Query 032085
Match_columns 147
No_of_seqs 204 out of 1076
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 3.2E-26 1.1E-30 158.2 12.7 87 30-117 8-94 (102)
2 2eqz_A High mobility group pro 99.9 7.9E-26 2.7E-30 151.6 11.8 80 29-109 5-86 (86)
3 1k99_A Upstream binding factor 99.9 6.8E-26 2.3E-30 155.9 8.6 83 31-114 2-84 (99)
4 1hme_A High mobility group pro 99.9 2.1E-25 7.2E-30 146.3 7.7 76 34-110 1-76 (77)
5 1cg7_A Protein (NON histone pr 99.9 6E-26 2E-30 154.4 4.8 83 29-112 10-92 (93)
6 2e6o_A HMG box-containing prot 99.9 3.3E-25 1.1E-29 148.9 8.3 77 32-109 10-86 (87)
7 1wgf_A Upstream binding factor 99.9 7E-26 2.4E-30 153.2 4.9 81 26-107 7-87 (90)
8 2crj_A SWI/SNF-related matrix- 99.9 1.2E-24 4.2E-29 147.5 10.7 80 34-114 2-81 (92)
9 2lhj_A High mobility group pro 99.9 7.2E-26 2.5E-30 155.0 3.9 83 29-112 12-96 (97)
10 2cs1_A PMS1 protein homolog 1; 99.9 1E-24 3.4E-29 148.0 9.4 80 35-115 3-82 (92)
11 3nm9_A HMG-D, high mobility gr 99.9 4.2E-24 1.4E-28 139.0 9.7 72 37-111 1-72 (73)
12 1hry_A Human SRY; DNA, DNA-bin 99.9 9.7E-25 3.3E-29 142.8 6.4 75 36-111 1-75 (76)
13 1aab_A High mobility group pro 99.9 8.9E-25 3E-29 145.4 4.8 78 34-112 2-81 (83)
14 1j46_A SRY, sex-determining re 99.9 1.1E-23 3.8E-28 140.8 8.5 77 36-113 1-77 (85)
15 1wxl_A Single-strand recogniti 99.9 1.1E-23 3.6E-28 137.1 7.8 72 37-111 1-72 (73)
16 1wz6_A HMG-box transcription f 99.9 5E-24 1.7E-28 141.4 5.2 77 35-112 3-79 (82)
17 1ckt_A High mobility group 1 p 99.9 2.1E-23 7.3E-28 134.6 7.9 69 39-108 1-71 (71)
18 2gzk_A Sex-determining region 99.9 6E-23 2.1E-27 151.3 11.2 79 31-110 80-158 (159)
19 4a3n_A Transcription factor SO 99.9 1.2E-23 4.1E-28 135.6 6.1 71 38-109 1-71 (71)
20 4euw_A Transcription factor SO 99.9 2.9E-23 1E-27 144.3 8.4 80 32-112 22-101 (106)
21 1gt0_D Transcription factor SO 99.9 2.6E-23 8.8E-28 137.3 7.6 74 38-112 1-74 (80)
22 3f27_D Transcription factor SO 99.9 2.2E-23 7.6E-28 138.4 7.3 76 36-112 3-78 (83)
23 2lef_A LEF-1 HMG, protein (lym 99.9 5.4E-23 1.8E-27 137.6 8.7 77 38-115 1-77 (86)
24 3u2b_C Transcription factor SO 99.9 3.3E-23 1.1E-27 136.3 6.7 74 38-112 1-74 (79)
25 1v64_A Nucleolar transcription 99.9 9.8E-23 3.3E-27 142.2 9.4 81 31-116 8-89 (108)
26 1i11_A Transcription factor SO 99.9 4.3E-23 1.5E-27 136.6 6.3 75 37-112 2-76 (81)
27 2yrq_A High mobility group pro 99.9 2.9E-22 9.9E-27 149.7 10.9 80 31-111 93-172 (173)
28 3fgh_A Transcription factor A, 99.9 2.5E-22 8.7E-27 128.4 6.5 67 38-109 1-67 (67)
29 2yrq_A High mobility group pro 99.9 8.6E-22 2.9E-26 147.1 10.4 85 29-113 5-90 (173)
30 1l8y_A Upstream binding factor 99.9 8.6E-22 2.9E-26 133.3 9.2 76 38-115 3-78 (91)
31 1v63_A Nucleolar transcription 99.9 1.6E-21 5.5E-26 134.5 10.1 79 36-117 5-83 (101)
32 2d7l_A WD repeat and HMG-box D 99.8 3.1E-21 1.1E-25 128.2 7.0 61 36-97 2-63 (81)
33 3tmm_A Transcription factor A, 99.8 6.7E-21 2.3E-25 149.2 8.2 82 33-115 35-116 (238)
34 3tq6_A Transcription factor A, 99.8 2.3E-20 7.8E-25 144.1 9.1 79 36-115 6-84 (214)
35 2yuk_A Myeloid/lymphoid or mix 99.8 2.4E-21 8.1E-26 131.0 0.3 69 31-104 14-84 (90)
36 2cto_A Novel protein; high mob 99.8 2.5E-20 8.7E-25 126.8 4.6 69 35-106 6-77 (93)
37 3tq6_A Transcription factor A, 99.8 8E-21 2.8E-25 146.6 1.1 81 31-116 106-186 (214)
38 3tmm_A Transcription factor A, 99.8 1.3E-20 4.6E-25 147.5 0.3 81 31-116 138-218 (238)
39 2gzk_A Sex-determining region 99.7 2.8E-18 9.7E-23 126.2 8.0 74 37-111 2-75 (159)
40 2qgu_A Probable signal peptide 79.9 2 6.8E-05 32.1 4.2 47 66-112 72-120 (211)
41 1ayz_A UBC2, ubiquitin-conjuga 37.8 12 0.00041 26.8 1.3 16 86-101 133-148 (169)
42 1j1d_B Troponin T, TNT; THIN f 36.7 82 0.0028 20.9 5.3 52 49-103 28-79 (106)
43 2lkw_A Membrane fusion protein 32.8 9.2 0.00032 18.7 0.0 11 38-48 9-19 (26)
44 3o39_A Periplasmic protein rel 32.2 69 0.0023 21.3 4.3 28 69-96 78-105 (108)
45 2yua_A Williams-beuren syndrom 29.7 1.1E+02 0.0036 19.4 4.9 37 52-88 36-76 (99)
46 3itf_A Periplasmic adaptor pro 28.6 91 0.0031 21.8 4.7 31 70-100 107-137 (145)
47 3mhp_C TIC62_peptide, ferredox 27.7 7.5 0.00026 19.4 -0.9 11 40-50 2-12 (26)
48 2o37_A Protein SIS1; HSP40, J- 22.5 1.2E+02 0.004 18.9 4.0 37 52-88 27-64 (92)
49 2iu1_A EIF5, eukaryotic transl 22.1 39 0.0013 25.1 1.7 7 105-111 120-126 (208)
50 3epy_A Acyl-COA-binding domain 21.7 96 0.0033 19.7 3.4 60 40-101 19-87 (89)
51 2wh5_A Acyl-COA-binding domain 21.7 84 0.0029 20.8 3.2 62 42-105 29-99 (106)
52 3ygs_P Procaspase 9; apoptosis 20.9 64 0.0022 20.6 2.5 17 39-55 63-79 (97)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=3.2e-26 Score=158.19 Aligned_cols=87 Identities=29% Similarity=0.574 Sum_probs=82.1
Q ss_pred CCccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032085 30 KPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (147)
Q Consensus 30 kkk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~ 109 (147)
++++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||.+|++|++++|++|.++|..++++|..+|+.|.
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 86 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYR 86 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhcccCcc
Q 032085 110 KQLADGVN 117 (147)
Q Consensus 110 ~k~~~~~~ 117 (147)
.++.....
T Consensus 87 ~~~~~~~~ 94 (102)
T 2co9_A 87 ASLVSKSY 94 (102)
T ss_dssp HHHTSSCC
T ss_pred hhcccccc
Confidence 99887544
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=7.9e-26 Score=151.59 Aligned_cols=80 Identities=36% Similarity=0.615 Sum_probs=75.2
Q ss_pred cCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHH
Q 032085 29 AKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQ 106 (147)
Q Consensus 29 ~kkk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~ 106 (147)
++++..+||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|+.|++++|++|.++|..++++|..+|.
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 83 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPE-VPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMK 83 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTT-SCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999999999999999999 64 799999999999999999999999999999999999999
Q ss_pred HHH
Q 032085 107 DYN 109 (147)
Q Consensus 107 ~y~ 109 (147)
.|+
T Consensus 84 ~Y~ 86 (86)
T 2eqz_A 84 DYG 86 (86)
T ss_dssp HHC
T ss_pred HcC
Confidence 994
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.93 E-value=6.8e-26 Score=155.87 Aligned_cols=83 Identities=25% Similarity=0.560 Sum_probs=79.5
Q ss_pred CccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032085 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (147)
Q Consensus 31 kk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~ 110 (147)
+++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++++|..+|..|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hccc
Q 032085 111 QLAD 114 (147)
Q Consensus 111 k~~~ 114 (147)
.++.
T Consensus 81 ~~P~ 84 (99)
T 1k99_A 81 DHPD 84 (99)
T ss_dssp CCCC
T ss_pred HCCC
Confidence 8764
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.92 E-value=2.1e-25 Score=146.30 Aligned_cols=76 Identities=45% Similarity=0.861 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032085 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (147)
Q Consensus 34 ~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~ 110 (147)
++||++||||+|||||||+++|..|+..||+ +++.+|+++||.+|+.||+++|++|.++|..++++|..+|+.|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999 999999999999999999999999999999999999999999975
No 5
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.92 E-value=6e-26 Score=154.37 Aligned_cols=83 Identities=36% Similarity=0.675 Sum_probs=78.7
Q ss_pred cCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHH
Q 032085 29 AKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108 (147)
Q Consensus 29 ~kkk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y 108 (147)
++++..+||++|+||+|||||||+++|..|+.+||+ +++.+|+++||.+|++||+++|++|.++|..++++|..+|+.|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 032085 109 NKQL 112 (147)
Q Consensus 109 ~~k~ 112 (147)
..+.
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 8764
No 6
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.92 E-value=3.3e-25 Score=148.91 Aligned_cols=77 Identities=26% Similarity=0.505 Sum_probs=74.3
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032085 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (147)
Q Consensus 32 k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~ 109 (147)
+..+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 467899999999999999999999999999999 99999999999999999999999999999999999999999886
No 7
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=7e-26 Score=153.17 Aligned_cols=81 Identities=28% Similarity=0.496 Sum_probs=74.5
Q ss_pred cCccCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHH
Q 032085 26 KRTAKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNM 105 (147)
Q Consensus 26 k~k~kkk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~ 105 (147)
.+++++++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..+|
T Consensus 7 ~k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 85 (90)
T 1wgf_A 7 GKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKS 85 (90)
T ss_dssp CSSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCC
T ss_pred CCCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778899999999999999999999999999999 9999999999999999999999999999999999998776
Q ss_pred HH
Q 032085 106 QD 107 (147)
Q Consensus 106 ~~ 107 (147)
..
T Consensus 86 ~~ 87 (90)
T 1wgf_A 86 GP 87 (90)
T ss_dssp SS
T ss_pred HH
Confidence 43
No 8
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.92 E-value=1.2e-24 Score=147.54 Aligned_cols=80 Identities=28% Similarity=0.554 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032085 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLA 113 (147)
Q Consensus 34 ~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~~ 113 (147)
.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++++|..+|+.|.....
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 80 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEA 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 4799999999999999999999999999999 999999999999999999999999999999999999999999997654
Q ss_pred c
Q 032085 114 D 114 (147)
Q Consensus 114 ~ 114 (147)
.
T Consensus 81 ~ 81 (92)
T 2crj_A 81 Y 81 (92)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.92 E-value=7.2e-26 Score=154.99 Aligned_cols=83 Identities=31% Similarity=0.643 Sum_probs=78.6
Q ss_pred cCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHH
Q 032085 29 AKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQ 106 (147)
Q Consensus 29 ~kkk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~ 106 (147)
++++..+||++|+||+|||||||+++|..|+.+||+ ++ +.+|+++||.+|+.||+++|++|.++|..++++|..+|+
T Consensus 12 ~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 90 (97)
T 2lhj_A 12 RPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKA 90 (97)
T ss_dssp CTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678999999999999999999999999999999 88 999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 032085 107 DYNKQL 112 (147)
Q Consensus 107 ~y~~k~ 112 (147)
.|..+.
T Consensus 91 ~y~~~~ 96 (97)
T 2lhj_A 91 EYAQRK 96 (97)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998763
No 10
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=147.96 Aligned_cols=80 Identities=30% Similarity=0.429 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 032085 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLAD 114 (147)
Q Consensus 35 ~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~~~ 114 (147)
.+|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..+|+.|..+++.
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 578999999999999999999999999999 9999999999999999999999999999999999999999999998765
Q ss_pred C
Q 032085 115 G 115 (147)
Q Consensus 115 ~ 115 (147)
.
T Consensus 82 ~ 82 (92)
T 2cs1_A 82 M 82 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.91 E-value=4.2e-24 Score=138.97 Aligned_cols=72 Identities=32% Similarity=0.690 Sum_probs=69.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 032085 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (147)
Q Consensus 37 p~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k 111 (147)
.++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++ |++|.++|..++++|..+|+.|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999 9999999999999999998 9999999999999999999999875
No 12
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.91 E-value=9.7e-25 Score=142.78 Aligned_cols=75 Identities=27% Similarity=0.503 Sum_probs=70.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 032085 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (147)
Q Consensus 36 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k 111 (147)
||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+|+.|+.+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 75 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 68999999999999999999999999999 9999999999999999999999999999999999999999999753
No 13
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.90 E-value=8.9e-25 Score=145.37 Aligned_cols=78 Identities=32% Similarity=0.604 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 032085 34 AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (147)
Q Consensus 34 ~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k 111 (147)
++||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||.+|+.||+++|++|.++|..++++|..+|+.|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTT-TCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999998 64 69999999999999999999999999999999999999999865
Q ss_pred c
Q 032085 112 L 112 (147)
Q Consensus 112 ~ 112 (147)
.
T Consensus 81 ~ 81 (83)
T 1aab_A 81 K 81 (83)
T ss_dssp S
T ss_pred C
Confidence 4
No 14
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.90 E-value=1.1e-23 Score=140.78 Aligned_cols=77 Identities=26% Similarity=0.477 Sum_probs=73.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032085 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLA 113 (147)
Q Consensus 36 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~~ 113 (147)
.|++|+||+|||||||+++|..|+.+||+ +++.+|+++||.+|++||+++|++|.++|..++++|..+|++|.....
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~pr 77 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPR 77 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCC
Confidence 37899999999999999999999999999 999999999999999999999999999999999999999999987543
No 15
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.90 E-value=1.1e-23 Score=137.05 Aligned_cols=72 Identities=29% Similarity=0.664 Sum_probs=69.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 032085 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (147)
Q Consensus 37 p~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k 111 (147)
|++||||+|||||||+++|..|+.+||+ +++.+|+++||.+|+.| ++|++|.++|..++++|..+|..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6899999999999999999999999999 99999999999999999 899999999999999999999999764
No 16
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.89 E-value=5e-24 Score=141.42 Aligned_cols=77 Identities=21% Similarity=0.408 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032085 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112 (147)
Q Consensus 35 ~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~ 112 (147)
.++++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+|+.|+.+.
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 578999999999999999999999999999 99999999999999999999999999999999999999999998653
No 17
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.89 E-value=2.1e-23 Score=134.59 Aligned_cols=69 Identities=33% Similarity=0.664 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHH
Q 032085 39 KPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY 108 (147)
Q Consensus 39 ~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y 108 (147)
+||||+|||||||+++|..|+..||+ ++ +.+|+++||++|++||+++|++|.++|..++++|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTT-CCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 64 69999999999999999999999999999999999999876
No 18
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.89 E-value=6e-23 Score=151.31 Aligned_cols=79 Identities=44% Similarity=0.837 Sum_probs=76.1
Q ss_pred CccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032085 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (147)
Q Consensus 31 kk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~ 110 (147)
++..+||++||||+|||||||+++|..|+.+||+ +++.+|+++||.+|++||+++|++|.++|..++++|..+|++|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999 999999999999999999999999999999999999999999985
No 19
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.89 E-value=1.2e-23 Score=135.59 Aligned_cols=71 Identities=31% Similarity=0.597 Sum_probs=63.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032085 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (147)
Q Consensus 38 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~ 109 (147)
++||||+|||||||+++|..|+..||+ +++.+|+++||++|+.||+++|++|.++|..++++|..+++.|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 479999999999999999999999999 99999999999999999999999999999999999999999885
No 20
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.89 E-value=2.9e-23 Score=144.31 Aligned_cols=80 Identities=33% Similarity=0.580 Sum_probs=71.0
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 032085 32 KAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (147)
Q Consensus 32 k~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k 111 (147)
...++++.||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..+|+.|+.+
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 346778999999999999999999999999999 9999999999999999999999999999999999999999999875
Q ss_pred c
Q 032085 112 L 112 (147)
Q Consensus 112 ~ 112 (147)
.
T Consensus 101 P 101 (106)
T 4euw_A 101 P 101 (106)
T ss_dssp -
T ss_pred C
Confidence 4
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.89 E-value=2.6e-23 Score=137.29 Aligned_cols=74 Identities=30% Similarity=0.565 Sum_probs=71.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032085 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112 (147)
Q Consensus 38 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~ 112 (147)
++|+||+|||||||+++|..|+..||+ +++.+|+++||.+|+.||+++|++|.++|..++++|..+|+.|+..-
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 479999999999999999999999999 99999999999999999999999999999999999999999998654
No 22
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.89 E-value=2.2e-23 Score=138.40 Aligned_cols=76 Identities=29% Similarity=0.539 Sum_probs=69.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032085 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112 (147)
Q Consensus 36 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~ 112 (147)
.+++||||+|||||||+++|..|+..||+ +++.+|+++||++|+.|++++|++|.++|..++++|..+|+.|+.+-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 78 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRP 78 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 35789999999999999999999999999 99999999999999999999999999999999999999999998653
No 23
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=5.4e-23 Score=137.65 Aligned_cols=77 Identities=23% Similarity=0.416 Sum_probs=72.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 032085 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115 (147)
Q Consensus 38 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~~~~ 115 (147)
++|+||+|||||||+++|..|+.+||+ +++.+|+++||.+|++||+++|++|.++|..++++|..+|+.|...-..+
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~ 77 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG 77 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC
Confidence 479999999999999999999999999 99999999999999999999999999999999999999999998765433
No 24
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=3.3e-23 Score=136.26 Aligned_cols=74 Identities=28% Similarity=0.545 Sum_probs=71.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032085 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112 (147)
Q Consensus 38 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~ 112 (147)
++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++++|..++++|+..-
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~P 74 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRP 74 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 579999999999999999999999999 99999999999999999999999999999999999999999998653
No 25
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=9.8e-23 Score=142.19 Aligned_cols=81 Identities=20% Similarity=0.441 Sum_probs=74.9
Q ss_pred CccCCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032085 31 PKAAKDPNKP-KRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (147)
Q Consensus 31 kk~~~dp~~P-KrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~ 109 (147)
.++.+|++.| |||+|||||||+++|..|+ + +++.+|+++||++|+.|++++|++|.++|..++++|..+|..|.
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556799999 9999999999999999887 4 89999999999999999999999999999999999999999999
Q ss_pred hhcccCc
Q 032085 110 KQLADGV 116 (147)
Q Consensus 110 ~k~~~~~ 116 (147)
.++.+..
T Consensus 83 ~~~~~~~ 89 (108)
T 1v64_A 83 ESLPEEE 89 (108)
T ss_dssp HHSCHHH
T ss_pred hhCCHHH
Confidence 9886543
No 26
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=4.3e-23 Score=136.62 Aligned_cols=75 Identities=27% Similarity=0.507 Sum_probs=68.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032085 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112 (147)
Q Consensus 37 p~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~ 112 (147)
+++||||+|||||||+++|..|+..||+ +++.+|+++||.+|++||+++|++|.++|..++++|..++++|+.+-
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p 76 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKP 76 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC----
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeecc
Confidence 4789999999999999999999999999 99999999999999999999999999999999999999999998753
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=149.68 Aligned_cols=80 Identities=44% Similarity=0.833 Sum_probs=76.4
Q ss_pred CccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032085 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (147)
Q Consensus 31 kk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~ 110 (147)
++..+||++||||+|||||||+++|..|+.+||+ +++.+|+++||.+|++||+++|++|.++|..++++|..+|+.|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456799999999999999999999999999999 999999999999999999999999999999999999999999987
Q ss_pred h
Q 032085 111 Q 111 (147)
Q Consensus 111 k 111 (147)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 4
No 28
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.86 E-value=2.5e-22 Score=128.40 Aligned_cols=67 Identities=31% Similarity=0.598 Sum_probs=62.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032085 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN 109 (147)
Q Consensus 38 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~ 109 (147)
+.||||+|||+|||+++|..|+..|| .+|+++||++|+.||+++|.+|.++|..++++|..+|..|.
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 67 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWA 67 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57999999999999999999976554 69999999999999999999999999999999999999983
No 29
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.6e-22 Score=147.10 Aligned_cols=85 Identities=28% Similarity=0.548 Sum_probs=78.6
Q ss_pred cCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHH
Q 032085 29 AKPKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNN-KSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQD 107 (147)
Q Consensus 29 ~kkk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~-~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~ 107 (147)
+.++..+||++||||+|||||||+++|..|+..||+. +++.+|+++||.+|+.||+++|++|.++|..++++|..+|..
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345678999999999999999999999999999984 489999999999999999999999999999999999999999
Q ss_pred HHhhcc
Q 032085 108 YNKQLA 113 (147)
Q Consensus 108 y~~k~~ 113 (147)
|....+
T Consensus 85 y~~~~~ 90 (173)
T 2yrq_A 85 YIPPKG 90 (173)
T ss_dssp CCCCCC
T ss_pred hhhhhh
Confidence 987654
No 30
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.86 E-value=8.6e-22 Score=133.30 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=72.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 032085 38 NKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115 (147)
Q Consensus 38 ~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~~~~ 115 (147)
+.|+||+|||+||++++|..++..||+ ++.+|++.||++|++|++++|++|+++|..++++|..+|..|..+....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~~ 78 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAAT 78 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 689999999999999999999999997 7999999999999999999999999999999999999999999887653
No 31
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=1.6e-21 Score=134.48 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=70.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 032085 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115 (147)
Q Consensus 36 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~~~~ 115 (147)
...+||||+|||||||++++. ...+++ +++.+|+++||++|+.|++++|++|.++|..++++|..+|+.|...+++.
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNH-LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 457999999999999999964 224455 78999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 032085 116 VN 117 (147)
Q Consensus 116 ~~ 117 (147)
..
T Consensus 82 ~~ 83 (101)
T 1v63_A 82 DR 83 (101)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=128.20 Aligned_cols=61 Identities=21% Similarity=0.393 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCChHhhHHHHHHHHHH
Q 032085 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS-VATVGKAAGEKWKSMSEDEKAPFVERAEKR 97 (147)
Q Consensus 36 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~-~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~ 97 (147)
+++.||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|+.|++++|++|.++|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999 87 999999999999999999999999999886
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.83 E-value=6.7e-21 Score=149.21 Aligned_cols=82 Identities=17% Similarity=0.409 Sum_probs=78.3
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032085 33 AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQL 112 (147)
Q Consensus 33 ~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~ 112 (147)
...+|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|.+|.++|..++++|..+|..|...+
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999 99999999999999999999999999999999999999999999888
Q ss_pred ccC
Q 032085 113 ADG 115 (147)
Q Consensus 113 ~~~ 115 (147)
++.
T Consensus 114 ~p~ 116 (238)
T 3tmm_A 114 TPS 116 (238)
T ss_dssp CHH
T ss_pred CHH
Confidence 753
No 34
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=144.12 Aligned_cols=79 Identities=18% Similarity=0.422 Sum_probs=75.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 032085 36 DPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADG 115 (147)
Q Consensus 36 dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k~~~~ 115 (147)
.|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|.+|.++|..++++|..+|..|...+++.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~ 84 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPS 84 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHH
Confidence 46899999999999999999999999999 99999999999999999999999999999999999999999999888653
No 35
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-21 Score=131.04 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=63.7
Q ss_pred CccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHH
Q 032085 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKS--VATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKN 104 (147)
Q Consensus 31 kk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~ 104 (147)
.+..+||+.||||+|||||||+++|..|+.+||+ ++ +.+|+ ++|+.|++++|++|+++|+.++++|...
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3456799999999999999999999999999999 88 88887 9999999999999999999999999753
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-20 Score=126.76 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHhcCCChHhhHHHHHHHHHHHHHHHHHHH
Q 032085 35 KDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAA---GEKWKSMSEDEKAPFVERAEKRKSDYNKNMQ 106 (147)
Q Consensus 35 ~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l---~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~ 106 (147)
.++++||||+|||||||+++|..|+.+ + +++.+|+++| |++|+.|++++|++|+++|..++++|..++.
T Consensus 6 ~~~~~PKRP~sAf~lF~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 6 SGMPNRKASRNAYYFFVQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCSSCCHHHHHHHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999988 5 8899999999 9999999999999999999999999998763
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.79 E-value=8e-21 Score=146.65 Aligned_cols=81 Identities=27% Similarity=0.450 Sum_probs=73.0
Q ss_pred CccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032085 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (147)
Q Consensus 31 kk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~ 110 (147)
++..+||+.||||+|||||||+++|..|+..| +.+|+++||++|++|++++|++|..+|..++++|..+|+.|..
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSS-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999886544 4599999999999999999999999999999999999999999
Q ss_pred hcccCc
Q 032085 111 QLADGV 116 (147)
Q Consensus 111 k~~~~~ 116 (147)
++....
T Consensus 181 ~~~~~~ 186 (214)
T 3tq6_A 181 QMIEVG 186 (214)
T ss_dssp HHHHTT
T ss_pred hCcccc
Confidence 986543
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.78 E-value=1.3e-20 Score=147.50 Aligned_cols=81 Identities=28% Similarity=0.489 Sum_probs=73.1
Q ss_pred CccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 032085 31 PKAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNK 110 (147)
Q Consensus 31 kk~~~dp~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~ 110 (147)
++..+||+.||||+|||||||+++|..|+..|| .+|+++||++|++|++++|++|..+|..++++|..+|+.|..
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999998875544 599999999999999999999999999999999999999999
Q ss_pred hcccCc
Q 032085 111 QLADGV 116 (147)
Q Consensus 111 k~~~~~ 116 (147)
++....
T Consensus 213 k~~~~~ 218 (238)
T 3tmm_A 213 QMIEVG 218 (238)
T ss_dssp HHHHTT
T ss_pred hCcccc
Confidence 985533
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.75 E-value=2.8e-18 Score=126.18 Aligned_cols=74 Identities=27% Similarity=0.523 Sum_probs=71.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 032085 37 PNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQ 111 (147)
Q Consensus 37 p~~PKrP~say~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~~~~~y~~k 111 (147)
+++|+||+||||||+++.|..|..+||+ +++.+|+++||.+|+.||+++|.+|.++|..++++|..+|+.|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 5799999999999999999999999999 9999999999999999999999999999999999999999999764
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=79.93 E-value=2 Score=32.14 Aligned_cols=47 Identities=9% Similarity=0.218 Sum_probs=37.8
Q ss_pred CCHHHHHHH-HHHHhcCCChHhhHHHHHHHHH-HHHHHHHHHHHHHhhc
Q 032085 66 KSVATVGKA-AGEKWKSMSEDEKAPFVERAEK-RKSDYNKNMQDYNKQL 112 (147)
Q Consensus 66 ~~~~ei~k~-l~~~Wk~ls~~eK~~Y~~~A~~-~k~~y~~~~~~y~~k~ 112 (147)
..+..+++. ||..|+.+|+++++.|.+.... ...-|-..+..|..+.
T Consensus 72 ~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q~ 120 (211)
T 2qgu_A 72 ADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQT 120 (211)
T ss_dssp BCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred cCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 467777664 6899999999999999998777 5567888888887543
No 41
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=37.76 E-value=12 Score=26.85 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 032085 86 EKAPFVERAEKRKSDY 101 (147)
Q Consensus 86 eK~~Y~~~A~~~k~~y 101 (147)
.+..|...+..--.+|
T Consensus 133 d~~~y~~~~r~~~~~~ 148 (169)
T 1ayz_A 133 HKSQYVKRVKETVEKS 148 (169)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3445555554443333
No 42
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=36.70 E-value=82 Score=20.94 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHHHHHHHHHHHHHHHH
Q 032085 49 VFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNK 103 (147)
Q Consensus 49 lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~y~~ 103 (147)
.|+.++++.+ ..++ ++..++..+|-++|..+..-+=..|.-.+...+..|..
T Consensus 28 kiLaER~kpL--~id~-l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI 79 (106)
T 1j1d_B 28 KILAERRKVL--AIDH-LNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEI 79 (106)
T ss_dssp HHHHHHHHHH--HHTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC--CCCC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHH
Confidence 4667777655 3344 78899999999999998888888898888888777754
No 43
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=32.81 E-value=9.2 Score=18.67 Aligned_cols=11 Identities=45% Similarity=0.969 Sum_probs=8.3
Q ss_pred CCCCCCCCHHH
Q 032085 38 NKPKRPPSAFF 48 (147)
Q Consensus 38 ~~PKrP~say~ 48 (147)
.+|-+|+|||.
T Consensus 9 qppapppnafv 19 (26)
T 2lkw_A 9 QPPAPPPNAFV 19 (26)
T ss_pred cCCCcCCCeeE
Confidence 46778899875
No 44
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=32.19 E-value=69 Score=21.26 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCChHhhHHHHHHHHH
Q 032085 69 ATVGKAAGEKWKSMSEDEKAPFVERAEK 96 (147)
Q Consensus 69 ~ei~k~l~~~Wk~ls~~eK~~Y~~~A~~ 96 (147)
.+.++.-..+++-|++++|..|....++
T Consensus 78 v~~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 78 LAHMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3445667789999999999999886543
No 45
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.75 E-value=1.1e+02 Score=19.40 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCChHhhH
Q 032085 52 EEFRKQFKEAHPNNKS----VATVGKAAGEKWKSMSEDEKA 88 (147)
Q Consensus 52 ~e~r~~~k~~~p~~~~----~~ei~k~l~~~Wk~ls~~eK~ 88 (147)
+..|..++.-||+... ..+..+.|...|..|++..+.
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R 76 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 4456667788898321 367888999999999876553
No 46
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=28.64 E-value=91 Score=21.75 Aligned_cols=31 Identities=13% Similarity=0.359 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCChHhhHHHHHHHHHHHHH
Q 032085 70 TVGKAAGEKWKSMSEDEKAPFVERAEKRKSD 100 (147)
Q Consensus 70 ei~k~l~~~Wk~ls~~eK~~Y~~~A~~~k~~ 100 (147)
+.++.-.+++.-|++++|..|.+...+-..+
T Consensus 107 ~r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~ 137 (145)
T 3itf_A 107 EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQ 137 (145)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 3355566889999999999999866555443
No 47
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=27.70 E-value=7.5 Score=19.44 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=7.8
Q ss_pred CCCCCCHHHHH
Q 032085 40 PKRPPSAFFVF 50 (147)
Q Consensus 40 PKrP~say~lF 50 (147)
..||+++|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 45788888765
No 48
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=22.53 E-value=1.2e+02 Score=18.89 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCChHhhH
Q 032085 52 EEFRKQFKEAHPNNK-SVATVGKAAGEKWKSMSEDEKA 88 (147)
Q Consensus 52 ~e~r~~~k~~~p~~~-~~~ei~k~l~~~Wk~ls~~eK~ 88 (147)
+..|..++.-||+.. ...+..+.|.+.|..|++..+.
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R 64 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKR 64 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHH
Confidence 445566778899832 3457788899999988866543
No 49
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=22.06 E-value=39 Score=25.14 Aligned_cols=7 Identities=0% Similarity=0.420 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 032085 105 MQDYNKQ 111 (147)
Q Consensus 105 ~~~y~~k 111 (147)
+-.|...
T Consensus 120 Il~W~~~ 126 (208)
T 2iu1_A 120 IISWSEK 126 (208)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 3444443
No 50
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=21.73 E-value=96 Score=19.71 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=31.2
Q ss_pred CCCCCCH-----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC---C-hHhhHHHHHHHHHHHHHH
Q 032085 40 PKRPPSA-----FFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSM---S-EDEKAPFVERAEKRKSDY 101 (147)
Q Consensus 40 PKrP~sa-----y~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~l---s-~~eK~~Y~~~A~~~k~~y 101 (147)
|.+|.+. |-||-|.....+....|+.+.+....+- ..|+.| | ++-++.|+++..+....|
T Consensus 19 ~~~p~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw--~AW~~l~g~s~eeA~~~Yi~~v~~l~~ky 87 (89)
T 3epy_A 19 KARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKW--EAWNLKKGLSTEDATSAYISKAKELIEKY 87 (89)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTCSCCSCCTTTTCHHHHHHH--HHHHTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHhhCCCCCCCCcccchHHHHHH--HHHHHhhCCCHHHHHHHHHHHHHHHhhhh
Confidence 3456654 4444444432222233553445444432 458654 4 445778888777776555
No 51
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=21.71 E-value=84 Score=20.76 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=32.7
Q ss_pred CCCCH-----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC---C-hHhhHHHHHHHHHHHHHHHHHH
Q 032085 42 RPPSA-----FFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSM---S-EDEKAPFVERAEKRKSDYNKNM 105 (147)
Q Consensus 42 rP~sa-----y~lF~~e~r~~~k~~~p~~~~~~ei~k~l~~~Wk~l---s-~~eK~~Y~~~A~~~k~~y~~~~ 105 (147)
+|.+. |-||-|.....+....|+.+.+..-.+ -..|+.| | ++-++.|.++.......+..-|
T Consensus 29 ~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aK--w~AW~~l~gms~eeA~~~YI~~v~~l~~k~~~t~ 99 (106)
T 2wh5_A 29 RPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYK--WDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTV 99 (106)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHH--HHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHH--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhccC
Confidence 55555 455555443333333455445554444 3458664 4 4447777777777665554433
No 52
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.87 E-value=64 Score=20.60 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHH
Q 032085 39 KPKRPPSAFFVFMEEFR 55 (147)
Q Consensus 39 ~PKrP~say~lF~~e~r 55 (147)
-|+|.+.||..||..-+
T Consensus 63 L~~rG~~Af~~F~~aL~ 79 (97)
T 3ygs_P 63 LETRGSQALPLFISCLE 79 (97)
T ss_dssp HTTSCTTHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHH
Confidence 46788999999998765
Done!