BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032085
         (147 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
           PE=1 SV=1
          Length = 138

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/147 (61%), Positives = 117/147 (79%), Gaps = 9/147 (6%)

Query: 1   MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
           MKGG SKA+A  TD +LK++G +AGK+T K     DPN+PKRPPSAFFVF+E+FRK+F  
Sbjct: 1   MKGGESKAEATSTDQRLKTRGRKAGKKTKK-----DPNQPKRPPSAFFVFLEDFRKEFNL 55

Query: 61  AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
           A+PNNKSVATVGKAAG +WK+M++++KAP+V +AE RK++Y KN+Q YN +LA G N  E
Sbjct: 56  ANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-RE 114

Query: 121 ENESDKSKSEVNDEDDEEGSGEEEDDD 147
           E++SDKSKSEV++   EE   E EDDD
Sbjct: 115 EDDSDKSKSEVDEAVSEE---EAEDDD 138


>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
          Length = 144

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 105/138 (76%), Gaps = 6/138 (4%)

Query: 1   MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
           MKGG+SKA    +D+KL  K   A  +  K KA KDPNKPKRPPSAFFVFME+FRK +KE
Sbjct: 1   MKGGKSKAK---SDNKLAVKKQAADTKKTK-KAVKDPNKPKRPPSAFFVFMEDFRKTYKE 56

Query: 61  AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
            HPNNKSVA VGKA G+KWK ++  EKAPF+ +AEKRK +Y KN+Q YNK+      AAE
Sbjct: 57  KHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKK--QAAGAAE 114

Query: 121 ENESDKSKSEVNDEDDEE 138
           E ESDKS+SEVND+D+++
Sbjct: 115 EEESDKSRSEVNDDDEDQ 132


>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
           PE=1 SV=1
          Length = 141

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 95/132 (71%), Gaps = 7/132 (5%)

Query: 1   MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
           MKG +SKA+   T   +  K A+  K      AAKDPNKPKRP SAFFVFME+FR  +KE
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAKG-----AAKDPNKPKRPSSAFFVFMEDFRVTYKE 55

Query: 61  AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAE 120
            HP NKSVA VGKA GEKWKS+S+ EKAP+V +A+KRK +Y KNM+ YNK+L +G    E
Sbjct: 56  EHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG--PKE 113

Query: 121 ENESDKSKSEVN 132
           + ESDKS SEVN
Sbjct: 114 DEESDKSVSEVN 125


>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
           PE=1 SV=1
          Length = 144

 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/133 (59%), Positives = 100/133 (75%), Gaps = 6/133 (4%)

Query: 1   MKGGRSKADAVGTDSKLKSKGAR-AGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFK 59
           MKG +SK +   +   +  K A+ AG+  A   AAKDPNKPKRP SAFFVFME+FR+ FK
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKA---AAKDPNKPKRPASAFFVFMEDFRETFK 57

Query: 60  EAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA 119
           + +P NKSVATVGKAAG+KWKS+S+ EKAP+V +AEKRK +Y KN++ YNK+L +G    
Sbjct: 58  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG--PK 115

Query: 120 EENESDKSKSEVN 132
           E+ ESDKS SEVN
Sbjct: 116 EDEESDKSVSEVN 128


>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
          Length = 152

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 89/119 (74%), Gaps = 4/119 (3%)

Query: 1   MKGGRSKADAVGTDSKL----KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRK 56
           MKGG+SK ++   D KL    K    +A K   K KAAKDPNKPKRPPSAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 57  QFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
            F + HP NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119


>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
          Length = 149

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 102/137 (74%), Gaps = 8/137 (5%)

Query: 1   MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPKAA---KDPNKPKRPPSAFFVFMEEFR 55
           MKGG+SK ++   ++KL    KGA A K   KP      KDPNKPKRPPSAFFVFM +FR
Sbjct: 1   MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60

Query: 56  KQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
           +Q+K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA K+K +Y   +Q YNK+L +G
Sbjct: 61  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EG 119

Query: 116 VNAAEENESDKSKSEVN 132
            +  +E  SDKSKSEVN
Sbjct: 120 KD--DEEGSDKSKSEVN 134


>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
           PE=1 SV=1
          Length = 178

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 83/108 (76%), Gaps = 5/108 (4%)

Query: 32  KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
           KA KDPNKPKR PSAFFVF+E+FR  FK+ +PN K+V+ VGKA G+KWKSMS+ EKAP+ 
Sbjct: 45  KAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYE 104

Query: 92  ERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVNDEDDEEG 139
           E+A KRK++Y K M  YNK L +G      +ES+KS+SE+NDED+  G
Sbjct: 105 EKAAKRKAEYEKQMDAYNKNLEEG-----SDESEKSRSEINDEDEASG 147


>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
          Length = 157

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 3/112 (2%)

Query: 1   MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQF 58
           MKG +SK  A   D+KL  KSKGA    +  K KA KDPNKPKR PSAFFVFMEEFRK+F
Sbjct: 1   MKGAKSK-GAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 59

Query: 59  KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
           KE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK +  YNK
Sbjct: 60  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111


>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
           PE=2 SV=1
          Length = 125

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 88/115 (76%), Gaps = 6/115 (5%)

Query: 1   MKGGRSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKE 60
           MK  +++ ++  TD +LK +G + GK+T      KDPN+PK+PPS FFVF+++FRK+F  
Sbjct: 1   MKDNQTEVESRSTDDRLKVRGNKVGKKT------KDPNRPKKPPSPFFVFLDDFRKEFNL 54

Query: 61  AHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115
           A+P+NKSV  VG+AAG+KWK+M+E+E+APFV +++ +K++Y   MQ YN +LA+G
Sbjct: 55  ANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANG 109


>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
          Length = 161

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 84/113 (74%), Gaps = 4/113 (3%)

Query: 1   MKGGRSKADAVGTDSKL--KSKGA-RAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQ 57
           MKG +SK  A   D+KL  KSKGA +   +  K KA KDPNKPKR PSAFFVFM EFR++
Sbjct: 1   MKGAKSK-GAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREE 59

Query: 58  FKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110
           FK+ +P NKSVA VGKAAGE+WKS+SE EKAP+V +A K K +YNK +  YNK
Sbjct: 60  FKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112


>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
           PE=2 SV=2
          Length = 151

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 62/88 (70%)

Query: 40  PKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKS 99
           PK+P +AFF F+++FRKQ++E +P+ KS+  +GK  GEKWK+M+ +EK  + + A +++ 
Sbjct: 63  PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122

Query: 100 DYNKNMQDYNKQLADGVNAAEENESDKS 127
           ++++ M +Y K++  G +   E +SD S
Sbjct: 123 EFHRAMTEYTKRMESGAHDESETDSDYS 150


>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
          Length = 200

 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)

Query: 6   SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
           +KAD V  D ++K  G          K  KDPN PKRPPS FF+F  EFR + K A+P  
Sbjct: 64  AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118

Query: 66  KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
            S+  V K  GE W ++S+ EK P++ +A K K  Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160



 Score = 37.7 bits (86), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 45  SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
           SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct: 14  SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73

Query: 104 NMQDY 108
            M+DY
Sbjct: 74  EMKDY 78


>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
           PE=1 SV=1
          Length = 241

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 54/75 (72%), Gaps = 3/75 (4%)

Query: 32  KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT-VGKAAGEKWKSMSEDEKAPF 90
           K++   NKPKRP +AFF+FM +FRK FK  H  N S+A    K  GEKWKS++E+EK  +
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVY 164

Query: 91  VERAEKRKSDYNKNM 105
           +++A + K++YNK++
Sbjct: 165 LDKAAELKAEYNKSL 179


>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
          Length = 200

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)

Query: 6   SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
           +KAD V  D ++K  G          K  KDPN PKRPPS FF+F  EFR + K  +P  
Sbjct: 64  AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118

Query: 66  KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
            S+  V K  GE W ++S++EK P+V +A K K  Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 160



 Score = 38.5 bits (88), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 45  SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
           SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct: 14  SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73

Query: 104 NMQDY 108
            M+DY
Sbjct: 74  EMKDY 78


>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
          Length = 200

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 6   SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
           +KAD V  D ++K  G          K  KDPN PKRPPS FF+F  EFR + K  +P  
Sbjct: 64  AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118

Query: 66  KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
            S+  V K  GE W ++++ EK P++ +A K K  Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160



 Score = 37.7 bits (86), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 45  SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
           SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EK+ F E A+  K  Y++
Sbjct: 14  SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73

Query: 104 NMQDY 108
            M+DY
Sbjct: 74  EMKDY 78


>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
          Length = 202

 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 6   SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
           +KAD V  D ++K  G          K  KDPN PKRPPSAFF+F  EFR + K  +P  
Sbjct: 64  AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSAFFLFCSEFRPKIKSTNPGI 118

Query: 66  KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
            S+  V K  GE W ++S+ EK P+  +A K K  Y K++ DY
Sbjct: 119 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160



 Score = 39.3 bits (90), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 45  SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
           SA+  F++  R++ K+ +P    + A   K   E+WK+MS  EKA F E A+  K  Y++
Sbjct: 14  SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73

Query: 104 NMQDY 108
            M+DY
Sbjct: 74  EMKDY 78


>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
           sapiens PE=5 SV=1
          Length = 187

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 9/104 (8%)

Query: 6   SKADAVGTDSKLKSKG-ARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
           +KAD V  D ++K  G A+ GK+       KDPN PKRPPS FF+F  EF  + K  +P 
Sbjct: 64  AKADKVHYDQEIKDYGPAKGGKK-------KDPNAPKRPPSGFFLFCSEFCPKSKSTNPG 116

Query: 65  NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
              +  V K  GE WK++++ EK P++ +A K K  Y K++  Y
Sbjct: 117 I-PIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVY 159



 Score = 38.1 bits (87), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 45  SAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103
           SA+  F++  R++ K+ +P    + A   K   E+WK+MS+ EK+ F E A+  K  Y++
Sbjct: 14  SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73

Query: 104 NMQDY 108
            ++DY
Sbjct: 74  EIKDY 78


>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
          Length = 201

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 6   SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
           +KAD V  D ++K  G          K  KDPN PKRPPS FF+F  EFR + K  +P  
Sbjct: 63  AKADKVRYDREMKDYGP-----AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117

Query: 66  KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
            S+  V K  GE W ++S+ EK P+  +A K K  Y K++ DY
Sbjct: 118 -SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 159



 Score = 38.5 bits (88), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 45  SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104
           SA+  F++  R++ K+      + A   K   E+WK+MS  EKA F E A+  K  Y++ 
Sbjct: 14  SAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDRE 73

Query: 105 MQDY 108
           M+DY
Sbjct: 74  MKDY 77


>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
          Length = 204

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 4/103 (3%)

Query: 6   SKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN 65
           +K D V  + +++S     G+   K K  KDPN PKRP SAFF+F  +FR Q K   P  
Sbjct: 63  AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119

Query: 66  KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
            S+  V K  GEKW +++ ++K P+ ++A + K  Y K++  Y
Sbjct: 120 -SIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAY 161



 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVER 93
           KDP KP+   S++  F++  R++ K+ HP  + + +   K   E+WK+MS  EK  F + 
Sbjct: 3   KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62

Query: 94  AEKRKSDYNKNMQDY 108
           A+  K  Y + M+ Y
Sbjct: 63  AKLDKVRYEREMRSY 77


>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
           SV=2
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
           SV=3
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
           SV=3
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
           SV=1
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
           SV=1
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
           GN=HMGB1 PE=1 SV=1
          Length = 180

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 55  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 113

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 114 AKLKEKYEKDIAAY 127


>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKHPYEKKA 148

Query: 95  EKRKSDYNKNMQDY 108
            K K  Y K++  Y
Sbjct: 149 AKLKEKYEKDIAAY 162



 Score = 42.4 bits (98), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ HP+ + + +   K   E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKARYEREMKTY 78


>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
           PE=2 SV=1
          Length = 456

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
           DP KPK P SAF V+  E R   +E    NKSV  V K  GE+WK++S+ +KAP+ + A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307

Query: 96  KRKSDYNKNMQDYNK 110
           K K  Y + M++Y +
Sbjct: 308 KNKETYLQAMEEYKR 322



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 5/80 (6%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
           DPNKPK+P S++F+F ++ RK+  E  P  NN   ATV      KWK +SE+EK  +  +
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNN---ATVTALISLKWKELSEEEKQVYNGK 431

Query: 94  AEKRKSDYNKNMQDYNKQLA 113
           A K    Y K ++ YNK+ A
Sbjct: 432 AAKLMEAYKKEVEAYNKKSA 451



 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 41  KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100
           KRP S++ ++ ++   + K+ +P      T     G KWKS+S ++K P+ ER +  K  
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKET-SNILGAKWKSLSAEDKKPYEERYQVEKEA 197

Query: 101 Y 101
           Y
Sbjct: 198 Y 198


>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
           PE=2 SV=1
          Length = 446

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
           DP KPK+P SA+ ++  E R   K     NKSV  V K AGE+WK++SE++KAP+ + A+
Sbjct: 242 DPLKPKQPISAYLIYANERRAALK---GENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298

Query: 96  KRKSDYNKNMQDYNK 110
           K K  Y + M+ Y +
Sbjct: 299 KNKEIYLQEMEGYKR 313



 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHP--NNKSVATVGKAAGEKWKSMSEDEKAPFVER 93
           DPNKPK+P S++F+F ++ RK   E HP  NN   +TV      KW  + E+EK  +  +
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINN---STVTAHISLKWMELGEEEKQVYNSK 424

Query: 94  AEKRKSDYNKNMQDYNK 110
           A +    Y K +++YNK
Sbjct: 425 AAELMEAYKKEVEEYNK 441


>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
          Length = 706

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 26  KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
           K+  + K  KDPN PKRP SA+ +++   R++ K  HP   S+  + K AGE WK+MS++
Sbjct: 531 KKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPG-ISITDLSKKAGELWKAMSKE 589

Query: 86  EKAPFVERAEKRKSDYNKNMQDYN 109
           +K  +  +AE  K DY K M++Y+
Sbjct: 590 KKEEWDRKAEDAKRDYEKAMKEYS 613


>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
          Length = 693

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 30  KPKA--AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEK 87
           KP+A   KDP  PKRP SA+ +++   R++ K  +P   S+  + K AGE WK+MS D+K
Sbjct: 529 KPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPG-ISITDLSKKAGEIWKNMSRDKK 587

Query: 88  APFVERAEKRKSDYNKNMQDYN 109
             +  RAE+ K DY K M++YN
Sbjct: 588 EEWDRRAEEAKRDYEKAMKEYN 609


>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
          Length = 709

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 26  KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
           K+  + K  KDPN PKRP SA+ +++   R++ K  HP   S+  + K AGE WK MS++
Sbjct: 533 KKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591

Query: 86  EKAPFVERAEKRKSDYNKNMQDY 108
           +K  +  +AE  + DY K M++Y
Sbjct: 592 KKEEWDRKAEDARRDYEKAMKEY 614


>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
          Length = 207

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
           DPN PKRPPSAFF+F  E R + K  HP   S+    K  GE W      +K P+ ++A 
Sbjct: 91  DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149

Query: 96  KRKSDYNKNMQDY 108
           K K  Y K++  Y
Sbjct: 150 KLKEKYEKDIAAY 162



 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DPNKP+   S++  F++  R++ K+ HP++  + A   +   E+WK+MS  EK  F E A
Sbjct: 5   DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y++ M++Y
Sbjct: 65  KGDKARYDREMKNY 78


>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
          Length = 186

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
           DP +P+RPPS+F +F ++   Q K  +P N SV  V KA G+ W + ++ EK P+ +R  
Sbjct: 89  DPQEPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVA 147

Query: 96  KRKSDYNKNMQDYNKQL 112
             ++ Y + ++ Y KQ 
Sbjct: 148 LLRAKYFEELELYRKQC 164



 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 39  KPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
           KPK   S++  F+  +R +FKE  PN         +   EKW+S+S+ EKA +   A+  
Sbjct: 8   KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67

Query: 98  KSDYNKNMQDY 108
           K+ Y + M +Y
Sbjct: 68  KARYQEEMMNY 78


>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain JEC21 / ATCC MYA-565)
           GN=NHP6 PE=3 SV=1
          Length = 116

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 13/98 (13%)

Query: 11  VGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT 70
           V T    KS  + A KRT K     DPNKPKR  SA+  F++++R++ K  +P   +   
Sbjct: 4   VSTKDSKKSTASDAKKRTKK-----DPNKPKRALSAYMFFVQDYRERIKTENP-EATFGD 57

Query: 71  VGKAAGEKWKSMSEDEKAPF-------VERAEKRKSDY 101
           VGK  G KW+ M+E+EK P+        ERA++  +DY
Sbjct: 58  VGKLLGIKWREMNENEKKPYEAKAKADKERADRENADY 95


>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain B-3501A) GN=NHP6 PE=3 SV=1
          Length = 116

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 13/98 (13%)

Query: 11  VGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVAT 70
           V T    KS  + A KRT K     DPNKPKR  SA+  F++++R++ K  +P   +   
Sbjct: 4   VSTKDSKKSTASDAKKRTKK-----DPNKPKRALSAYMFFVQDYRERIKTENP-EATFGD 57

Query: 71  VGKAAGEKWKSMSEDEKAPF-------VERAEKRKSDY 101
           VGK  G KW+ M+E+EK P+        ERA++  +DY
Sbjct: 58  VGKLLGIKWREMNENEKKPYEAKAKADKERADRENADY 95


>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
          Length = 708

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 1/83 (1%)

Query: 26  KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSED 85
           +++++ K  KDPN PKRP SA+ +++   R++ K  HP   S+  + K AGE WK MS++
Sbjct: 533 RKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKE 591

Query: 86  EKAPFVERAEKRKSDYNKNMQDY 108
           +K  +  +AE  + +Y K M++Y
Sbjct: 592 KKEEWDRKAEDARREYEKAMKEY 614


>sp|P40644|HMGH_STRPU High mobility group protein 1 homolog OS=Strongylocentrotus
           purpuratus GN=HMG1 PE=2 SV=1
          Length = 200

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 5   RSKADAVGTDSKLKSKGARAGKRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPN 64
           +S  D V  D +++S     G++  + +  KDP+ PKR  SAFF+F  E R   K  HPN
Sbjct: 65  KSMRDKVRYDREMQSYKPPKGEKNKRRRRRKDPDAPKRNLSAFFIFSGENRAAIKSVHPN 124

Query: 65  NKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108
             SV  + K    +W++M+  EK PF + A K K  Y K M +Y
Sbjct: 125 W-SVGDIAKELAVRWRAMTAGEKIPFDKGAAKDKERYIKAMAEY 167



 Score = 38.9 bits (89), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVER 93
           +D +KP+   SA+  F+++ R +  + HPN+    A   K    +WK++ E  K  F E+
Sbjct: 6   RDSSKPRGRMSAYAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWKALEEKGKGVFHEK 65

Query: 94  AEKRKSDYNKNMQDY 108
           + + K  Y++ MQ Y
Sbjct: 66  SMRDKVRYDREMQSY 80


>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
           GN=HMGB1P1 PE=5 SV=1
          Length = 211

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           KDPN PKRPPSAFF+F  E+  + K  HP   S+  V K  GE W + + D+K P  ++A
Sbjct: 90  KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPGEKKA 148

Query: 95  EKRKSDYNKNMQDYN 109
            K K  Y K++  Y 
Sbjct: 149 AKLKEKYEKDIAAYQ 163



 Score = 38.5 bits (88), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPN-NKSVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DP KP+   S++  F++  R++ K+ H + + + +       E+WK+MS  EK  F + A
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y + M+ Y
Sbjct: 65  KADKTHYERQMKTY 78


>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
          Length = 108

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 27  RTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDE 86
           R AK    KDPN PKR  SAF  F  E R++ K  +P+  +   +G   G++WK ++  E
Sbjct: 3   RAAKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPD-ATFGQLGSLLGKRWKELTSTE 61

Query: 87  KAPFVERAEKRKSDYNKNMQDYNKQLADG 115
           + P+ E+A + K  Y +  ++Y+ +LA+G
Sbjct: 62  REPYEEKARQDKERYERERKEYDTKLANG 90


>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
          Length = 194

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
           DP+ P+RPPS+F +F ++   Q K  +P+  SV  V KA+G+ W + ++ +K P+ +RA 
Sbjct: 89  DPHAPRRPPSSFLLFCQDHYAQLKSENPS-WSVVQVAKASGKMWSAKTDVDKQPYEQRAA 147

Query: 96  KRKSDYNKNMQDYNKQLADGVNAAEENESDKSKS-EVNDEDDEEGS 140
             ++ Y + +  Y  Q        +E+ +++ +  E  + D  +GS
Sbjct: 148 LLRAKYREELSVYRNQFNARKTCLQESATNQCREFEQAESDTTDGS 193



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 35  KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVER 93
           +D  KPK   S++  F+  +R +FKE  PN         +   EKW+S+S+ EKA +   
Sbjct: 4   RDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEAL 63

Query: 94  AEKRKSDYNKNMQDY 108
           A+  K+ Y + M +Y
Sbjct: 64  AKLDKARYQEEMMNY 78


>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
          Length = 210

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 38  NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKR 97
           N PKRPPSAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ ++A K 
Sbjct: 93  NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151

Query: 98  KSDYNKNMQDY 108
           K  Y K++  Y
Sbjct: 152 KEKYEKDIAAY 162



 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKAPFVERA 94
           DPNKP+   S++  F++  R++ K+ HP++  + A   K   E+WK+MS  EK+ F + A
Sbjct: 5   DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64

Query: 95  EKRKSDYNKNMQDY 108
           +  K+ Y++ M++Y
Sbjct: 65  KSDKARYDREMKNY 78


>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
           24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
           GN=nhp-6 PE=3 SV=1
          Length = 103

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 30  KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAP 89
           K +A KDPN PKR  SA+  F  E R+  +E +P   S   VGK  GE+WK++S+ ++AP
Sbjct: 16  KRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSDKQRAP 74

Query: 90  FVERAEKRKSDYNKNMQDYN 109
           +  +A   K  Y    Q YN
Sbjct: 75  YEAKAAADKKRYEDEKQAYN 94


>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
           ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
           SV=1
          Length = 101

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 32  KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFV 91
           +A KDPN PKR  SA+  F  E R+  +E +P   S   VGK  GE+WK+++E ++AP+ 
Sbjct: 16  RAKKDPNAPKRGLSAYMFFANEQRENVREENPG-ISFGQVGKLLGERWKALNEKQRAPYE 74

Query: 92  ERAEKRKSDYNKNMQDYN 109
            +A   K  Y    Q YN
Sbjct: 75  AKAAADKKRYEDEKQAYN 92


>sp|Q9USU7|YHHB_SCHPO HMG box-containing protein C28F2.11 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPBC28F2.11 PE=1 SV=1
          Length = 310

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 8/101 (7%)

Query: 34  AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFV 91
           A+DP +PKRPPSA+ +F +  R + KE+    KS  V  V KA  EKW S+SED++  + 
Sbjct: 111 ARDPAQPKRPPSAYNLFQKNQRSEIKESL-GEKSNDVKEVNKAMHEKWGSLSEDDRKTYE 169

Query: 92  ERAEKRKSDYNKNMQDY-----NKQLADGVNAAEENESDKS 127
           E A K +  Y + M  Y     N  +AD    AEE  +  S
Sbjct: 170 EEASKLREAYEEEMAAYNASKENASVADSRVTAEETSTKPS 210


>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
          Length = 709

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 36  DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAE 95
           DPN PKRP SA+ +++   R++ K  HP   S+  + K AGE WK MS+++K  +  +AE
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601

Query: 96  KRKSDYNKNMQDY 108
             + +Y K M++Y
Sbjct: 602 DARREYEKAMKEY 614


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.301    0.121    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,088,001
Number of Sequences: 539616
Number of extensions: 2351731
Number of successful extensions: 33108
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 940
Number of HSP's that attempted gapping in prelim test: 21342
Number of HSP's gapped (non-prelim): 7702
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 55 (25.8 bits)