paniscus]
gi|426368405|ref|XP_004051198.1| PREDICTED: FACT complex subunit SSRP1 [Gorilla gorilla gorilla]
gi|730840|sp|Q08945.1|SSRP1_HUMAN RecName: Full=FACT complex subunit SSRP1; AltName:
Full=Chromatin-specific transcription elongation factor
80 kDa subunit; AltName: Full=Facilitates chromatin
transcription complex 80 kDa subunit; Short=FACT 80 kDa
subunit; Short=FACTp80; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; Short=hSSRP1; AltName: Full=T160
gi|184242|gb|AAA58660.1| high mobility group box [Homo sapiens]
gi|13477285|gb|AAH05116.1| Structure specific recognition protein 1 [Homo sapiens]
gi|119594140|gb|EAW73734.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|119594141|gb|EAW73735.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|123993967|gb|ABM84585.1| structure specific recognition protein 1 [synthetic construct]
gi|123998313|gb|ABM86758.1| structure specific recognition protein 1 [synthetic construct]
gi|410226712|gb|JAA10575.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410226714|gb|JAA10576.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262712|gb|JAA19322.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262714|gb|JAA19323.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305268|gb|JAA31234.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305270|gb|JAA31235.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351021|gb|JAA42114.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351025|gb|JAA42116.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 709
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + DY K M++Y
Sbjct: 592 KKEEWDRKAEDARRDYEKAMKEY 614
>gi|226479042|emb|CAX73016.1| structure specific recognition protein 1 [Schistosoma japonicum]
Length = 679
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
++T K + KDPN P RP SA+F++ E R++ ++ SVA V KA GE W++M +
Sbjct: 581 RQTKKQEKPKDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRNMDSE 640
Query: 86 EKAPFVERAEKRKSDYNKNMQDYNKQLA 113
K+ + R ++ K Y ++++ Y L+
Sbjct: 641 TKSTYQSRVDELKKKYQEDLRVYQSNLS 668
>gi|332252411|ref|XP_003275348.1| PREDICTED: FACT complex subunit SSRP1 [Nomascus leucogenys]
Length = 709
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + DY K M++Y
Sbjct: 592 KKEEWDRKAEDARRDYEKAMKEY 614
>gi|256080078|ref|XP_002576310.1| structure specific recognition protein [Schistosoma mansoni]
gi|350646026|emb|CCD59303.1| structure specific recognition protein,putative [Schistosoma
mansoni]
Length = 632
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
++T K K KDPN P RP SA+F++ E R++ + SVA V KAAGE W++M
Sbjct: 532 RQTKKQKKPKDPNAPTRPLSAYFLWFNENREKIAKNLGGQNSVAEVAKAAGEIWRNMDST 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 127
K+ + R ++ K Y ++++ Y L G N + SD S
Sbjct: 592 AKSSYQSRVDELKKKYQEDLRIYQSNL--GSNKEPDLSSDSS 631
>gi|221045048|dbj|BAH14201.1| unnamed protein product [Homo sapiens]
Length = 174
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNK 103
++A K K Y K
Sbjct: 146 KKAAKLKEKYEK 157
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|60552474|gb|AAH91486.1| SSRP1 protein, partial [Homo sapiens]
Length = 633
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + DY K M++Y
Sbjct: 592 KKEEWDRKAEDARRDYEKAMKEY 614
>gi|223646906|gb|ACN10211.1| High mobility group-T protein [Salmo salar]
gi|223672769|gb|ACN12566.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + +++S G+ K K KDPN PKRP SAFF+F +FR Q K P
Sbjct: 63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GEKW +++ ++K P+ ++A K K Y K++ Y
Sbjct: 120 -SIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 161
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+WK+MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|444728198|gb|ELW68662.1| High mobility group protein B1 [Tupaia chinensis]
Length = 132
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S V K GE W + + D+K P+ ++A
Sbjct: 16 KDPNAPKRPPSAFFLFCSEYRSKIKGEHP-GLSNGDVAKKLGEIWNNTAADDKQPYEKKA 74
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 75 AKLKEKYEKDIAAY 88
>gi|351705938|gb|EHB08857.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 176
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPS FF+F E+ + K HP S+ V K E W + + D+K P+ ++A
Sbjct: 28 KDPNAPKRPPSTFFLFCSEYCPKIKGEHP-GLSIGDVAKKLEEMWNNAAADDKQPYEKKA 86
Query: 95 EKRKSDYNKNMQDY 108
K K +Y K++ Y
Sbjct: 87 AKLKENYEKDIAAY 100
>gi|444729825|gb|ELW70228.1| High mobility group protein B1 [Tupaia chinensis]
Length = 141
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDP+ PKRPPSAFF+F E+R + K P + + V K GE W + + D K P+ + A
Sbjct: 28 KDPSAPKRPPSAFFLFCSEYRPEIKGERPG-RFIGDVAKRLGEMWNNTAADGKQPYEKNA 86
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 87 AKLKGKYEKDIAAY 100
>gi|354488105|ref|XP_003506211.1| PREDICTED: FACT complex subunit SSRP1-like isoform 1 [Cricetulus
griseus]
gi|354488107|ref|XP_003506212.1| PREDICTED: FACT complex subunit SSRP1-like isoform 2 [Cricetulus
griseus]
gi|344253527|gb|EGW09631.1| FACT complex subunit SSRP1 [Cricetulus griseus]
Length = 709
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K++++ K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|302851253|ref|XP_002957151.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
gi|300257558|gb|EFJ41805.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
Length = 94
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PK+P A+ F ++ R++ K +P SV +GK GE WK +SE++K ++
Sbjct: 16 KKVKDPNAPKKPLGAYMWFCKDMRERVKAENPGM-SVTDIGKRLGELWKEVSEEDKKKYL 74
Query: 92 ERAEKRKSDYNKNMQDYNKQ 111
++AE K YNK YNK+
Sbjct: 75 KQAEDDKERYNKEAAAYNKE 94
>gi|348566777|ref|XP_003469178.1| PREDICTED: high mobility group protein B2-like [Cavia porcellus]
Length = 211
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 PNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 151
Query: 97 RKSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 LKEKYEKDIAAY 163
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|148701877|gb|EDL33824.1| mCG140646 [Mus musculus]
Length = 207
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+ + K HP V V K GE W + + D+K P+ ++A
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-CVGDVAKKLGELWNNTAGDDKQPYEKKA 149
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 AKLKEKYEKDIAAY 163
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|335308835|ref|XP_003361389.1| PREDICTED: high mobility group protein B4-like [Sus scrofa]
Length = 198
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+DP P+RPPS+F +F ++ Q K +PN SVA V KA+ W + ++ +K P+ +RA
Sbjct: 90 RDPQAPRRPPSSFLLFCQDNYAQLKRENPN-WSVAQVAKASARMWSTTTDVDKQPYEQRA 148
Query: 95 EKRKSDYNKNMQDYNKQL 112
++ Y++ + Y KQ
Sbjct: 149 ALLRAKYHEELSVYQKQF 166
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ + +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 10 KPKANVSSYIHFLLNYSNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 98 KSDYNKNMQDY 108
K+ Y + M++Y
Sbjct: 70 KARYQEEMRNY 80
>gi|320168039|gb|EFW44938.1| hypothetical protein CAOG_02944 [Capsaspora owczarzaki ATCC 30864]
Length = 193
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 19 SKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEK 78
S G ++GK++ KDPN PKRPPSA+ F R + ++ +P++ ++ + GE
Sbjct: 87 STGGKSGKKS------KDPNAPKRPPSAYICFANAVRPELRKTYPSD-TMPAISTKIGEL 139
Query: 79 WKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
W+ +++D K P+ ++AE K + M Y
Sbjct: 140 WRQLTDDNKEPYNKQAEALKLKFQTEMAAY 169
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPNKPK+P +AF F R++ K +P K + + G+ W + E +K + A
Sbjct: 10 KDPNKPKKPTTAFMYFSNAMRERVKTQNPGLK-MTDIASVLGKLWGQLPEADKDKYQTMA 68
Query: 95 EKRKSDYNKNMQDYNKQLADG 115
K Y K M Y ++ G
Sbjct: 69 NSDKERYAKAMDGYVAPVSTG 89
>gi|449501868|ref|XP_004174468.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1
[Taeniopygia guttata]
Length = 705
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK+MS++
Sbjct: 531 KKQPESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPG-ISITDLSKKAGELWKAMSKE 589
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE + DY K M++Y+
Sbjct: 590 KKEEWDRKAEDARRDYEKAMKEYS 613
>gi|402875874|ref|XP_003901718.1| PREDICTED: high mobility group protein B2-like, partial [Papio
anubis]
Length = 248
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 127 PNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSQQSAKDKQPYEQKAAK 185
Query: 97 RKSDYNKNMQDY 108
K Y K++ Y
Sbjct: 186 LKEKYEKDIAAY 197
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ KE HP++ A K E+WK+MS EK+ F A
Sbjct: 40 DPNKPRGKMSSYAFFVQTCREEHKEKHPDSSVGFAEFSKKCSERWKTMSAKEKSKFEGMA 99
Query: 95 EKRKSDYNKNMQDY 108
+ K Y++ M++Y
Sbjct: 100 KSGKVRYDREMKNY 113
>gi|47124491|gb|AAH70148.1| High-mobility group box 4 [Homo sapiens]
Length = 112
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +P N SV V KA G+ W + ++ EK P+ +R
Sbjct: 15 DPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVA 73
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y + ++ Y KQ
Sbjct: 74 LLRAKYFEELELYRKQC 90
>gi|281350894|gb|EFB26478.1| hypothetical protein PANDA_002732 [Ailuropoda melanoleuca]
Length = 157
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNK 103
++A K K Y K
Sbjct: 146 KKAAKLKEKYEK 157
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444724258|gb|ELW64868.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K+ G+ K K PN KRPPSAFF+F E+R + K HP
Sbjct: 2 AKADKVRYEREMKTYIPPKGETK---KKFKGPNAAKRPPSAFFLFCSEYRPKIKGEHPGL 58
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + D+K P+ ++ K K Y K++ Y
Sbjct: 59 -SIGGVAKKLGEVWNNTAADDKQPYEKKPAKLKEKYEKDIAAY 100
>gi|384246550|gb|EIE20040.1| hypothetical protein COCSUDRAFT_83556 [Coccomyxa subellipsoidea
C-169]
Length = 140
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R K +A K + P+RP SA+ FM EFR+++K HP V+ VG AAGE W+S++ ++
Sbjct: 7 RVKKRRAKKPKDAPRRPKSAYMFFMAEFREKWKVDHPEVNRVSDVGVAAGEAWRSLTPEQ 66
Query: 87 KAPFVERAEKRKSDYNKNMQDY 108
KA + E++ K+ Y + +Y
Sbjct: 67 KAVYEEQSVGSKATYAAEIAEY 88
>gi|444732719|gb|ELW72994.1| High mobility group protein B1 [Tupaia chinensis]
Length = 289
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
DPN PKRPPSAFF+F E+R + K HP SV V K GE W + + DEK P+
Sbjct: 91 DPNSPKRPPSAFFLFCSEYRPKIKGEHP-GLSVGDVTKKLGEMWNNTAADEKQPY 144
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS +EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAEEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|45382755|ref|NP_990817.1| high mobility group protein B2 [Gallus gallus]
gi|123373|sp|P26584.2|HMGB2_CHICK RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|211927|gb|AAA48818.1| non-histone chromosomal protein [Gallus gallus]
Length = 207
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R + K HP S+ K GE W +K P+ ++A
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A + E+WK+MS EK F E A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KGDKARYDREMKNY 78
>gi|82952271|ref|XP_889413.1| PREDICTED: high mobility group protein B1-like isoform 2 [Mus
musculus]
gi|407263905|ref|XP_003945567.1| PREDICTED: high mobility group protein B1-like isoform 1 [Mus
musculus]
Length = 215
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F +R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL-SIGDVAKKRGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
K+ Y + M+ Y
Sbjct: 65 IADKARYEREMKTY 78
>gi|57232750|ref|NP_660206.2| high mobility group protein B4 [Homo sapiens]
gi|387912835|sp|Q8WW32.2|HMGB4_HUMAN RecName: Full=High mobility group protein B4
gi|189065201|dbj|BAG34924.1| unnamed protein product [Homo sapiens]
gi|208968483|dbj|BAG74080.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP +P+RPPS+F +F ++ Q K +P N SV V KA G+ W + ++ EK P+ +R
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y + ++ Y KQ
Sbjct: 148 LLRAKYFEELELYRKQC 164
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>gi|213513415|ref|NP_001133101.1| high mobility group protein B1 [Salmo salar]
gi|197631937|gb|ACH70692.1| high-mobility group box 1 [Salmo salar]
Length = 203
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRP SAFF+F +FR Q K P S+ V K GEKW +++ ++K P+ ++A
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 148 AKLKEKYEKDITAY 161
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+W++MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|291410693|ref|XP_002721624.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 215
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR PSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRTPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444722008|gb|ELW62714.1| High mobility group protein B1 [Tupaia chinensis]
Length = 224
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD + ++K+ G+ K KDPN PKRPPSAFF F E+R + K HP
Sbjct: 64 AKADKARYEREMKTYIPLKGETK---KKFKDPNAPKRPPSAFFFFCSEYRPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + D K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDVAKKLGEMWSNTAADAKQPYEKKAAKLKEKYEKDIAAY 162
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+P KP+ S++ F++ R++ K+ HP+ + + + K E+WK++S EK F + A
Sbjct: 5 NPTKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTVSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444526057|gb|ELV14266.1| High mobility group protein B1 [Tupaia chinensis]
Length = 166
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+ + K HP + V K GE W + DEK P+ ++A
Sbjct: 78 KDPNTPKRPPSAFFLFCSEYSPKIKGEHPGL-PIGDVTKKLGEMWNNTGADEKQPYEKKA 136
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 137 AKLKEKYEKDIAAY 150
>gi|392352276|ref|XP_003751165.1| PREDICTED: high mobility group protein B1 [Rattus norvegicus]
Length = 187
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNK 103
++A K K Y K
Sbjct: 146 KKAAKLKEKYEK 157
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|351707228|gb|EHB10147.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 709
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+T + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK M ++
Sbjct: 533 KKTVEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMPKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDHKAEDARREYEKAMKEY 614
>gi|196010223|ref|XP_002114976.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
gi|190582359|gb|EDV22432.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
Length = 694
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K K A+DPN PKRP S + +++++ R + K +P+ +VA V K AGE WKS+ E+EK
Sbjct: 545 KVKNARDPNLPKRPLSGYMLWLQKQRDRIKNENPSF-TVAEVAKKAGEIWKSLKEEEKKK 603
Query: 90 FVERAEKRKSDYNKNMQDYNKQ 111
+ + K K YNK+M +YN+Q
Sbjct: 604 WNNESAKLKEQYNKDMAEYNEQ 625
>gi|58268918|ref|XP_571615.1| nonhistone protein 6 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112618|ref|XP_774852.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818300|sp|P0CO25.1|NHP6_CRYNB RecName: Full=Non-histone chromosomal protein 6
gi|338818301|sp|P0CO24.1|NHP6_CRYNJ RecName: Full=Non-histone chromosomal protein 6
gi|50257500|gb|EAL20205.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227850|gb|AAW44308.1| nonhistone protein 6, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 116
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 13/98 (13%)
Query: 11 VGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT 70
V T KS + A KRT K DPNKPKR SA+ F++++R++ K +P +
Sbjct: 4 VSTKDSKKSTASDAKKRTKK-----DPNKPKRALSAYMFFVQDYRERIKTENP-EATFGD 57
Query: 71 VGKAAGEKWKSMSEDEKAPF-------VERAEKRKSDY 101
VGK G KW+ M+E+EK P+ ERA++ +DY
Sbjct: 58 VGKLLGIKWREMNENEKKPYEAKAKADKERADRENADY 95
>gi|478813|pir||S29857 nonhistone chromosomal protein HMG-1 - human
gi|184251|gb|AAA64970.1| HMG-1 [Homo sapiens]
Length = 216
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR PSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|126333240|ref|XP_001376238.1| PREDICTED: FACT complex subunit SSRP1 [Monodelphis domestica]
Length = 712
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPG-ISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDYN 109
+K + +AE+ K +Y K M++Y+
Sbjct: 592 KKEEWDRKAEEAKREYEKAMKEYS 615
>gi|119584724|gb|EAW64320.1| hCG26831 [Homo sapiens]
Length = 212
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR PSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|392340368|ref|XP_003754052.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392347889|ref|XP_003749961.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+ + K HP S+ V K GE W + + D+K P ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPCEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|18088957|gb|AAH21180.1| High-mobility group box 4 [Homo sapiens]
gi|312150396|gb|ADQ31710.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +P N SV V KA G+ W + ++ EK P+ +R
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y + ++ Y KQ
Sbjct: 148 LLRAKYFEELELYRKQC 164
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE P+ + EKW+S+S+ EKA + A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPSTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>gi|45360483|ref|NP_988904.1| high mobility group box 2 [Xenopus (Silurana) tropicalis]
gi|38181929|gb|AAH61601.1| high-mobility group box 2 [Xenopus (Silurana) tropicalis]
Length = 212
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R Q K P S+ K GE W + +K P+ ++A
Sbjct: 92 DPNAPKRPPSAFFLFCSEHRPQIKSESPGL-SIGDTAKKLGEMWSEQTPKDKLPYEQKAA 150
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 151 KLKEKYEKDVAAY 163
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F E A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEEMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 65 KNDKVRYEREMKTY 78
>gi|37779034|gb|AAP20177.1| high mobility group protein [Pagrus major]
Length = 200
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F +FR + K +P S+ K GE W S S +EK P+
Sbjct: 86 KRFKDPNAPKRPPSAFFLFCADFRPKVKGDYPGL-SIGDTAKKLGEMWNSSSAEEKQPYE 144
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y+K++ Y
Sbjct: 145 KKAAKLKEKYDKDIVAY 161
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + A K E+WK+MS EK F +
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKRCSERWKTMSPKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M++Y
Sbjct: 63 AKLDKVRYEREMKNY 77
>gi|110808604|gb|ABB22048.1| HMBG4 [Homo sapiens]
gi|119627858|gb|EAX07453.1| high-mobility group box 4 [Homo sapiens]
Length = 186
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +P N SV V KA G+ W + ++ EK P+ +R
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y + ++ Y KQ
Sbjct: 148 LLRAKYFEELELYRKQC 164
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>gi|26342222|dbj|BAC34773.1| unnamed protein product [Mus musculus]
Length = 215
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR PSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|426328852|ref|XP_004065350.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4
[Gorilla gorilla gorilla]
Length = 186
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +P N SV V KA G+ W + ++ EK P+ +R
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y + ++ Y KQ
Sbjct: 148 LLRAKYFEELELYRKQC 164
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>gi|403286915|ref|XP_003934714.1| PREDICTED: high mobility group protein B1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286917|ref|XP_003934715.1| PREDICTED: high mobility group protein B1-like isoform 2 [Saimiri
boliviensis boliviensis]
gi|403286919|ref|XP_003934716.1| PREDICTED: high mobility group protein B1-like isoform 3 [Saimiri
boliviensis boliviensis]
gi|403286921|ref|XP_003934717.1| PREDICTED: high mobility group protein B1-like isoform 4 [Saimiri
boliviensis boliviensis]
Length = 206
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPP AFF+F E+R + K +P S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEYPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
>gi|440900657|gb|ELR51738.1| High mobility group protein B1 [Bos grunniens mutus]
Length = 224
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPY 144
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|164661201|ref|XP_001731723.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
gi|159105624|gb|EDP44509.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
Length = 97
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%)
Query: 28 TAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEK 87
T + KA KDP PKRP SA+ F +++R K SV VG+ G KWK MS++EK
Sbjct: 13 TRRTKAKKDPAAPKRPLSAYMFFSQDWRDASKPRTLTQDSVCDVGRLLGTKWKEMSDEEK 72
Query: 88 APFVERAEK 96
P+VE A K
Sbjct: 73 KPYVEMASK 81
>gi|407263446|ref|XP_003084790.3| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 424
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPP AFF+F E+ + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 99 KDPNAPKRPPLAFFLFYSEYYPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 157
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 158 AKLKEKYEKDIAAY 171
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
P KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 13 HPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 72
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 73 KADKAHYERKMKTY 86
>gi|146218567|gb|AAI40014.1| High-mobility group box 1 [synthetic construct]
gi|146218571|gb|AAI40019.1| High-mobility group box 1 [synthetic construct]
gi|146327050|gb|AAI41845.1| High-mobility group box 1 [Homo sapiens]
Length = 215
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K + ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQHYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|46394418|gb|AAS91553.1| AmphiHMG1/2 [Branchiostoma belcheri tsingtauense]
Length = 222
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 20 KGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKW 79
KGA G+R K KDPN PKR SAFF++ + R + + AHP+ + V + K G++W
Sbjct: 81 KGAEGGRRKRK---KKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGDIAKILGKQW 136
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
K +S+ +KA + ++A+ K+ Y K + +Y +
Sbjct: 137 KEISDSDKAKYEKKAQTEKARYQKELAEYKR 167
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVER 93
KD NKPK SA+ F++E R++ ++ +PN + V T + +WK+M++DEK F
Sbjct: 3 KDKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMNDDEKKRFQAL 62
Query: 94 AEKRKSDYNKNMQDY 108
AE K Y ++M Y
Sbjct: 63 AEADKRRYEQDMAKY 77
>gi|395526464|ref|XP_003765383.1| PREDICTED: high mobility group protein B4 [Sarcophilus harrisii]
Length = 207
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP PKRPPS+FF+F E + K +P+ SV V K GE W SE +K P+ E+A
Sbjct: 92 DPKAPKRPPSSFFLFSREHYTKIKSDNPH-WSVVQVAKLLGEMWSKKSEQDKQPYEEKAA 150
Query: 96 KRKSDYNKNMQDYNKQLADGVN 117
+ ++ Y++ + Y G +
Sbjct: 151 RLRAKYHQELMTYRVNHGQGCS 172
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ R + KE PN + K EKWK++S+ EK+ + A
Sbjct: 7 KPKVNLSSYVHFLLNCRNKHKEQQPNAYINFKEFSKRCSEKWKTISKHEKSKYEAIARLD 66
Query: 98 KSDYNKNMQDY 108
K+ Y K M++Y
Sbjct: 67 KARYQKEMKNY 77
>gi|118344358|ref|NP_001072002.1| transcription factor protein [Ciona intestinalis]
gi|70570502|dbj|BAE06613.1| transcription factor protein [Ciona intestinalis]
Length = 263
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N+PKRP ++FF+F+ E RKQ + A V V K A E+WK M E+EK P+V+ +
Sbjct: 31 NRPKRPLTSFFLFLGEKRKQPQYA---GLRVYEVTKVAAEEWKQMDENEKQPYVDEMKAS 87
Query: 98 KSDYNKNMQDYNKQLAD 114
S +++ Q+Y QL+D
Sbjct: 88 FSTFHERYQEYLNQLSD 104
>gi|444725503|gb|ELW66067.1| Trem-like transcript 1 protein [Tupaia chinensis]
Length = 668
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PKR PS FF+F EFR + K +P
Sbjct: 561 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRRPSVFFLFCSEFRLKIKSTNP-G 614
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
S+ V K GE W ++S+ EK P++ K
Sbjct: 615 ISIGDVAKKLGEMWNNLSDSEKQPYITNGAK 645
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F E A+ K Y++
Sbjct: 511 SAYTFFVQTCREKHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 570
Query: 104 NMQDY 108
M+DY
Sbjct: 571 EMKDY 575
>gi|355766483|gb|EHH62519.1| hypothetical protein EGM_20887 [Macaca fascicularis]
Length = 198
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
D N PKRPPS FF+F +F + K +P S+ + K GE WK++++ EK P++ +A
Sbjct: 76 DSNAPKRPPSGFFLFSSKFCPKMKSTNPGI-SIGDMVKKLGEMWKNLNDSEKQPYITKAA 134
Query: 96 KRKSDYNKNMQD 107
K K Y K++ D
Sbjct: 135 KLKDKYEKDVAD 146
>gi|968888|dbj|BAA09924.1| HMG-1 [Homo sapiens]
Length = 215
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPY 144
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+R S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRRKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|405121060|gb|AFR95829.1| nonhistone protein 6 [Cryptococcus neoformans var. grubii H99]
Length = 116
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 13/98 (13%)
Query: 11 VGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT 70
V T KS + A KRT K DPNKPKR SA+ F++++R++ K +P +
Sbjct: 4 VSTKDSKKSTASDAKKRTKK-----DPNKPKRALSAYMFFVQDYRERIKAENPE-ATFGD 57
Query: 71 VGKAAGEKWKSMSEDEKAPF-------VERAEKRKSDY 101
VGK G KW+ M+E+EK P+ ERA++ +DY
Sbjct: 58 VGKLLGIKWREMNENEKKPYEAKAKADKERADRENADY 95
>gi|351715817|gb|EHB18736.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 165
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+ Q K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFYSEYCPQIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNK 103
++A K K Y K
Sbjct: 146 KKAAKLKEKYEK 157
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S + F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSLYAFFVQTCREEHKKKHPDASINFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|27502780|gb|AAH42502.1| Ssrp1 protein [Mus musculus]
Length = 711
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
+++++ K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 RKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|443897570|dbj|GAC74910.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 280
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+DP KPKRP SAFF F+ + R + PN + K GE+WK M+ D+KAP+ +RA
Sbjct: 203 RDPAKPKRPNSAFFEFLNDLRAS-ESVIPN---ITEFSKRGGERWKQMTPDQKAPYEQRA 258
Query: 95 EKRKSDYNKNMQDYN 109
+ Y ++++ YN
Sbjct: 259 LQALEQYKRDLEVYN 273
>gi|111154063|ref|NP_892035.2| FACT complex subunit SSRP1 [Mus musculus]
gi|209862973|ref|NP_001129553.1| FACT complex subunit SSRP1 [Mus musculus]
gi|110283006|sp|Q08943.2|SSRP1_MOUSE RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|74138726|dbj|BAE27178.1| unnamed protein product [Mus musculus]
gi|74144584|dbj|BAE27280.1| unnamed protein product [Mus musculus]
gi|74144625|dbj|BAE27299.1| unnamed protein product [Mus musculus]
gi|74177273|dbj|BAE34555.1| unnamed protein product [Mus musculus]
Length = 708
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
+++++ K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 RKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|260942113|ref|XP_002615355.1| hypothetical protein CLUG_04237 [Clavispora lusitaniae ATCC 42720]
gi|238850645|gb|EEQ40109.1| hypothetical protein CLUG_04237 [Clavispora lusitaniae ATCC 42720]
Length = 195
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK---EAHPNNKSVATVGKA 74
KSK + K K A+DPN PK+P +A+++F E+ +++ K EA + K V K
Sbjct: 40 KSKATLTSSSSVK-KMARDPNLPKKPLNAYWIFFEKEKERVKAELEAGKSEKPALDVSKT 98
Query: 75 AGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDE 134
E+WKSMS+++K+P+ + E+ + Y M +N Q DG N+ ++ + + + ++E
Sbjct: 99 LTERWKSMSDEQKSPYQKLYEEDRLRYQTEMTIFN-QNKDGENSTTISQQNNREPDASEE 157
Query: 135 DD 136
D+
Sbjct: 158 DE 159
>gi|294463267|gb|ADE77169.1| unknown [Picea sitchensis]
Length = 482
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDP+KPK P +AFF F E R E N +V + K GE+WK+M+++E+AP+ + A
Sbjct: 248 KDPSKPKHPVTAFFAFTNERRAALLE---ENHNVLQIAKILGEEWKNMTKEERAPYEQIA 304
Query: 95 EKRKSDYNKNMQDYNKQLADGVNAA 119
+ K Y M+ Y ++ A+ ++A
Sbjct: 305 AEAKEKYMGEMELYKQKKAEEASSA 329
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPN+PK+PP++F +F +E RK+ + P NN T+ KWK + EK +V+
Sbjct: 377 DPNRPKKPPTSFLLFSKETRKKLVQERPGVNN---TTINALISLKWKDLGTAEKQKWVDE 433
Query: 94 AEKRKSDYNKNMQDYNK 110
A Y K +++YNK
Sbjct: 434 AAGAMVQYKKEVEEYNK 450
>gi|432889764|ref|XP_004075350.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 194
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F +FR + K P S+ K GE W S S +EK P+
Sbjct: 86 KRFKDPNAPKRPPSAFFLFCADFRPKIKSESPGL-SIGDTAKKLGEMWNSSSAEEKQPYE 144
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y+K++ Y
Sbjct: 145 KKAAKLKEKYDKDIVAY 161
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVE 92
KDP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F +
Sbjct: 2 VKDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFED 61
Query: 93 RAEKRKSDYNKNMQDY 108
A++ K Y + M++Y
Sbjct: 62 MAKQDKVRYEREMKNY 77
>gi|260806967|ref|XP_002598355.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
gi|229283627|gb|EEN54367.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
Length = 223
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 20 KGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKW 79
KGA G+R K KDPN PKR SAFF++ + R + + AHP+ + V + K G +W
Sbjct: 82 KGAEGGRRKRK---KKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGEIAKILGRQW 137
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
K +S+ +KA + ++A+ K+ Y K + +Y +
Sbjct: 138 KEISDSDKAKYEKKAQTEKARYQKELAEYKR 168
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVER 93
KD NKPK SA+ F++E RK+ ++ +P+ + V T K E+WK+M++ EK F +
Sbjct: 4 KDKNKPKGKMSAYACFVQECRKEHEKKYPDKQVVFTEFSKKCAERWKTMNDGEKKRFQDL 63
Query: 94 AEKRKSDYNKNMQDY 108
AE K Y + M Y
Sbjct: 64 AETDKRRYEREMAKY 78
>gi|444313359|ref|XP_004177337.1| hypothetical protein TBLA_0A00160 [Tetrapisispora blattae CBS 6284]
gi|387510376|emb|CCH57818.1| hypothetical protein TBLA_0A00160 [Tetrapisispora blattae CBS 6284]
Length = 400
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGE 77
K+K + + A+ +DPN PKRP +A+ +F EE +++ K++ A V KA E
Sbjct: 152 KNKANKIHRTRAQKLKDRDPNLPKRPTNAYLLFCEETKEKIKQSGS-----ADVTKALAE 206
Query: 78 KWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
WK++ E E+ P+ + + + Y + MQ YN + G
Sbjct: 207 AWKNLDEQERKPYYKLYSEDRLRYQREMQIYNTKYGKG 244
>gi|355700906|gb|EHH28927.1| hypothetical protein EGK_09214, partial [Macaca mulatta]
Length = 263
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNK 103
++A K K Y K
Sbjct: 146 KKAAKLKEKYEK 157
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444730527|gb|ELW70909.1| High mobility group protein B1 [Tupaia chinensis]
Length = 238
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPP AFF+F E+R + + HP S+ K GE W + + ++K P+
Sbjct: 87 KKFKDPNAPKRPPLAFFLFCSEYRPKIEGEHPGL-SIGDTAKKLGELWNNTAANDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
+ A K K Y K++ Y
Sbjct: 146 KEAAKLKEKYEKDIAAY 162
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ ++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCWEEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KVDKTRYEREMKTY 78
>gi|355754606|gb|EHH58507.1| hypothetical protein EGM_08375 [Macaca fascicularis]
Length = 263
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNK 103
++A K K Y K
Sbjct: 146 KKAAKLKEKYEK 157
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|302497713|ref|XP_003010856.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
gi|291174401|gb|EFE30216.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
Length = 106
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGE 77
K K R KR + K KDPN PKR SA+ +F E R +E +PN + VGK GE
Sbjct: 3 KEKTTRKTKRGVE-KKKKDPNAPKRGLSAYMIFANEQRAAVREENPN-ITFGQVGKVLGE 60
Query: 78 KWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112
+WK++S+ ++ P+ E+A K Y YN +
Sbjct: 61 RWKALSDKQRVPYEEKAATDKQRYEDEKAAYNTNI 95
>gi|299741148|ref|XP_001834261.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
gi|298404577|gb|EAU87573.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
Length = 184
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 34/128 (26%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R A K+ KDP KPKR SA+ F +++R++ K +P+ VGK G KWK + E+E
Sbjct: 83 RAAASKSKKDPLKPKRALSAYMFFSQDWRERIKAENPDA-GFGEVGKLLGAKWKELDEEE 141
Query: 87 KAPFVE-------RAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEG 139
K P++E RAE KS Y+K ++ KS N G
Sbjct: 142 KKPYIELANKDKERAENEKSAYDKGIK---------------------KSRANS-----G 175
Query: 140 SGEEEDDD 147
SGEE++DD
Sbjct: 176 SGEEDEDD 183
>gi|8170740|gb|AAB19500.2| HMG1-related DNA-binding protein [Mus sp.]
Length = 708
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
+++++ K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 RKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|1806648|gb|AAB41544.1| structure-specific recognition protein 1 [Bos taurus]
Length = 460
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP SV + K AGE WK MS++
Sbjct: 284 KKPLEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMSKE 342
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 343 KKEEWDRKAEDARREYEKAMKEY 365
>gi|241952671|ref|XP_002419057.1| HMG-like DNA binding protein, putative; high mobility group
protein, putative; non-histone DNA-binding protein,
putative [Candida dubliniensis CD36]
gi|223642397|emb|CAX42640.1| HMG-like DNA binding protein, putative [Candida dubliniensis CD36]
Length = 312
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 15 SKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKA 74
SKL + + T + A+DP+ PKRP +A+ +F E +++ K+ PN + + K+
Sbjct: 123 SKLSNGPSDVASTTMGKQKARDPDLPKRPTNAYLIFCEMEKERIKQDDPN---ASDLSKS 179
Query: 75 AGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
E WKS+SE+ + P+ + E + Y + M +YN++ +G
Sbjct: 180 MTEAWKSLSEERRRPYYKLYEDDRIRYQREMAEYNQKKGNG 220
>gi|116283314|gb|AAH04848.1| Ssrp1 protein [Mus musculus]
Length = 633
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
+++++ K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 RKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|367043490|ref|XP_003652125.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL 8126]
gi|346999387|gb|AEO65789.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL 8126]
Length = 103
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
+ K + KDPN PKR SA+ F E R+ +E +P S VGK GE+WK++S+ +
Sbjct: 11 KVEKRRGKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSDKQ 69
Query: 87 KAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+AP+ +A K Y Q YN Q ADG
Sbjct: 70 RAPYEAKAAADKKRYEDEKQAYNAQ-ADG 97
>gi|441618163|ref|XP_003271355.2| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 206
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V D ++K G K KDPN PK P S FF+F EF + K P
Sbjct: 70 AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKMPQSGFFLFCSEFCLKIKSTKPGI 124
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++++ EK P++ +A K K Y K++ DY
Sbjct: 125 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLK--YEKDVADY 164
>gi|440911425|gb|ELR61099.1| High mobility group protein B3, partial [Bos grunniens mutus]
Length = 192
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+K + D ++K G AR GK+ KDP PKR PS +F EF + K HP
Sbjct: 66 AKVYKMHYDQEMKDYGPARGGKK-------KDPKAPKRLPSGCLLFCSEFHPKIKSTHPG 118
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W ++S+ EK P++ +A K K Y K++ D+
Sbjct: 119 I-SIRDVAKKLGEMWNNLSDSEKQPYINKAAKLKK-YEKDVADH 160
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAH---PNNKSVATVGKAAGEKWKSMSEDEKAP 89
A DP KPK A+ F++ R++ K+ + P N A K E+WK+MS EK+
Sbjct: 4 AISDPKKPKGKMCAYAFFVQMCREEHKKKNSEVPVN--FAEFSKKCSERWKTMSRKEKSK 61
Query: 90 FVERAEKRKSDYNKNMQDY 108
F E A+ K Y++ M+DY
Sbjct: 62 FDEMAKVYKMHYDQEMKDY 80
>gi|47551063|ref|NP_999708.1| high mobility group protein 1 homolog [Strongylocentrotus
purpuratus]
gi|729735|sp|P40644.1|HMGH_STRPU RecName: Full=High mobility group protein 1 homolog
gi|161521|gb|AAA91277.1| high mobility group 1 protein [Strongylocentrotus purpuratus]
Length = 200
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 5 RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+S D V D +++S G++ + + KDP+ PKR SAFF+F E R K HPN
Sbjct: 65 KSMRDKVRYDREMQSYKPPKGEKNKRRRRRKDPDAPKRNLSAFFIFSGENRAAIKSVHPN 124
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
SV + K +W++M+ EK PF + A K K Y K M +Y
Sbjct: 125 W-SVGDIAKELAVRWRAMTAGEKIPFDKGAAKDKERYIKAMAEY 167
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVER 93
+D +KP+ SA+ F+++ R + + HPN+ A K +WK++ E K F E+
Sbjct: 6 RDSSKPRGRMSAYAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWKALEEKGKGVFHEK 65
Query: 94 AEKRKSDYNKNMQDY 108
+ + K Y++ MQ Y
Sbjct: 66 SMRDKVRYDREMQSY 80
>gi|432113411|gb|ELK35821.1| FACT complex subunit SSRP1 [Myotis davidii]
Length = 709
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK+MS++
Sbjct: 533 KKPMEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKAMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|444705434|gb|ELW46861.1| FACT complex subunit SSRP1 [Tupaia chinensis]
Length = 704
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 528 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 586
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 587 KKEEWDRKAEDARREYEKAMKEY 609
>gi|309265997|ref|XP_003086707.1| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 433
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F + + K HP + S+ V K GE W + + D+K P+ ++A
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHP-DLSIGDVAKKLGEMWNNAAADDKQPYEKKA 147
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ FM+ RK+ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 3 DPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 62
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + ++ Y
Sbjct: 63 KADKARYKRKIKTY 76
>gi|426245460|ref|XP_004023562.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Ovis
aries]
Length = 703
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP SV + K AGE WK MS++
Sbjct: 527 KKPLEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMSKE 585
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE+ + +Y K M++Y
Sbjct: 586 KKEEWDRKAEEARREYEKAMKEY 608
>gi|119588737|gb|EAW68331.1| hCG1991922, isoform CRA_a [Homo sapiens]
gi|119588738|gb|EAW68332.1| hCG1991922, isoform CRA_a [Homo sapiens]
Length = 188
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF++ E+ + K P S V K GE W + + D+K P+ +R+
Sbjct: 39 KDPNAPKRPPSAFFLYFSEYGPKIKGERPGL-SFGDVAKKLGEMWNNTAADDKQPYEKRS 97
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 98 AKLKEKYEKDIAAY 111
>gi|62638360|ref|XP_574279.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|109460525|ref|XP_001074365.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K +Y K++ Y
Sbjct: 152 KEEYEKDIAAY 162
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|402853838|ref|XP_003891595.1| PREDICTED: high mobility group protein B4 [Papio anubis]
Length = 191
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +P+ SV V KA G+ W + ++ EK P+ +RA
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENPSW-SVVQVAKATGKMWSATTDLEKHPYEQRAA 149
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y + ++ Y KQ
Sbjct: 150 LLRAKYFEELERYRKQ 165
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 10 KPKANVSSYIHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 70 KARYQEEMMNY 80
>gi|344299407|ref|XP_003421377.1| PREDICTED: FACT complex subunit SSRP1 [Loxodonta africana]
Length = 709
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|155371817|ref|NP_001094511.1| FACT complex subunit SSRP1 [Bos taurus]
gi|151554654|gb|AAI49986.1| SSRP1 protein [Bos taurus]
gi|440894802|gb|ELR47155.1| FACT complex subunit SSRP1 [Bos grunniens mutus]
Length = 709
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP SV + K AGE WK MS++
Sbjct: 533 KKPLEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|109001746|ref|XP_001107984.1| PREDICTED: high mobility group protein B4-like [Macaca mulatta]
gi|67968844|dbj|BAE00779.1| unnamed protein product [Macaca fascicularis]
Length = 191
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +P+ SV V KA G+ W + ++ EK P+ +RA
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENPSW-SVVQVAKATGKMWSATTDLEKHPYEQRAA 149
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y + ++ Y KQ
Sbjct: 150 LLRAKYFEELELYRKQ 165
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 10 KPKANVSSYIHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 70 KARYQEEMMNY 80
>gi|23394916|gb|AAN31640.1|AF484963_1 high mobility group protein 1 [Biomphalaria glabrata]
Length = 215
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPKRPP+A+F+F+ ++R + +K + K AGE+W+S+S ++K P+ ++A
Sbjct: 96 DPNKPKRPPTAYFLFLADYRIRMANKGIEHKELL---KMAGEEWRSLSNEDKKPYEKKAL 152
Query: 96 KRKSDYNKNMQDYNK 110
+ Y M +Y K
Sbjct: 153 EESKKYESAMTEYRK 167
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KD NKPKR SA+F F+ + RK+ +A +A K A EKWK++S D+K PF
Sbjct: 14 KKVKDVNKPKRATSAYFFFLAQCRKEAAKAGKAPTKIAEFTKEASEKWKALSADKKKPFE 73
Query: 92 ERAEKRKSDYNKNMQDYNKQLAD 114
A K Y M Y + D
Sbjct: 74 AAAADDKRRYETEMAVYKGKSVD 96
>gi|410973949|ref|XP_003993410.1| PREDICTED: FACT complex subunit SSRP1 [Felis catus]
Length = 709
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|383872505|ref|NP_001244820.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|402893460|ref|XP_003909913.1| PREDICTED: FACT complex subunit SSRP1 [Papio anubis]
gi|355566511|gb|EHH22890.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
mulatta]
gi|355752113|gb|EHH56233.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
fascicularis]
gi|380784229|gb|AFE63990.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|383421069|gb|AFH33748.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|384949008|gb|AFI38109.1| FACT complex subunit SSRP1 [Macaca mulatta]
Length = 709
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|301774634|ref|XP_002922750.1| PREDICTED: FACT complex subunit SSRP1-like [Ailuropoda melanoleuca]
Length = 709
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|449685055|ref|XP_002156373.2| PREDICTED: high mobility group protein homolog TDP-1-like, partial
[Hydra magnipapillata]
Length = 218
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFK-EAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
K KDPNKPKR +A+F F+ +FR+Q K +A + + + AGEKW+SM++DEK +
Sbjct: 98 KMGKDPNKPKRCQTAYFFFLHDFREQMKGKALLEGEKIPAL---AGEKWRSMTDDEKKVY 154
Query: 91 VERAEKRKSDYNKNMQDY 108
+ +K K Y K M+++
Sbjct: 155 NDMVQKDKQRYEKAMEEW 172
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
K+P SA+ F+ ++R K+ V V K G W +M E+EKAP+ E+ K+
Sbjct: 28 KKPTSAYIYFVSDYRLVLKKKGKATNKVNEVAKMCGTAWNAMKENEKAPYYEKYNIDKAR 87
Query: 101 YNKNMQDYNKQL 112
Y K + +K++
Sbjct: 88 YLKEKEALDKKM 99
>gi|296218242|ref|XP_002755324.1| PREDICTED: FACT complex subunit SSRP1 [Callithrix jacchus]
Length = 709
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|440804471|gb|ELR25348.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 205
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R AK + KDPN PK+P SAFF F ++ R + K+ +P+ S +GK GE+W + DE
Sbjct: 92 RPAKKRKKKDPNAPKKPCSAFFHFSKKMRPRIKDENPDA-SFGQLGKIIGEQWSKLGADE 150
Query: 87 KAPFVERAEKRKSDYNKNMQDYN 109
+ F A K Y K M+DY
Sbjct: 151 RKEFETLAAADKERYAKEMKDYQ 173
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR +A+ +F +E R Q K HP VGK GE W ++ + +K + E A
Sbjct: 7 KDPNAPKRAMTAYMLFSQEKRTQIKTDHPTV-GFGQVGKLLGEAWAALPDGDKRKYNELA 65
Query: 95 EKRKSDYNKNMQDY 108
K K Y K Y
Sbjct: 66 AKDKIRYQKEAAQY 79
>gi|296479522|tpg|DAA21637.1| TPA: structure specific recognition protein 1 [Bos taurus]
Length = 709
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP SV + K AGE WK MS++
Sbjct: 533 KKPLEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|296224352|ref|XP_002758030.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390474708|ref|XP_003734829.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 215
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKR PS FF+F E+R + K HP S+ V K GE W + + D+K P+
Sbjct: 87 KKFKDPNAPKRTPSVFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 146 KKAAKLKEKYEKDIAAY 162
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|302926833|ref|XP_003054372.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
gi|256735313|gb|EEU48659.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
Length = 101
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 22 ARAGKR--TAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKW 79
A AGKR K + KDPN PKR SA+ F E R+ +E +P S VGK GE+W
Sbjct: 4 ADAGKRGKAVKKRGKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERW 62
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
K+++E ++AP+ +A K Y Q YN
Sbjct: 63 KALNEKQRAPYEAKAAADKKRYEDEKQAYN 92
>gi|345780695|ref|XP_851529.2| PREDICTED: high mobility group protein B4 [Canis lupus familiaris]
Length = 193
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +P SV V KA+G W S EK P+ +RA
Sbjct: 91 DPQAPRRPPSSFLIFCQDHYAQLKRENP-TWSVVQVAKASGRMWSVTSGAEKQPYEQRAA 149
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y + ++ Y +Q
Sbjct: 150 VLRARYQEELEVYRQQ 165
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 10 RPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 70 KARYQEEMMNY 80
>gi|343425092|emb|CBQ68629.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 290
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+DP KPKRP SAFF F+ + R + PN + K GE+WK MS ++KAP+ +RA
Sbjct: 213 RDPAKPKRPNSAFFEFLNDLRAS-EAVIPN---ITEFSKRGGERWKQMSAEQKAPYEQRA 268
Query: 95 EKRKSDYNKNMQDYN 109
+ Y ++++ YN
Sbjct: 269 LQALEQYKRDLEIYN 283
>gi|403254821|ref|XP_003920153.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Saimiri
boliviensis boliviensis]
Length = 826
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 650 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 708
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 709 KKEEWDRKAEDARREYEKAMKEY 731
>gi|205780950|sp|B2RPK0.1|HGB1A_HUMAN RecName: Full=Putative high mobility group protein B1-like 1;
AltName: Full=High mobility group protein B1 pseudogene
1; AltName: Full=Putative high mobility group protein
1-like 1; Short=HMG-1L1
gi|187950665|gb|AAI37483.1| High-mobility group box 1-like 1 [Homo sapiens]
gi|187953577|gb|AAI37484.1| High-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+ + K HP S+ V K GE W + + D+K P ++A
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPGEKKA 148
Query: 95 EKRKSDYNKNMQDYN 109
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAYQ 163
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ H + + + + E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKTHYERQMKTY 78
>gi|335281869|ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa]
Length = 709
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPTEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|345783817|ref|XP_859953.2| PREDICTED: FACT complex subunit SSRP1 isoform 4 [Canis lupus
familiaris]
Length = 711
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 535 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWKGMSKE 593
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 594 KKEEWDRKAEDARREYEKAMKEY 616
>gi|149628522|ref|XP_001521757.1| PREDICTED: high mobility group protein B2-like, partial
[Ornithorhynchus anatinus]
Length = 106
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A
Sbjct: 40 DPNAPKRPPSAFFLFCSEQRPKIKSEHPGL-SIGDTAKKLGELWSEQSAKDKLPYEQKAA 98
Query: 96 KRKSDYNK 103
K K Y K
Sbjct: 99 KLKEKYEK 106
>gi|109076196|ref|XP_001085665.1| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 321
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 207 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 265
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 266 KEKYEKDIAAY 276
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 119 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 178
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 179 KSDKARYDREMKNY 192
>gi|395858039|ref|XP_003801382.1| PREDICTED: FACT complex subunit SSRP1 [Otolemur garnettii]
Length = 710
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 19 SKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEK 78
SK ++ K+ + K +DPN PKRP SA+ +++ R++ K HP S+ + K AGE
Sbjct: 526 SKDRKSRKKPMEVKKGRDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEI 584
Query: 79 WKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
WK MS+++K + +AE + +Y K M++Y
Sbjct: 585 WKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|401412468|ref|XP_003885681.1| High mobility group protein 1, related [Neospora caninum Liverpool]
gi|325120101|emb|CBZ55655.1| High mobility group protein 1, related [Neospora caninum Liverpool]
Length = 98
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 16 KLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKA 74
K+ KGA K+ K KDPN PK+P S++ F ++ R + + P+ KS + VGK
Sbjct: 5 KVTKKGAEGKKKRVK----KDPNAPKKPLSSYMFFAKDKRAEILKKQPSLKSDIGKVGKM 60
Query: 75 AGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
GE+W +S +K + ++AE+ K Y + M YNK+
Sbjct: 61 IGEEWAKLSSSQKLTYQKKAEQEKIRYQREMSLYNKK 97
>gi|183212221|gb|ACC54773.1| high-mobility group box 1 beta [Xenopus borealis]
Length = 95
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD V + ++K+ G+ K KDPN PKRPPSAFF+F +FR + K +P +
Sbjct: 12 AKADKVRYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSDFRPKIKGEYPGS 68
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPF 90
++ + K GE W + + D+K P+
Sbjct: 69 -TIGDIAKKLGEMWNNTATDDKLPY 92
>gi|401402785|ref|XP_003881334.1| high mobility group protein, related [Neospora caninum Liverpool]
gi|325115746|emb|CBZ51301.1| high mobility group protein, related [Neospora caninum Liverpool]
Length = 94
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKA 88
K KA KDPN PKRP SAF F ++ R++ +P KS +A VGK GE W +S+ +K
Sbjct: 10 KTKAKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGKLSDAQKK 69
Query: 89 PFVERAEKRKSDYNKNMQDYNK 110
P+ +A K+ Y + M Y K
Sbjct: 70 PYESKAVADKARYEREMIAYKK 91
>gi|281343903|gb|EFB19487.1| hypothetical protein PANDA_011742 [Ailuropoda melanoleuca]
Length = 607
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 516 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 574
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 575 KKEEWDRKAEDARREYEKAMKEY 597
>gi|20138433|sp|Q9UGV6.1|HMGLX_HUMAN RecName: Full=Putative high mobility group protein 1-like 10;
Short=HMG-1L10
Length = 211
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR PSAFF+F +R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 90 KDPNAPKRTPSAFFLFCSAYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S+ F + R+ K+ HP+ + +++ K E+WK+MS EK F + A
Sbjct: 5 DPKKLRGKMSSHAFFGQTCREAHKKKHPDASVNLSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKAHYEREMKTY 78
>gi|157832121|pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
gi|157832122|pdb|1NHN|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
Length = 81
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A K
Sbjct: 3 NAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 61
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 62 KEKYEKDIAAY 72
>gi|354470970|ref|XP_003497717.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 215
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+ + K HP
Sbjct: 64 AKADKARYEREMKTYIPPKGETK---KKFKDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ V K GE W + + ++K P+ ++A K K + K + Y
Sbjct: 121 -SIGDVAKKLGELWNNTAAEDKQPYGKKAAKLKEKHEKGIAAY 162
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKRKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|71027705|ref|XP_763496.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350449|gb|EAN31213.1| high mobility group protein, putative [Theileria parva]
Length = 94
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSM 82
AGK++ + K KDPN PKR S++ F +E R + +P+ + VA VGK G W S+
Sbjct: 9 AGKKSKRAK--KDPNAPKRALSSYMFFAKEKRAELVRENPDLARDVAAVGKLVGAAWNSL 66
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDYNK 110
E EKAP+ + AE ++ Y K YNK
Sbjct: 67 DESEKAPYEKLAEADRARYEKEKAAYNK 94
>gi|71662243|ref|XP_818131.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70883364|gb|EAN96280.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 15 SKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKA 74
S+ K G KR AKD N PKR SA+F F+ +FRK+ HP+ SV KA
Sbjct: 180 SEYKKSGGTEYKRGGGKVKAKDENAPKRSMSAYFFFVSDFRKK----HPDL-SVTETSKA 234
Query: 75 AGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
AG WK++S+D K P+ A+K K Y + M
Sbjct: 235 AGAAWKALSDDMKKPYEAMAQKDKERYQREM 265
>gi|71019847|ref|XP_760154.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
gi|46099871|gb|EAK85104.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
Length = 286
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+DP KPKRP SAFF F+ + R + PN + K GE+WK MS ++KAP+ +RA
Sbjct: 209 RDPAKPKRPNSAFFEFLNDLRAS-EAVIPN---ITEFSKRGGERWKQMSAEQKAPYEQRA 264
Query: 95 EKRKSDYNKNMQDYN 109
+ Y ++++ YN
Sbjct: 265 LQALEQYKRDLELYN 279
>gi|355757371|gb|EHH60896.1| hypothetical protein EGM_18788, partial [Macaca fascicularis]
Length = 189
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 12 GTDSKLKSKGARAGKRTAKPKA-----AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK 66
G DS + R K PKA KDPN PKRPP AFF+F E + KE HP
Sbjct: 58 GEDSMDMAHYEREMKIYIPPKAETKMKFKDPNAPKRPPLAFFMFSSEDCPKIKE-HPGL- 115
Query: 67 SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
SV+ V K GE W +ED+K P+ ++A K K Y K++ +
Sbjct: 116 SVSDVAKKLGEMWNYTAEDDKHPYEKKAVKLKEKYEKDIAAF 157
>gi|29290594|emb|CAD83017.1| bM168F16.1 (novel protein similar to high-mobility group box 1
(Hmgb1)) [Mus musculus]
gi|148699130|gb|EDL31077.1| mCG49535 [Mus musculus]
Length = 208
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR PSAFF+F E+ + K HP S+ V K GE W + + +K P ++A
Sbjct: 90 KDPNAPKRSPSAFFLFCSEYCHKIKGEHPGL-SIGVVAKKLGEMWINTAVYDKQPCEKKA 148
Query: 95 EKRKSDYNKNM 105
K K Y K++
Sbjct: 149 TKLKEKYEKDI 159
>gi|67968790|dbj|BAE00752.1| unnamed protein product [Macaca fascicularis]
Length = 191
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP P+RPPS+F +F ++ Q K +P+ SV V KA G+ W + ++ EK P+ +RA
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENPSW-SVVQVAKATGKMWSATADLEKHPYEQRAA 149
Query: 96 KRKSDYNKNMQDYNKQ 111
++ Y + ++ Y KQ
Sbjct: 150 LLRAKYFEELELYRKQ 165
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 10 KPKANVSSYIHFLLNYRNEFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 70 KARYQEEMMNY 80
>gi|297303892|ref|XP_002806292.1| PREDICTED: high mobility group-T protein-like [Macaca mulatta]
Length = 159
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPP AFF+F E + KE HP SV+ V K GE W +ED+K P+ ++A
Sbjct: 55 KDPNAPKRPPLAFFMFSSEDCPKIKE-HPG-LSVSDVAKKLGEMWNYTAEDDKHPYEKKA 112
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ +
Sbjct: 113 VKLKEKYEKDIAAF 126
>gi|444517137|gb|ELV11379.1| High mobility group protein B1 [Tupaia chinensis]
Length = 204
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E+ + K HP S+ V K GE W + + D K P+ ++A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDVAKRLGELWNNTAADGKQPYEKKAA 149
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S++ F++ F+++ K+ HP+ + S + K EKWK+MS EK F +RA
Sbjct: 5 DPKKRRSIMSSYAFFVQTFQEEHKKQHPDASVSFSEFPKKCSEKWKAMSAKEKGKFEDRA 64
Query: 95 EKRKSDYNKNMQ 106
+ K+ Y ++M+
Sbjct: 65 KADKASYERDMK 76
>gi|417404085|gb|JAA48818.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 709
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPMEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|444706303|gb|ELW47646.1| Glycine/arginine-rich protein 1 [Tupaia chinensis]
Length = 485
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E+R + KE HP S+ + K GE W S + D P ++A
Sbjct: 35 KDPNAPKRPPSAFFLFCSEYRPKIKE-HP-GLSIGDIAKKLGELWTSTAADGTQP-RKKA 91
Query: 95 EKRKSDYNKNMQDY 108
K + + K + Y
Sbjct: 92 AKLEEKHGKAIAAY 105
>gi|390348780|ref|XP_003727081.1| PREDICTED: high mobility group B protein 13-like
[Strongylocentrotus purpuratus]
Length = 238
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
P KPKRP ++FF F E R + PN SV V K G W+ +SEDEK + E
Sbjct: 51 PAKPKRPLTSFFQFTSEQRPKLTAMEPN-LSVTDVTKRIGAMWRDLSEDEKEVYRLDFES 109
Query: 97 RKSDYNKNMQDYNKQLAD 114
R+ Y + M+DY +L D
Sbjct: 110 RREKYTEEMEDYRSRLTD 127
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKS---VATVGKAAGEKWKSMSEDEKAPFVERA 94
NKPKRPP+ + +F+ + QF + ++ + K A W S+ + EK + E A
Sbjct: 157 NKPKRPPTGYSLFI---KAQFNQQPAGGRTREEIQAQFKEAASIWHSLPDHEKQQYHEEA 213
Query: 95 EKRKSDYNKNMQDYNKQL-ADGVNA 118
Y + M+++ +++ +G++
Sbjct: 214 SLLTETYREEMEEWKRKMEGEGIST 238
>gi|85000895|ref|XP_955166.1| high-mobility-group (HMG) protein [Theileria annulata strain
Ankara]
gi|65303312|emb|CAI75690.1| high-mobility-group (HMG) protein, putative [Theileria annulata]
Length = 94
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSM 82
AGK++ + K KDPN PKR S++ F +E R + +P+ + VA VGK G W S+
Sbjct: 9 AGKKSKRAK--KDPNAPKRALSSYMFFAKEKRAELVRDNPDLARDVAAVGKLVGAAWNSL 66
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDYNK 110
E EKAP+ + AE ++ Y K YNK
Sbjct: 67 DESEKAPYEKLAEADRARYEKEKAAYNK 94
>gi|413923117|gb|AFW63049.1| putative phototropic-resoponsive NPH3 family protein [Zea mays]
Length = 425
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 32/51 (62%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAA 75
G K K +KPKRP SAFFVFM EFR++++ HP NKSVA V A
Sbjct: 274 GGVACKRKKVTTNSKPKRPTSAFFVFMSEFRQEYQVQHPGNKSVAAVSHLA 324
>gi|327296079|ref|XP_003232734.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS 118892]
gi|326465045|gb|EGD90498.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS 118892]
Length = 102
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 22 ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKS 81
AR KR + K KDPN PKR SA+ +F E R +E +PN + VGK GE+WK+
Sbjct: 8 ARKTKRGVE-KKKKDPNAPKRGLSAYMIFANEQRAAVREENPNI-TFGQVGKVLGERWKA 65
Query: 82 MSEDEKAPFVERAEKRKSDYNKNMQDYN 109
+S+ ++ P+ E+A K Y YN
Sbjct: 66 LSDKQRVPYEEKAATDKQRYEDEKAAYN 93
>gi|116206850|ref|XP_001229234.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183315|gb|EAQ90783.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 96
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGE 77
K+ +R+GK K + KDPN PKR SA+ F E R +E +P S VGK GE
Sbjct: 3 KAAKSRSGKAEKKTRQKKDPNAPKRGLSAYMFFANEQRDNVREENPGV-SFGQVGKILGE 61
Query: 78 KWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
+WK++S+ ++AP+ +A K Y Q YN
Sbjct: 62 RWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 93
>gi|296202119|ref|XP_002748265.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390463329|ref|XP_003733013.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K + ++A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEIWNNTAADDKQHYEKKAA 149
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y K M+ Y
Sbjct: 65 KADKARYKKEMKTY 78
>gi|19114226|ref|NP_593314.1| High-mobility group non-histone chromatin protein (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74627097|sp|P87057.1|NHP6_SCHPO RecName: Full=Non-histone chromosomal protein 6
gi|2058376|emb|CAB08172.1| High-mobility group non-histone chromatin protein (predicted)
[Schizosaccharomyces pombe]
Length = 108
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R AK KDPN PKR SAF F E R++ K +P+ + +G G++WK ++ E
Sbjct: 3 RAAKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPD-ATFGQLGSLLGKRWKELTSTE 61
Query: 87 KAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+ P+ E+A + K Y + ++Y+ +LA+G
Sbjct: 62 REPYEEKARQDKERYERERKEYDTKLANG 90
>gi|358391632|gb|EHK41036.1| hypothetical protein TRIATDRAFT_259074 [Trichoderma atroviride IMI
206040]
Length = 101
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 22 ARAGKRTAK---PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEK 78
A +GKR AK +A KDPN PKR SA+ F E R+ +E +P S VGK GE+
Sbjct: 4 AASGKRGAKDTKKRAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGER 62
Query: 79 WKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
WK++++ ++AP+ +A K Y Q YN
Sbjct: 63 WKALNDKQRAPYEAKAAADKKRYEDEKQAYN 93
>gi|390348241|ref|XP_784026.3| PREDICTED: uncharacterized protein LOC578784 [Strongylocentrotus
purpuratus]
Length = 273
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 10/96 (10%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV---ATVGKAAGEKWKSMS 83
R + + +DP+KPK+PP+A+F F+ +FR+Q K K++ + + GE+W ++
Sbjct: 96 RISVYRKVRDPDKPKKPPTAYFYFLTDFREQMK-----GKTIEKGRRLTEICGEEWNKLT 150
Query: 84 EDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
+++K P++ER Y M+D+ K+ G+ AA
Sbjct: 151 DEQKKPYLERVALEYKTYQGKMEDWRKK--KGLVAA 184
>gi|221485710|gb|EEE23991.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221502922|gb|EEE28632.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 651
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPF 90
+A KDPN PK+P S++ F ++ R + + P+ KS + VGK GE+W +S +K +
Sbjct: 570 RAKKDPNAPKKPLSSYMFFAKDKRAEILKKQPSLKSDIGKVGKMIGEEWAKLSSSQKMTY 629
Query: 91 VERAEKRKSDYNKNMQDYNKQ 111
++AE+ K Y + M YNK+
Sbjct: 630 QKKAEQEKIRYQREMSLYNKK 650
>gi|156057705|ref|XP_001594776.1| hypothetical protein SS1G_04584 [Sclerotinia sclerotiorum 1980]
gi|154702369|gb|EDO02108.1| hypothetical protein SS1G_04584 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 554
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 12 GTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATV 71
G D+K G KR + D N P+RPPSA+ +F + R+ K N S +
Sbjct: 89 GRDAKDGGSGPHGAKRKYRRHPKTDENAPERPPSAYVIFSNKMREDLKG---RNLSFTEI 145
Query: 72 GKAAGEKWKSMSEDEKAPFVERAEKRKSDYN---------KNMQDYNKQLAD 114
K GE W+++S EK P+ + A K K YN ++ +DY++ LAD
Sbjct: 146 AKLVGENWQNLSPAEKEPYEQSAYKAKERYNNELAEYKKTQSFKDYSQYLAD 197
>gi|431918516|gb|ELK17735.1| 182 kDa tankyrase-1-binding protein [Pteropus alecto]
Length = 2600
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ + K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS++
Sbjct: 533 KKPTEVKKGKDPNAPKRPMSAYMLWLNASREKIKLDHP-GISITDLSKKAGEIWKGMSKE 591
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
+K + +AE + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614
>gi|395830755|ref|XP_003788484.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 135
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN P RPPSAFF+F E+ + K HP S+ V K GE W + D+K P+ ++A
Sbjct: 16 KDPNAPNRPPSAFFLFCSEYHPEIKGEHP-GLSIGDVAKKLGEMWNYTAVDDKQPYEKKA 74
Query: 95 EKRKSDYNKNM 105
K K Y K++
Sbjct: 75 AKLKEKYEKDI 85
>gi|410044942|ref|XP_001169551.3| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 269
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF++ E+ + K P S+ K GE W + + D+K P+
Sbjct: 114 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGL-SIGDAAKKLGEMWNNTAADDKQPYE 172
Query: 92 ERAEKRKSDYNKNMQDY 108
+R+ K K Y K++ Y
Sbjct: 173 KRSAKLKEKYEKDIAAY 189
>gi|444513275|gb|ELV10301.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRP AFF+F E+R Q K HP S+ V K GE W + + D K P+
Sbjct: 86 KKFKDPNAPKRPLLAFFLFCSEYRPQIKGEHP-GLSIGDVAKKLGEMWNNTAADGKQPYE 144
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 145 KKAAKLKEKYEKDIAAY 161
>gi|392343504|ref|XP_003754904.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|392356039|ref|XP_003752197.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN P++PPS+F +F + + KE HP N +VA V KAA W SE +K+ +VE+A
Sbjct: 89 DPNAPRKPPSSFLLFSMDHFDEIKEQHP-NWTVAQVAKAAKRMWSRCSEVDKSHYVEKAA 147
Query: 96 KRKSDYNKNMQDYNKQLADG 115
++ Y + + Y Q G
Sbjct: 148 ILRAKYLEEREAYYHQCQRG 167
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S + FM +FR Q +E PN+ T + EKW+++SE EK + A++
Sbjct: 8 RPKVNVSPYVHFMMDFRNQMREQQPNSYYDFTEFSRKCSEKWRTISEQEKRKYEALAKRD 67
Query: 98 KSDYNKNMQDYN 109
+ Y + M++Y
Sbjct: 68 RDRYQREMRNYT 79
>gi|426251515|ref|XP_004019467.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|426230076|ref|XP_004009107.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|62647362|ref|XP_575506.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346835|ref|XP_001060814.2| PREDICTED: high mobility group protein B1-like isoform 1 [Rattus
norvegicus]
Length = 214
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN KRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P ++A
Sbjct: 90 KDPNALKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWTNTAVDDKQPCEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 149 AKLKEKYEKDIAAY 162
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
P KP+ S+ F++ R++ K+ H N + + + K E+WK+MS EK F + A+
Sbjct: 6 PKKPRGKMSSHAFFVQTCREEHKKKHLNASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 96 KRKSDYNKNMQDY 108
K+ Y + M+ Y
Sbjct: 66 ADKARYEREMKTY 78
>gi|237842875|ref|XP_002370735.1| high mobility group protein, putative [Toxoplasma gondii ME49]
gi|211968399|gb|EEB03595.1| high mobility group protein, putative [Toxoplasma gondii ME49]
Length = 644
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPF 90
+A KDPN PK+P S++ F ++ R + + P KS + VGK GE+W +S +K +
Sbjct: 563 RAKKDPNAPKKPLSSYMFFAKDKRAEILKKQPTLKSDIGKVGKMIGEEWAKLSSSQKMTY 622
Query: 91 VERAEKRKSDYNKNMQDYNKQ 111
++AE+ K Y + M YNK+
Sbjct: 623 QKKAEQEKIRYQREMSLYNKK 643
>gi|296810682|ref|XP_002845679.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
gi|238843067|gb|EEQ32729.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
Length = 103
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 22 ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKS 81
AR K K KDPN PKR SA+ +F E R +E +PN + VGK GE+WK+
Sbjct: 8 ARKAKGRGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNI-TFGQVGKVLGERWKA 66
Query: 82 MSEDEKAPFVERAEKRKSDYNKNMQDYN 109
+S+ ++ P+ E+A K Y YN
Sbjct: 67 LSDKQRVPYEEKAATDKQRYEDEKAAYN 94
>gi|291413749|ref|XP_002723129.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 219
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATV--GKAAGEKWKSMSEDEKAPFVER 93
DPNKP+ S++ F++ R++ K HP++ SV V K E+WK+MS E + F +
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKRKHPDS-SVNFVEFSKKCSERWKTMSAKENSKFEDM 63
Query: 94 AEKRKSDYNKNMQDY 108
A+ K+ Y++ M++Y
Sbjct: 64 AKSDKARYDREMKNY 78
>gi|225706046|gb|ACO08869.1| High mobility group-T protein [Osmerus mordax]
Length = 204
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F +FR + K P ++ V K GE W ++K P+ ++A
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETPGL-TIGDVAKKLGEMWNGTCAEDKQPYEKKA 147
Query: 95 EKRKSDYNKNMQDYNKQLADGVNA 118
K K Y K++ Y + GV+
Sbjct: 148 AKLKEKYEKDIAAYRAKGKVGVSV 171
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+WK+MS EK F +
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M++Y
Sbjct: 63 AKLDKVRYEREMKNY 77
>gi|413949487|gb|AFW82136.1| hypothetical protein ZEAMMB73_682960 [Zea mays]
Length = 488
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 50/112 (44%), Gaps = 34/112 (30%)
Query: 21 GARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATV--------- 71
G AGKR K KPK PPS FFVFM FR++++ HP NKSVAT+
Sbjct: 214 GCVAGKR----KKVATSGKPKHPPSTFFVFMSGFRQEYQVQHPGNKSVATMSSLFVLVDQ 269
Query: 72 ------GKAAGEKWKS---------------MSEDEKAPFVERAEKRKSDYN 102
G+ A W + +ED+KA F + E K+ +N
Sbjct: 270 DTCGGEGQLALALWATHWLKTLTTLRFTRNDFTEDDKATFNDFTEDNKATFN 321
>gi|47227840|emb|CAG09003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 199
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F EFR + K +P ++ K GE W S + ++K P+
Sbjct: 86 KRFKDPNAPKRPPSAFFLFCAEFRPKVKSENPGL-TIGDTAKKLGEMWNSKTAEDKQPYE 144
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y+K++ Y
Sbjct: 145 KKAAKLKEKYDKDIVAY 161
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP+ + + A K E+WK+MS EK F +
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A++ K Y + M++Y
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|229368114|gb|ACQ59037.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 206
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R K K KDPN PKRPPSAFF+F E+R + K P ++ V K GE W + ++
Sbjct: 81 RGIKKKKFKDPNAPKRPPSAFFIFCAEYRPKVKGETPGA-TIGDVAKRLGEMWNGTASED 139
Query: 87 KAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+ PF ++A K K Y K + Y + G
Sbjct: 140 RQPFEKKAAKLKEKYEKEVAAYRAKTKPG 168
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVE 92
K+ KPK S++ F++ R++ K+ HP + + + K E+WK+MS EK F +
Sbjct: 2 VKELGKPKGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSLKEKGKFED 61
Query: 93 RAEKRKSDYNKNMQDY 108
A + K+ Y + M Y
Sbjct: 62 LARQDKARYEREMMSY 77
>gi|291395415|ref|XP_002714100.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R + + H + S+ K GE W S ++ P+ ++A
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIRSEH-SGLSIGDTAKKLGEMWSEQSAKDEQPYEQKAA 149
Query: 96 KRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 150 KLKEKYEKDIAAY 162
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPN+P+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNEPRGKMSSYAFFVQTCREEHKKKHPDSSINFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKACYDREMKNY 78
>gi|444716453|gb|ELW57303.1| High mobility group protein B1 [Tupaia chinensis]
Length = 213
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAFF+F E+R + +E HP S+ V K E W +++ D K +
Sbjct: 74 KKFKDPNAPKRPPSAFFLFCSEYRPKIRE-HP-GLSIGDVAKKLEEMWNNIAADGKQSYE 131
Query: 92 ERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
++A K K Y K++ + Q NAAE
Sbjct: 132 KKAAKLKGKYRKDITAF--QGKGTANAAE 158
>gi|426220609|ref|XP_004004507.1| PREDICTED: high mobility group protein B2 [Ovis aries]
Length = 205
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|395840000|ref|XP_003792858.1| PREDICTED: high mobility group protein B2 [Otolemur garnettii]
Length = 209
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KNDKARYDREMKNY 78
>gi|383417927|gb|AFH32177.1| high mobility group protein B2 [Macaca mulatta]
Length = 206
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|351701092|gb|EHB04011.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 215
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 94 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 152
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 153 KEKYEKDIAAY 163
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|296195168|ref|XP_002745261.1| PREDICTED: high mobility group protein B2-like isoform 2
[Callithrix jacchus]
Length = 205
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|403267260|ref|XP_003925762.1| PREDICTED: uncharacterized protein LOC101050525 [Saimiri
boliviensis boliviensis]
Length = 645
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ PKRPPS FF+F EFR + K +P S+ V K GE+ ++S+ K P + +A
Sbjct: 242 DPDAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKRLGERRNNLSDSGKQPSITKAA 300
Query: 96 KRKSDYNKNMQDY-NKQLADGVNAAEE 121
K K ++ +Y +K DG E
Sbjct: 301 KLKERNEEDGAEYKSKGKFDGAKGPAE 327
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFV 91
A DP KPK SA+ F++ R++ K+ +P + A K E+WK+MS EK+ F
Sbjct: 158 ARGDPKKPKGKVSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSRKEKSTFD 217
Query: 92 ERAEKRKSDYNKNM 105
E + K Y++ M
Sbjct: 218 EMTKVDKVRYDQEM 231
>gi|426392256|ref|XP_004062472.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Gorilla gorilla gorilla]
Length = 198
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDP+ PKRPPSAFF+F E+ + K HP S+ V K GE W + D+K P+ ++A
Sbjct: 77 KDPSAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVVKKLGEMWNDTAADDKQPYEKKA 135
Query: 95 EKRKSDYNKNMQDYN 109
K K Y K++ Y
Sbjct: 136 AKLKEKYEKDIAAYQ 150
>gi|148684659|gb|EDL16606.1| mCG50402 [Mus musculus]
Length = 214
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F + + K HP+ S+ V K GE W + + D+K P+ ++A
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHPDL-SIGDVAKKLGEMWNNAAADDKQPYEKKA 147
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 148 AKLKEKYEKDIAAY 161
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ FM+ RK+ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 3 DPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 62
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + ++ Y
Sbjct: 63 KADKARYKRKIKTY 76
>gi|321259756|ref|XP_003194598.1| nonhistone protein 6 [Cryptococcus gattii WM276]
gi|317461070|gb|ADV22811.1| Nonhistone protein 6, putative [Cryptococcus gattii WM276]
Length = 110
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 29 AKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKA 88
AK ++ KDPNKPKR SA+ F++++R++ K +P + VGK G KW+ M+E+EK
Sbjct: 17 AKRRSKKDPNKPKRALSAYMFFVQDYRERIKAENPEA-TFGDVGKLLGIKWREMNENEKK 75
Query: 89 PF-------VERAEKRKSDY 101
P+ ERA++ +DY
Sbjct: 76 PYEAKAKADKERADRENADY 95
>gi|440799045|gb|ELR20106.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 143
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 28 TAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEK 87
T K K KDPN PKR +A+ +F E R + K +P + K +KWK++S+DEK
Sbjct: 41 TKKGKKEKDPNAPKRAKTAYIIFATEERPRAKADNPE-LGFGDLTKCVSDKWKALSDDEK 99
Query: 88 APFVERAEKRKSDYNKNMQDYNKQLAD 114
AP++E+A + K Y + YNK +D
Sbjct: 100 APYLEKAAQDKERYADEVSKYNKSKSD 126
>gi|226372550|gb|ACO51900.1| High mobility group protein B2 [Rana catesbeiana]
Length = 212
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFF+F E R Q K P S+ K GE W + +K PF ++A
Sbjct: 92 DPNAPKRPPSAFFLFCSENRPQIKNDTPGL-SIGDTAKKLGELWSEQTPKDKQPFEQKAA 150
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
K K Y K++ Y + + V SK +V
Sbjct: 151 KLKEKYEKDVAAYRAKGSSDVGKKIPGRPASSKKKVE 187
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ S A K E+WK+MS K F + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVSFAEFSKKCSERWKTMSAKGKGKFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y + M+ Y
Sbjct: 65 KGDKVRYEREMKTY 78
>gi|183212219|gb|ACC54772.1| high mobility group box 3 [Xenopus borealis]
Length = 152
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V D+++K G K K KDPN PKRPPS FF+F EFR K +P
Sbjct: 72 AKVDKVRYDNEMKDFGP-----VKKGKKKKDPNAPKRPPSGFFLFCSEFRPNIKSTNP-G 125
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPF 90
++ V K GE W ++ + EK P+
Sbjct: 126 ITIGDVAKKLGEMWNNLGDSEKQPY 150
>gi|302755040|ref|XP_002960944.1| hypothetical protein SELMODRAFT_73858 [Selaginella moellendorffii]
gi|300171883|gb|EFJ38483.1| hypothetical protein SELMODRAFT_73858 [Selaginella moellendorffii]
Length = 457
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDP KPKRP + + + EE R N V +GK GE+W+SM E +AP+ + A
Sbjct: 245 KDPEKPKRPTTGYMAYSEERRPALMN---ENLKVPQIGKILGEEWRSMDEKARAPYEKIA 301
Query: 95 EKRKSDYNKNMQDYNKQLADGVNAAEENESDKSK 128
K+ Y M+ YNK+ A AE+ +K+K
Sbjct: 302 TDAKATYLTEMEAYNKKKAQEEVVAEQALKEKAK 335
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP + K+P S++F++ + R++ + +PN + + GE WKS+SE+EK P+ E +
Sbjct: 126 DPERIKKPLSSYFLWCNDQREKVRAQNPNA-GIKELSSIFGELWKSVSEEEKKPYEEIYQ 184
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDE 134
K K +Y K + K+ A+ + ++ ++ K E+ D+
Sbjct: 185 KNKEEYLKQLVGKEKREAEALKLLQDEKNRKLSKEILDQ 223
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R AK K A +P KPK+ +A+ +F E+RK+ + P K A + KW M +E
Sbjct: 362 RKAKAKTA-EPGKPKKAATAYILFGMEYRKKLQAEMPTAK-FAELTALVASKWNEMGAEE 419
Query: 87 KAPFVERAEKRKSDYNKNMQDYNK 110
K P+V +A K Y + M+++ +
Sbjct: 420 KQPYVNQAGVEKLKYQEAMEEFKR 443
>gi|119187239|ref|XP_001244226.1| hypothetical protein CIMG_03667 [Coccidioides immitis RS]
gi|303317166|ref|XP_003068585.1| Nonhistone chromosomal protein 6B, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108266|gb|EER26440.1| Nonhistone chromosomal protein 6B, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320038503|gb|EFW20438.1| nucleosome binding protein Nhp6a [Coccidioides posadasii str.
Silveira]
gi|392870942|gb|EAS32789.2| non-histone chromosomal protein 6 [Coccidioides immitis RS]
Length = 102
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 15 SKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKA 74
S ++KG RA K+ KDPN PKR SA+ F E R+ +E +P S VGK
Sbjct: 6 STRQTKGRRAEKKK------KDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKL 58
Query: 75 AGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
GE+WK++S+ ++AP+ E+A K Y +YN
Sbjct: 59 LGERWKALSDKQRAPYEEKAAADKKRYEDEKANYN 93
>gi|94966915|ref|NP_001035652.1| high mobility group protein B4 [Bos taurus]
gi|119370723|sp|Q32L34.1|HMGB4_BOVIN RecName: Full=High mobility group protein B4
gi|81673105|gb|AAI09791.1| High-mobility group box 4 [Bos taurus]
gi|296488916|tpg|DAA31029.1| TPA: high mobility group protein B4 [Bos taurus]
Length = 194
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ P+RPPS+F +F ++ Q K +P+ SV V KA+G+ W + ++ +K P+ +RA
Sbjct: 89 DPHAPRRPPSSFLLFCQDHYAQLKSENPS-WSVVQVAKASGKMWSAKTDVDKQPYEQRAA 147
Query: 96 KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKS-EVNDEDDEEGS 140
++ Y + + Y Q +E+ +++ + E + D +GS
Sbjct: 148 LLRAKYREELSVYRNQFNARKTCLQESATNQCREFEQAESDTTDGS 193
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVER 93
+D KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA +
Sbjct: 4 RDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEAL 63
Query: 94 AEKRKSDYNKNMQDY 108
A+ K+ Y + M +Y
Sbjct: 64 AKLDKARYQEEMMNY 78
>gi|367020358|ref|XP_003659464.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila ATCC
42464]
gi|347006731|gb|AEO54219.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila ATCC
42464]
Length = 101
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 23 RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSM 82
R+GK K ++ KDPN PKR SA+ F E R+ +E +P S VGK GE+WK++
Sbjct: 8 RSGK-AEKKRSKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKAL 65
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
S+ ++AP+ +A K Y Q YN ADG
Sbjct: 66 SDKQRAPYEAKAAADKKRYEDEKQAYN---ADG 95
>gi|339715208|ref|NP_001092721.2| high-mobility group box 1b [Danio rerio]
Length = 197
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + ++K+ G+ K K KDPN PKRPPSAFF+F ++R + K +P
Sbjct: 63 AKQDKVRYEREMKNYIPPKGE---KKKRFKDPNAPKRPPSAFFIFCGDYRPKIKGENPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
S+ + K GE W S S + K P+ ++A K K Y+K++ Y + G + E
Sbjct: 120 -SIGDIAKKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDIALYRTKGIAGFSKKE 173
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVE 92
KDP KP+ S++ F++ R++ K+ HP + + + K E+WK+MS EK F +
Sbjct: 2 GKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 93 RAEKRKSDYNKNMQDY 108
A++ K Y + M++Y
Sbjct: 62 MAKQDKVRYEREMKNY 77
>gi|226530710|ref|NP_001144208.1| hypothetical protein [Zea mays]
gi|195638446|gb|ACG38691.1| hypothetical protein [Zea mays]
gi|413936487|gb|AFW71038.1| hypothetical protein ZEAMMB73_874920 [Zea mays]
Length = 487
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+P SA+FV+ +E R K+V +GK GE+WK+M+E ++AP+ E A K+K +Y
Sbjct: 289 QPMSAYFVYSQERRATL---VAEKKNVPEIGKITGEEWKNMTEGQRAPYEEVARKQKEEY 345
Query: 102 NKNMQDYNKQLADGVNAAEENESDKSK 128
+K M+ Y ++ A+ + E+ E + K
Sbjct: 346 HKQMEVYKQKKAEEAASLEKEEQEHKK 372
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPN+PKRP S+F +F +E RKQ E P NN +T+ KWK +S +E+ + +
Sbjct: 408 DPNRPKRPASSFLLFSKEERKQLIEERPGINN---STLNALITVKWKELSGEERQAWNAK 464
Query: 94 AEKRKSDYNKNMQDYNK 110
A + Y K M++Y K
Sbjct: 465 AAPAMAAYKKEMEEYTK 481
>gi|307105669|gb|EFN53917.1| hypothetical protein CHLNCDRAFT_136125 [Chlorella variabilis]
Length = 101
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRP SA+ F + R + K++ P+ S+ VGKA G WK +S+ EK P+ ++A+
Sbjct: 27 DPNAPKRPLSAYMYFASDKRVEMKKSDPSL-SLGEVGKATGAAWKELSDKEKEPYQKKAD 85
Query: 96 KRKSDYNKNMQDYNKQ 111
K K+ Y K Y K+
Sbjct: 86 KDKARYEKEKAAYEKK 101
>gi|326475470|gb|EGD99479.1| nucleosome binding protein [Trichophyton tonsurans CBS 112818]
Length = 102
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ +F E R +E +PN + VGK GE+WK++S+ ++ P+ E+A
Sbjct: 20 KDPNAPKRGLSAYMIFANEQRAAVREENPN-ITFGQVGKVLGERWKALSDKQRVPYEEKA 78
Query: 95 EKRKSDYNKNMQDYN 109
K Y YN
Sbjct: 79 ATDKQRYEDEKAAYN 93
>gi|171680363|ref|XP_001905127.1| hypothetical protein [Podospora anserina S mat+]
gi|170939808|emb|CAP65034.1| unnamed protein product [Podospora anserina S mat+]
Length = 98
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ F E R+ +E +P S VGK GE+WK++S+ ++AP+ +A
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSDKQRAPYEAKA 79
Query: 95 EKRKSDYNKNMQDYNKQLA 113
K Y Q YN LA
Sbjct: 80 AADKKRYEDEKQAYNVSLA 98
>gi|237845111|ref|XP_002371853.1| high mobility group protein [Toxoplasma gondii ME49]
gi|211969517|gb|EEB04713.1| high mobility group protein [Toxoplasma gondii ME49]
gi|221480801|gb|EEE19228.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221501467|gb|EEE27242.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 302
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKA 88
K KA KDPN PKRP SAF F ++ R++ +P KS +A VGK GE W +S+ +K
Sbjct: 218 KTKAKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGKLSDAQKK 277
Query: 89 PFVERAEKRKSDYNKNMQDYNK 110
P+ +A K+ Y + M Y K
Sbjct: 278 PYESKAVADKARYEREMIAYKK 299
>gi|290986470|ref|XP_002675947.1| predicted protein [Naegleria gruberi]
gi|284089546|gb|EFC43203.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
D N PKRP S++ +F + +RK +P K V V K GEKW M++ EKAP+V +A
Sbjct: 116 DENAPKRPLSSYMLFSQTYRKSLVAENPTLK-VTEVAKLVGEKWGKMNDAEKAPYVNKAA 174
Query: 96 KRKSDYN 102
+ K+ YN
Sbjct: 175 ELKAAYN 181
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEA--HPNNKSVATVGKAAGEKWKS 81
AGK+++K KDPN PKRP + FF+F +E R++ K KS + V K GE+W
Sbjct: 2 AGKKSSK---KKDPNAPKRPKTGFFLFCDERREKVKATLGEGEKKSASEVSKLLGEEWGK 58
Query: 82 MSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
+++ EK + ++K Y K ++Y K
Sbjct: 59 LTDSEKDKYNSVSKKNMEVYKKQFEEYKK 87
>gi|345320167|ref|XP_001521836.2| PREDICTED: FACT complex subunit SSRP1-like, partial
[Ornithorhynchus anatinus]
Length = 295
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK M++++K +
Sbjct: 119 KKGKDPNAPKRPMSAYMLWLNASREKIKADHPGI-SITDLSKKAGEIWKGMTKEKKEEWD 177
Query: 92 ERAEKRKSDYNKNMQDYN 109
+AE+ K +Y K M++Y+
Sbjct: 178 RKAEEAKREYEKAMKEYS 195
>gi|410910282|ref|XP_003968619.1| PREDICTED: high mobility group-T protein-like isoform 1 [Takifugu
rubripes]
Length = 196
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF+F E R + K +P ++ K GE W S + +EK P+ ++A
Sbjct: 89 KDPNAPKRPPSAFFLFCAELRPKVKSENPGL-TIGDTAKKLGEMWNSKTAEEKQPYEKKA 147
Query: 95 EKRKSDYNKNMQDY 108
K K Y+K++ Y
Sbjct: 148 AKLKEKYDKDIVAY 161
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP+ + + A K E+WK+MS EK F +
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDM 62
Query: 94 AEKRKSDYNKNMQDY 108
A++ K Y + M++Y
Sbjct: 63 AKQDKVRYEREMKNY 77
>gi|356494961|ref|XP_003516349.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 178
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAA 75
DPN PKRPP+ FFVF+++FRK FKEA+P++K VGK A
Sbjct: 99 DPNMPKRPPTTFFVFLDDFRKSFKEANPDSKDAKRVGKEA 138
>gi|47522942|ref|NP_999228.1| high mobility group protein B2 [Sus scrofa]
gi|123375|sp|P17741.2|HMGB2_PIG RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|164492|gb|AAA31051.1| non-histone protein HMG2 precursor [Sus scrofa]
Length = 210
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|409050062|gb|EKM59539.1| hypothetical protein PHACADRAFT_250106 [Phanerochaete carnosa
HHB-10118-sp]
Length = 256
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAH---PNNKSVATVGKAAGEKWKSM 82
KR KPK DPN PKRPPS++ +F E R++ K H PNN+ +A + KA W M
Sbjct: 88 KRKTKPK---DPNAPKRPPSSYLLFQNEVRQELKAKHPNIPNNELLAKIAKA----WGDM 140
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
+++K + R K+ Y + ++Y + L G
Sbjct: 141 PKEQKDRYESRHAVSKNHYLEQKKEYERTLTGG 173
>gi|351712970|gb|EHB15889.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 677
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+T + K KDP+ P++P SA+ +++ R+ K HP S+A + K AGE WK MS+
Sbjct: 532 KKTVEVKKGKDPSVPEQPLSAYVLWLNASREMIKSEHPG-ISIANLSKKAGEIWKGMSKT 590
Query: 86 EKAPFVERAEKRKSDYNKNMQDYNKQL 112
K + +AE + +Y K +++Y + L
Sbjct: 591 MKEEWGHKAEDVRLEYEKAVKEYERGL 617
>gi|395850653|ref|XP_003797893.1| PREDICTED: uncharacterized protein LOC100942737 [Otolemur
garnettii]
Length = 633
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAFF F E+R + K HP S+ V + GE W + +E +K P ++A
Sbjct: 513 KDPNAPKRPPSAFFWFCSEYRPKIKGEHP-GLSIGDVAEKLGEMWSNTAEGDKQPEEKKA 571
Query: 95 EKRKSDYNKNM 105
K K Y K++
Sbjct: 572 AKLKEKYEKDI 582
>gi|303304752|emb|CBD77423.1| high mobility group box 2 protein [Plecoglossus altivelis]
Length = 215
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAFFVF + R + K +P S+ + K GE W + +K P+ +A
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRARIKGENPGI-SIGDIAKKLGELWSKQTPKDKQPYEAKAG 150
Query: 96 KRKSDYNKNMQDYNKQLADG 115
K K Y K++ Y + G
Sbjct: 151 KLKEKYEKDVAAYRAKSGAG 170
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVE 92
KDPNKP+ S++ F++ R++ K+ HP + + K E+WK+MS EK F +
Sbjct: 3 GKDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMSAKEKVKFED 62
Query: 93 RAEKRKSDYNKNMQDY 108
A+ K Y++ M+ Y
Sbjct: 63 LAKGDKVRYDREMKGY 78
>gi|361127235|gb|EHK99210.1| putative Non-histone chromosomal protein 6 [Glarea lozoyensis
74030]
Length = 100
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGE 77
K K + KRT K K KDPN PKR SA+ F E R+ +E +P S VGK GE
Sbjct: 3 KEKAPKRAKRTEKKK--KDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKVLGE 59
Query: 78 KWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
+WK++S+ ++ P+ +A+ K Y + +YN
Sbjct: 60 RWKALSDTQRKPYAAKADADKIRYEEEKANYN 91
>gi|351702997|gb|EHB05916.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 204
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR PS FF+F E+R + K HP S V K GE W + + +K P+ ++A
Sbjct: 90 KDPNAPKRAPSTFFLFCSEYRPKIKGEHPGL-STGDVAKKLGEMWNNTAAGDKQPYEKKA 148
Query: 95 EKRKSDYNKNMQDY 108
+ K Y K++ Y
Sbjct: 149 AELKEKYEKDIAAY 162
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ H + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVKFSEYSKKCSERWKTMSAKEKGTFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KVDKARYERKMKTY 78
>gi|353241760|emb|CCA73553.1| hypothetical protein PIIN_07506 [Piriformospora indica DSM 11827]
Length = 312
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSA+ ++ RK+ K+ +P +G+ + + W +S +EK P+++
Sbjct: 113 KDPNAPKRPPSAYLLYQNAIRKEIKDKNPTMTYAEVLGEIS-KMWSGLSAEEKKPYLDAT 171
Query: 95 EKRKSDYNKNMQDY 108
E K +Y K+ Y
Sbjct: 172 EIAKGEYEKSKAAY 185
>gi|74628491|sp|Q7S045.1|NHP6_NEUCR RecName: Full=Non-histone chromosomal protein 6
gi|336464617|gb|EGO52857.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2508]
gi|350296712|gb|EGZ77689.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2509]
Length = 103
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K +A KDPN PKR SA+ F E R+ +E +P S VGK GE+WK++S+ ++AP
Sbjct: 16 KRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSDKQRAP 74
Query: 90 FVERAEKRKSDYNKNMQDYN 109
+ +A K Y Q YN
Sbjct: 75 YEAKAAADKKRYEDEKQAYN 94
>gi|444726214|gb|ELW66754.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPPSAF +F E+R + K HP + V K GE W + + K P+
Sbjct: 36 KKVKDPNAPKRPPSAFLLFCSEYRPKIKGEHPGL-FIGDVAKKLGEMWNNTAAGGKQPYE 94
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 95 KKAAKLKEKYEKDIAAY 111
>gi|358055994|dbj|GAA98339.1| hypothetical protein E5Q_05024 [Mixia osmundae IAM 14324]
Length = 615
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
KR K K A+DPN PKRPPSA+ +F R+ ++A P+ + K + E+W M E+
Sbjct: 358 KRAKKRKVARDPNAPKRPPSAYLMFQNTVRQAMRDADPSIAYKDLLTKIS-ERWAGMPEE 416
Query: 86 EKAPFVERAEKRKSDYNKNMQDYNKQL 112
+K + E A+ DY +Y++ L
Sbjct: 417 DKRKYSELADAAMKDYRTQKDNYDRGL 443
>gi|440298630|gb|ELP91261.1| HMG (high mobility group) box domain containing protein, partial
[Entamoeba invadens IP1]
Length = 214
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+DPN PK+P + + +F+ E R++F+E P K + + K A E W+ M E++K ++++A
Sbjct: 113 QDPNLPKKPMTPYLMFLNEHREEFREKFPELK-ITEIAKKAAEIWRDMKEEDKQVYLDKA 171
Query: 95 EKRKSDYNKNMQDYN 109
+K Y + M+ YN
Sbjct: 172 KKATEKYLEEMKTYN 186
>gi|401406436|ref|XP_003882667.1| Zgc:123215, related [Neospora caninum Liverpool]
gi|325117083|emb|CBZ52635.1| Zgc:123215, related [Neospora caninum Liverpool]
Length = 98
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERA 94
DPN P+R SAF F +E R + AHP KS T VGK GE W ++ +E+ PF E+A
Sbjct: 21 DPNAPRRALSAFMFFAKEKRTEIVAAHPELKSQMTKVGKMVGEAWGKLTPEERKPFEEKA 80
Query: 95 EKRKSDYNKNMQDYNKQ 111
+ K+ Y Q++ ++
Sbjct: 81 AQDKARYLTEKQEFEQK 97
>gi|159476440|ref|XP_001696319.1| high mobility group protein [Chlamydomonas reinhardtii]
gi|158282544|gb|EDP08296.1| high mobility group protein [Chlamydomonas reinhardtii]
Length = 179
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PK+P ++F F R+ K +P + VGK GEKWK +S D+K + E+A
Sbjct: 57 DPNAPKKPLTSFMYFSNAIRESVKSENPGI-AFGEVGKVIGEKWKGLSADDKKEYDEKAA 115
Query: 96 KRKSDYNKNMQDYN 109
K K Y K M+ Y
Sbjct: 116 KDKERYQKEMESYG 129
>gi|156837652|ref|XP_001642846.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113421|gb|EDO14988.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
KRT + K KDPN PKR SA+ F E R + +P+ S VG+ GEKWK+++ +
Sbjct: 9 KRTTRRK--KDPNAPKRALSAYMFFANETRDIVRAENPDV-SFGQVGRILGEKWKALTPE 65
Query: 86 EKAPFVERAEKRKSDYNKNMQDYNKQLA 113
+K PF +AE K Y + YN LA
Sbjct: 66 DKVPFEAKAEADKKRYESEKELYNATLA 93
>gi|225709792|gb|ACO10742.1| High mobility group protein B2 [Caligus rogercresseyi]
Length = 215
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 6 SKADAVGTDSKLKS----KGARA-GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
+K D V D +K KG++A GKR KDPN PKRPPSAFFVF E R + K
Sbjct: 64 AKGDKVRYDKDMKGYVPPKGSKAAGKRK------KDPNAPKRPPSAFFVFCAEHRGRIKA 117
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNA 118
+P + + K G W + +K P +A K K Y K++ Y + G A
Sbjct: 118 DNPGM-GIGDIAKQLGLLWGKQTPKDKLPHEAKATKLKEKYEKDVAAYKAKGGAGATA 174
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVER 93
KDPNKPK S++ F+ R++ K+ HP + + K E+W++MS EK F +
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDM 63
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y+K+M+ Y
Sbjct: 64 AKGDKVRYDKDMKGY 78
>gi|409043132|gb|EKM52615.1| hypothetical protein PHACADRAFT_164552 [Phanerochaete carnosa
HHB-10118-sp]
Length = 115
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMS 83
A K A K KD N PKR SA+ F +++R++ K +P+ S +GK G KWK +
Sbjct: 14 ADKEKAPRKTKKDKNAPKRALSAYMFFSQDWRERVKAENPDA-SFGELGKLLGTKWKELD 72
Query: 84 EDEKAPFVERAEKRKSDYNKNMQDYN 109
E+EK P++E+AE+ K+ + +DY+
Sbjct: 73 EEEKKPYIEQAERDKARAEREKKDYD 98
>gi|444705868|gb|ELW47253.1| High mobility group protein B1 [Tupaia chinensis]
Length = 182
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
K KDPN PKRPPSAFF+F E+ + KE HP + V K GE W + + D K P+
Sbjct: 75 KKFKDPNAPKRPPSAFFLFCPEYHPKLKEGHPGL-IIGDVAKKLGEMWGNAAADGKQPY 132
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 49 VFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107
F + RK+ K+ HP+ + + + K E+WK+MS +K F +RA+ K+ Y + M+
Sbjct: 6 FFEQTCRKEHKKKHPDASVNFSEFSKKGSERWKTMSAKQKGKFEDRAKVDKARYEREMKT 65
Query: 108 Y 108
Y
Sbjct: 66 Y 66
>gi|296221849|ref|XP_002756934.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 203
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KD N PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A
Sbjct: 87 KDRNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWSNTAADDKQPYEKKA 145
Query: 95 EKRKSDYNKNMQDY 108
K K K++ Y
Sbjct: 146 AKLKEKCEKDIAAY 159
>gi|154284354|ref|XP_001542972.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|150406613|gb|EDN02154.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|240273630|gb|EER37150.1| nucleosome binding protein [Ajellomyces capsulatus H143]
gi|325087527|gb|EGC40837.1| nucleosome binding protein [Ajellomyces capsulatus H88]
Length = 102
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGE 77
K K +R K + K KDPN PKR SA+ F E R+ +E +P S VGK GE
Sbjct: 3 KEKASRKTKARSIEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKVLGE 61
Query: 78 KWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
+WK+++E ++AP+ +A K Y YN Q
Sbjct: 62 RWKALNEKQRAPYEAKAAADKKRYEDEKASYNAQ 95
>gi|388857490|emb|CCF48846.1| uncharacterized protein [Ustilago hordei]
Length = 292
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+DP KPKRP SAFF F+ + R + + PN + K GE+WK M+ ++KAP+ +RA
Sbjct: 215 RDPAKPKRPNSAFFEFLNDLRAR-ETVIPN---ITEFSKRGGERWKQMAPEQKAPYEQRA 270
Query: 95 EKRKSDYNKNMQDYN 109
Y ++++ YN
Sbjct: 271 LHALEQYKRDLEIYN 285
>gi|242215849|ref|XP_002473736.1| predicted protein [Postia placenta Mad-698-R]
gi|220727131|gb|EED81060.1| predicted protein [Postia placenta Mad-698-R]
Length = 578
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 50/102 (49%)
Query: 29 AKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKA 88
A+ +DP RPP+AF +F E+ ++ N T+ K AGE WK +S+ EK
Sbjct: 99 AQRNRERDPTWVPRPPNAFIIFRSEYSRKHAHGGTNKAEEKTLSKRAGETWKLLSDAEKK 158
Query: 89 PFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSE 130
P+ RAE+ ++D+ + Y + G AA S+ E
Sbjct: 159 PYKLRAEQERADHQRRNPGYKYRPRRGQTAAGNVSGPMSRRE 200
>gi|444726553|gb|ELW67082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 111
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN +R PSAFF+F E+R + K HP S+ V K GE W + + +K P+ ++A
Sbjct: 39 KDPNASQRSPSAFFLFSSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAAGDKQPYGKKA 97
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 98 AKLKEKYEKDIAAY 111
>gi|444722479|gb|ELW63171.1| High mobility group protein B2 [Tupaia chinensis]
Length = 147
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN PKRPPSAFF+F E + K HP S+ K GE W S +K P ++A K
Sbjct: 30 PNTPKRPPSAFFLFCSEHLPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPCEQKAAK 88
Query: 97 RKSDYNKNMQDY 108
K Y K++ Y
Sbjct: 89 LKEKYEKDIAAY 100
>gi|444727982|gb|ELW68448.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRPPSAF +F E+R + K HP S+ V K GE W + + D+K P+ E
Sbjct: 79 DPNAPKRPPSAFSLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY----E 133
Query: 96 KRKSDYNKN 104
K+ + NKN
Sbjct: 134 KKAAKLNKN 142
>gi|124805429|ref|XP_001350438.1| high mobility group protein [Plasmodium falciparum 3D7]
gi|6525222|gb|AAF15357.1|AF201952_1 high mobility group protein [Plasmodium falciparum]
gi|23496560|gb|AAN36118.1|AE014844_29 high mobility group protein [Plasmodium falciparum 3D7]
Length = 97
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP+ PKR SA+ F +E R + P +K VATVGK GE W + E EKAPF ++
Sbjct: 16 KDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKK 75
Query: 94 AEKRKSDYNKNMQDY 108
A++ K Y K +Y
Sbjct: 76 AQEDKLRYEKEKAEY 90
>gi|46105649|ref|XP_380561.1| hypothetical protein FG00385.1 [Gibberella zeae PH-1]
gi|110287687|sp|Q4IQX3.1|NHP6_GIBZE RecName: Full=Non-histone chromosomal protein 6
gi|408400690|gb|EKJ79767.1| hypothetical protein FPSE_00047 [Fusarium pseudograminearum CS3096]
Length = 101
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
+A KDPN PKR SA+ F E R+ +E +P S VGK GE+WK+++E ++AP+
Sbjct: 16 RAKKDPNAPKRGLSAYMFFANEQRENVREENPG-ISFGQVGKLLGERWKALNEKQRAPYE 74
Query: 92 ERAEKRKSDYNKNMQDYN 109
+A K Y Q YN
Sbjct: 75 AKAAADKKRYEDEKQAYN 92
>gi|444732758|gb|ELW73033.1| High mobility group protein B2 [Tupaia chinensis]
Length = 234
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D V D ++KS + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 98 AKSDKVRYDREMKS---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 154
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 155 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 196
>gi|321476548|gb|EFX87508.1| hypothetical protein DAPPUDRAFT_306496 [Daphnia pulex]
Length = 191
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMS 83
A R K K KDPN PKR SAFF F + R KE HP ++ + K G +W
Sbjct: 86 ATGRGTKRKQVKDPNAPKRSLSAFFWFCHDLRGHVKEQHPEY-TLGEIAKELGRRWGVSD 144
Query: 84 EDEKAPFVERAEKRKSDYNKNMQDYNK 110
+ KA + +AE+ ++ Y ++M Y K
Sbjct: 145 DATKAQYAAKAEQDRARYERDMNAYKK 171
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAP 89
P+A D NKP+ +A+ FM+ R++ K +P+ N + +WK M+E++K
Sbjct: 2 PRAKGDSNKPRGRMTAYAYFMQTCREEHKNKYPDENVVFLEFSRRCAGQWKLMTENDKKR 61
Query: 90 FVERAEKRKSDYNKNMQDY 108
F AE+ K + M+ Y
Sbjct: 62 FQGMAERDKLRFENEMRHY 80
>gi|213514690|ref|NP_001133170.1| high-mobility group box 2 [Salmo salar]
gi|197632301|gb|ACH70874.1| high-mobility group box 2 [Salmo salar]
gi|221219834|gb|ACM08578.1| High mobility group protein B2 [Salmo salar]
gi|221220870|gb|ACM09096.1| High mobility group protein B2 [Salmo salar]
gi|223646276|gb|ACN09896.1| High mobility group protein B2 [Salmo salar]
gi|223646962|gb|ACN10239.1| High mobility group protein B2 [Salmo salar]
gi|223672123|gb|ACN12243.1| High mobility group protein B2 [Salmo salar]
gi|223672825|gb|ACN12594.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 6 SKADAVGTDSKLKS----KGARA-GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
+K D V D +K KG++A GKR KDPN PKRPPSAFFVF E R + K
Sbjct: 64 AKGDKVRYDKDMKGYVPPKGSKAAGKRK------KDPNAPKRPPSAFFVFCAEHRGRIKA 117
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNA 118
+P + + K G W + +K P +A K K Y K++ Y + G A
Sbjct: 118 DNPGM-GIGDIAKQLGLLWGKQTPKDKLPHEAKAAKLKEKYEKDVAAYKAKGGAGATA 174
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVER 93
KDPNKPK S++ F+ R++ K+ HP + + K E+W++MS EK F +
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDM 63
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y+K+M+ Y
Sbjct: 64 AKGDKVRYDKDMKGY 78
>gi|62660600|ref|XP_573625.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|392333089|ref|XP_003752789.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKS 99
PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K K
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 100 DYNKNMQDY 108
Y K++ Y
Sbjct: 154 KYEKDIAAY 162
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S + F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|344248925|gb|EGW05029.1| hypothetical protein I79_015964 [Cricetulus griseus]
Length = 164
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAF +F E+R + K HP S+ V K GE W + + +K P+ ++A
Sbjct: 40 KDPNAPKRPPSAF-LFCSEYRPKTKGEHP-GLSLGDVAKKLGEMWNNTAAGDKQPYEKKA 97
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 98 AKLKEQYEKDIAAY 111
>gi|443897201|dbj|GAC74542.1| putative N2 [Pseudozyma antarctica T-34]
Length = 1388
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 15/99 (15%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKA--- 74
+S +AGK ++ KDPN PK+P SA+F+F+ R A PN G+
Sbjct: 1289 RSAQRKAGK--SRKGNLKDPNAPKKPLSAYFLFLRAIR-----ADPNMTQAVFEGEQETT 1341
Query: 75 -----AGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
A KW+S+SE EK P+++RAE K+ Y + ++Y
Sbjct: 1342 KQSVLAAAKWRSLSETEKQPYLDRAEADKARYERLRREY 1380
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 3 GGRSKADAVGTDSKLKSKG-------ARAGKRTAKPKAAKDPNKP----------KRPPS 45
G SK A K KSK A + AK + +DP KP K+ PS
Sbjct: 1150 GKASKKGASADAPKAKSKAHPYAQPEPAADTKPAKKQKKEDPPKPSALKSRLKPPKQAPS 1209
Query: 46 AFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
A+ +F E ++ K P+ + +VA V K AG+++ ++ E +K F R+ + K + +
Sbjct: 1210 AWQIFFTEELQKIKAQSPDERLNVAHVAKDAGQRYAALPESKKQEFHRRSLEAKELWEQE 1269
Query: 105 MQDYNKQL 112
M D+ +L
Sbjct: 1270 MADWKAKL 1277
>gi|444518100|gb|ELV11958.1| High mobility group protein B1 [Tupaia chinensis]
Length = 162
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN PKRPPSAFF+F E+R + K HP + S+ V K GE W + + D+K P ++A K
Sbjct: 92 PNVPKRPPSAFFLFCSEYRPKIKGEHP-DLSIGDVEKKLGEVWNNAAADDKQPCEKKAAK 150
Query: 97 RKSDYNKNMQDY 108
K Y K++ Y
Sbjct: 151 LKEKYEKDIAAY 162
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ ++ HP+ + + E+WK+MS +EK + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHRKKHPDALVDFSEFSQKCSERWKTMSAEEKGKLEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KVDKARYEREMRTY 78
>gi|310793467|gb|EFQ28928.1| HMG box protein [Glomerella graminicola M1.001]
Length = 103
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 16 KLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAA 75
K +K AGK K +A KDPN PKR SA+ F E R+ +E +P S VGK
Sbjct: 3 KASTKRGAAGK-VDKKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKIL 60
Query: 76 GEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
GE+WK++++ ++AP+ +A K Y Q YN
Sbjct: 61 GERWKALNDKQRAPYEAKAATDKKRYEDEKQAYN 94
>gi|409075858|gb|EKM76234.1| hypothetical protein AGABI1DRAFT_16670, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426193694|gb|EKV43627.1| hypothetical protein AGABI2DRAFT_56560, partial [Agaricus bisporus
var. bisporus H97]
Length = 106
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K+ KDP PKR SA+ F +++R++ K +P VGK G KWK M E+EK P+V
Sbjct: 15 KSKKDPKAPKRALSAYMFFSQDWRERIKTENPEA-GFGEVGKLLGAKWKEMDEEEKKPYV 73
Query: 92 E-------RAEKRKSDYN 102
E RAEK K+ Y+
Sbjct: 74 EQATADKTRAEKEKASYD 91
>gi|356523473|ref|XP_003530363.1| PREDICTED: high mobility group B protein 13-like isoform 2 [Glycine
max]
Length = 467
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN+PK+P S+F +F +E RK +E P S +T+ KWK +SE+++ + +A
Sbjct: 381 DPNRPKKPASSFILFSKEARKTLQEERPGI-STSTLNALVSLKWKELSEEDRQFWNGQAS 439
Query: 96 KRKSDYNKNMQDYNKQLA 113
K Y K +++YNK LA
Sbjct: 440 KAMDAYKKELEEYNKSLA 457
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
P KPK P SA+F+F + R NK+ V K E+WK+M+E++K P+ E A+K
Sbjct: 264 PLKPKHPMSAYFLFTNDRRAAL---AAENKNFLEVPKITSEEWKNMTEEQKRPYEEMAKK 320
Query: 97 RKSDYNKNMQDY 108
K Y M+ Y
Sbjct: 321 NKEQYALEMEAY 332
>gi|405977513|gb|EKC41956.1| High mobility group protein B3 [Crassostrea gigas]
Length = 202
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 35 KDPN---KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KDPN KPKRP SA+F F+ +FR + K ++K + K AGE W+++ ++EK PF
Sbjct: 91 KDPNDAGKPKRPQSAYFCFLADFRLKMKGKDIDHKEII---KMAGEAWRNLDDNEKKPFE 147
Query: 92 ERAEKRKSDYNKNMQDYNK 110
+ A+K + Y + + D+ K
Sbjct: 148 KLAQKEQEKYEQALSDWRK 166
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
AKDPN+PKR SA+F F+ + R+ K+A +A K KW M+E +K PF ++
Sbjct: 14 AKDPNRPKRATSAYFFFLSKMREDSKKAGKPITKIAEFTKECSAKWAKMNEKDKEPFAKK 73
Query: 94 AEKRKSDYNKNMQDY 108
A K+ Y+ M Y
Sbjct: 74 ALTDKNRYDAEMAIY 88
>gi|89475586|gb|ABD73318.1| high-mobility group box 1 [Oncorhynchus mykiss]
Length = 154
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + +++S G+ K K KDPN PKRP SAFF+F +FR Q K P
Sbjct: 63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPF 90
S+ V K GEKW +++ ++K P+
Sbjct: 120 -SIGDVAKKLGEKWNNLTAEDKVPY 143
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+W++MS EK F +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M+ Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>gi|392592955|gb|EIW82281.1| HMG-box [Coniophora puteana RWD-64-598 SS2]
Length = 279
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 27 RTAKPKA-------AKDPNKPKRPPSAFFVFMEEFRK---QFKEAHPNNKSVATVGKAAG 76
RTA+ KA KDPN PK+P SA+F+F++ R +E + + A
Sbjct: 148 RTAQRKAGKSRRSNLKDPNAPKKPLSAYFMFLQRIRSDPALVREVFGDEQETTKQSVLAA 207
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
KW+ MS+DE+ PF+ RAE+ K +Y + Y
Sbjct: 208 AKWRDMSDDERKPFLARAEQEKLEYEAARRLY 239
>gi|297297620|ref|XP_001106417.2| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 210
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 4 GRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHP 63
G +K+D V D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 62 GMAKSDKVCYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHP 118
Query: 64 NNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 119 GL-STGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYQKDIAAY 162
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP-NNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP ++ + A K E+WK+MS EK+ F A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEGMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y++ M++Y
Sbjct: 65 KSDKVCYDREMKNY 78
>gi|356523471|ref|XP_003530362.1| PREDICTED: high mobility group B protein 13-like isoform 1 [Glycine
max]
Length = 478
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN+PK+P S+F +F +E RK +E P S +T+ KWK +SE+++ + +A
Sbjct: 392 DPNRPKKPASSFILFSKEARKTLQEERPGI-STSTLNALVSLKWKELSEEDRQFWNGQAS 450
Query: 96 KRKSDYNKNMQDYNKQLA 113
K Y K +++YNK LA
Sbjct: 451 KAMDAYKKELEEYNKSLA 468
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
P KPK P SA+F+F + R NK+ V K E+WK+M+E++K P+ E A+K
Sbjct: 264 PLKPKHPMSAYFLFTNDRRAAL---AAENKNFLEVPKITSEEWKNMTEEQKRPYEEMAKK 320
Query: 97 RKSDYNKNMQDY 108
K Y M+ Y
Sbjct: 321 NKEQYALEMEAY 332
>gi|345807806|ref|XP_003435667.1| PREDICTED: high mobility group protein B1-like [Canis lupus
familiaris]
Length = 135
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN KRPPS FF+F E+R + K +P S+ V K GE W + + DEK P+
Sbjct: 13 KKFKDPNALKRPPSFFFLFCSEYRPKIKGEYP-GLSIGDVAKNLGEMWNNTAADEKQPYE 71
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 72 KKAAKLKEKYEKDIAAY 88
>gi|221221606|gb|ACM09464.1| High mobility group protein B2 [Salmo salar]
gi|223646184|gb|ACN09850.1| High mobility group protein B2 [Salmo salar]
gi|223646756|gb|ACN10136.1| High mobility group protein B2 [Salmo salar]
gi|223672031|gb|ACN12197.1| High mobility group protein B2 [Salmo salar]
gi|223672611|gb|ACN12487.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 6 SKADAVGTDSKLKS----KGARA-GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
+K D V D +K KG++A GKR KDPN PKRPPSAFFVF E R + K
Sbjct: 64 AKGDKVRYDKDMKGYVPPKGSKAAGKRK------KDPNAPKRPPSAFFVFCAEHRGRIKA 117
Query: 61 AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNA 118
+P + + K G W + +K P +A K K Y K++ Y + G A
Sbjct: 118 DNPGM-GIGDIAKQLGLLWGKQTPKDKQPHEAKAAKLKEKYEKDVAAYKAKGGAGATA 174
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVER 93
KDPNKPK S++ F+ R++ K+ HP + + K E+W++MS EK F +
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDM 63
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y+K+M+ Y
Sbjct: 64 AKGDKVRYDKDMKGY 78
>gi|19112464|ref|NP_595672.1| HMG box protein [Schizosaccharomyces pombe 972h-]
gi|74638876|sp|Q9USU7.1|YHHB_SCHPO RecName: Full=HMG box-containing protein C28F2.11
gi|6018695|emb|CAB57940.1| HMG box protein [Schizosaccharomyces pombe]
Length = 310
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFV 91
A+DP +PKRPPSA+ +F + R + KE+ KS V V KA EKW S+SED++ +
Sbjct: 111 ARDPAQPKRPPSAYNLFQKNQRSEIKESL-GEKSNDVKEVNKAMHEKWGSLSEDDRKTYE 169
Query: 92 ERAEKRKSDYNKNMQDY-----NKQLADGVNAAEENESDKS 127
E A K + Y + M Y N +AD AEE + S
Sbjct: 170 EEASKLREAYEEEMAAYNASKENASVADSRVTAEETSTKPS 210
>gi|353351504|emb|CBX36444.1| high-mobility-group-1 protein [Plecoglossus altivelis]
Length = 204
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D V + ++K+ G+ K K KDPN PKRPPSAFF+F +FR + K P
Sbjct: 63 AKLDKVRYEREMKNYIPPKGE---KKKRFKDPNAPKRPPSAFFIFCADFRAKVKGETPGP 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGV 116
++ V K GE W ++K P+ ++A K K Y K++ Y + GV
Sbjct: 120 -TIGDVAKKLGEMWNGTCAEDKQPYEKKAAKLKEKYEKDIAAYRAKGKVGV 169
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP KP+ S++ F++ R++ K+ HP + + + K E+WK+MS EK F +
Sbjct: 3 KDPTKPRGKTSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 94 AEKRKSDYNKNMQDY 108
A+ K Y + M++Y
Sbjct: 63 AKLDKVRYEREMKNY 77
>gi|164422576|ref|XP_957906.2| hypothetical protein NCU09995 [Neurospora crassa OR74A]
gi|157069727|gb|EAA28670.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 95
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K +A KDPN PKR SA+ F E R+ +E +P S VGK GE+WK++S+ ++AP
Sbjct: 16 KRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSDKQRAP 74
Query: 90 FVERAEKRKSDYNKNMQDYN 109
+ +A K Y Q YN
Sbjct: 75 YEAKAAADKKRYEDEKQAYN 94
>gi|336272321|ref|XP_003350917.1| hypothetical protein SMAC_04223 [Sordaria macrospora k-hell]
gi|380090684|emb|CCC04854.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 103
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K +A KDPN PKR SA+ F E R+ +E +P + VGK GE+WK++S+ ++AP
Sbjct: 16 KRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGV-TFGQVGKILGERWKALSDKQRAP 74
Query: 90 FVERAEKRKSDYNKNMQDYN 109
+ +A K Y Q YN
Sbjct: 75 YEAKAAADKKRYEDEKQAYN 94
>gi|67470045|ref|XP_650993.1| HMG box protein [Entamoeba histolytica HM-1:IMSS]
gi|56467670|gb|EAL45607.1| HMG box protein [Entamoeba histolytica HM-1:IMSS]
gi|449703510|gb|EMD43949.1| HMG (high mobility group) box domain containing protein, putative
[Entamoeba histolytica KU27]
Length = 384
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KD NKPK+P +A+ +F E Q+K+ P+ K ++ +GK G +WK + E++K ++++
Sbjct: 102 KDENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPEEQKKKYIDQY 160
Query: 95 EKRKSDYNKNMQDYNKQ 111
K++YN +++Y+ Q
Sbjct: 161 YASKAEYNDKLKEYDAQ 177
>gi|346324407|gb|EGX94004.1| nucleosome binding protein [Cordyceps militaris CM01]
Length = 96
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
G R K +A KDPN PKR SA+ F E R +E +P S VGK GE+WK++SE
Sbjct: 11 GARVEKKRAKKDPNAPKRGLSAYMFFANEQRDNVREENPGV-SFGQVGKILGERWKALSE 69
Query: 85 DEKAPFVERAEKRKSDYNKNMQDYN 109
++ P+ +A K Y YN
Sbjct: 70 KQRVPYEAKAAADKKRYEDEKAAYN 94
>gi|74153177|dbj|BAB27638.3| unnamed protein product [Mus musculus]
Length = 191
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|393219482|gb|EJD04969.1| HMG-box [Fomitiporia mediterranea MF3/22]
Length = 114
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
+ A+ K KDPN PKR SA+ F +++R++ K +P+ VGK G KWK M E E
Sbjct: 20 KPARGKGKKDPNAPKRALSAYMFFSQDWRERVKAENPDA-GFGEVGKLLGAKWKEMDESE 78
Query: 87 KAPFVE-------RAEKRKSDYNK 103
K P++E RAE+ K++Y K
Sbjct: 79 KRPYIEQAARDKARAEEEKANYEK 102
>gi|358379174|gb|EHK16855.1| hypothetical protein TRIVIDRAFT_217092 [Trichoderma virens Gv29-8]
Length = 102
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 23 RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSM 82
R K K + KDPN PKR SA+ F E R+ +E +P S VGK GE+WK++
Sbjct: 9 RGAKDGGKKRTKKDPNAPKRGLSAYMFFANEQRENVREENPG-ISFGQVGKLLGERWKAL 67
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDYN 109
++ ++AP+ +A K Y Q YN
Sbjct: 68 NDKQRAPYEAKAAADKKRYEDEKQAYN 94
>gi|225556517|gb|EEH04805.1| non-histone chromosomal protein 6 [Ajellomyces capsulatus G186AR]
Length = 102
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGE 77
K K +R K + K KDPN PKR SA+ F E R+ +E +P S VGK GE
Sbjct: 3 KEKASRKTKPRSIEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKVLGE 61
Query: 78 KWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
+WK+++E ++AP+ +A K Y YN Q
Sbjct: 62 RWKALNEKQRAPYEAKAAADKKRYEDEKASYNAQ 95
>gi|342874398|gb|EGU76412.1| hypothetical protein FOXB_13090 [Fusarium oxysporum Fo5176]
Length = 102
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGE 77
K+ + GK + KDPN PKR SA+ F E R+ +E +P S VGK GE
Sbjct: 3 KAAAGKRGKAEKTKRGKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGE 61
Query: 78 KWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
+WK+++E ++AP+ +A K Y Q YN
Sbjct: 62 RWKALNEKQRAPYEAKAAADKKRYEDEKQAYN 93
>gi|119610319|gb|EAW89913.1| hCG1647425 [Homo sapiens]
Length = 254
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 23 RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSM 82
R+ +R +DPN PK PP AFF+F E + KE HP S++ V K GE W +
Sbjct: 105 RSAQRAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPG-LSISDVAKKLGEMWNYI 162
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDY 108
+ED+K P+ ++A K K Y K++ +
Sbjct: 163 AEDDKHPYEKKAVKLKEKYEKDIAAF 188
>gi|27466905|gb|AAO12859.1| high mobility group protein [Branchiostoma belcheri tsingtauense]
Length = 164
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 20 KGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKW 79
KGA G+R K KDPN PKR SAFF++ + R + + AHP+ + V + K G++W
Sbjct: 81 KGAEGGRRKRK---KKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGDIAKILGKQW 136
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNM 105
K +S+ +KA + ++A+ ++ Y K +
Sbjct: 137 KEISDSDKAKYEKKAQTERARYQKEL 162
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVER 93
KD NKPK SA+ F++E R++ ++ +PN + V T + +WK+M++DEK F
Sbjct: 3 KDKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMNDDEKKRFQVL 62
Query: 94 AEKRKSDYNKNMQDY 108
AE K Y +NM Y
Sbjct: 63 AEADKRRYEQNMAKY 77
>gi|195382183|ref|XP_002049810.1| GJ20542 [Drosophila virilis]
gi|194144607|gb|EDW61003.1| GJ20542 [Drosophila virilis]
Length = 397
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKS 99
PK P +++ FM + R+Q + HPN ++ K GE+W ++ED KAP++E A K K+
Sbjct: 83 PKMPLNSYVRFMNDRREQLRREHPNRTALEHT-KMIGEEWHQLTEDRKAPYMEAAAKDKA 141
Query: 100 DYNKNMQDYNKQ 111
Y + M + K+
Sbjct: 142 LYQEQMHKFLKE 153
>gi|196119855|gb|ACG69451.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 155
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
KDPN PKR PSAFF+F E+R + K HP S+ V K GE W + + D+K P
Sbjct: 39 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQP 92
>gi|157831385|pdb|1HSM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
gi|157831386|pdb|1HSN|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
Length = 79
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKS 99
PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ ++A K K
Sbjct: 3 PKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 61
Query: 100 DYNKNMQDY 108
Y K++ Y
Sbjct: 62 KYEKDIAAY 70
>gi|357605993|gb|EHJ64862.1| putative SRY-box containing protein 10 [Danaus plexippus]
Length = 212
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KRP +AF VF + R++ E P+ + A + K+ G WKS+SE EK PFV+ AEK ++
Sbjct: 46 KRPMNAFMVFAQAMRRRLSEQRPSLHN-AELSKSLGSMWKSLSEMEKLPFVKEAEKLRTQ 104
Query: 101 YNKNMQDYNKQ 111
+ + DY Q
Sbjct: 105 HKREYPDYKYQ 115
>gi|315051466|ref|XP_003175107.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS 118893]
gi|311340422|gb|EFQ99624.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS 118893]
Length = 102
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKR SA+ +F E R +E +P+ + VGK GE+WK++++ ++ P+
Sbjct: 17 KKKKDPNAPKRGLSAYMIFANEQRASVREENPSI-TFGQVGKVLGERWKALTDKQRKPYE 75
Query: 92 ERAEKRKSDYNKNMQDYNKQL 112
E+A K Y YN +L
Sbjct: 76 EKAATDKQRYEDEKAAYNSRL 96
>gi|109469081|ref|XP_001074673.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346414|ref|XP_002726304.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392346830|ref|XP_003749644.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAF +F E+R + K HP S+ V K GE W + + D+K P + A
Sbjct: 90 KDPNAPKRPPSAF-LFCSEYRPKIKGEHPAL-SIGDVTKKLGEVWTNTASDDKQPCEKMA 147
Query: 95 EKRKSDYNKNMQDY 108
K K Y K+ Y
Sbjct: 148 AKLKEKYEKDTAAY 161
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|444729306|gb|ELW69730.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPP AFF+F E+ + + HP + V K GE W + + D+ P+ ++A
Sbjct: 39 KDPNAPKRPPLAFFLFCSEYHPKIRGEHPGL-YIGDVAKKLGEMWTNTAADDTQPYEKKA 97
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 98 AKLKEKYEKDIAAY 111
>gi|68063985|ref|XP_673987.1| high mobility group protein [Plasmodium berghei strain ANKA]
gi|56492229|emb|CAH99818.1| high mobility group protein, putative [Plasmodium berghei]
Length = 96
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP+ PKR SA+ F +E R + P+ +K VATVGK GE W + E EKAP+ ++
Sbjct: 16 KDPHAPKRSLSAYMFFAKEKRAEIITRDPSLSKDVATVGKMIGEAWNKLDEREKAPYEKK 75
Query: 94 AEKRKSDYNKNMQDYNK 110
A++ K Y K +Y K
Sbjct: 76 AQEDKIRYEKEKMEYAK 92
>gi|448516014|ref|XP_003867470.1| Nhp10 protein [Candida orthopsilosis Co 90-125]
gi|380351809|emb|CCG22032.1| Nhp10 protein [Candida orthopsilosis]
Length = 335
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 35 KDPNKPKRPPSAFFVFMEE----FRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
+DP+ PKRP +A+ +F E+ R+Q +E NN + KA E WK++SE+++ PF
Sbjct: 161 RDPDLPKRPTNAYLLFCEQEKERLRQQQQEDPENN--TRDLSKAMTEAWKALSEEDRKPF 218
Query: 91 VERAEKRKSDYNKNMQDYNK 110
+ E+ + Y K M +YN+
Sbjct: 219 YKLYEEDRVRYQKEMAEYNQ 238
>gi|167388437|ref|XP_001738566.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165898168|gb|EDR25112.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 395
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KD NKPK+P +A+ +F E Q+K+ P+ K ++ +GK G +WK + E++K ++++
Sbjct: 103 KDENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPEEQKKKYIDQY 161
Query: 95 EKRKSDYNKNMQDYNKQ 111
K++YN +++Y+ Q
Sbjct: 162 YASKAEYNDKLKEYDAQ 178
>gi|148703464|gb|EDL35411.1| mCG50005 [Mus musculus]
Length = 206
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
DPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + +K P+
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAAKDKQPY 144
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ +F++ ++ K+ HP+ + + + K E+W +MS EK F A
Sbjct: 5 DPKKPRGKMSSYALFVKTCWEEHKKKHPDASVNFSGFSKKCSERWNTMSAKEKGKFEGMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYEREMKTY 78
>gi|74185387|dbj|BAE30167.1| unnamed protein product [Mus musculus]
Length = 181
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|62362190|gb|AAX81532.1| amphiHMG1/2-like protein [Adineta ricciae]
Length = 142
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KA+KDPN PKRP SAFF+F ++ R K+ P+ SV + K G +WK +S+D + +
Sbjct: 10 KASKDPNAPKRPLSAFFLFSQDERPDIKKKSPSL-SVGDISKEIGSRWKKVSDDVRKRYE 68
Query: 92 ERAEKRKSDYNKNMQDYNK 110
++A K Y + +Y K
Sbjct: 69 QKAADEKKKYEVRVAEYKK 87
>gi|426215132|ref|XP_004001831.1| PREDICTED: high mobility group protein B4 [Ovis aries]
Length = 196
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ P+RPPS+F +F ++ Q K +P + SV V KA+G+ W + ++ +K P+ +RA
Sbjct: 91 DPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDVDKQPYEQRAA 149
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y + + Y Q
Sbjct: 150 LLRAKYREELSVYRNQF 166
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVER 93
+D KPK S++ F+ +R +FKE PN + EKW+S+S+ EKA +
Sbjct: 6 RDHLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEAL 65
Query: 94 AEKRKSDYNKNMQDY 108
A+ K+ Y + M +Y
Sbjct: 66 AKLDKARYQEEMMNY 80
>gi|395542387|ref|XP_003773114.1| PREDICTED: high mobility group protein B2 isoform 1 [Sarcophilus
harrisii]
gi|395542389|ref|XP_003773115.1| PREDICTED: high mobility group protein B2 isoform 2 [Sarcophilus
harrisii]
Length = 207
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++ K
Sbjct: 93 NAPKRPPSAFFLFCAEHRPKIKSEHPGL-SIGDTAKKLGELWSEQSAKDKLPYEQKVAKL 151
Query: 98 KSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KGDKARYDREMKNY 78
>gi|312281655|dbj|BAJ33693.1| unnamed protein product [Thellungiella halophila]
Length = 646
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR S F F + R K+ HP + VGK G+KW+ MS +EK P+ +A+
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKTHPG-IAFGEVGKVLGDKWRQMSAEEKEPYEAKAQ 616
Query: 96 KRKSDYNKNMQDY-NKQ--LADGVNAAEENESD 125
K Y + DY N Q L D ENESD
Sbjct: 617 VDKKRYKDEISDYKNPQPMLVD-----SENESD 644
>gi|82594869|ref|XP_725606.1| high mobility group protein [Plasmodium yoelii yoelii 17XNL]
gi|23480678|gb|EAA17171.1| high mobility group protein [Plasmodium yoelii yoelii]
Length = 105
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPF 90
K KDP+ PKR SA+ F +E R + P+ +K VATVGK GE W + E EKAP+
Sbjct: 22 KNXKDPHAPKRSLSAYMFFAKEKRAEIITRDPSLSKDVATVGKMIGEAWNKLDEREKAPY 81
Query: 91 VERAEKRKSDYNKNMQDYNK 110
++A++ K Y K +Y K
Sbjct: 82 EKKAQEDKIRYEKEKMEYAK 101
>gi|145356938|ref|XP_001422680.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582923|gb|ABP00997.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 622
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
+A KDPN PKR SA+ F R + A+P+ V V KA GEKWK+++++EK+ +
Sbjct: 515 RAKKDPNAPKRGLSAYMFFSAAKRAEITAANPSF-GVTDVAKALGEKWKTITDEEKSVYQ 573
Query: 92 ERAEKRKSDYNKNMQDY 108
++A++ K Y + M+ Y
Sbjct: 574 QQADEDKIRYEREMEAY 590
>gi|336373684|gb|EGO02022.1| hypothetical protein SERLA73DRAFT_177720 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386499|gb|EGO27645.1| hypothetical protein SERLADRAFT_461466 [Serpula lacrymans var.
lacrymans S7.9]
Length = 365
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 10/85 (11%)
Query: 27 RTAKPKA-------AKDPNKPKRPPSAFFVFMEEFRKQ---FKEAHPNNKSVATVGKAAG 76
RTA+ KA KDPN PK+P SA+F+F++ R + +E + A
Sbjct: 217 RTAQRKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRSEPALVREVFGEEQETTKQSVLAA 276
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDY 101
KW+SM++DE+ PF+ +AE+ K DY
Sbjct: 277 AKWRSMTDDERKPFLAQAEQEKLDY 301
>gi|331220978|ref|XP_003323164.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309302154|gb|EFP78745.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 106
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
+T + K KDPN PKRP SA+ F +++R++ K +P+ S +G+ G KWK +SE+E
Sbjct: 23 KTKRVKKEKDPNAPKRPLSAYMYFSQDWRERIKTENPDV-SFGEIGRLLGLKWKGLSEEE 81
Query: 87 KAPFVERAEKRKSDYNKNMQDYNK 110
K P+ + A + K + +Y +
Sbjct: 82 KKPYEDMASRDKKRHEAEKAEYER 105
>gi|340992807|gb|EGS23362.1| hypothetical protein CTHT_0010300 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 104
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR SA+ F E R +E +P S VGK GE+WK++++ ++AP+ +A
Sbjct: 21 DPNAPKRGLSAYMFFANEQRDNVREENPG-ISFGQVGKILGERWKALTDKQRAPYEAKAA 79
Query: 96 KRKSDYNKNMQDYNKQLADG 115
K Y Q YN Q ADG
Sbjct: 80 ADKKRYEDEKQAYNAQ-ADG 98
>gi|395856570|ref|XP_003800699.1| PREDICTED: high mobility group protein B1-like [Otolemur
garnettii]
Length = 161
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
KDPN PKR PSAFF+F E+R + K HP S+ V K GE W + + D+K P
Sbjct: 39 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQP 92
>gi|344253440|gb|EGW09544.1| High mobility group protein B1 [Cricetulus griseus]
Length = 169
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KD N PKRPPSAFF+F E+ + K HP S+ V K GEKW + + +K P+
Sbjct: 86 KKFKDSNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SLGDVAKKLGEKWNNTAAGDKQPYE 144
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 145 KKAAKLKEKYEKDIVAY 161
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S++ F++ ++ K+ HP+ + + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCWEEHKKKHPDASVNFSELLKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KAGKAHYEREMKTY 78
>gi|71416266|ref|XP_810170.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70874664|gb|EAN88319.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 15 SKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKA 74
S+ K G KR AKD N PKR SA+F F+ +FRK+ HP+ SV KA
Sbjct: 180 SEYKKSGGTEYKRGGGKVKAKDENAPKRSMSAYFFFVSDFRKK----HPDL-SVTETSKA 234
Query: 75 AGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
AG WK +S++ K P+ A+K K Y + M
Sbjct: 235 AGAAWKELSDEMKKPYEAMAQKDKERYQREM 265
>gi|54020668|ref|NP_112383.1| FACT complex subunit SSRP1 [Rattus norvegicus]
gi|83305804|sp|Q04931.2|SSRP1_RAT RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53734496|gb|AAH83588.1| Structure specific recognition protein 1 [Rattus norvegicus]
gi|149022436|gb|EDL79330.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
gi|149022437|gb|EDL79331.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 709
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS+++K + +AE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 96 KRKSDYNKNMQDY 108
+ +Y K M++Y
Sbjct: 602 DARREYEKAMKEY 614
>gi|790198|gb|AAC41606.1| high mobility group protein [Plasmodium falciparum]
Length = 97
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP+ PKR SA+ F +E R + P +K VATVGK GE W + E EKAPF ++A
Sbjct: 17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76
Query: 95 EKRKSDYNKNMQDY 108
++ K Y K +Y
Sbjct: 77 QEDKLRYEKEKAEY 90
>gi|384491850|gb|EIE83046.1| hypothetical protein RO3G_07751 [Rhizopus delemar RA 99-880]
Length = 101
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
++ KDP+ PKR SA+ F ++ R KE +P S +GK GE+WK++SE+EK P++
Sbjct: 25 RSKKDPSAPKRGLSAYMFFSQDQRPTVKEENPKA-SFGEIGKILGERWKALSEEEKKPYL 83
Query: 92 ERAEKRKSDY 101
++AE K Y
Sbjct: 84 KKAEDDKKRY 93
>gi|432104603|gb|ELK31215.1| High mobility group protein B1 [Myotis davidii]
Length = 201
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN+PKRPPSAFF+F E+ + K HP S+ + + GE W + + D+K P ++A
Sbjct: 90 KDPNEPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDIAEKLGEMWNNTAADDKQPHEKKA 148
Query: 95 EKRKSDYNKNM 105
K K Y K++
Sbjct: 149 AKLKEKYEKDI 159
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S+ F++ + + K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKTSSCAFFVQTYWDEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KADKARYKREMKTY 78
>gi|70946314|ref|XP_742884.1| high mobility group protein [Plasmodium chabaudi chabaudi]
gi|56522109|emb|CAH79930.1| high mobility group protein, putative [Plasmodium chabaudi
chabaudi]
Length = 102
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP+ PKR SA+ F +E R + P+ +K VATVGK GE W + E EKAP+ ++
Sbjct: 22 KDPHAPKRSLSAYMFFAKEKRAEIITRDPSLSKDVATVGKMIGEAWNKLDEREKAPYEKK 81
Query: 94 AEKRKSDYNKNMQDYNK 110
A++ K Y K +Y K
Sbjct: 82 AQEDKLRYEKEKMEYAK 98
>gi|332017611|gb|EGI58308.1| Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A [Acromyrmex echinatior]
Length = 1249
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 67/136 (49%), Gaps = 11/136 (8%)
Query: 12 GTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATV 71
G + G + + KA +D P++P S +F+F+ + R++ + +P+ + +
Sbjct: 49 GVKRSATATGNTPNRTKKRKKAPRDATAPRQPLSGYFLFLNDRREKVRNQNPS-LTFTEI 107
Query: 72 GKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK----QLADGVNAAEENESDKS 127
K +W + D+K +++ AE+ K YN+ DY + +L + + +NE+ K
Sbjct: 108 TKLLAAEWSKLPIDQKQRYLDAAEQDKERYNREFSDYKQTEAYRLFNEKQSERQNENKKE 167
Query: 128 K------SEVNDEDDE 137
+ +E ND+D++
Sbjct: 168 RNGTDINTEQNDKDND 183
>gi|444510699|gb|ELV09703.1| High mobility group protein B2 [Tupaia chinensis]
Length = 233
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN PKRPPSAFF+F E + K HP T K GE W S +K P ++A K
Sbjct: 92 PNVPKRPPSAFFLFCSEHHPKIKSEHPGLSIGDTEKKKLGEMWSEQSAKDKQPCEQKAAK 151
Query: 97 RKSDYNKNMQDY 108
K Y K++ Y
Sbjct: 152 LKKKYEKDIAAY 163
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
D NKP+ S++ F++ ++ K+ HP++ + A K EKWK+MS EK+ F + A
Sbjct: 5 DHNKPRGKMSSYAFFVQTCGEEHKKKHPDSSVNFAEFSKKCSEKWKAMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|115396468|ref|XP_001213873.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
gi|114193442|gb|EAU35142.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
Length = 101
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR SA+ F E R + +E +P + VGK GEKWK++SED++ P+ E+A
Sbjct: 19 DPNAPKRGLSAYMFFANENRDKVREENPG-ITFGQVGKMLGEKWKALSEDDRRPYEEKAA 77
Query: 96 KRKSDYNKNMQDYN 109
K Y YN
Sbjct: 78 ADKKRYEDEKASYN 91
>gi|407035464|gb|EKE37713.1| HMG (high mobility group) box domain containing protein [Entamoeba
nuttalli P19]
Length = 369
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KD NKPK+P +A+ +F E Q+K+ P+ K ++ +GK G +WK + E++K ++++
Sbjct: 102 KDENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPEEQKKKYIDQY 160
Query: 95 EKRKSDYNKNMQDYNKQ 111
K++YN +++Y+ Q
Sbjct: 161 YASKAEYNDKLKEYDAQ 177
>gi|325181279|emb|CCA15692.1| high mobility group protein putative [Albugo laibachii Nc14]
Length = 231
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R +A KDP+ PKR SAF + + R Q K+ +P+ K+ + K GE W ++ +
Sbjct: 110 RVPNKRAKKDPSAPKRASSAFLFYSQVMRPQLKKENPDLKNT-DISKRLGEAWSKATDVQ 168
Query: 87 KAPFVERAEKRKSDYNKNMQDYN 109
KAP+VE+ + +S Y + M+++N
Sbjct: 169 KAPYVEKEREDRSRYKREMEEWN 191
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
K P PKR S + +F + R++ K P + V V +A + W MSEDEK P+ A
Sbjct: 32 KAPGAPKRGKSPYILFSMDKREEIKSHMPADAKVTDVMRAIADAWSKMSEDEKQPWKSAA 91
Query: 95 EKRKSDYNKNMQDYNKQL 112
E K Y + M Y+ L
Sbjct: 92 EVDKQRYEEEMASYDGPL 109
>gi|110287688|sp|Q4PBZ9.2|NHP6_USTMA RecName: Full=Non-histone chromosomal protein 6
Length = 99
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 14 DSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK 73
D+K KS + KRT K A KDP+ PKRP SA+ F ++ R++ K A+P VG+
Sbjct: 5 DTKTKSSTS-TQKRTTK--AKKDPDAPKRPLSAYMFFSQDQRERVKNANPE-AGFGEVGR 60
Query: 74 AAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
G KWK MSE EK P+ + A + K+ YNK+
Sbjct: 61 LLGAKWKEMSEAEKKPYNDMANRDKARAEAEKAAYNKR 98
>gi|194068385|dbj|BAG55013.1| high mobility group 1 protein [Saccostrea kegaki]
Length = 201
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 6/79 (7%)
Query: 35 KDPN---KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KDP+ KPKRP SA+F F+ +FR++ K + ++K + K AGE W+++ ++EK PF
Sbjct: 90 KDPSEAGKPKRPQSAYFCFLADFREKMKGKNIDHKEII---KMAGEAWRNLDDNEKKPFE 146
Query: 92 ERAEKRKSDYNKNMQDYNK 110
+ A+K + Y + + D+ +
Sbjct: 147 KLAQKEQEKYEQALADWRR 165
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 23 RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSM 82
R G + + AKDPNKPKR SA+F F+ + R+ K + +A K + KW M
Sbjct: 2 RVGAEGGRKRKAKDPNKPKRSTSAYFYFLGKMREDAKSSGKPITKIAEFTKESSAKWAKM 61
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDY 108
++ +K PF ++A K Y+ M Y
Sbjct: 62 TDKDKEPFNKKAAADKKRYDAEMAVY 87
>gi|440631791|gb|ELR01710.1| non-histone chromosomal protein 6 [Geomyces destructans 20631-21]
Length = 101
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 26 KRTAKP---KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSM 82
KR +KP K KDPN PKR SA+ F +E R +E +P S VGK GE+WK++
Sbjct: 8 KRASKPRGEKKKKDPNAPKRGLSAYMFFAQEQRDNVREENPGI-SFGQVGKVLGERWKAL 66
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDYN 109
++ ++ P+ +A++ K Y YN
Sbjct: 67 NDKQRTPYETKAQEDKKRYEDEKASYN 93
>gi|412985385|emb|CCO18831.1| CG4797 [Bathycoccus prasinos]
Length = 669
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMS 83
+G AK K KDPN PKRP S + +F E R + KE +P+ S+ V K G +WKS++
Sbjct: 564 SGSPHAKKKKEKDPNAPKRPLSTYMIFSAEMRAKVKEENPDF-SITDVAKELGVRWKSVT 622
Query: 84 EDEKAPFVERAEKRK 98
++EK + E A+K K
Sbjct: 623 DEEKVKYEELAKKDK 637
>gi|429860623|gb|ELA35353.1| nucleosome binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 103
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMS 83
A + K + KDPN PKR SA+ F E R+ +E +P S VGK GE+WK+++
Sbjct: 10 AAGKVEKKRGKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKILGERWKALN 68
Query: 84 EDEKAPFVERAEKRKSDYNKNMQDYN 109
+ ++AP+ +A K Y Q YN
Sbjct: 69 DKQRAPYEAKAAADKKRYEDEKQAYN 94
>gi|157129203|ref|XP_001655323.1| high mobility group B1, putative [Aedes aegypti]
gi|108872320|gb|EAT36545.1| AAEL011380-PA [Aedes aegypti]
Length = 278
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 20 KGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKW 79
KG G R K KA KDPN PKR SAFF F + R + K +P V + K G KW
Sbjct: 113 KGTVVG-RGKKRKAFKDPNAPKRSLSAFFWFCHDERNKVKALNPEY-GVGDIAKELGRKW 170
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
M + K+ + + AEK K+ Y + M +Y
Sbjct: 171 SDMDAEVKSKYEQMAEKDKARYEQEMTEY 199
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 9 DAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV 68
D V + ++ + + + KD NKP+ +A+ F++ R++ K+ HP + +
Sbjct: 10 DRVTNQTHVQVQNNAVQSKITNSRPVKD-NKPRGRMTAYAFFVQTCREEHKKKHPEEQVI 68
Query: 69 -ATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
A + E+WK+M + EK F E AEK K Y MQ+Y
Sbjct: 69 FAEFSRKCAERWKTMLDKEKQRFHEMAEKDKQRYELEMQNY 109
>gi|405117802|gb|AFR92577.1| hmg1 [Cryptococcus neoformans var. grubii H99]
Length = 907
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 13/82 (15%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQF--------KEAHPNNKSVATVGKAAGEKWKSMSEDE 86
KDPN PK+P SA+F+F++ R+ EA +SV A EKW+S+++DE
Sbjct: 553 KDPNAPKKPLSAYFLFLKAIRENSDIRAQVWGTEAETTKQSVM-----AAEKWRSLTDDE 607
Query: 87 KAPFVERAEKRKSDYNKNMQDY 108
K P++E+AE K Y + Y
Sbjct: 608 KRPYLEQAEHDKQTYETARKQY 629
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 31 PKAAKDPNKPKRPPSAFFVFM-----------EEFRKQFKEAHPNNKSVATVGKAAGEKW 79
PKA + PK+ PS++ +F E R +HP +VA + K AG +
Sbjct: 434 PKAKSHLHPPKQAPSSWQLFFADELAKAKAAEPESRSPGGTSHPQKLNVAQIAKEAGVAY 493
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112
++SE+ K + ER ++ + Y K + + L
Sbjct: 494 ANLSEERKKYYAERVKEHREIYAKELAAWQATL 526
>gi|321249260|ref|XP_003191397.1| protein HMG1 [Cryptococcus gattii WM276]
gi|317457864|gb|ADV19610.1| HMG1, putative [Cryptococcus gattii WM276]
Length = 926
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 13/82 (15%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQF--------KEAHPNNKSVATVGKAAGEKWKSMSEDE 86
KDPN PK+P SA+F+F++ R+ EA +SV A EKW+S+++DE
Sbjct: 572 KDPNAPKKPLSAYFLFLKAIRENSDIRAQVWGTEAETTKQSVM-----AAEKWRSLTDDE 626
Query: 87 KAPFVERAEKRKSDYNKNMQDY 108
K P++E+AE K Y + Y
Sbjct: 627 KRPYLEQAEHDKQTYETARKQY 648
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 31 PKAAKDPNKPKRPPSAFFVFM-----------EEFRKQFKEAHPNNKSVATVGKAAGEKW 79
PKA + PK+ PS++ +F E R +HP +VA + K AG +
Sbjct: 453 PKAKSHLHPPKQAPSSWQLFFADELAKAKAAEPESRSPGGTSHPQKLNVAQIAKEAGVAY 512
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112
++S + K + ER ++ + Y K + + L
Sbjct: 513 ANLSAERKKYYAERVKEHREIYAKELAAWQATL 545
>gi|118344004|ref|NP_001071827.1| FACT complex subunit SSRP1 [Ciona intestinalis]
gi|110287972|sp|Q4H2R2.1|SSRP1_CIOIN RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Structure-specific recognition protein 1
gi|70571284|dbj|BAE06715.1| transcription factor protein [Ciona intestinalis]
Length = 704
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRP SA+F+++ E R +FK A SV + K AG++WK + DEK F
Sbjct: 549 KDPNAPKRPQSAYFLWLNENRGRFK-AENKGISVTELTKLAGKEWKKIDPDEKQKFERMY 607
Query: 95 EKRKSDYNKNMQDYNKQ 111
+K K ++ M++Y Q
Sbjct: 608 QKSKVKFDAAMKEYKSQ 624
>gi|328769557|gb|EGF79601.1| hypothetical protein BATDEDRAFT_89692 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 17 LKSKGARAGKRTAK-----PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATV 71
+ K A AG + AK K+ KDP+ PKRP SAF +F +E R + +E +P+ S +
Sbjct: 1 MAPKQAMAGTKVAKRGDDKKKSRKDPDAPKRPLSAFMIFSKENRPRIREENPDA-SFGDL 59
Query: 72 GKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
GK G W+ +++ +K + ++A++ K Y + M Y
Sbjct: 60 GKLLGAAWRELNDKDKQVYTDKADEDKGRYEREMSTY 96
>gi|412992276|emb|CCO19989.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 94
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR SA+F FM + R + +A+P+ K V VGK GE W++MS+ EK P+ ++A+
Sbjct: 20 DPNAPKRNLSAYFFFMNDQRAKVVKANPDMK-VTEVGKKLGELWRAMSDSEKVPYNKKAD 78
Query: 96 KRKSDYNK 103
K Y K
Sbjct: 79 ADKVRYEK 86
>gi|400599237|gb|EJP66941.1| HMG box protein [Beauveria bassiana ARSEF 2860]
Length = 96
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
G R K +A KDPN PKR SA+ F E R+ +E +P S VGK GE+WK++S+
Sbjct: 11 GARVEKKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSD 69
Query: 85 DEKAPFVERAEKRKSDYNKNMQDYN 109
++ P+ +A K Y YN
Sbjct: 70 KQRTPYEAKAAADKKRYEDEKAAYN 94
>gi|354543436|emb|CCE40155.1| hypothetical protein CPAR2_101930 [Candida parapsilosis]
Length = 315
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 29 AKPKAAKDPNKPKRPPSAFFVFMEE----FRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
AK +DP+ PKRP +A+ +F E+ R+Q +E NN + KA E WK +SE
Sbjct: 155 AKSAKHRDPDLPKRPTNAYLLFCEQEKERLRQQQQEDPENN--TRDLSKAMTEAWKKLSE 212
Query: 85 DEKAPFVERAEKRKSDYNKNMQDYNKQ 111
++K PF + E+ + Y K M +Y K+
Sbjct: 213 EDKQPFYKLYEEDRIRYQKEMVEYTKK 239
>gi|432117313|gb|ELK37700.1| Putative high mobility group protein B3-like protein [Myotis
davidii]
Length = 147
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+KAD V D ++ G A+ GK+ K+PN PKRP S FF+F EFR + K +P
Sbjct: 64 AKADKVHYDQEMTDYGPAKGGKK-------KEPNVPKRPTSGFFLFCSEFRPKIKSTNPG 116
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
+ S+ V K GE W ++S+ E + R +
Sbjct: 117 S-SIGDVAKKLGEMWNNLSDSESSLTTIRLQ 146
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFV 91
A DP KP+ SA+ F++ R++ K+ +P S A K E+WK+MS +K+ F
Sbjct: 2 AKSDPKKPQGKMSAYAFFVQTCREEHKKKNPEVPVSFAEFSKKCSERWKTMSAKKKSKFD 61
Query: 92 ERAEKRKSDYNKNMQDY 108
E A+ K Y++ M DY
Sbjct: 62 EMAKADKVHYDQEMTDY 78
>gi|238880555|gb|EEQ44193.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 310
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
A+DP+ PKRP +A+ +F E +++ K+ PN + + K+ E WK++SE+ + P+ +
Sbjct: 148 ARDPDLPKRPTNAYLIFCEMEKERIKQDDPN---ASDLSKSMTEAWKNLSEERRRPYYKL 204
Query: 94 AEKRKSDYNKNMQDYNK 110
E + Y + M +YN+
Sbjct: 205 YEDDRIRYQREMAEYNQ 221
>gi|344235657|gb|EGV91760.1| hypothetical protein I79_006916 [Cricetulus griseus]
Length = 139
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P
Sbjct: 16 KDPNAPKRPPSAFFLFCSEYRPKTK-GHPGL-SIGDVAKKLGETWSNTAADDKQP 68
>gi|156848961|ref|XP_001647361.1| hypothetical protein Kpol_1018p32 [Vanderwaltozyma polyspora DSM
70294]
gi|156118047|gb|EDO19503.1| hypothetical protein Kpol_1018p32 [Vanderwaltozyma polyspora DSM
70294]
Length = 194
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKS 99
PKRP +F +F++ R + +P+ K + K GE+W+++SE EK PFVE EK
Sbjct: 53 PKRPIPSFMLFVKSIRGNLTQEYPHYKP-TEIAKLCGERWRALSEYEKRPFVEEYEKALE 111
Query: 100 DYNKNMQDYNKQL 112
DY + K L
Sbjct: 112 DYKIEKLAFEKTL 124
>gi|58258723|ref|XP_566774.1| HMG1 [Cryptococcus neoformans var. neoformans JEC21]
gi|134106799|ref|XP_777941.1| hypothetical protein CNBA4100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260641|gb|EAL23294.1| hypothetical protein CNBA4100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222911|gb|AAW40955.1| HMG1, putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 895
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 13/82 (15%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQF--------KEAHPNNKSVATVGKAAGEKWKSMSEDE 86
KDPN PK+P SA+F+F++ R+ EA +SV A EKW+S+++DE
Sbjct: 541 KDPNAPKKPLSAYFLFLKAIRENSDIRAQVWGTEAETTKQSVM-----AAEKWRSLTDDE 595
Query: 87 KAPFVERAEKRKSDYNKNMQDY 108
K P++E+AE K Y + Y
Sbjct: 596 KRPYLEQAEHDKQTYETARKQY 617
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 31 PKAAKDPNKPKRPPSAFFVFM-----------EEFRKQFKEAHPNNKSVATVGKAAGEKW 79
PKA + PK+ PS++ +F E R +HP +VA + K AG +
Sbjct: 422 PKAKSHLHPPKQAPSSWQLFFADELAKAKAAEPESRSPGGTSHPQKLNVAQIAKEAGVAY 481
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112
++SE+ K + ER ++ + Y K + + L
Sbjct: 482 ANLSEERKKYYAERVKEHREIYAKELAAWQATL 514
>gi|430812930|emb|CCJ29675.1| unnamed protein product [Pneumocystis jirovecii]
Length = 281
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 29 AKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKA 88
K + A+DPN+PKRP SA+ F + R+ K++ + + + E+W +++DE+
Sbjct: 97 VKKRKARDPNQPKRPLSAYLSFQLKTRQAVKDSLGESATQKEILSEIAERWSKLNDDERK 156
Query: 89 PFVERAEKRKSDYNKNMQDY 108
PF E A K + Y+K M Y
Sbjct: 157 PFEEEARKAREQYDKEMTAY 176
>gi|380476672|emb|CCF44585.1| non-histone chromosomal protein 6 [Colletotrichum higginsianum]
Length = 96
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K +A KDPN PKR SA+ F E R+ +E +P S VGK GE+WK+++E ++ P
Sbjct: 16 KKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKILGERWKALNEKQRQP 74
Query: 90 FVERAEKRKSDYNKNMQDYN 109
+ +A K Y Q YN
Sbjct: 75 YEAKAATDKKRYEDEKQAYN 94
>gi|229594979|ref|XP_001020474.3| HMG box family protein [Tetrahymena thermophila]
gi|225566454|gb|EAS00229.3| HMG box family protein [Tetrahymena thermophila SB210]
Length = 265
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN PK+P SA+ +F + + + K +P+ S + + K G++W+ +S+D+K ++++ E+
Sbjct: 57 PNAPKKPMSAYLIFCQTRQPEIKAKNPD-LSFSEISKVVGQEWRDLSQDKKQGYIKKEEQ 115
Query: 97 RKSDYNKNMQDYNK 110
K +YN + ++NK
Sbjct: 116 LKKEYNSKLAEFNK 129
>gi|427787117|gb|JAA59010.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 208
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
G ++ K K AKDPN PKRP SAFF F + R ++ +P++ SV V K G +W + +
Sbjct: 81 GDKSKKRKRAKDPNAPKRPLSAFFWFCNDERPNVRQENPDS-SVGEVAKELGRRWNEVGD 139
Query: 85 DEKAPFVERAEKRKSDYNKNMQDY 108
D KA + A K K+ Y K ++ Y
Sbjct: 140 DVKAKYEGLAAKDKARYEKELKAY 163
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
+KP+ SA+ F++ R++ K+ HPN N A K E+WK+MS+ EK F + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSDGEKKRFHQMADK 64
Query: 97 RKSDYNKNMQDY 108
K ++ M DY
Sbjct: 65 DKKRFDTEMADY 76
>gi|256090348|ref|XP_002581158.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
gi|350646061|emb|CCD59339.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
Length = 293
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP+ PKR SAFF F + FR + + HP+ K V+ + K G +W+ S+ EK + R
Sbjct: 93 IKDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSDKEK--YERR 149
Query: 94 AEKRKSDYNKNMQDYNKQLADGVNAA---EENESDKSKSEVNDEDDEEGSGE 142
A+ K Y ++M+ Y L A ++ +S++ S ++D+ + GE
Sbjct: 150 AQNDKLRYEQDMEKYKAGLYVATKRARVGDQTKSNEILSCLHDQSHHKELGE 201
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVE 92
KD N+PK P + + F++ R++ ++ HP N + K EKWK M+ +++ F E
Sbjct: 3 VKDKNRPKPPMTPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCFEE 62
Query: 93 RAEKRKSDYNKNMQDY 108
A+ +N+ M Y
Sbjct: 63 MAKLDTERFNREMAHY 78
>gi|392343502|ref|XP_003754903.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+PPS+F +F ++ ++ KE HPN +VA V KAAG W SE +K P+ ERA ++ Y
Sbjct: 95 KPPSSFLLFSQDHFEEIKEQHPN-WTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKY 153
Query: 102 NKNMQDYNKQLADG 115
+ + Y +Q G
Sbjct: 154 LEEREAYYQQCQRG 167
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S + FM +FR Q +E PN T + EKWK++S+ EK + A++
Sbjct: 8 RPKVNVSPYVHFMMDFRNQMREQQPNIYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRD 67
Query: 98 KSDYNKNMQDYN 109
K Y + M++Y+
Sbjct: 68 KDRYQREMRNYS 79
>gi|97976795|tpe|CAJ29302.1| TPA: putative high mobility group B3 protein [Schistosoma mansoni]
Length = 246
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP+ PKR SAFF F + FR + + HP+ K V+ + K G +W+ S+ EK + R
Sbjct: 93 IKDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSDKEK--YERR 149
Query: 94 AEKRKSDYNKNMQDYNKQLADGVNAA---EENESDKSKSEVNDEDDEEGSGE 142
A+ K Y ++M+ Y L A ++ +S++ S ++D+ + GE
Sbjct: 150 AQNDKLRYEQDMEKYKAGLYVATKRARVGDQTKSNEILSCLHDQSHHKELGE 201
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVE 92
KD N+PK P + + F++ R++ ++ HP N + K EKWK M+ +++ F E
Sbjct: 3 VKDKNRPKPPMTPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCFEE 62
Query: 93 RAEKRKSDYNKNMQDY 108
A+ +N+ M Y
Sbjct: 63 MAKLDTERFNREMAHY 78
>gi|407850184|gb|EKG04681.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 15 SKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKA 74
S+ K G KR AKD N PKR SA+F F+ +FRK+ HP+ SV KA
Sbjct: 180 SEYKKSGGTEYKRGGGKVKAKDENAPKRSMSAYFFFVGDFRKK----HPDL-SVTETSKA 234
Query: 75 AGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
AG WK +S++ K P+ A+K K Y + M
Sbjct: 235 AGAAWKELSDEMKKPYEAMAQKDKERYQREM 265
>gi|344300446|gb|EGW30767.1| Non-histone chromosomal protein 6 [Spathaspora passalidarum NRRL
Y-27907]
Length = 93
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDP+ PKR SA+ F E R + +P S VGK GEKWK+++ DEK P+ +A
Sbjct: 15 KDPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALTADEKVPYENKA 73
Query: 95 EKRKSDYNKNMQDYNKQ 111
E K Y K +Y K+
Sbjct: 74 ETDKKRYEKEKAEYAKR 90
>gi|359472717|ref|XP_003631191.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group B protein
6-like [Vitis vinifera]
Length = 502
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP K K P S FF F +E R +K+V + K AGE+WK+M+E +K P+ E A+
Sbjct: 344 DPLKLKHPISTFFXFSKERRAALL---AEDKNVLEITKIAGEEWKNMTEKQKRPYEEIAK 400
Query: 96 KRKSDYNKNMQDYNKQ 111
K K+ Y + M+ Y +Q
Sbjct: 401 KNKAKYQEEMKLYKQQ 416
>gi|3600053|gb|AAC35540.1| contains similarity to HMG (high mobility group) box (Pfam:
HMG_box.hmm, scores: 70.67, 53.09 and 80.15)
[Arabidopsis thaliana]
Length = 401
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S++F+F ++ RK E HP NN +TV KW + E+EK + +
Sbjct: 323 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINN---STVTAHISLKWMELGEEEKQVYNSK 379
Query: 94 AEKRKSDYNKNMQDYNK 110
A + Y K +++YNK
Sbjct: 380 AAELMEAYKKEVEEYNK 396
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
DP KPK+P SA+ ++ E R K NKSV V K AGE+WK++SE++KAP+
Sbjct: 254 DPLKPKQPISAYLIYANERRAALK---GENKSVIEVAKMAGEEWKNLSEEKKAPY 305
>gi|83588749|gb|ABB02374.2| Sox8 [Salmo salar]
Length = 356
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 38 NKP--KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
NKP KRP +AF V+ + R++ + +P+ + A + K G+ W+ +SE+EK PFVE AE
Sbjct: 96 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAE 154
Query: 96 KRKSDYNKNMQDYNKQ 111
+ + + K+ DY Q
Sbjct: 155 RLRVQHKKDHPDYKYQ 170
>gi|407926962|gb|EKG19868.1| High mobility group HMG1/HMG2 [Macrophomina phaseolina MS6]
Length = 106
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ F + R + +E +P K VGK GE+WK++SE ++AP+ +A
Sbjct: 22 KDPNAPKRGLSAYMFFANDMRDKVREENPGIK-FGEVGKILGERWKALSEKQRAPYEAKA 80
Query: 95 EKRKSDYNKNMQDYN 109
K Y YN
Sbjct: 81 ANDKKRYEDEKAAYN 95
>gi|238586980|ref|XP_002391336.1| hypothetical protein MPER_09251 [Moniliophthora perniciosa FA553]
gi|215455859|gb|EEB92266.1| hypothetical protein MPER_09251 [Moniliophthora perniciosa FA553]
Length = 269
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
GKR K KDPN PKRP S++ ++ E R+ KE HP N S A + ++W MSE
Sbjct: 67 GKR----KRTKDPNAPKRPASSYIIYQNEVRQTIKEQHP-NLSPAEIRTLISQEWAKMSE 121
Query: 85 DEKAPFVERAEKRKSDYN 102
+EK + + A+ K Y
Sbjct: 122 EEKEYYRKNAQIAKDKYT 139
>gi|149245546|ref|XP_001527250.1| hypothetical protein LELG_02079 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449644|gb|EDK43900.1| hypothetical protein LELG_02079 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 187
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K +DP+ PKRP +A+ VF E+ +++ K P +K ++ + E WKS+SE+E+ P+
Sbjct: 63 KKPRDPDLPKRPSNAYLVFCEQEKERLKLDDPESKDLS---RTMTEAWKSLSEEERRPYY 119
Query: 92 ERAEKRKSDYNKNMQDYNKQ 111
+ E + Y + M +YN++
Sbjct: 120 KLYEDDRVRYQREMDEYNRK 139
>gi|149052121|gb|EDM03938.1| SRY-box containing gene 8 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 241
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
+ +G G AKP KRP +AF V+ + R++ + +P+ + A + K G
Sbjct: 83 MPVRGGGGGTLKAKPHV-------KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLG 134
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
+ W+ +SE EK PFVE AE+ + + K+ DY Q
Sbjct: 135 KLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQ 169
>gi|351708060|gb|EHB10979.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 241
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKR PSAFF+F E+ + K +P S+ V K GE W + + D+K P+
Sbjct: 86 KKFKDPNAPKRLPSAFFLFCSEYHPKIKGEYP-GLSIGDVAKKLGEIWNNTAADDKQPYK 144
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 145 KKAAKLKEKYEKDITAY 161
>gi|351704050|gb|EHB06969.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 156
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F ++R + K HP S K +GE W S +K P+ ++ K
Sbjct: 43 NAPKRPPSAFFLFCSKYRPKIKSEHPGL-STGDTAKKSGEMWSEQSAKDKQPYEQKGAKL 101
Query: 98 KSDYNKNMQDYN 109
Y K++ Y+
Sbjct: 102 MEKYEKDIAAYH 113
>gi|302411796|ref|XP_003003731.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|261357636|gb|EEY20064.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|346978438|gb|EGY21890.1| nucleosome binding protein [Verticillium dahliae VdLs.17]
Length = 102
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMS 83
AG++ AK +A KDPN PKR SA+ F E R+ +E +P S VGK GE+WK+++
Sbjct: 10 AGEKKAK-RAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWKALN 67
Query: 84 EDEKAPFVERAEKRKSDYNKNMQDYNKQLAD 114
E ++ P+ +A K Y YN + D
Sbjct: 68 EKQRGPYEAKAVADKKRYEDEKAAYNAEAED 98
>gi|402077455|gb|EJT72804.1| non-histone chromosomal protein 6 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 101
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 22 ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKS 81
A+ G +T K + KDP PKR SA+ F E R+ +E +P S VGK GE+WK+
Sbjct: 6 AKKGAKTEKRRGKKDPLAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKA 64
Query: 82 MSEDEKAPFVERAEKRKSDYNKNMQDYN 109
+S+ ++AP+ +A K Y YN
Sbjct: 65 LSDKQRAPYDAKAAADKKRYEDEKAAYN 92
>gi|302652822|ref|XP_003018251.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
gi|291181876|gb|EFE37606.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
Length = 132
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR SA+ +F E R +E +PN + VGK GE+WK++S+ ++ P+ E+A
Sbjct: 60 DPNAPKRGLSAYMIFANEQRAAVREENPN-ITFGQVGKVLGERWKALSDKQRVPYEEKAA 118
Query: 96 KRKSDYNKNMQDYN 109
K Y YN
Sbjct: 119 TDKQRYEDEKAAYN 132
>gi|344243983|gb|EGW00087.1| High mobility group protein B4 [Cricetulus griseus]
Length = 106
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ P++PPS+F +F + Q K +PN SV V KA G+ W S +K P+ ++A
Sbjct: 15 DPHAPRQPPSSFLLFSLDHYAQLKHDNPN-WSVVQVAKATGKMWSMTSNVDKQPYEQKAA 73
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y +++++Y KQ
Sbjct: 74 LLRAKYFEDVENYRKQF 90
>gi|170056683|ref|XP_001864141.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876428|gb|EDS39811.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 372
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 15 SKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKA 74
S + KG GK K KA KDPN PKR SAFF F E R + K +P V + K
Sbjct: 208 SYVPPKGTVVGK-GKKRKAFKDPNAPKRSLSAFFWFCHEERNKVKALNP-EYGVGDIAKE 265
Query: 75 AGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
G KW M + K+ + + AEK K+ Y M +Y
Sbjct: 266 LGRKWSDMDAEVKSRYEQMAEKDKARYEAEMTEY 299
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV-ATVGKAAGEKWKSMSEDEKAPFVERAEK 96
NKP+ +A+ F++ R++ K+ HP + + A + E+WK+M + EK F E AEK
Sbjct: 138 NKPRGRMTAYAFFVQTCREEHKKKHPEEQVIFAEFSRKCAERWKTMLDKEKQRFHEMAEK 197
Query: 97 RKSDYNKNMQDY 108
K+ Y MQ Y
Sbjct: 198 DKARYELEMQSY 209
>gi|349806433|gb|AEQ18689.1| putative ssrp1 protein [Hymenochirus curtipes]
Length = 280
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDP+ PKRP SA+ ++ R++ K +P S+ + K AGE WKSM+ ++K + RA
Sbjct: 206 KDPSAPKRPMSAYMPWLNASREKIKGENPG-ISITDLSKKAGEIWKSMNREKKEEWDRRA 264
Query: 95 EKRKSDYNKNMQDY 108
E+ K DY K M++Y
Sbjct: 265 EEAKRDYEKAMKEY 278
>gi|148690482|gb|EDL22429.1| SRY-box containing gene 8, isoform CRA_a [Mus musculus]
Length = 320
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
+ +G G AKP KRP +AF V+ + R++ + +P+ + A + K G
Sbjct: 83 MPVRGGGGGTLKAKPHV-------KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLG 134
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
+ W+ +SE EK PFVE AE+ + + K+ DY Q
Sbjct: 135 KLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQ 169
>gi|322801400|gb|EFZ22061.1| hypothetical protein SINV_03283 [Solenopsis invicta]
Length = 412
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN+ KRP +AF V+ + R+Q E P+ + A + K G+KWK ++E EK PF++ AE
Sbjct: 22 PNRVKRPMNAFMVWSQMQRRQICEVQPDMHN-AEISKTLGKKWKQLTEHEKQPFIQEAET 80
Query: 97 RKSDYNKNMQDY 108
+ + K Y
Sbjct: 81 LRKFHQKEYPTY 92
>gi|255637700|gb|ACU19173.1| unknown [Glycine max]
Length = 478
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 18 KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGE 77
K+K R K+ K DPN+PK+P S+F + +E RK +E P S +T+
Sbjct: 374 KTKQNRQKKKQNKDDKNSDPNRPKKPASSFILLSKEARKTLQEERPGI-STSTLNALVSL 432
Query: 78 KWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLA 113
KWK +SE+++ + +A K Y K +++YNK LA
Sbjct: 433 KWKELSEEDRQFWNGQASKAMDAYKKELEEYNKSLA 468
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
P +P+ P SA+F+F + R NK+ V K E+WK+M+E++K P+ E A+K
Sbjct: 264 PLRPRHPMSAYFLFTNDRRAAL---AAENKNFLEVPKITSEEWKNMTEEQKRPYEEMAKK 320
Query: 97 RKSDYNKNMQDY 108
K Y M+ Y
Sbjct: 321 NKEQYALEMEAY 332
>gi|384490121|gb|EIE81343.1| hypothetical protein RO3G_06048 [Rhizopus delemar RA 99-880]
Length = 286
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R K K + D + PK P SA+ F + R K+ PN+K V + + G KW+SM+E+E
Sbjct: 181 RGRKKKKSTDTSLPKHPMSAYLHFAKTMRPIIKKNSPNSKLVE-ISQQIGLKWRSMTENE 239
Query: 87 KAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENES 124
P++E A + K+ Y + M+ D VN +EE +S
Sbjct: 240 MRPWIEMANEDKARYAREMK-------DRVNCSEELDS 270
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT--VGKAAGEKWKSMSEDEKAPFVERA 94
P K KRPP+A+ +F + R+Q NN+ + + + K + WK +S +E+ + +
Sbjct: 56 PKKVKRPPNAYLLFNRDMRRQM-----NNQGMTSGEISKNISQIWKQLSNEERNKYFKEE 110
Query: 95 EKRKSDYN 102
+ K YN
Sbjct: 111 SELKQQYN 118
>gi|449706835|gb|EMD46595.1| high mobility group (HMG) box domain containing protein, partial
[Entamoeba histolytica KU27]
Length = 76
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEK 87
PN+PKRPP+ +F+++ E R KE HP+ + + K A E+WK++ E+EK
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDIR-FTEISKVASEQWKALGEEEK 75
>gi|444519462|gb|ELV12862.1| High mobility group protein B1 [Tupaia chinensis]
Length = 157
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
KDP+ PKRPPSAFF+F E+ Q K HP+ S+ K GE W + + D K P+
Sbjct: 38 KDPSAPKRPPSAFFLFCSEYHPQIKGEHPDI-SIRDAAKKLGEMWNNTAADGKQPY 92
>gi|326432726|gb|EGD78296.1| hypothetical protein PTSG_09362 [Salpingoeca sp. ATCC 50818]
Length = 1279
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 29 AKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKA 88
AK A P KPKR SAFF F++E R P SV + G+KWK +S++ KA
Sbjct: 382 AKEVDASAPPKPKRYTSAFFYFLKEQRNN----DPAPLSVTESSRVFGQKWKELSDEAKA 437
Query: 89 PFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEG 139
P++E + + Y ++M+ Y + L +A E + S S++ + G
Sbjct: 438 PYLELERRDRQRYARDMEKYKELLV--AHAREHGATTPSMSKLISNKPKRG 486
>gi|261194046|ref|XP_002623428.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|239588442|gb|EEQ71085.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|327354542|gb|EGE83399.1| nonhistone chromosomal protein 6A [Ajellomyces dermatitidis ATCC
18188]
Length = 101
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ F E R +E +P S VGK GE+WK+++E ++AP+ +A
Sbjct: 19 KDPNAPKRGLSAYMFFANEQRDNVREENPGI-SFGQVGKVLGERWKALNEKQRAPYEAKA 77
Query: 95 EKRKSDYNKNMQDYNKQ 111
K Y YN Q
Sbjct: 78 AADKKRYEDEKASYNAQ 94
>gi|444523921|gb|ELV13661.1| High mobility group protein B1 [Tupaia chinensis]
Length = 226
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN K+PPSAF ++ E+R + K HP S+ V K GE S + D+ P+ ++A
Sbjct: 77 KDPNVSKKPPSAFCLYCSEYRPKIKGGHPGL-SIGDVAKKLGELQNSTAADDTQPYEKKA 135
Query: 95 EKRKSDYNKNMQDY 108
K K Y K++ Y
Sbjct: 136 SKLKEKYEKDIAAY 149
>gi|402086642|gb|EJT81540.1| hypothetical protein GGTG_01518 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 481
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
PKA D N P+RPPSA+ +F + R K+ H + + K GE W++++ EK P
Sbjct: 112 HPKA--DENAPERPPSAYVLFSNKMRDDLKDQH---LTFTEIAKLVGEHWQALAPSEKEP 166
Query: 90 FVERAEKRKSDYNKNMQDYNK 110
+ +A+ K YN ++ +Y +
Sbjct: 167 YETQAQTAKDKYNHDLAEYKR 187
>gi|56756178|gb|AAW26264.1| SJCHGC08557 protein [Schistosoma japonicum]
Length = 177
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP+ PKR SAFF F + FR + + HP+ K V+ + K G +W+ S+ EK + +R
Sbjct: 93 IKDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSDKEK--YEQR 149
Query: 94 AEKRKSDYNKNMQDYNKQLA 113
A+ K Y ++MQ Y L
Sbjct: 150 AQNDKLRYEQDMQKYKGWLV 169
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFV 91
KD N+PK P + F++ R++ ++ HP N + K EKWK M+ +++ F
Sbjct: 2 MVKDKNRPKPPMKPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCFE 61
Query: 92 ERAEKRKSDYNKNMQDY 108
E A+ +N+ M Y
Sbjct: 62 EMAKLDTERFNREMAHY 78
>gi|71012570|ref|XP_758511.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
gi|46098169|gb|EAK83402.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
Length = 125
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 14 DSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK 73
D+K KS + KRT K A KDP+ PKRP SA+ F ++ R++ K A+P VG+
Sbjct: 31 DTKTKSSTS-TQKRTTK--AKKDPDAPKRPLSAYMFFSQDQRERVKNANPE-AGFGEVGR 86
Query: 74 AAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
G KWK MSE EK P+ + A + K+ YNK+
Sbjct: 87 LLGAKWKEMSEAEKKPYNDMANRDKARAEAEKAAYNKR 124
>gi|312381012|gb|EFR26863.1| hypothetical protein AND_06768 [Anopheles darlingi]
Length = 333
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
D N PK P + + +M E R ++ HPN S + K E W + ED+K P++E AE
Sbjct: 72 DANAPKHPLTGYVRYMNEHRDGVRQKHPN-LSHMDLTKLMAEDWSKLPEDKKKPYLEAAE 130
Query: 96 KRKSDYNKNMQDY 108
K YNK + +Y
Sbjct: 131 ADKERYNKEILEY 143
>gi|448084218|ref|XP_004195549.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359376971|emb|CCE85354.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDP+ PKR SA+ F E R + +P S VGK GEKWK+M+ D+K P+ +A
Sbjct: 14 KDPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKAMTSDDKTPYESKA 72
Query: 95 EKRKSDYNKNMQDYNKQ 111
E K Y K +Y K+
Sbjct: 73 EADKKRYEKEKAEYAKK 89
>gi|302828472|ref|XP_002945803.1| hypothetical protein VOLCADRAFT_72419 [Volvox carteri f.
nagariensis]
gi|300268618|gb|EFJ52798.1| hypothetical protein VOLCADRAFT_72419 [Volvox carteri f.
nagariensis]
Length = 199
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDPN PK+ +AF F R + K +P S VGK GEKWKS+ +EK+ + E+
Sbjct: 75 VKDPNAPKKNLTAFMYFSNAQRDKVKTDNPGV-SFGEVGKLLGEKWKSLGANEKSEYEEK 133
Query: 94 AEKRKSDYNKNMQDY 108
A+K K Y K M+ Y
Sbjct: 134 AKKDKERYAKEMEAY 148
>gi|221059780|ref|XP_002260535.1| High mobility group protein [Plasmodium knowlesi strain H]
gi|193810609|emb|CAQ42507.1| High mobility group protein, putative [Plasmodium knowlesi strain
H]
Length = 104
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP+ PKR SA+ F +E R + P+ +K VATVGK GE W + E EKAP+ ++
Sbjct: 23 KDPHAPKRSLSAYMFFAKEKRAEIISRDPDLSKDVATVGKMIGEAWNKLDEREKAPYEKK 82
Query: 94 AEKRKSDYNKNMQDYNK 110
A++ K Y + +Y K
Sbjct: 83 AQEDKVRYEREKVEYAK 99
>gi|70999478|ref|XP_754458.1| nucleosome binding protein (Nhp6a) [Aspergillus fumigatus Af293]
gi|74674416|sp|Q4WY33.1|NHP6_ASPFU RecName: Full=Non-histone chromosomal protein 6
gi|66852095|gb|EAL92420.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
Af293]
gi|159127475|gb|EDP52590.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
A1163]
Length = 104
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ F E R + +E +P S VGK GE+WK++S+ E+ P+ E+A
Sbjct: 20 KDPNAPKRGLSAYMFFANENRDKVREENPGI-SFGQVGKMLGERWKALSDSERRPYEEKA 78
Query: 95 EKRKSDYNKNMQDYN 109
K Y YN
Sbjct: 79 AADKKRYEDEKASYN 93
>gi|157821289|ref|NP_001100459.1| transcription factor SOX-8 [Rattus norvegicus]
gi|149052122|gb|EDM03939.1| SRY-box containing gene 8 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 463
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
+ +G G AKP KRP +AF V+ + R++ + +P+ + A + K G
Sbjct: 83 MPVRGGGGGTLKAKPHV-------KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLG 134
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
+ W+ +SE EK PFVE AE+ + + K+ DY Q
Sbjct: 135 KLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQ 169
>gi|363755760|ref|XP_003648095.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892131|gb|AET41278.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
Length = 94
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR SA+ F E R + +P S VG+ GEKWK++S+DEK P+ +AE
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPG-ISFGQVGRVLGEKWKALSDDEKQPYEAKAE 75
Query: 96 KRKSDYNKNMQDYN 109
K Y + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|45187563|ref|NP_983786.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|74694642|sp|Q75B82.1|NHP6_ASHGO RecName: Full=Non-histone chromosomal protein 6
gi|44982301|gb|AAS51610.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|374106998|gb|AEY95906.1| FADL310Wp [Ashbya gossypii FDAG1]
Length = 94
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR SA+ F E R + +P S VG+ GEKWK++S+DEK P+ +AE
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPG-ISFGQVGRVLGEKWKALSDDEKQPYEAKAE 75
Query: 96 KRKSDYNKNMQDYN 109
K Y + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|343427271|emb|CBQ70799.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 519
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK--------AAGEKWKSMSEDE 86
KDPN PK+P SA+F+F+ R A PN G+ A KW+S+SE E
Sbjct: 435 KDPNAPKKPLSAYFLFLRAIR-----ADPNMTQAVFEGEQETTKQSVLAAAKWRSLSETE 489
Query: 87 KAPFVERAEKRKSDYNKNMQDY 108
K P+++RAE K+ Y + ++Y
Sbjct: 490 KQPYLDRAEADKARYERLRREY 511
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
PK+ PSA+ +F E ++ K P+ + +VA V K AG+++ ++ E +K F R+ + K
Sbjct: 335 PKQAPSAWQIFFTEELQKIKAQSPDERLNVAHVAKDAGQRYAALPESKKQEFHRRSLEAK 394
Query: 99 SDYNKNMQDYNKQL 112
+ + M ++ +L
Sbjct: 395 EQWEQEMAEWKSKL 408
>gi|148668679|gb|EDL00993.1| mCG49874 [Mus musculus]
Length = 140
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
PN PKRPPSAFF+F E R + K HP S+ K G W S +K P+ ++A K
Sbjct: 41 PNAPKRPPSAFFLFCSENRPEIKIDHPGL-SIGDTSKKLGVMWSEQSAKDKQPYEQKAAK 99
Query: 97 RKSDYNKNMQDY 108
K Y K++ +
Sbjct: 100 PKEKYEKDIAAF 111
>gi|443895134|dbj|GAC72480.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 99
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 14 DSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK 73
D+K KS + KRT K K KDP PKRP SA+ F ++ R++ K+A+P VG+
Sbjct: 5 DTKTKSSTS-TQKRTTKSK--KDPAAPKRPLSAYMFFSQDHRERVKQANPEA-GFGDVGR 60
Query: 74 AAGEKWKSMSEDEKAPFVERAEK 96
G KWK MSE EK P+ + A +
Sbjct: 61 LLGAKWKEMSEAEKKPYNDMATR 83
>gi|354478829|ref|XP_003501617.1| PREDICTED: transcription factor SOX-8 [Cricetulus griseus]
gi|344248291|gb|EGW04395.1| Transcription factor SOX-8 [Cricetulus griseus]
Length = 463
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
+ +G G AKP KRP +AF V+ + R++ + +P+ + A + K G
Sbjct: 83 MPVRGGGGGTLKAKPHV-------KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLG 134
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
+ W+ +SE EK PFVE AE+ + + K+ DY Q
Sbjct: 135 KLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQ 169
>gi|26329121|dbj|BAC28299.1| unnamed protein product [Mus musculus]
Length = 464
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
+ +G G AKP KRP +AF V+ + R++ + +P+ + A + K G
Sbjct: 83 MPVRGGGGGTLKAKPHV-------KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLG 134
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
+ W+ +SE EK PFVE AE+ + + K+ DY Q
Sbjct: 135 KLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQ 169
>gi|444323521|ref|XP_004182401.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS 6284]
gi|387515448|emb|CCH62882.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS 6284]
Length = 94
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ F E R + +P+ + VGK GE+WK++S +EK P+ +A
Sbjct: 16 KDPNAPKRALSAYMFFANETRDIVRSENPDV-TFGQVGKILGERWKALSAEEKVPYETKA 74
Query: 95 EKRKSDYNKNMQDYN 109
E K Y + YN
Sbjct: 75 EADKKRYESEKELYN 89
>gi|148668459|gb|EDL00778.1| mCG116117 [Mus musculus]
Length = 244
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K KDPN PKRPPSAFF+F +R + K HP S+ V K GE W + + D+K P
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHP-GLSIGDVAKKRGEMWNNTAADDKQP 143
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
K+ Y + M+ Y
Sbjct: 65 IADKARYEREMKTY 78
>gi|33563276|ref|NP_035577.1| transcription factor SOX-8 [Mus musculus]
gi|10720403|sp|Q04886.2|SOX8_MOUSE RecName: Full=Transcription factor SOX-8
gi|7025337|gb|AAF35837.1|AF191325_1 SRY-related protein SOX 8 [Mus musculus]
gi|26328277|dbj|BAC27879.1| unnamed protein product [Mus musculus]
gi|26343663|dbj|BAC35488.1| unnamed protein product [Mus musculus]
gi|55249580|gb|AAH85619.1| SRY-box containing gene 8 [Mus musculus]
gi|148690483|gb|EDL22430.1| SRY-box containing gene 8, isoform CRA_b [Mus musculus]
Length = 464
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
+ +G G AKP KRP +AF V+ + R++ + +P+ + A + K G
Sbjct: 83 MPVRGGGGGTLKAKPHV-------KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLG 134
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
+ W+ +SE EK PFVE AE+ + + K+ DY Q
Sbjct: 135 KLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQ 169
>gi|26329803|dbj|BAC28640.1| unnamed protein product [Mus musculus]
Length = 464
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 17 LKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAG 76
+ +G G AKP KRP +AF V+ + R++ + +P+ + A + K G
Sbjct: 83 MPVRGGGGGTLKAKPHV-------KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLG 134
Query: 77 EKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
+ W+ +SE EK PFVE AE+ + + K+ DY Q
Sbjct: 135 KLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQ 169
>gi|444721192|gb|ELW61941.1| High mobility group protein B1 [Tupaia chinensis]
Length = 300
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAAD 139
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP KP+ S++ F++ ++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCWEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFKDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y + M+ Y
Sbjct: 65 KVNKARYEREMKTY 78
>gi|303289076|ref|XP_003063826.1| histone chaperone [Micromonas pusilla CCMP1545]
gi|226454894|gb|EEH52199.1| histone chaperone [Micromonas pusilla CCMP1545]
Length = 657
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
DPN PKRP S++ +F E R + E P S+ +GKA G KWK M+ +EK P+
Sbjct: 553 DPNAPKRPLSSYMIFAGENRGKLVEETPG-MSIGEIGKALGAKWKEMTAEEKVPY 606
>gi|389585513|dbj|GAB68243.1| high mobility group protein [Plasmodium cynomolgi strain B]
Length = 107
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP+ PKR SA+ F +E R + P+ +K VATVGK GE W + E EKAP+ ++
Sbjct: 26 KDPHAPKRSLSAYMFFAKEKRAEIISRDPDLSKDVATVGKMIGEAWNKLDELEKAPYEKK 85
Query: 94 AEKRKSDYNKNMQDYNK 110
A++ K Y + +Y K
Sbjct: 86 AQEDKVRYEREKVEYAK 102
>gi|443684506|gb|ELT88434.1| hypothetical protein CAPTEDRAFT_172235 [Capitella teleta]
Length = 734
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPKRP SA+F+++ E R++ K +P + V + K AG++WK ++ +K + A
Sbjct: 546 DPNKPKRPQSAYFLWLNEMREEIKAENP-DAGVTDIAKLAGQRWKEVT--DKTRWEGLAV 602
Query: 96 KRKSDYNKNMQDY 108
K K Y K M++Y
Sbjct: 603 KAKESYEKAMEEY 615
>gi|156101624|ref|XP_001616505.1| high mobility group protein [Plasmodium vivax Sal-1]
gi|148805379|gb|EDL46778.1| high mobility group protein, putative [Plasmodium vivax]
Length = 107
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDP+ PKR SA+ F +E R + P+ +K VATVGK GE W + E EKAP+ ++
Sbjct: 26 KDPHAPKRSLSAYMFFAKEKRAEIISRDPDLSKDVATVGKMIGEAWNKLDEREKAPYEKK 85
Query: 94 AEKRKSDYNKNMQDYNK 110
A++ K Y + +Y K
Sbjct: 86 AQEDKLRYEREKVEYAK 102
>gi|444730059|gb|ELW70455.1| High mobility group protein B1 [Tupaia chinensis]
gi|444730060|gb|ELW70456.1| High mobility group protein B1 [Tupaia chinensis]
Length = 177
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPP AFF F E+ + K HP S+ V K GE W + + +K P+ ++A
Sbjct: 57 KDPNAPKRPPLAFFFFCSEYCPKIKGEHPGL-SIGDVAKKLGEMWNNTAAGDKQPYEKKA 115
Query: 95 EKRKSDYNKNMQDY 108
K K Y +++ Y
Sbjct: 116 AKLKEKYERDIAAY 129
>gi|50304233|ref|XP_452066.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636989|sp|Q6CVH3.1|NHP6_KLULA RecName: Full=Non-histone chromosomal protein 6
gi|49641198|emb|CAH02459.1| KLLA0B12056p [Kluyveromyces lactis]
Length = 93
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ F E R + +P + VG+ GEKWK+++EDEKAP+ +A
Sbjct: 13 KDPNAPKRALSAYMFFANENRDIVRAENPGI-TFGQVGRILGEKWKALNEDEKAPYEAKA 71
Query: 95 EKRKSDYNKNMQDY 108
E K Y + Y
Sbjct: 72 EADKKRYESEKELY 85
>gi|283462216|gb|ADB22402.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 241
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ PKR S FF+F R + K+ HPN V V KA GE+WK++S +KA + + A
Sbjct: 121 DPDAPKRNLSPFFLFCNVKRAEVKKVHPNW-GVGDVAKALGEQWKNVSAADKAKYEKEAA 179
Query: 96 KRKSDYNKNMQDY 108
K K Y K+M+ Y
Sbjct: 180 KEKIRYEKDMEAY 192
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV-ATVGKAAGEKWKSMSEDEKAPFVERA 94
+P+KPK SA+ F++ R++ K+ HP V A K E+WK M++ EK F + A
Sbjct: 32 NPDKPKGRMSAYAFFVQSCRQEHKKQHPAESVVFAEFSKKCAERWKKMTDKEKKVFHDMA 91
Query: 95 EKRKSDYNKNMQDYN 109
+K K YN M+ Y
Sbjct: 92 DKDKERYNTEMEKYT 106
>gi|328856362|gb|EGG05484.1| hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina
98AG31]
Length = 82
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
K KDPN PKRP SA+ F +++R++ K +P S +G+ G KWKS+ E+EK P+
Sbjct: 5 KREKDPNAPKRPLSAYMFFSQDWRERIKTENPEV-SFGEIGRLLGLKWKSLGEEEKKPY 62
>gi|395821450|ref|XP_003784053.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 221
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKW 79
K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W
Sbjct: 87 KKFKDPNVPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGEVAKKLGEMW 133
>gi|401885246|gb|EJT49369.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
gi|406694772|gb|EKC98094.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 108
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPNKPKR SA+ F++++R++ K +P+ +VG+ G KW+ MS EK P+ ++A
Sbjct: 18 KDPNKPKRALSAYMFFVQDWRERIKSENPDA-DFGSVGRLLGAKWQEMSASEKKPYEDKA 76
Query: 95 E 95
+
Sbjct: 77 Q 77
>gi|125538867|gb|EAY85262.1| hypothetical protein OsI_06634 [Oryza sativa Indica Group]
Length = 504
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN+PK+P S+F +F +E R+Q E P S +T+ KWK + E EK + +A
Sbjct: 410 DPNRPKKPASSFLLFSKEARRQLAEERPGVAS-STLTALVSVKWKELGEAEKQAWNGKAA 468
Query: 96 KRKSDYNKNMQDYNK 110
+ + Y ++M++Y K
Sbjct: 469 EAMAAYKRDMEEYTK 483
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+P SA+FV+ ++ R K+V +G+ GE+WK+MSE EKAPF A K++ +Y
Sbjct: 287 QPMSAYFVYTQQRRAAL---VAEKKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEY 343
Query: 102 NKNMQDYNKQ 111
M Y ++
Sbjct: 344 QVEMAAYRQR 353
>gi|313217945|emb|CBY41316.1| unnamed protein product [Oikopleura dioica]
gi|313245828|emb|CBY34818.1| unnamed protein product [Oikopleura dioica]
Length = 200
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRP +AFF+F R++ K V V K GE WK +S +EK F + A+
Sbjct: 92 DPNAPKRPATAFFLFSTANREKAKAQLEEGAKVGDVAKKLGEMWKLVSAEEKENFAKIAK 151
Query: 96 KRKSDYNKNMQDY 108
+ K+ Y+K M++Y
Sbjct: 152 ESKAKYDKAMEEY 164
Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVER 93
KD NKP+ +A+ F+ + +++ +A+P K + K G+KW++ SE+++ F ++
Sbjct: 3 KDRNKPRGRTTAYGYFVVDEKEKHAKANPGVKINFGEFSKLCGQKWQTKSEEDRIEFEKK 62
Query: 94 AEKRKSDYNKNMQDY 108
A + K Y + M Y
Sbjct: 63 ASEDKIRYEEEMASY 77
>gi|71005742|ref|XP_757537.1| hypothetical protein UM01390.1 [Ustilago maydis 521]
gi|46096660|gb|EAK81893.1| hypothetical protein UM01390.1 [Ustilago maydis 521]
Length = 517
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK--------AAGEKWKSMSEDE 86
KDPN PK+P SA+F+F+ R A PN G+ A KW+S+SE E
Sbjct: 433 KDPNAPKKPLSAYFLFLRAIR-----ADPNMTQAVFEGEQETTKQSVLAAAKWRSLSEIE 487
Query: 87 KAPFVERAEKRKSDYNKNMQDY 108
K P+++RAE K+ Y + ++Y
Sbjct: 488 KQPYLDRAEADKARYERLRREY 509
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
PK+ PSA+ +F E ++ K P+ + +VA V K AG+++ ++ E +K F +R+ + K
Sbjct: 333 PKQAPSAWQIFFTEELQKIKAQSPDERLNVAHVAKDAGQRYAALPESKKQEFHQRSLEAK 392
Query: 99 SDYNKNMQDYNKQL 112
+ + M ++ +L
Sbjct: 393 EQWEREMAEWKSKL 406
>gi|444720594|gb|ELW61376.1| High mobility group protein B3 [Tupaia chinensis]
Length = 124
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KD N PKRPPS FF+F EF + K ++ + S+ V K GE W ++S+ +K ++
Sbjct: 11 KKKKDSNAPKRPPSGFFLFFSEFHPKIKSSN-HGISIRDVAKTLGEMWNNLSDSKKQSYI 69
Query: 92 ERAEKRKSDYNKNMQDY 108
+ K K K++ D+
Sbjct: 70 TKPAKLKERDEKDVTDF 86
>gi|444520312|gb|ELV12956.1| High mobility group protein B1 [Tupaia chinensis]
Length = 150
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKRPP AFF+F E+ + K HP S K GE W + + D+K P+
Sbjct: 75 KKFKDPNVPKRPPLAFFLFCFEYCPKIKGKHP-GLSTGVAAKKLGELWNNTAADDKQPYE 133
Query: 92 ERAEKRKSDYNKNMQDY 108
++A K K Y K++ Y
Sbjct: 134 KKAAKLKEKYEKDIAAY 150
>gi|405963576|gb|EKC29138.1| FACT complex subunit SSRP1 [Crassostrea gigas]
Length = 757
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRP SA+F++ R++ K+ P+ S+ + K AGE WK M + +K + E+A
Sbjct: 556 DPNAPKRPQSAYFLWFNANREELKKDTPD-ISITDLSKKAGEVWKQMEDTDKTEWNEKAA 614
Query: 96 KRKSDYNKNMQDY 108
+ K +Y K M++Y
Sbjct: 615 EAKKEYEKAMEEY 627
>gi|1083056|pir||B61611 nonhistone chromosomal protein HMG-2 - bovine (fragments)
Length = 186
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
N PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ ++A K
Sbjct: 85 NAPKRPPSAFFLFSAEHRPKIKAEHPGL-SIGDTAKKLGEMWSQQSAKDKQPYEQKASKL 143
Query: 98 KSDYNK 103
K Y K
Sbjct: 144 KEKYEK 149
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKP+ S++ F++ R++ K+ HP+ A+V E+WK+MS EK+ F + A+
Sbjct: 4 DPNKPRGKMSSYAFFVQTSREEHKKKHPD----ASVN--FSERWKTMSAKEKSKFEDMAK 57
Query: 96 KRKSDYNKNMQDY 108
K+ Y++ M++Y
Sbjct: 58 SDKARYDREMKNY 70
>gi|347441690|emb|CCD34611.1| similar to transcription factor HMG [Botryotinia fuckeliana]
Length = 101
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR SA+ F E R +E +P S VGK GE+WK+++E ++ P+ E A
Sbjct: 20 DPNAPKRGLSAYMFFANEQRDNVREENPG-ISFGQVGKVLGERWKALNEKQRGPYEESAA 78
Query: 96 KRKSDYNKNMQDYN 109
K K Y + +YN
Sbjct: 79 KDKKRYEEEKANYN 92
>gi|185135497|ref|NP_001117071.1| Sox8 [Salmo salar]
gi|83583656|gb|ABC24688.1| Sox8 [Salmo salar]
Length = 459
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 38 NKP--KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
NKP KRP +AF V+ + R++ + +P+ + A + K G+ W+ +SE+EK PFVE AE
Sbjct: 96 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAE 154
Query: 96 KRKSDYNKNMQDYNKQ 111
+ + + K+ DY Q
Sbjct: 155 RLRVQHKKDHPDYKYQ 170
>gi|354476918|ref|XP_003500670.1| PREDICTED: high mobility group protein B4-like [Cricetulus griseus]
Length = 180
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ P++PPS+F +F + Q K +PN SV V KA G+ W S +K P+ ++A
Sbjct: 89 DPHAPRQPPSSFLLFSLDHYAQLKHDNPN-WSVVQVAKATGKMWSMTSNVDKQPYEQKAA 147
Query: 96 KRKSDYNKNMQDYNKQL 112
++ Y +++++Y KQ
Sbjct: 148 LLRAKYFEDVENYRKQF 164
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S++ FM +R +FKE PN + EKW+S+S+ EKA + A+
Sbjct: 8 RPKVNVSSYIHFMLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 98 KSDYNKNMQDY 108
K+ Y + M +Y
Sbjct: 68 KARYQEEMMNY 78
>gi|367018942|ref|XP_003658756.1| hypothetical protein MYCTH_2294934 [Myceliophthora thermophila ATCC
42464]
gi|347006023|gb|AEO53511.1| hypothetical protein MYCTH_2294934 [Myceliophthora thermophila ATCC
42464]
Length = 521
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 21 GARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWK 80
G KR + D N P+RPPSA+ +F + R++ K N S A + K GE W+
Sbjct: 100 GTVVTKRKYRRHPKPDENAPERPPSAYVLFSNKMREELKG---RNLSFAEIAKLVGENWQ 156
Query: 81 SMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
++S EK PF RA+ K Y ++ +Y K
Sbjct: 157 NLSAAEKEPFEARAQAIKDKYLADLAEYKK 186
>gi|428163656|gb|EKX32716.1| FACT complex subunit ssrp1 [Guillardia theta CCMP2712]
Length = 746
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRP SA+ +F + R+ + +P+ K GK + E WK++S DEK PF E A
Sbjct: 547 KDPNAPKRPKSAWLLFCDAKREDIVKENPDIKFTEVNGKIS-EIWKNLSSDEKKPFEEEA 605
Query: 95 EKRKSDYNKNMQDYNKQ 111
K S Y ++ Y+K+
Sbjct: 606 AKLASKYKEDKAKYDKE 622
>gi|109511234|ref|XP_228669.3| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|109514134|ref|XP_001066357.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|392356064|ref|XP_003752207.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+PPS+F +F ++ + KE HPN +VA V KAAG W SE +K P+ ERA ++ Y
Sbjct: 95 KPPSSFLLFSQDHFDEIKEQHPN-WTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKY 153
Query: 102 NKNMQDYNKQLADG 115
+ + Y Q G
Sbjct: 154 LEEREAYYHQCQRG 167
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S + FM +FR Q +E PN T + EKWK++S+ EK + A++
Sbjct: 8 RPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRD 67
Query: 98 KSDYNKNMQDYN 109
K Y + M++Y+
Sbjct: 68 KDRYQREMRNYS 79
>gi|444511434|gb|ELV09880.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
KDPN PKRPPSAFF+F E+ + K +P S++ + K GE W + + D K P+
Sbjct: 47 KDPNAPKRPPSAFFLFCSEYCPEIKGDYPGL-SISDIAKKLGEMWNNTAADGKQPY 101
>gi|428671805|gb|EKX72720.1| high mobility group protein, putative [Babesia equi]
Length = 94
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
KDPN PKR S++ F +E R + +P K VA+VG+ G W ++ E EKAPF +
Sbjct: 18 KDPNAPKRALSSYMFFAKEKRAEIIAENPELAKDVASVGRLIGAAWNALDEKEKAPFEKL 77
Query: 94 AEKRKSDYNKNMQDYNK 110
AE+ K+ Y K +Y K
Sbjct: 78 AEEDKARYEKEKAEYYK 94
>gi|388852006|emb|CCF54362.1| uncharacterized protein [Ustilago hordei]
Length = 515
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK--------AAGEKWKSMSEDE 86
KDPN PK+P SA+F+F+ R A PN G+ A KW+S+SE E
Sbjct: 431 KDPNAPKKPLSAYFLFLRAIR-----ADPNMTQAVFEGEQETTKQSVLAAAKWRSLSEPE 485
Query: 87 KAPFVERAEKRKSDYNKNMQDY 108
K P+++RAE K+ Y + ++Y
Sbjct: 486 KQPYLDRAEADKARYERLRREY 507
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 40 PKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
PK+ PSA+ +F E ++ K P+ + +VA V K AG+++ ++ E +K F R+ + K
Sbjct: 331 PKQAPSAWQIFFTEELQKIKAQSPDERLNVAHVAKDAGQRYAALPESKKQEFHRRSLEAK 390
Query: 99 SDYNKNMQDYNKQL 112
+ + M ++ +L
Sbjct: 391 EQWEREMAEWKSKL 404
>gi|293351259|ref|XP_002727736.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+PPS+F +F ++ + KE HPN +VA V KAAG W SE +K P+ ERA ++ Y
Sbjct: 95 KPPSSFLLFSQDHFDEIKEQHPN-WTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKY 153
Query: 102 NKNMQDYNKQLADG 115
+ + Y Q G
Sbjct: 154 LEEREAYYHQCQRG 167
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S + FM +FR Q +E PN T + EKWK++S+ EK + A++
Sbjct: 8 RPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRD 67
Query: 98 KSDYNKNMQDYN 109
K Y + M++Y
Sbjct: 68 KDRYQREMRNYT 79
>gi|296317265|ref|NP_001171733.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 215
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ PKR S FF+F R + K+ HPN V V KA GE+WK++S +KA + + A
Sbjct: 95 DPDAPKRNLSPFFLFCNVKRAEVKKVHPNW-GVGDVAKALGEQWKNVSAADKAKYEKEAA 153
Query: 96 KRKSDYNKNMQDY 108
K K Y K+M+ Y
Sbjct: 154 KEKIRYEKDMEAY 166
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV-ATVGKAAGEKWKSMSEDEKAPFVERA 94
+P+KPK SA+ F++ R++ K+ HP V A K E+WK M++ EK F + A
Sbjct: 6 NPDKPKGRMSAYAFFVQSCRQEHKKQHPAESVVFAEFSKKCAERWKKMTDKEKKVFHDMA 65
Query: 95 EKRKSDYNKNMQDYN 109
+K K YN M+ Y
Sbjct: 66 DKDKERYNTEMEKYT 80
>gi|301097589|ref|XP_002897889.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106637|gb|EEY64689.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 210
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+F F + R++ ++ +PN K + + EKW+++ + ++A + +
Sbjct: 112 KDPNAPKRALSAYFFFCNDIRQEVRDENPN-KKITEIATLLAEKWRALPDKKRAKYQKMN 170
Query: 95 EKRKSDYNKNMQDYNKQ 111
E+ K Y + M YN Q
Sbjct: 171 EEAKVKYQQQMDVYNAQ 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
G T KP+ KD N PKR SAF F + R K+ P+ + + + G +WK +S+
Sbjct: 14 GDHTRKPRKKKDKNAPKRALSAFMFFSNDIRDTVKKEMPDLQFL-EISSEIGRRWKQISD 72
Query: 85 DEKAPFVERAEKRKSDYNKNMQDY 108
+++ P+ E A K Y + +DY
Sbjct: 73 EDRRPYDELAAADKRRYQEEKEDY 96
>gi|255073265|ref|XP_002500307.1| set domain protein [Micromonas sp. RCC299]
gi|226515569|gb|ACO61565.1| set domain protein [Micromonas sp. RCC299]
Length = 1496
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKRKS 99
KRP +AFF+F +E R E P ++ ++ VGK GE+W+ +S++EK P+ +AE+ +
Sbjct: 674 KRPMTAFFIFSQEQRALLIEQRPELRTNISAVGKLMGERWRKLSDEEKFPYAIKAEEARH 733
Query: 100 DY 101
+Y
Sbjct: 734 EY 735
>gi|71024155|ref|XP_762307.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
gi|46101812|gb|EAK87045.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
Length = 534
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
K K +DP+ PKRPPSA+ +F E R++ ++ HP +GK + E WK++++D++
Sbjct: 287 KEKRLRDPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKVS-EAWKALTDDQRRV 345
Query: 90 FVERAEKRKSDYNKNMQDY 108
+ ++ + + +N+ +D+
Sbjct: 346 YQDKTTENMATWNQQKKDH 364
>gi|40643040|emb|CAD91447.1| putative HMG-like protein [Crassostrea gigas]
Length = 135
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 21 GARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWK 80
G GKR K AKDPN PKR SAFF F + R + AHP SVA V K G++W+
Sbjct: 31 GGATGKRK---KRAKDPNAPKRALSAFFFFCGDERPDVRAAHPEW-SVAEVAKELGKRWE 86
Query: 81 SMSEDEKAPFVERAEKRKSDYNKNMQDY 108
++ K F RAE K+ Y K M+ Y
Sbjct: 87 KVTNRSK--FEARAEADKARYAKEMEAY 112
>gi|397788063|gb|AFO66680.1| SoxB [Sycon ciliatum]
Length = 366
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
KRP +AF V+ E RKQF + +P +N ++T GEKWK ++E+E+AP+V++A +
Sbjct: 8 KRPMNAFMVWSREERKQFAQENPKMHNSEIST---KLGEKWKRLTEEERAPYVDKARSIR 64
Query: 99 SDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGEEEDD 146
+++ K DY + + S S+ + DDE G D
Sbjct: 65 TEHMKKFPDYKYR----PKRKPKTISATSRVPTTNHDDESGPDSPPDS 108
>gi|196005089|ref|XP_002112411.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
gi|190584452|gb|EDV24521.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
Length = 253
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFK-EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP+KPKRP +A+F F+ EFRK K + K + ++ +GEKW++M+ EKA +
Sbjct: 135 DPDKPKRPQTAYFYFLAEFRKAMKAKGVIEGKKLTSL---SGEKWRAMTPAEKAKYEAMV 191
Query: 95 EKRKSDYNKNMQDYNKQ--LADG 115
K K Y + M Y K+ + DG
Sbjct: 192 TKDKERYQREMDAYRKKKGIKDG 214
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
K+P SA+ F R++ K++ + K G +W++M+ +K P+ E A + K
Sbjct: 63 KKPKSAYIFFTTSLRQRLKKSGREMPKAHEIAKMCGSEWRAMTASQKKPYDELAARDKQR 122
Query: 101 YNKNMQDYNK----------QLADGVNAAEENESDKSKSEVNDEDDEEGSGE 142
Y + + + K Q A AE ++ K+K + + SGE
Sbjct: 123 YMEEISKFRKKADPDKPKRPQTAYFYFLAEFRKAMKAKGVIEGKKLTSLSGE 174
>gi|384496847|gb|EIE87338.1| hypothetical protein RO3G_12049 [Rhizopus delemar RA 99-880]
Length = 157
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR S++ ++ + R + HP+ K++ + K GE W +SE EK P+V++A+
Sbjct: 42 DPNAPKRNLSSYMLYTQAVRPKVVAEHPDMKAI-EIAKFVGEMWNKLSEKEKMPYVKQAQ 100
Query: 96 KRKSDYNKNMQDYNKQLADG 115
K K + K Y L
Sbjct: 101 KEKVRFEKENASYKDSLVSA 120
>gi|74484299|gb|ABA10785.1| Sox8 [Scyliorhinus canicula]
Length = 224
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 38 NKP--KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
NKP KRP +AF V+ + R++ + +P+ + A + K G+ W+ +SE+EK PFVE AE
Sbjct: 24 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAE 82
Query: 96 KRKSDYNKNMQDYNKQ 111
+ + + K+ DY Q
Sbjct: 83 RLRVQHKKDHPDYKYQ 98
>gi|48375124|gb|AAT42231.1| transcription factor Sox 8 [Tetraodon nigroviridis]
Length = 462
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 38 NKP--KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
NKP KRP +AF V+ + R++ + +P+ + A + KA G+ W+ +SE EK PFV+ AE
Sbjct: 96 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKALGKLWRLLSESEKRPFVDEAE 154
Query: 96 KRKSDYNKNMQDYNKQ 111
+ + + K+ DY Q
Sbjct: 155 RLRIQHKKDHPDYKYQ 170
>gi|405975742|gb|EKC40290.1| High mobility group protein DSP1 [Crassostrea gigas]
Length = 201
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 21 GARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWK 80
G GKR K AKDPN PKR SAFF F + R + AHP SVA V K G++W+
Sbjct: 82 GGATGKRK---KRAKDPNAPKRALSAFFFFCGDERPDVRAAHPEW-SVAEVAKELGKRWE 137
Query: 81 SMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
++ K F RAE K+ Y K M+ Y
Sbjct: 138 KVTNRSK--FEARAEADKARYAKEMEAYR 164
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KP+ S++ F++ R++ K+ P+ N A K +KWK MS EK F E AE+
Sbjct: 7 KPRGRMSSYAFFVQTCREEHKKKCPDENVVFAEFTKKCAQKWKEMSAKEKRRFEEMAERD 66
Query: 98 KSDYNKNMQDYN 109
KS Y K+M +Y+
Sbjct: 67 KSRYEKDMANYD 78
>gi|346975183|gb|EGY18635.1| hypothetical protein VDAG_09161 [Verticillium dahliae VdLs.17]
Length = 518
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
PKA D N P RPPSA+ +F + R K N + + K GEKW+S+S EK P
Sbjct: 109 PKA--DDNAPGRPPSAYVLFSNKMRDDLKG---RNLTFTKIAKLVGEKWQSLSHIEKEPV 163
Query: 91 VERAEKRKSDYNKNMQDYNK 110
+A K YN+++ +Y K
Sbjct: 164 ETQALNAKEKYNQDLAEYKK 183
>gi|392356036|ref|XP_003752196.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+PPS+F +F ++ ++ KE HPN VA V KAAG W SE +K P+ ERA ++ Y
Sbjct: 95 KPPSSFLLFSQDHFEEIKEQHPN-WPVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKY 153
Query: 102 NKNMQDYNKQLADG 115
+ + Y +Q G
Sbjct: 154 LEEREAYYQQCQRG 167
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S + FM +FR Q +E PN T + EKWK++S+ EK + A++
Sbjct: 8 RPKVNVSPYVHFMMDFRNQMREQQPNIYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRD 67
Query: 98 KSDYNKNMQDYN 109
K Y + M++Y+
Sbjct: 68 KDRYQREMRNYS 79
>gi|393236123|gb|EJD43674.1| hypothetical protein AURDEDRAFT_114700 [Auricularia delicata
TFB-10046 SS5]
Length = 125
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
KPK K PKR SA+ F++++R++ KE +P+ + +GK G KWK MS+++K P
Sbjct: 18 KPKKEKKEAGPKRALSAYMFFVKDWRERIKEENPDA-AFGEIGKLMGAKWKEMSDEDKQP 76
Query: 90 FVERAEKRKSDYNKNMQD 107
+VE+AE+ K K+ D
Sbjct: 77 YVEQAEEDKVRAEKDRAD 94
>gi|403332939|gb|EJY65527.1| hypothetical protein OXYTRI_14318 [Oxytricha trifallax]
Length = 772
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
NKPK+P SA+ F +EFR+ + +P +V V KA +W ++S+++K PF + A +
Sbjct: 324 NKPKKPLSAYIYFSQEFREIIRARYPT-MTVIQVMKAVSYRWGNLSKEQKYPFEQMAVED 382
Query: 98 KSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 132
K Y+K + D K G +A + ++ VN
Sbjct: 383 KQRYDKEINDCKKGTFQGRSATPQIRIQQNSEAVN 417
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
KPK+ SA+ +F++E R + HP ++ V + G++W++++E++K F E+A++ K
Sbjct: 147 KPKKCLSAYMIFVKETRPLIVDEHPEMGALQ-VMQEVGKQWQALTEEQKNYFKEKADRDK 205
Query: 99 SDY 101
Y
Sbjct: 206 LRY 208
>gi|156843619|ref|XP_001644876.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156115528|gb|EDO17018.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR SA+ F E R K +P+ S VG+ GEKWK+M++++K PF +AE
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENPD-VSFGQVGRILGEKWKAMTDEDKQPFDAKAE 75
Query: 96 KRKSDYNKNMQDYN 109
K Y + YN
Sbjct: 76 ADKKRYESEKELYN 89
>gi|332267288|ref|XP_003282615.1| PREDICTED: high mobility group protein B3-like, partial [Nomascus
leucogenys]
Length = 103
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 45 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
S FF+F EFR + K +P S+ V K GE W ++++ EK P++ +A K K Y K+
Sbjct: 1 SGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKD 59
Query: 105 MQDY 108
+ DY
Sbjct: 60 VADY 63
>gi|355757722|gb|EHH61247.1| hypothetical protein EGM_19210, partial [Macaca fascicularis]
Length = 185
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 6 SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
+K D V D ++K G A+ GK+ D N KRPPS FF+F EF + K +P
Sbjct: 64 AKTDKVHYDQEMKDYGPAKGGKKK------NDSNTFKRPPSGFFLFCSEFHPKIKSTNP- 116
Query: 65 NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
G + G+ K + E EK P++ +A K K +Y K++ +Y
Sbjct: 117 -------GISIGDVTKKLGEIEKQPYIIKAAKLKEEYEKDVAEY 153
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K K SA+ F++ R++ K+ +P + A K +WK+MS EK+ F E A
Sbjct: 5 DPKKLKGKVSAYAFFVQMCREEHKKKYPEVPVNFAEFSKKCSRRWKTMSRKEKSKFDELA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K Y++ M+DY
Sbjct: 65 KTDKVHYDQEMKDY 78
>gi|159478601|ref|XP_001697391.1| high mobility group protein [Chlamydomonas reinhardtii]
gi|158274549|gb|EDP00331.1| high mobility group protein [Chlamydomonas reinhardtii]
Length = 99
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PK+P A+ F +E R+Q K +P SV +G+ GE WK +D+K F + A+
Sbjct: 18 DPNAPKKPMGAYMWFCKEMREQVKADNPEF-SVTDIGRRLGELWKECEDDDKKKFQDLAD 76
Query: 96 KRKSDYNKNMQDYNKQ 111
K K YNK Y K+
Sbjct: 77 KDKERYNKENAAYQKK 92
>gi|109510329|ref|XP_001076590.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|293351208|ref|XP_002727725.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+PPS+F +F ++ + KE HPN +V V KAAG W SE +K P+ ERA ++ Y
Sbjct: 95 KPPSSFLLFSQDHFDEIKEQHPN-WTVGQVAKAAGRMWARCSEADKIPYEERAAVLRAKY 153
Query: 102 NKNMQDYNKQLADG 115
+ + Y++Q G
Sbjct: 154 LEEREAYHQQCQRG 167
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERAEKR 97
+PK S + FM +FR Q +E PN T + EKWK++S+ EK + A++
Sbjct: 8 RPKVNVSPYVHFMMDFRNQMREQQPNIYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRD 67
Query: 98 KSDYNKNMQDYN 109
K Y + M++Y+
Sbjct: 68 KDRYQREMRNYS 79
>gi|313224350|emb|CBY20139.1| unnamed protein product [Oikopleura dioica]
Length = 91
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
+A KDPN PKRP +AFF+F + R K+ P V+ V K G WK + K +
Sbjct: 3 RAKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVAKKLGVMWKEVDAKTKEKYQ 62
Query: 92 ERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
+AE+ K+ Y + M+ Y A N +E
Sbjct: 63 SQAEENKAKYAEEMEAYRNSQAVTANDSE 91
>gi|348680492|gb|EGZ20308.1| hypothetical protein PHYSODRAFT_285400 [Phytophthora sojae]
Length = 211
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+F F + R++ ++ +PN K + + E+W+++ + ++A + +
Sbjct: 108 KDPNAPKRALSAYFFFCNDIRQEVRDENPNKK-ITEIATLLAERWRALPDKKRAKYQKMH 166
Query: 95 EKRKSDYNKNMQDYNKQLADGV 116
E+ K Y + M YN Q + V
Sbjct: 167 EEAKVKYQQQMDAYNAQGSAAV 188
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
G T KP+ KD N PKR SAF F + R+ K+ P + + G +WK +S+
Sbjct: 10 GDHTRKPRKKKDKNAPKRALSAFMFFSNDIRETVKKEMP-ELAFLQISSEIGRRWKKISD 68
Query: 85 DEKAPFVERAEKRKSDYNKNMQDY 108
+E+ P+ E A K Y + +DY
Sbjct: 69 EERRPYDELAAADKRRYQEEKEDY 92
>gi|167536391|ref|XP_001749867.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771582|gb|EDQ85246.1| predicted protein [Monosiga brevicollis MX1]
Length = 197
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
KR + +A KDPNKPK SA+ F ++ R QF + +P+ K + V K G W+ MS+
Sbjct: 24 KRPRQKRAKKDPNKPKNAQSAYMFFSQKVRPQFSKDNPDKK-MTDVSKLIGAAWREMSDA 82
Query: 86 EKAPFVERAEKRKSDYNKNMQDY 108
K P+ E A + K Y M Y
Sbjct: 83 AKKPYEEMARRDKQRYQHQMATY 105
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDP+ PK+P +A+F++ + R + + N +VA + K G +WK +S+ K P+ +RA
Sbjct: 121 KDPDAPKKPLTAYFLYAADRRAALRAQN-RNATVADIAKIIGAEWKDLSDAVKKPYQDRA 179
Query: 95 EKRKSDYNKNMQDY 108
++ KS Y K ++ Y
Sbjct: 180 DRLKSQYQKEVELY 193
>gi|442755991|gb|JAA70155.1| Putative dorsal switch protein 1 [Ixodes ricinus]
Length = 207
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
G+++ K K KDPN PKRP SAFF F + R ++ P+ SV V K G +W + +
Sbjct: 81 GEKSKKRKRTKDPNAPKRPLSAFFWFCNDERPNVRQESPDA-SVGEVAKELGRRWNDVGD 139
Query: 85 DEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEE 121
D K+ + A K K+ Y K ++ Y + G + +E
Sbjct: 140 DTKSKYEGLAAKDKARYEKELKAYKNKKTKGASPPKE 176
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
+KP+ SA+ F++ R++ K+ HP N A K E+WK+MS+ EK F + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPTENVVFAEFSKKCAERWKTMSDGEKKRFHQMADK 64
Query: 97 RKSDYNKNMQDY 108
K ++ M DY
Sbjct: 65 DKKRFDSEMADY 76
>gi|237832349|ref|XP_002365472.1| HMG box domain-containing protein [Toxoplasma gondii ME49]
gi|211963136|gb|EEA98331.1| HMG box domain-containing protein [Toxoplasma gondii ME49]
Length = 98
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERA 94
DPN P+R SAF F +E R + A+P KS T VGK GE W ++ +E+ PF E+A
Sbjct: 21 DPNAPRRALSAFMFFAKEKRTEIVAANPELKSQMTKVGKMVGEAWGKLTPEERKPFEEKA 80
Query: 95 EKRKSDYNKNMQDYNK 110
+ K+ Y Q++ +
Sbjct: 81 AQDKARYLSEKQEFEQ 96
>gi|47497872|dbj|BAD20056.1| putative embryogenic callus protein 98b [Oryza sativa Japonica
Group]
gi|50252043|dbj|BAD27975.1| putative embryogenic callus protein 98b [Oryza sativa Japonica
Group]
gi|125581537|gb|EAZ22468.1| hypothetical protein OsJ_06136 [Oryza sativa Japonica Group]
Length = 504
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN+PK+P S+F +F +E R+Q E P S +T+ KWK + E EK + +A
Sbjct: 410 DPNRPKKPASSFLLFSKEARRQLAEERPGVAS-STLTALVSVKWKELGEAEKQAWNGKAA 468
Query: 96 KRKSDYNKNMQDYNK 110
+ + Y ++M++Y K
Sbjct: 469 EAMAAYKRDMEEYTK 483
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+P SA+FV+ ++ R K+V +G+ GE+WK+MSE EKAPF A K++ +Y
Sbjct: 287 QPMSAYFVYTQQRRAAL---VAEKKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEY 343
Query: 102 NKNMQDYNKQ 111
M Y ++
Sbjct: 344 QVEMAAYRQR 353
>gi|403417262|emb|CCM03962.1| predicted protein [Fibroporia radiculosa]
Length = 253
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 1 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
M G A VG K + K G+R P+ KDPN PKRP S++ +F + R++ KE
Sbjct: 59 MPPGGIPAQVVGGKRKSRIKVDADGRRIRTPRKLKDPNAPKRPASSYLIFQNDVRQKLKE 118
Query: 61 AHP---NNKSVATVGKAAGE 77
HP NN+ + + K GE
Sbjct: 119 EHPGIANNELLTMIAKLWGE 138
>gi|344245465|gb|EGW01569.1| hypothetical protein I79_003161 [Cricetulus griseus]
Length = 163
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKRPPSAF +F E+R + K HP S+ V K GE W + + D+K P ++A
Sbjct: 15 KDPNAPKRPPSAF-LFCSEYRPKIKGEHPG-LSIGDVAKKLGELWHTAAADDKQPCEKKA 72
Query: 95 EKRKSDYNKNMQDY 108
K K + K++ Y
Sbjct: 73 AKLKEKHEKDIAAY 86
>gi|213404372|ref|XP_002172958.1| HMG box-containing protein [Schizosaccharomyces japonicus yFS275]
gi|212001005|gb|EEB06665.1| HMG box-containing protein [Schizosaccharomyces japonicus yFS275]
Length = 310
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 14/121 (11%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAH-PNNKSVATVGKAAGEKWKSM 82
AGKR A+ DPN+PKRPPSA+ ++ + R +E+ V V KA EKW S+
Sbjct: 108 AGKRKAR-----DPNQPKRPPSAYILYQKVQRPIVRESLGEKGNDVKEVNKACHEKWDSL 162
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEGSGE 142
SE+EK PF E A K +S+Y KNM + A +E E ++ V E+ EE +
Sbjct: 163 SEEEKKPFEEEAAKLRSEYEKNMVTF--------EANKEKEQEQGAETVPTENKEEHTAA 214
Query: 143 E 143
E
Sbjct: 215 E 215
>gi|449505047|ref|XP_004162361.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group B protein
13-like [Cucumis sativus]
Length = 500
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPK+P S++ +F +E RK E P S +TV KWK +SE+E+ + ++A
Sbjct: 412 DPNKPKKPASSYILFSKEARKSVMEEKPGV-SNSTVNALISVKWKELSEEERKIWNDKAA 470
Query: 96 KRKSDYNKNMQDYNKQLAD 114
+ Y K +++YNK +A+
Sbjct: 471 EAMEGYKKEVEEYNKSVAE 489
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+P SAFF+F E R NK+V + K AGE+WK+M+E++K P+ E A+K K Y
Sbjct: 290 QPMSAFFLFSNERRASL---VAENKNVVELAKIAGEEWKNMTEEQKGPYEEMAKKNKEKY 346
Query: 102 NKNMQDY 108
+ M+ Y
Sbjct: 347 MQEMEIY 353
>gi|403295709|ref|XP_003938773.1| PREDICTED: high mobility group protein B2 [Saimiri boliviensis
boliviensis]
Length = 158
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 13 AKSDKARYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 69
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 70 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 111
>gi|255725950|ref|XP_002547901.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133825|gb|EER33380.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 358
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
A+DP+ PKRP +A+ +F E +++ K PN + + ++ E W+++SE+++ P+ +
Sbjct: 144 ARDPDLPKRPTNAYLIFCELEKERIKSGDPN---ASDISRSMTEAWRNLSEEDRRPYFKL 200
Query: 94 AEKRKSDYNKNMQDYNKQ 111
E+ + Y + M +Y+++
Sbjct: 201 YEEDRIRYQREMTEYHQR 218
>gi|270268861|gb|ACZ65966.1| Sox8a [Misgurnus anguillicaudatus]
Length = 429
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 12 GTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATV 71
G D L AR G A K KRP +AF V+ + R++ + +P+ + A +
Sbjct: 66 GYDWSLVPMPARGGS------ALKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AEL 118
Query: 72 GKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
K G+ W+ ++E+EK PFVE AE+ + + K+ DY Q
Sbjct: 119 SKTLGKLWRLLTENEKRPFVEEAERLRVQHKKDHPDYKYQ 158
>gi|241122588|ref|XP_002403591.1| DNA-binding protein, putative [Ixodes scapularis]
gi|215493481|gb|EEC03122.1| DNA-binding protein, putative [Ixodes scapularis]
Length = 207
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 25 GKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSE 84
G+++ K K KDPN PKRP SAFF F + R ++ P+ SV V K G +W + +
Sbjct: 81 GEKSKKRKRTKDPNAPKRPLSAFFWFCNDERPNVRQESPDA-SVGEVAKELGRRWNDVGD 139
Query: 85 DEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEE 121
D K+ + A K K+ Y K ++ Y + G + +E
Sbjct: 140 DTKSKYEGLAAKDKARYEKELKAYKNKKTKGASPPKE 176
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEK 96
+KP+ SA+ F++ R++ K+ HP+ N A K E+WK+MSE EK F + A+K
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPSENVVFAEFSKKCAERWKTMSEGEKKRFHQMADK 64
Query: 97 RKSDYNKNMQDY 108
K ++ M DY
Sbjct: 65 DKKRFDSEMADY 76
>gi|221481732|gb|EEE20108.1| HMG box domain-containing protein, putative [Toxoplasma gondii GT1]
Length = 177
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERA 94
DPN P+R SAF F +E R + A+P KS T VGK GE W ++ +E+ PF E+A
Sbjct: 100 DPNAPRRALSAFMFFAKEKRTEIVAANPELKSQMTKVGKMVGEAWGKLTPEERKPFEEKA 159
Query: 95 EKRKSDYNKNMQDYNK 110
+ K+ Y Q++ +
Sbjct: 160 AQDKARYLSEKQEFEQ 175
>gi|449464074|ref|XP_004149754.1| PREDICTED: high mobility group B protein 13-like [Cucumis sativus]
Length = 500
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPNKPK+P S++ +F +E RK E P S +TV KWK +SE+E+ + ++A
Sbjct: 412 DPNKPKKPASSYILFSKEARKSVMEEKPGV-SNSTVNALISVKWKELSEEERKIWNDKAA 470
Query: 96 KRKSDYNKNMQDYNKQLAD 114
+ Y K +++YNK +A+
Sbjct: 471 EAMEGYKKEVEEYNKSVAE 489
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+P SAFF+F E R NK+V + K AGE+WK+M+E++K P+ E A+K K Y
Sbjct: 290 QPMSAFFLFSNERRASL---VAENKNVVELAKIAGEEWKNMTEEQKGPYEEMAKKNKEKY 346
Query: 102 NKNMQDY 108
+ M+ Y
Sbjct: 347 MQEMEIY 353
>gi|444708065|gb|ELW49184.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K D + KLK+ + G+ K K+P+ PKRPP AF +F E+R++ K H
Sbjct: 13 AKVDKAQYERKLKTYISPKGET----KKFKNPSAPKRPPWAFSLFSSEYRQKIKGVHLGL 68
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105
S+ V K GE W + D+K P+ ++A + K Y K++
Sbjct: 69 -SIGDVAKKLGEIWNNTVADDKQPYEKKAARLKEKYEKDI 107
>gi|242064692|ref|XP_002453635.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
gi|241933466|gb|EES06611.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
Length = 488
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDY 101
+P SA+FV+ +E R K+V +GK GE+WK+M+E +KAP+ + A K+K +Y
Sbjct: 290 QPMSAYFVYSQERRAAL---VAEKKNVPEIGKITGEEWKNMTEAQKAPYEKVARKQKEEY 346
Query: 102 NKNMQDY 108
K M+ Y
Sbjct: 347 QKQMEVY 353
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPN+PKRP S+F +F +E RKQ E P NN S+ + KWK +S +E+ + +
Sbjct: 409 DPNRPKRPASSFLLFSKEARKQLLEERPGINNSSLNALISV---KWKELSGEERQAWNAK 465
Query: 94 AEKRKSDYNKNMQDYNK 110
A + Y K M++Y K
Sbjct: 466 AAPAMAAYKKEMEEYTK 482
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
K+P A+ +++++ + KE +P V G KWK++S +EK P+ ER + K
Sbjct: 166 KKPCPAYVLWLKDQWTEVKEENPEA-DFKEVSSTLGTKWKALSAEEKQPYEERYRQEKEA 224
Query: 101 YNKNMQDYNKQLADGVNAAEENESDKSKSEVNDE 134
Y + + K+ A+ + EE + + E+ D+
Sbjct: 225 YLQVV-GQEKREAEAMKLLEEQQMQWTAKELLDQ 257
>gi|384499401|gb|EIE89892.1| hypothetical protein RO3G_14603 [Rhizopus delemar RA 99-880]
Length = 352
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K K P PK P SA+ ++ E R + ++ P++ +V + K EKW +M+++E+AP+
Sbjct: 193 KKIKSPGIPKHPLSAYMWYLTEVRPKTMKSFPSS-NVGQISKYCAEKWHTMTDEERAPWK 251
Query: 92 ERAEKRKSDYNKNMQDYNKQ 111
+A+ K Y + MQ Y Q
Sbjct: 252 TKAQVDKERYAREMQLYAIQ 271
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
A P + RPP+A+ +F ++ R+ K+ P +V + K E+W+ MS++EK +V
Sbjct: 88 ANAPIRVTRPPNAYLLFNKKMRRVLKDQDPT-MNVGEISKQIAERWRKMSKEEKEMYVNE 146
Query: 94 AEKRKSD 100
A + K +
Sbjct: 147 ANRLKQE 153
>gi|344235655|gb|EGV91758.1| High mobility group protein B2 [Cricetulus griseus]
Length = 159
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 13 AKSDKARYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 69
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 70 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 111
>gi|221502212|gb|EEE27950.1| HMG box domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 177
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPFVERA 94
DPN P+R SAF F +E R + A+P KS T VGK GE W ++ +E+ PF E+A
Sbjct: 100 DPNAPRRALSAFMFFAKEKRTEIVAANPELKSQMTKVGKMVGEAWGKLTPEERKPFEEKA 159
Query: 95 EKRKSDYNKNMQDYNK 110
+ K+ Y Q++ +
Sbjct: 160 AQDKARYLSEKQEFEQ 175
>gi|440896783|gb|ELR48616.1| High mobility group protein B1, partial [Bos grunniens mutus]
Length = 165
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDP+ PKR PSAFF+F E+ + K HP S+ V K GE W + + D+K P+
Sbjct: 77 KKFKDPSTPKRDPSAFFLFCSEYCPKVKHDHPGL-SIGDVAKKLGETWNNTAADDKQPYE 135
Query: 92 ERAEKRKSDYNKNM 105
++A K K Y K++
Sbjct: 136 KKAAKLKEKYEKDI 149
>gi|341879743|gb|EGT35678.1| CBN-HMG-1.2 protein [Caenorhabditis brenneri]
Length = 235
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
+A KDP+ PKR SAFF + ++ R + + AHP+ K V V + G+ WK +S++ K +
Sbjct: 127 RAKKDPHAPKRALSAFFFYSQDKRPEIQSAHPDWK-VGQVAQELGKMWKQVSQELKDSYE 185
Query: 92 ERAEKRKSDYNKNMQDYNKQLA--DGVNAAEENESDKSKSEVNDEDDE 137
+A+ K Y M++Y +++ G++ EE+ V D +++
Sbjct: 186 AKAQADKDRYADEMRNYKSEMSKMTGMDHYEEDHLGHHVVHVEDLNNQ 233
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFM--EEFRKQFKEAHP 63
S A+ L+ + A +T K P + K P FFV M EE +K++ P
Sbjct: 15 SPPQALYQSHALQPNPSTAMYQTTARDMGKPPVRGKTSPYGFFVKMCYEEHKKKY----P 70
Query: 64 N-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
N N V + K EKWK+M +DEK F E A+K Y + Y
Sbjct: 71 NENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVAAY 116
>gi|448079731|ref|XP_004194450.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359375872|emb|CCE86454.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDP+ PKR SA+ F E R + +P S VGK GEKWK+MS ++K P+ +A
Sbjct: 14 KDPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKAMSSEDKTPYETKA 72
Query: 95 EKRKSDYNKNMQDYNKQ 111
E K Y K +Y K+
Sbjct: 73 EADKKRYEKEKAEYAKK 89
>gi|406866133|gb|EKD19173.1| HMG box protein [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 525
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 23 RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSM 82
R +R KP D N P+RPPSA+ +F + R+ K N S + K GE W+++
Sbjct: 106 RKYRRHPKP----DDNAPERPPSAYVIFSNKMREDLKG---RNLSFTEIAKLVGENWQNL 158
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDYNK 110
S EK P+ ++A K YN + +Y K
Sbjct: 159 SPSEKDPYEQQASAAKERYNNELAEYKK 186
>gi|410955200|ref|XP_003984245.1| PREDICTED: high mobility group protein B2-like [Felis catus]
Length = 329
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 64 AKSDKARYDREMKNC---VPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHP-G 119
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
+ + K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 120 LPIGDIAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYGKDIAAY 162
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP+KP+ S++ F++ R++ K+ HP++ + A K E+WK+MSE EK+ F + A
Sbjct: 5 DPSKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSEKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQD 107
+ K+ Y++ M++
Sbjct: 65 KSDKARYDREMKN 77
>gi|121705796|ref|XP_001271161.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
gi|119399307|gb|EAW09735.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
Length = 104
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ F + R + +E +P S VGK GE+WK++S+ E+ P+ E+A
Sbjct: 20 KDPNAPKRGLSAYMFFANDNRDKVREENPGI-SFGQVGKMLGERWKALSDSERRPYEEKA 78
Query: 95 EKRKSDYNKNMQDYN 109
K Y YN
Sbjct: 79 ATDKKRYEDEKASYN 93
>gi|388582419|gb|EIM22724.1| hypothetical protein WALSEDRAFT_53977 [Wallemia sebi CBS 633.66]
Length = 137
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
K+ AKPK KD N PKR SA+ +E R + K+ +PN S VGK G KWK MS +
Sbjct: 13 KKAAKPK--KDENAPKRALSAYMYMSQEHRAEVKKENPNI-SFGEVGKVLGAKWKEMSAE 69
Query: 86 EKAPFVERA 94
EK P+ E+A
Sbjct: 70 EKKPYEEQA 78
>gi|239606992|gb|EEQ83979.1| nucleosome binding protein [Ajellomyces dermatitidis ER-3]
Length = 105
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
K KDPN PKR SA+ F E R +E +P S VGK GE+WK+++E ++AP+
Sbjct: 16 KKKKDPNAPKRGLSAYMFFANEQRDNVREENPGI-SFGQVGKVLGERWKALNEKQRAPYE 74
Query: 92 ERAEKRKSDYNKNMQDYN 109
+A K Y YN
Sbjct: 75 AKAAADKKRYEDEKASYN 92
>gi|222619008|gb|EEE55140.1| hypothetical protein OsJ_02931 [Oryza sativa Japonica Group]
Length = 157
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 52 EEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
E+FRK +KE +P+ KS+ VGKA GEKW +M+ +E+ + + A +++++Y K + +++K+
Sbjct: 85 EDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKRAEYEKAVAEFDKK 144
Query: 112 LADGVNAAEENESD 125
G +EE++ D
Sbjct: 145 KESG-ELSEESDYD 157
>gi|351712376|gb|EHB15295.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 139
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPF 90
KDPN PKRPPSAF +F E+ + K HP S V K GE W + + D+K P+
Sbjct: 39 KDPNAPKRPPSAFLLFCSEYHPKIKGGHP-RLSNGDVAKKLGEMWNNNAADDKPPY 93
>gi|299748049|ref|XP_001837422.2| hypothetical protein CC1G_01334 [Coprinopsis cinerea okayama7#130]
gi|298407795|gb|EAU84338.2| hypothetical protein CC1G_01334 [Coprinopsis cinerea okayama7#130]
Length = 558
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 35 KDPNKPKRPPSAFFVFMEEFR---KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KDPN PK+P SA+F+F++ R K KE + A KW+SM++ E+ PF+
Sbjct: 436 KDPNAPKKPLSAYFMFLQRIRADPKLVKEIFGDETETTKQSVLAAAKWRSMTDAERQPFL 495
Query: 92 ERAEKRKSDY 101
+AE+ K +Y
Sbjct: 496 AQAEQEKMEY 505
>gi|440800724|gb|ELR21759.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 128
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKRP + + F E R + KE +P+ + K KWK MSE+EK P++ A+
Sbjct: 28 DPNAPKRPKTGYIFFSAEERVKVKEDNPDL-GFGDITKQVSAKWKDMSEEEKEPYLTLAK 86
Query: 96 KRKSDYNKNMQDY 108
K K Y K M Y
Sbjct: 87 KDKERYEKEMSKY 99
>gi|361130747|gb|EHL02497.1| putative High mobility group protein 20A [Glarea lozoyensis 74030]
Length = 267
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 21 GARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWK 80
G + KR + D N P+RPPSA+ +F + R++ K N S + K GE W+
Sbjct: 126 GPQGSKRKYRRHPKADENCPERPPSAYVIFSNKMREELKG---RNLSFTEIAKLVGENWQ 182
Query: 81 SMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
+++ EK P+ ++A K YN + +Y K
Sbjct: 183 NLAPAEKEPYEQQAFSAKERYNGELAEYKK 212
>gi|270268863|gb|ACZ65967.1| Sox8b [Misgurnus anguillicaudatus]
Length = 414
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
++ KD KRP +AF V+ + R++ + +P+ + A + K G+ W+ +SE+EK PFV
Sbjct: 83 RSLKDKPHVKRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFV 141
Query: 92 ERAEKRKSDYNKNMQDYNKQ 111
E AE+ + + K+ DY Q
Sbjct: 142 EEAERLRVQHKKDHPDYKYQ 161
>gi|366988547|ref|XP_003674040.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS 4309]
gi|342299903|emb|CCC67659.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS 4309]
Length = 101
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 24 AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMS 83
A +RT + K KDPN PKR SA+ F E R K +PN + VGK GEKWK+++
Sbjct: 6 AKRRTQRRK--KDPNAPKRGLSAYMFFANENRDIVKAENPNI-TFGQVGKVLGEKWKALT 62
Query: 84 EDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENE 123
+EK P+ +A+ K Y + Y +A V+A +E E
Sbjct: 63 AEEKEPYEAKAKADKKRYESEKELY---MATQVHADDEEE 99
>gi|296199401|ref|XP_002747150.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 209
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 3 GGRSKADAVGTDSKLKSKGARAGKR--TAKP------KAAKDPNKPKRPPSAFFVFMEEF 54
GG+S+A A TD + +AG+R T P K KDPN PKR PSAFF+F E
Sbjct: 57 GGKSEAMAK-TDKAHYKREMKAGRRMKTYIPPKGETKKKFKDPNAPKRFPSAFFLFCSEC 115
Query: 55 RKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109
+ K HP SV V K GE W + + +K P+ ++A K + Y + + Y
Sbjct: 116 YPKIKGEHPGL-SVGDV-KKLGEMWSNTAAGDKQPYEKKAAKLRKKYGRELAAYG 168
>gi|225681708|gb|EEH19992.1| nucleosome binding protein [Paracoccidioides brasiliensis Pb03]
Length = 103
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ F E R +E +P S VGK GE+WK+++E ++AP+ +A
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRDNVREENPGI-SFGQVGKVLGERWKALNEKQRAPYEAKA 79
Query: 95 EKRKSDYNKNMQDYN 109
K Y YN
Sbjct: 80 AADKKRYEDEKASYN 94
>gi|183014156|dbj|BAG24407.1| hypothetical protein [Coprinopsis cinerea]
Length = 558
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 35 KDPNKPKRPPSAFFVFMEEFR---KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KDPN PK+P SA+F+F++ R K KE + A KW+SM++ E+ PF+
Sbjct: 436 KDPNAPKKPLSAYFMFLQRIRADPKLVKEIFGDETETTKQSVLAAAKWRSMTDAERQPFL 495
Query: 92 ERAEKRKSDY 101
+AE+ K +Y
Sbjct: 496 AQAEQEKMEY 505
>gi|297812489|ref|XP_002874128.1| hypothetical protein ARALYDRAFT_910355 [Arabidopsis lyrata subsp.
lyrata]
gi|297319965|gb|EFH50387.1| hypothetical protein ARALYDRAFT_910355 [Arabidopsis lyrata subsp.
lyrata]
Length = 171
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
AKD N+P P + F +FM FRK F+ + N V V K E WKSM+EDEK +V++
Sbjct: 59 AKDSNRP--PLTGFVIFMNGFRKSFRTDY-NGSLVKEVSKIGWEMWKSMTEDEKKVYVDK 115
Query: 94 A 94
A
Sbjct: 116 A 116
>gi|119491564|ref|XP_001263303.1| nucleosome binding protein (Nhp6a), putative [Neosartorya fischeri
NRRL 181]
gi|119411463|gb|EAW21406.1| nucleosome binding protein (Nhp6a), putative [Neosartorya fischeri
NRRL 181]
Length = 104
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ F E R + +E +P S VGK GE+WK++S+ ++ P+ E+A
Sbjct: 20 KDPNAPKRGLSAYMFFANENRDKVREENPGI-SFGQVGKMLGERWKALSDTDRRPYEEKA 78
Query: 95 EKRKSDYNKNMQDYN 109
K Y YN
Sbjct: 79 AADKKRYEDEKASYN 93
>gi|395857418|ref|XP_003801091.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 197
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+KAD + ++K+ R G+ K KDPN PKRP SAFF+F E+ + K HP
Sbjct: 106 AKADKAPYEREMKTYILRKGETKKK---FKDPNAPKRPLSAFFLFCSEYCPKSKGEHPGL 162
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRK 98
S+ V K G W + + D+K P+ ++A K K
Sbjct: 163 -SIGEVAKKLGVMWNNTAADDKQPYEKKAAKLK 194
>gi|154323226|ref|XP_001560927.1| hypothetical protein BC1G_00012 [Botryotinia fuckeliana B05.10]
Length = 438
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 14 DSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK 73
D+K S G KR + D + P+RPPSA+ +F + R+ K S + K
Sbjct: 108 DAKEGSSGPHGAKRKYRRHPKPDESAPERPPSAYVIFSNKMREDLKG---RALSFTEIAK 164
Query: 74 AAGEKWKSMSEDEKAPFVERAEKRKSDYN---------KNMQDYNKQLAD 114
GE W+++S EK P+ +A K YN ++ +DY++ LAD
Sbjct: 165 LVGENWQNLSPSEKEPYEHQAYTAKERYNNELAEYKKTQSFKDYSQYLAD 214
>gi|366998295|ref|XP_003683884.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS 4417]
gi|357522179|emb|CCE61450.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS 4417]
Length = 93
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PKR SA+ F E R K +P+ S VG+ GEKWK+++ +EK PF +AE
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENPD-VSFGQVGRILGEKWKALTAEEKIPFEAKAE 75
Query: 96 KRKSDYNKNMQDYN 109
K Y YN
Sbjct: 76 ADKKRYESEKALYN 89
>gi|340520749|gb|EGR50985.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
+DPN PKR SA+ F E R+ +E +P S VGK GE+WK++++ ++AP+ +A
Sbjct: 2 QDPNAPKRGLSAYMFFANEQRENVREENPG-ISFGQVGKLLGERWKALNDKQRAPYEAKA 60
Query: 95 EKRKSDYNKNMQDYN 109
K Y Q YN
Sbjct: 61 AADKKRYEDEKQAYN 75
>gi|295671102|ref|XP_002796098.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284231|gb|EEH39797.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 103
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPN PKR SA+ F E R +E +P S VGK GE+WK+++E ++AP+ +A
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRDNVREENPGI-SFGQVGKVLGERWKALNEKQRAPYEAKA 79
Query: 95 EKRKSDYNKNMQDYN 109
K Y YN
Sbjct: 80 AADKKRYEDEKASYN 94
>gi|406698555|gb|EKD01790.1| protein HMG1 [Trichosporon asahii var. asahii CBS 8904]
Length = 779
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 35 KDPNKPKRPPSAFFVFMEEFR------KQF--KEAHPNNKSVATVGKAAGEKWKSMSEDE 86
KDPN PK+P SA+F+F++ R +Q E+ +SV A E+W+ +S+DE
Sbjct: 556 KDPNAPKKPLSAYFLFLKGIRENDDLKRQVWGAESETTRQSVL-----AAERWRGLSDDE 610
Query: 87 KAPFVERAEKRKSDY 101
K P++++AEK K +Y
Sbjct: 611 KRPYLQQAEKDKQEY 625
>gi|407262070|ref|XP_003945989.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEK 87
KDPN PKRPPSAFF+F +R + K HP S+ V K GE W + + D+K
Sbjct: 90 KDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL-SIGDVAKKRGEMWNNTAADDK 141
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DP K + S++ F++ R++ K+ HP+ + + + K E+WK+MS EK F + A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
K+ Y + M+ Y
Sbjct: 65 IADKARYEREMKTY 78
>gi|194208319|ref|XP_001498869.2| PREDICTED: high mobility group protein B2-like [Equus caballus]
Length = 210
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 64 AKSDKARYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNK + S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKARGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|91091374|ref|XP_973014.1| PREDICTED: similar to AGAP012335-PA [Tribolium castaneum]
Length = 712
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 27 RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
R + K +KD NKPKRP +AF +++ E R + K +P K + + K GE WK + +
Sbjct: 540 RQKRAKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGGEMWKELK--D 596
Query: 87 KAPFVERAEKRKSDYNKNMQDY 108
K+ + +A K K +YNK M++Y
Sbjct: 597 KSEWEGKAAKAKEEYNKAMKEY 618
>gi|449549519|gb|EMD40484.1| hypothetical protein CERSUDRAFT_111079 [Ceriporiopsis subvermispora
B]
Length = 596
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 35 KDPNKPKRPPSAFFVFMEEFR---KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
KDPN PK+P SA+F+F++ R + +E + A KW+SM++DE+ PF+
Sbjct: 460 KDPNAPKKPLSAYFMFLQRIRSDPELVREVFGDETETTKQSVLAAYKWRSMTDDERKPFL 519
Query: 92 ERAEKRKSDY 101
+AE+ K +Y
Sbjct: 520 AQAEQEKLEY 529
>gi|323450291|gb|EGB06173.1| hypothetical protein AURANDRAFT_72060 [Aureococcus anophagefferens]
Length = 667
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DPN PK SA+ +F R + KE HP+ S+ +G+ G++WK +++D+K P+V+ A
Sbjct: 578 DPNAPKGKSSAYIMFGNAKRAEVKEQHPDF-SLGDIGRELGKRWKELTDDDKKPYVDLAT 636
Query: 96 KRKSDYNKNMQDY 108
Y++ M Y
Sbjct: 637 ADAERYDREMAAY 649
>gi|312190935|gb|ADQ43366.1| HMGBa [Litopenaeus vannamei]
Length = 222
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
KDPNKPKR SAFF + + R + + A+P+ SV V K G +W + EDEK + + A
Sbjct: 102 KDPNKPKRALSAFFYYANDERPKVRAANPDF-SVGEVAKELGRQWNELGEDEKVKYEKLA 160
Query: 95 EKRKSDYNKNMQDY 108
E+ ++ Y++ M Y
Sbjct: 161 EEDRARYDREMTAY 174
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 39 KPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
KP+ +A+ F++ R + K+ HP+ N A + E+WK+MS+ EK F + AE
Sbjct: 13 KPRGRMTAYAFFVQTCRTEHKKLHPDENVQFAEFSRQCSERWKTMSDKEKKKFHDMAEDD 72
Query: 98 KSDYNKNMQDY 108
K Y++ M+D+
Sbjct: 73 KKRYDEEMKDF 83
>gi|270009646|gb|EFA06094.1| hypothetical protein TcasGA2_TC008936 [Tribolium castaneum]
Length = 306
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
+PN KRP +AF V+ + R++ E P+ + A + K G +WK + +DE+ PF+E AE
Sbjct: 40 NPNHIKRPMNAFMVWSQIERRKICEVQPDMHN-AEISKKLGRRWKELKDDERQPFIEEAE 98
Query: 96 KRKSDYNKNMQDY 108
+ + + + DY
Sbjct: 99 RLRQLHQREYPDY 111
>gi|355778495|gb|EHH63531.1| hypothetical protein EGM_16518 [Macaca fascicularis]
Length = 210
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 64 AKSDKARYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP-NNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP ++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|170591488|ref|XP_001900502.1| High mobility group protein 1.2 [Brugia malayi]
gi|158592114|gb|EDP30716.1| High mobility group protein 1.2, putative [Brugia malayi]
Length = 235
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
+ KDPN PKR SAFF F + R + ++ HP K V V + G WK++ E+E+A +
Sbjct: 107 RVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGEEERAVYE 165
Query: 92 ERAEKRKSDYNKNMQDY 108
+A + K Y + M++Y
Sbjct: 166 RKALEDKERYAEEMRNY 182
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 33 AAKDPNKPKRPPSAFFVFM--EEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAP 89
+AK P + K P FFV M EE +K++ PN N V + K EKWK+MS+DEK
Sbjct: 22 SAKPPVRGKTSPYGFFVKMCYEEHKKKY----PNENVQVTEISKKCSEKWKTMSDDEKRR 77
Query: 90 FVERAEKRKSDYNKNMQDY 108
F E A+K Y + Y
Sbjct: 78 FFELAQKDAERYQAEVAAY 96
>gi|347962987|ref|XP_311155.4| AGAP000005-PA [Anopheles gambiae str. PEST]
gi|333467412|gb|EAA06432.5| AGAP000005-PA [Anopheles gambiae str. PEST]
Length = 457
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 15 SKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKA 74
S + KGA G R K K KDPN PKR SAFF F + R + K +P V + K
Sbjct: 287 SYVPPKGAVVG-RGKKRKQFKDPNAPKRSLSAFFWFCHDERNKVKALNP-EYGVGDIAKE 344
Query: 75 AGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
G KW M + K + + AEK K Y + M +Y
Sbjct: 345 LGRKWSDMDAEIKQKYEQMAEKDKQRYEQEMTEY 378
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSV-ATVGKAAGEKWKSMSEDEKAPFVERAEK 96
NKP+ +A+ F++ R++ K+ HP + + A + E+WK+M + EK F E AEK
Sbjct: 217 NKPRGRMTAYAFFVQTCREEHKKKHPEEQVIFAEFSRKCAERWKTMLDKEKQRFHEMAEK 276
Query: 97 RKSDYNKNMQDY 108
K+ Y MQ Y
Sbjct: 277 DKARYELEMQSY 288
>gi|328716392|ref|XP_003245920.1| PREDICTED: hypothetical protein LOC100572600 [Acyrthosiphon pisum]
Length = 346
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 29 AKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKA 88
AKP K KRP +AF V+ + R++ + +P + A + K G+ W+ +S D+K
Sbjct: 65 AKPPTEKKNYHVKRPMNAFMVWAQAARRKLADQYPQLHN-AELSKTLGQLWRLLSGDDKQ 123
Query: 89 PFVERAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSEVND 133
PF+E AEK + + DY Q A G+ ++ +S KSEVND
Sbjct: 124 PFIEEAEKLRVLHKNRYPDYKYQPRRRKAAKGIPKIQD-KSKHDKSEVND 172
>gi|146412508|ref|XP_001482225.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
gi|146392989|gb|EDK41147.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
Length = 90
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
DP+ PKR SA+ F E R + +P + VGK GEKWK+M+ DEK P+ +AE
Sbjct: 13 DPDAPKRSLSAYMFFANENRDIIRAENPG-IAFGQVGKLLGEKWKAMNADEKVPYETKAE 71
Query: 96 KRKSDYNKNMQDYNKQ 111
K Y K +Y K+
Sbjct: 72 ADKKRYEKEKAEYAKR 87
>gi|84380305|gb|ABC58685.1| HMG box protein SoxE3 [Petromyzon marinus]
Length = 539
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KRP +AF V+ + R++ + +P+ + A + K G+ W+ +SE+EK PFVE AE+ +
Sbjct: 130 KRPMNAFMVWAQAARRKLADQYPHLHN-AELSKTLGKLWRLLSENEKRPFVEEAERLRVQ 188
Query: 101 YNKNMQDYNKQ 111
+ K+ DY Q
Sbjct: 189 HKKDHPDYKYQ 199
>gi|379698908|ref|NP_001243925.1| SoxE [Bombyx mori]
gi|326579761|gb|ADZ96251.1| SoxE [Bombyx mori]
Length = 222
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 41 KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
KRP +AF VF + R++ P+ + A + K+ G WK++SE+EK PF++ A+K ++
Sbjct: 49 KRPMNAFMVFAQAMRRRLSAERPSPHN-AELSKSLGSMWKNLSEEEKLPFIKEADKLRTQ 107
Query: 101 YNKNMQDYNKQ 111
+ K DY Q
Sbjct: 108 HKKQHPDYKYQ 118
>gi|8393536|ref|NP_058883.1| high mobility group protein B2 [Rattus norvegicus]
gi|293340790|ref|XP_001063065.2| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|293352163|ref|XP_573272.3| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|1708260|sp|P52925.2|HMGB2_RAT RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|1304193|dbj|BAA12350.1| HMG2 [Rattus norvegicus]
gi|51259308|gb|AAH78866.1| Hmgb2 protein [Rattus norvegicus]
gi|58476482|gb|AAH89854.1| Hmgb2 protein [Rattus norvegicus]
gi|77567606|gb|AAI07456.1| Hmgb2 protein [Rattus norvegicus]
gi|149032266|gb|EDL87172.1| rCG59188 [Rattus norvegicus]
Length = 210
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 64 AKSDKARYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|343427904|emb|CBQ71429.1| related to NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 252
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 20 KGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKW 79
K ++A KR K K +DP+ PKRPPSA+ +F E R++ ++ HP +GK + E W
Sbjct: 155 KISKAQKR--KEKRLRDPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKVS-EAW 211
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
K+++++++ + ++ + +N+ +D+
Sbjct: 212 KALTDEQRRVYQDKTTENMVTWNQQKKDH 240
>gi|308499102|ref|XP_003111737.1| CRE-HMG-1.2 protein [Caenorhabditis remanei]
gi|308239646|gb|EFO83598.1| CRE-HMG-1.2 protein [Caenorhabditis remanei]
Length = 238
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
+A KDP+ PKR SAFF + ++ R + + AHP+ K V V + G+ WK + ++ K +
Sbjct: 129 RAKKDPHAPKRALSAFFFYSQDKRPEIQSAHPDWK-VGQVAQELGKMWKLVPQETKDLYE 187
Query: 92 ERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDD 136
++A+ K Y + M+ Y ++ + E+ E D V DD
Sbjct: 188 QKAQADKDRYAEEMRHYKSEM-QKMTGMEQYEDDHLGHHVVHVDD 231
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 35 KDPNKPKRPPSAFFVFM--EEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFV 91
K P + K P FFV M EE +K++ PN N V + K EKWK+M +DEK F
Sbjct: 44 KPPVRGKTSPYGFFVKMCYEEHKKKY----PNENVQVTEISKKCSEKWKTMVDDEKRRFY 99
Query: 92 ERAEK 96
E A+K
Sbjct: 100 ELAQK 104
>gi|91086963|ref|XP_973116.1| PREDICTED: similar to Putative transcription factor SOX-14
[Tribolium castaneum]
Length = 312
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
+PN KRP +AF V+ + R++ E P+ + A + K G +WK + +DE+ PF+E AE
Sbjct: 46 NPNHIKRPMNAFMVWSQIERRKICEVQPDMHN-AEISKKLGRRWKELKDDERQPFIEEAE 104
Query: 96 KRKSDYNKNMQDY 108
+ + + + DY
Sbjct: 105 RLRQLHQREYPDY 117
>gi|147777965|emb|CAN70902.1| hypothetical protein VITISV_028213 [Vitis vinifera]
Length = 532
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
DPNKPK+P S+F +F +E R+ F + P NN +T+ KWK + E E+ + ++
Sbjct: 448 DPNKPKKPASSFLLFSKEARRSFLQERPGINN---STLNALISVKWKELDEQERKIWNDK 504
Query: 94 AEKRKSDYNKNMQDYNK 110
A++ Y K +++YNK
Sbjct: 505 AKEAMEAYQKELEEYNK 521
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 42 RPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVE 92
P SAFF+F +E R BK+V + K AGE+WK+M+E +K P+ E
Sbjct: 298 HPVSAFFLFSKERRAAL---LXEBKNVLEIAKIAGEEWKNMTEKQKRPYEE 345
>gi|291413997|ref|XP_002723251.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 64 AKSDKARYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQMCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|431918327|gb|ELK17554.1| High mobility group protein B2 [Pteropus alecto]
Length = 209
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 64 AKSDKARYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|343427561|emb|CBQ71088.1| probable NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 99
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 14 DSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGK 73
D+K KS + KRT K K KDP PKRP SA+ F ++ R++ K A+P + VG+
Sbjct: 5 DTKTKSSTS-TQKRTTKSK--KDPAAPKRPLSAYMFFSQDHRERVKTANPE-AGFSDVGR 60
Query: 74 AAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111
G KW MS+ EK P+ + A + K+ YNK+
Sbjct: 61 LLGAKWNEMSDAEKKPYNDMANRDKARAEAEKAAYNKR 98
>gi|322706965|gb|EFY98544.1| high-mobility group 20A [Metarhizium anisopliae ARSEF 23]
Length = 460
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 23 RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSM 82
R +R KP D N P+RPPSA+ +F + R+ K+ +N + + K GE W+S+
Sbjct: 107 RKYRRHPKP----DENSPERPPSAYVLFSNKMRETLKD---HNLTFTEIAKLVGENWQSL 159
Query: 83 SEDEKAPFVERAEKRKSDYNKNMQDYNK 110
+EK F +A K YN+ + +Y K
Sbjct: 160 RPEEKDVFESQANFAKEKYNRELTEYKK 187
>gi|321478856|gb|EFX89813.1| hypothetical protein DAPPUDRAFT_232871 [Daphnia pulex]
Length = 190
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 20 KGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKW 79
KGA G+ K K KDPN PKR SAFF F + R K AHP +V + K G++W
Sbjct: 85 KGAGRGR---KRKQVKDPNAPKRSLSAFFWFCNDERGNVKAAHPEY-TVGDIAKDLGKQW 140
Query: 80 KSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112
+ E K+ + AEK K+ Y + Y K+L
Sbjct: 141 GEVDESTKSKYEAMAEKDKARYERENNAYKKKL 173
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAP 89
P+A D NKP+ +A+ F++ R++ K+ HP+ N + K E+WK+MS+ EK
Sbjct: 2 PRAKADANKPRGRMTAYAFFVQTCREEHKKKHPDENVVFSEFSKKCAERWKTMSDKEKKR 61
Query: 90 FVERAEKRKSDYNKNMQDY 108
F E AE+ K ++ M+ Y
Sbjct: 62 FQEMAERDKVRFDDEMRHY 80
>gi|291413747|ref|XP_002723128.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 88 AKSDKARYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 144
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 145 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 186
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK F + A
Sbjct: 29 DPNKPRGKMSSYAFFVQMCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKPKFEDMA 88
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 89 KSDKARYDREMKNY 102
>gi|291385922|ref|XP_002709517.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
gi|344288245|ref|XP_003415861.1| PREDICTED: high mobility group protein B2-like [Loxodonta africana]
Length = 210
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 64 AKSDKARYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
>gi|259013590|ref|NP_001158343.1| SRY-box containing gene 10b [Oryzias latipes]
gi|227336644|gb|ACP21269.1| SRY-box containing gene 10b [Oryzias latipes]
Length = 484
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 38 NKP--KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
NKP KRP +AF V+ + R++ + HP+ + A + K G+ W+ ++E +K PF+E AE
Sbjct: 99 NKPHVKRPMNAFMVWAQAARRKLADQHPHLHN-AELSKTLGKLWRLLNESDKRPFIEEAE 157
Query: 96 KRKSDYNKNMQDYNKQ 111
+ + + K+ DY Q
Sbjct: 158 RLRKQHKKDYPDYKYQ 173
>gi|297674678|ref|XP_002815340.1| PREDICTED: high mobility group protein B2 isoform 1 [Pongo abelii]
gi|297674680|ref|XP_002815341.1| PREDICTED: high mobility group protein B2 isoform 2 [Pongo abelii]
gi|395735499|ref|XP_003776594.1| PREDICTED: high mobility group protein B2 [Pongo abelii]
gi|402870856|ref|XP_003899415.1| PREDICTED: high mobility group protein B2 isoform 1 [Papio anubis]
gi|402870858|ref|XP_003899416.1| PREDICTED: high mobility group protein B2 isoform 2 [Papio anubis]
gi|402871219|ref|XP_003899573.1| PREDICTED: high mobility group protein B2-like [Papio anubis]
gi|90086209|dbj|BAE91657.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 6 SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
+K+D D ++K+ + K KDPN PKRPPSAFF+F E R + K HP
Sbjct: 64 AKSDKARYDREMKN---YVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 66 KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
S+ K GE W S +K P+ ++A K K Y K++ Y
Sbjct: 121 -SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
DPNKP+ S++ F++ R++ K+ HP++ + A K E+WK+MS EK+ F + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 95 EKRKSDYNKNMQDY 108
+ K+ Y++ M++Y
Sbjct: 65 KSDKARYDREMKNY 78
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.301 0.121 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,392,467,714
Number of Sequences: 23463169
Number of extensions: 95037999
Number of successful extensions: 1144281
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4653
Number of HSP's successfully gapped in prelim test: 8496
Number of HSP's that attempted gapping in prelim test: 1037168
Number of HSP's gapped (non-prelim): 72563
length of query: 147
length of database: 8,064,228,071
effective HSP length: 110
effective length of query: 37
effective length of database: 9,778,246,777
effective search space: 361795130749
effective search space used: 361795130749
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 71 (32.0 bits)