Query 032088
Match_columns 147
No_of_seqs 104 out of 779
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tjz_C Coatomer subunit zeta-1 100.0 6.4E-42 2.2E-46 249.9 18.0 137 1-144 12-151 (153)
2 1w63_Q Adapter-related protein 100.0 1.6E-39 5.5E-44 238.3 17.5 137 1-142 1-138 (158)
3 2vgl_S AP-2 complex subunit si 100.0 2.7E-38 9.1E-43 227.9 19.5 135 1-141 1-137 (142)
4 2vgl_M AP-2 complex subunit MU 100.0 3E-33 1E-37 232.9 16.9 137 1-143 1-137 (435)
5 1w63_M Adaptor-related protein 100.0 5.4E-33 1.9E-37 230.6 9.3 138 1-143 2-139 (423)
6 2nut_C Vesicle-trafficking pro 96.6 0.079 2.7E-06 38.9 13.3 98 1-100 2-102 (196)
7 3bw6_A Synaptobrevin homolog Y 95.1 0.22 7.6E-06 34.8 9.5 95 2-100 7-111 (144)
8 3cpt_A Mitogen-activated prote 94.2 0.99 3.4E-05 31.7 13.6 93 2-97 38-136 (143)
9 4b93_A Vesicle-associated memb 93.5 0.62 2.1E-05 33.9 9.1 83 11-100 11-93 (189)
10 2vx8_A Nucleoporin-like protei 92.7 2 6.8E-05 30.8 10.8 83 11-100 53-135 (169)
11 2j3t_C Trafficking protein par 92.4 1.9 6.6E-05 30.0 10.2 95 1-98 2-109 (145)
12 3kyq_A YKT6, synaptobrevin hom 91.5 2.6 8.9E-05 31.0 10.3 94 2-99 4-107 (199)
13 4afi_A AP-3 complex subunit de 91.0 2.6 9E-05 30.3 9.7 83 11-100 63-145 (173)
14 3cue_C Transport protein parti 84.6 8.6 0.00029 27.1 9.6 95 1-98 2-115 (159)
15 3cue_A Transport protein parti 77.5 20 0.00068 26.8 11.6 22 1-22 2-23 (219)
16 2j3w_A Sedlin, trafficking pro 62.3 34 0.0012 23.3 12.2 97 2-99 6-113 (142)
17 2fh5_A Signal recognition part 46.4 25 0.00086 25.5 4.2 93 1-99 10-104 (185)
18 1nrj_A Signal recognition part 37.9 1E+02 0.0035 21.6 6.8 39 1-40 1-40 (158)
19 1nkl_A NK-lysin; saposin fold, 34.2 62 0.0021 19.4 4.1 34 85-118 5-38 (78)
20 1vet_B P14, late endosomal/lys 33.0 1.1E+02 0.0037 20.3 13.8 96 2-97 19-118 (125)
21 3or5_A Thiol:disulfide interch 25.7 1.1E+02 0.0037 19.8 4.6 34 4-40 119-152 (165)
22 2hgc_A YJCQ protein; SR346, st 20.1 1.3E+02 0.0044 19.5 3.8 32 99-130 18-49 (102)
23 4ddj_A Saposin-A, protein A; s 20.1 1.1E+02 0.0038 18.2 3.4 31 85-115 7-37 (83)
No 1
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=6.4e-42 Score=249.86 Aligned_cols=137 Identities=19% Similarity=0.318 Sum_probs=119.5
Q ss_pred CceEEEEEeCCCCEEEEecCCC---CHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCC
Q 032088 1 MILAVLFANSEGNILVERFNGV---PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE 77 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~ 77 (147)
||+|++|+|++|++|++|||++ +.++|+.+++.+.+.+. |. + +|+..+++++++||+++||||+++++.+
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~---r~--~--~~i~~~~~~~~vy~~~~~Lyfv~~~~~~ 84 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH---RT--D--SEIALLEGLTVVYKSSIDLYFYVIGSSY 84 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS---SC--C--CCEEEETTEEEEEEECSSCEEEEEEETT
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CC--C--CCEEEECCEEEEEEEECCEEEEEEEcCC
Confidence 8999999999999999999997 44567777765555442 22 2 4799999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCCC
Q 032088 78 YDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPP 144 (147)
Q Consensus 78 eNel~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~~ 144 (147)
+||++++++||+++++|++||++++||+++++||+++|++||||+|+|+|+|||++.|++|+.++..
T Consensus 85 eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~~ 151 (153)
T 3tjz_C 85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGE 151 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC-----
T ss_pred CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcccC
Confidence 9999999999999999999996689999999999999999999999999999999999999988753
No 2
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.6e-39 Score=238.26 Aligned_cols=137 Identities=16% Similarity=0.221 Sum_probs=120.8
Q ss_pred CceEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCC
Q 032088 1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD 79 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eN 79 (147)
||+|++|+|++|+++++|||++ +..+|+.+++...++..+ + ++..+|++.+++++++|+++++|||+++++.++|
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~--~--~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~N 76 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLA--R--KPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDN 76 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHT--S--CSSSCSEEEETTEEEEEEEETTEEEEEEECSSSC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhc--c--CCCCCCeEEECCEEEEEEEECCEEEEEEecCCCC
Confidence 9999999999999999999998 444455555444444422 2 2235789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcC
Q 032088 80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK 142 (147)
Q Consensus 80 el~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~ 142 (147)
|++++++||.++++|++||| ++||.++++||+++|++||||+|+|+|++||++.|++++.++
T Consensus 77 el~~le~L~~~vevl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~ 138 (158)
T 1w63_Q 77 ELITLELIHRYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQA 138 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-cCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcc
Confidence 99999999999999999997 599999999999999999999999999999999999999764
No 3
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=2.7e-38 Score=227.91 Aligned_cols=135 Identities=13% Similarity=0.198 Sum_probs=117.6
Q ss_pred CceEEEEEeCCCCEEEEecCCC-CHHHH-HHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCC
Q 032088 1 MILAVLFANSEGNILVERFNGV-PAEER-LHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEY 78 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~e 78 (147)
||+|++|+|++|+++++|||++ +...+ +..+.+...+.. + ++..+|++.+++++++|+++++|||+++++.++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~---~--~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~ 75 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTV---R--DAKHTNFVEFRNFKIIYRRYAGLYFCICVDVND 75 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHT---C--CTTSCSEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhc---C--CCCCCCEEEECCEEEEEEEECCEEEEEEeCCCC
Confidence 9999999999999999999996 43333 444555555542 2 223578999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhc
Q 032088 79 DELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRL 141 (147)
Q Consensus 79 Nel~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~ 141 (147)
||++++++||.++++|++||| ++||+++++||+++|++||||+|+|+|++|++..|++++..
T Consensus 76 N~l~~le~L~~~ve~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~ 137 (142)
T 2vgl_S 76 NNLAYLEAIHNFVEVLNEYFH-NVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLM 137 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHh
Confidence 999999999999999999997 69999999999999999999999999999998888888743
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=3e-33 Score=232.86 Aligned_cols=137 Identities=17% Similarity=0.200 Sum_probs=122.7
Q ss_pred CceEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCH
Q 032088 1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE 80 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe 80 (147)
||+|++|+|++|+++++|||++... |...+.|...+..+. ....++++.+++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~----~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 75 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIG-RNAVDAFRVNVIHAR----QQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA 75 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCC-HHHHHHHHHHTTTCS----SCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCC-hhHHHHHHHHHhccc----cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 9999999999999999999997333 556777877766321 12456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCC
Q 032088 81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP 143 (147)
Q Consensus 81 l~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~ 143 (147)
|+++|+||.++++|++||+ ++||++|++||+++|++||||+|+|+|++||++.|++++.+++
T Consensus 76 l~~le~L~~~v~vl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~ 137 (435)
T 2vgl_M 76 AMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQG 137 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccc
Confidence 9999999999999999998 6999999999999999999999999999999999998887665
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.98 E-value=5.4e-33 Score=230.62 Aligned_cols=138 Identities=13% Similarity=0.133 Sum_probs=122.0
Q ss_pred CceEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCH
Q 032088 1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE 80 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe 80 (147)
||+|++|+|++|+++++|||++... +...+.|...+.++. .....++++.+++++++|+++++|||+++++.++||
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~---~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 77 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVD-MSEVEHFMPILMEKE---EEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACV 77 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCT-TTTHHHHHHHHHHHH---HTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred ceEEEEEECCCCCEEEEEecCCCCC-hHHHHHHHHHHhhcc---ccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 8999999999999999999997322 345677777766322 112356799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCC
Q 032088 81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP 143 (147)
Q Consensus 81 l~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~ 143 (147)
|+++|+||.++++|++||| ++||++|++||+++|++||||+|+|+|++||++.|++++.+++
T Consensus 78 l~~le~L~~~v~~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~ 139 (423)
T 1w63_M 78 SLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEG 139 (423)
T ss_dssp HHHHHHHHHHHHHHHHHSS-CCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHh-hcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCC
Confidence 9999999999999999996 6999999999999999999999999999999999999997765
No 6
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=96.65 E-value=0.079 Score=38.91 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=67.7
Q ss_pred CceEEEEEeCCCCEEEEecCCCC-H--HHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCC
Q 032088 1 MILAVLFANSEGNILVERFNGVP-A--EERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE 77 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~ 77 (147)
||...+|.-.....+|+.+++.+ . .++..+..+...++++. ....+.. ..+..+++.+.|..-++++++++++.+
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki-~~~~~~r-~s~~~~~y~fhy~~~~gl~~l~i~d~~ 79 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKL-NEQSPTR-CTLEAGAMTFHYIIEQGVCYLVLCEAA 79 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHC-CTTSCSE-EEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhc-CCCCCCe-EEEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence 77777776654456666677642 1 23445555556666432 2112222 245678999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhHhcC
Q 032088 78 YDELALAEVIFAITSAVKDACGK 100 (147)
Q Consensus 78 eNel~l~e~l~~~~e~L~~~~~~ 100 (147)
...-..+.+|..+.+-+..-++.
T Consensus 80 yp~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 80 FPKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHhccc
Confidence 99999999999988887776653
No 7
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=95.15 E-value=0.22 Score=34.82 Aligned_cols=95 Identities=12% Similarity=0.026 Sum_probs=64.4
Q ss_pred ceEEEEEeCCC--CEEEEecCCCC---HHHHHHHHHH---H-HHHhcccCCCCCCccceEEEecCEEEEEE-EeCcEEEE
Q 032088 2 ILAVLFANSEG--NILVERFNGVP---AEERLHWRSF---L-VKLGADNLKGVKNEELLVASHKSVYIVYT-VLGDVSIF 71 (147)
Q Consensus 2 I~~ili~n~~G--~~~l~k~Y~~~---~~~~~~~~~~---~-~~i~~~~~~~~~~~~~~i~~~~~~~ivy~-~~~dl~~~ 71 (147)
|.++.|+-..+ -++|+..++-+ .-+|.....| . +++.++. ++..+ ..+.++++.+-|. +.+++.++
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~---~~~~R-~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRT---GAGQR-QSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHC---CTTEE-EEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhC---CCCce-EEEEeCCEEEEEEEecCCEEEE
Confidence 55676665443 57888888752 2234333333 2 3344332 12222 2456789999888 77999999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHhHhcC
Q 032088 72 VVGKDEYDELALAEVIFAITSAVKDACGK 100 (147)
Q Consensus 72 ~v~~~~eNel~l~e~l~~~~e~L~~~~~~ 100 (147)
++++.+...-..+.+|+.+.+-+..-++.
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~ 111 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPK 111 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999888888776653
No 8
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=94.16 E-value=0.99 Score=31.74 Aligned_cols=93 Identities=8% Similarity=0.064 Sum_probs=64.2
Q ss_pred ceEEEEEeCCCCEEEEecCCC-CH-HHHHH----HHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEc
Q 032088 2 ILAVLFANSEGNILVERFNGV-PA-EERLH----WRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK 75 (147)
Q Consensus 2 I~~ili~n~~G~~~l~k~Y~~-~~-~~~~~----~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~ 75 (147)
+.+|+|.|++|-+++.-..+. +. .-|.. +-..-.|..|-.+ .....-|..++++.+|.-...-+++.++++
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLgl---GknksII~~Y~~yqvVq~n~~Plvit~Ias 114 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGL---SKNKSIICYYNTYQVVQFNRLPLVVSFIAS 114 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTC---CCEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCC---CCCceEEEEecCeEEEEEecCCEEEEEEec
Confidence 689999999999999888875 21 11211 2222223321111 122334678999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhH
Q 032088 76 DEYDELALAEVIFAITSAVKDA 97 (147)
Q Consensus 76 ~~eNel~l~e~l~~~~e~L~~~ 97 (147)
++.|-=+++.+=+.+...|..+
T Consensus 115 ~~aNtG~Il~Le~~L~p~l~~L 136 (143)
T 3cpt_A 115 SSANTGLIVSLEKELAPLFEEL 136 (143)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHhhhHHHHHHHHHHH
Confidence 9999998888766666666553
No 9
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=93.46 E-value=0.62 Score=33.94 Aligned_cols=83 Identities=10% Similarity=0.193 Sum_probs=58.1
Q ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCHHHHHHHHHHH
Q 032088 11 EGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAI 90 (147)
Q Consensus 11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~l~~~ 90 (147)
+|.++|+.|=..+.. +.....+++++- . +..+-....++++.+-|..-++++++++++.+...-..+.+|..+
T Consensus 11 rg~~iLae~t~~~gn----f~~ia~~iL~ki-p--~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i 83 (189)
T 4b93_A 11 RGTTILAKHAWCGGN----FLEVTEQILAKI-P--SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 83 (189)
T ss_dssp ETTEEEEEEESSEEC----HHHHHHHHHTTC-C--SSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred eCCEEEEeCCCCCCC----HHHHHHHHHHhC-C--CCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHH
Confidence 589999997443211 111223344322 1 112223557899999999999999999999999999999999998
Q ss_pred HHHHHhHhcC
Q 032088 91 TSAVKDACGK 100 (147)
Q Consensus 91 ~e~L~~~~~~ 100 (147)
.+-+..-++.
T Consensus 84 ~~eF~~~~~~ 93 (189)
T 4b93_A 84 KKRFQTTYGS 93 (189)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHhhccc
Confidence 8888776653
No 10
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=92.70 E-value=2 Score=30.83 Aligned_cols=83 Identities=11% Similarity=0.221 Sum_probs=58.9
Q ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCHHHHHHHHHHH
Q 032088 11 EGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAI 90 (147)
Q Consensus 11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~l~~~ 90 (147)
+|.++|+.|-..+.. +....++++++. .. .+.+ ..+..+++.+-|..-+++.++++++.+..--..+.+|..+
T Consensus 53 RG~~VLae~t~~~gn----f~~iak~ll~kl-~~-~~~r-~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI 125 (169)
T 2vx8_A 53 RGTTILAKHAWCGGN----FLEVTEQILAKI-PS-ENNK-LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 125 (169)
T ss_dssp ETTEEEEEEESSCBS----HHHHHHHHHTTS-CS-SCEE-EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred cCCEEEEEeccCCCC----HHHHHHHHHhhC-CC-CCCc-eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHH
Confidence 367888887543221 222334455433 11 1112 2456899999999999999999999999999999999999
Q ss_pred HHHHHhHhcC
Q 032088 91 TSAVKDACGK 100 (147)
Q Consensus 91 ~e~L~~~~~~ 100 (147)
.+-+..-++.
T Consensus 126 ~~eF~~~y~~ 135 (169)
T 2vx8_A 126 KKRFQTTYGS 135 (169)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhh
Confidence 9998887764
No 11
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=92.40 E-value=1.9 Score=30.00 Aligned_cols=95 Identities=9% Similarity=0.048 Sum_probs=56.6
Q ss_pred CceEEEEEeCCCCEEEEecCCCC-------HHHHHHHHHHHH---HHhcccCCCCCC-ccceEEEecCEEE-EEEEeCcE
Q 032088 1 MILAVLFANSEGNILVERFNGVP-------AEERLHWRSFLV---KLGADNLKGVKN-EELLVASHKSVYI-VYTVLGDV 68 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~~-------~~~~~~~~~~~~---~i~~~~~~~~~~-~~~~i~~~~~~~i-vy~~~~dl 68 (147)
||.++.|+|++|..++.|-|.++ .++.+..-.-+. .+.++- ...+. ..-..+..+++++ .|..-.++
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~kl-sp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKM-SPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHH-CSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHh-CCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 58899999999999999999652 222222211111 122111 11111 1112334566544 45556789
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHH-HHHHhHh
Q 032088 69 SIFVVGKDEYDELALAEVIFAIT-SAVKDAC 98 (147)
Q Consensus 69 ~~~~v~~~~eNel~l~e~l~~~~-e~L~~~~ 98 (147)
-|+++++.++++ +-++++.++ ++.-++.
T Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~v 109 (145)
T 2j3t_C 81 KVVMNTDLGVGP--IRDVLHHIYSALYVEFV 109 (145)
T ss_dssp EEEEEECTTCCC--CHHHHHHHHHTTHHHHT
T ss_pred EEEEEecCCcch--HHHHHHHHHHHHHHHHH
Confidence 999999987665 567888888 6776643
No 12
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=91.50 E-value=2.6 Score=30.97 Aligned_cols=94 Identities=10% Similarity=0.111 Sum_probs=64.0
Q ss_pred ceEEEEEeCCCC--EEEEecCCC---CHHHHHH---HHHHHH-HHhcccCCCCCCccceEEEecCEEEE-EEEeCcEEEE
Q 032088 2 ILAVLFANSEGN--ILVERFNGV---PAEERLH---WRSFLV-KLGADNLKGVKNEELLVASHKSVYIV-YTVLGDVSIF 71 (147)
Q Consensus 2 I~~ili~n~~G~--~~l~k~Y~~---~~~~~~~---~~~~~~-~i~~~~~~~~~~~~~~i~~~~~~~iv-y~~~~dl~~~ 71 (147)
|.++.|+...|. ++++.-|+- +.=+|.. +-.|.. .+.++. +++.. ..+..+++.+- |.+-++++++
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~---~~~~r-~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERS---AKGSR-ASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTS---CTTEE-EEEECSSEEEEEEECTTSEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcC---CCCCe-EEEEeCCEEEEEEEecCCEEEE
Confidence 567888876554 356777764 2223433 333443 354332 22222 24567888888 8999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHhHhc
Q 032088 72 VVGKDEYDELALAEVIFAITSAVKDACG 99 (147)
Q Consensus 72 ~v~~~~eNel~l~e~l~~~~e~L~~~~~ 99 (147)
++++.+...-..+.+|..+.+-+..-++
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988888877665
No 13
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=90.98 E-value=2.6 Score=30.31 Aligned_cols=83 Identities=10% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCHHHHHHHHHHH
Q 032088 11 EGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAI 90 (147)
Q Consensus 11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~l~~~ 90 (147)
+|.++|+.|=..+..- .....+++++. . ...+-.....+++.+-|..-+++.++++++.+..--..+.+|..+
T Consensus 63 rg~tiLAE~t~~~gnf----~~va~~iL~ki-p--~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI 135 (173)
T 4afi_A 63 RGTTILAKHAWCGGNF----LEVTEQILAKI-P--SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 135 (173)
T ss_dssp ETTEEEEEEESSCCCH----HHHHHHHHTTS-C--SSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCCCH----HHHHHHHHHhC-C--CCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHH
Confidence 4889999886542111 11223344322 1 111223556899999999999999999999999999999999999
Q ss_pred HHHHHhHhcC
Q 032088 91 TSAVKDACGK 100 (147)
Q Consensus 91 ~e~L~~~~~~ 100 (147)
.+-+..-++.
T Consensus 136 ~~eF~~~yg~ 145 (173)
T 4afi_A 136 KKRFQTTYGS 145 (173)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHhch
Confidence 8888877763
No 14
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=84.56 E-value=8.6 Score=27.12 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=51.3
Q ss_pred CceEEEEEeCCCCEEEEecCCCC-------------HHHHHHHHHHH---HHHhcccCCCCCC-ccceEEEecCEEE-EE
Q 032088 1 MILAVLFANSEGNILVERFNGVP-------------AEERLHWRSFL---VKLGADNLKGVKN-EELLVASHKSVYI-VY 62 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~~-------------~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~i~~~~~~~i-vy 62 (147)
||.++.|+|++|+.++.|-|.+. .++.+..-..+ ..+.++ +..... +.-..+..+.+++ .|
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~k-ls~~~~~~~f~~~~T~~ykl~~~ 80 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQK-LSKGSVKNDIRSISTGKYRVHTY 80 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHH-SCCSSSCCCEEEEECSSCBEEEE
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHH-hCCCCCCCCeEEEeeCCEEEEEE
Confidence 48999999999999999988531 11111111111 112211 111111 1111222344444 34
Q ss_pred EEeCcEEEEEEEcCCCCHHHHHHHHHHHHH-HHHhHh
Q 032088 63 TVLGDVSIFVVGKDEYDELALAEVIFAITS-AVKDAC 98 (147)
Q Consensus 63 ~~~~dl~~~~v~~~~eNel~l~e~l~~~~e-~L~~~~ 98 (147)
..-.++-|+++++..++++ -++++.+++ +.-+|.
T Consensus 81 eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~yv 115 (159)
T 3cue_C 81 CTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKYV 115 (159)
T ss_dssp CCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHHH
T ss_pred EeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHHH
Confidence 4456899999999876644 467777776 666643
No 15
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=77.51 E-value=20 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.3
Q ss_pred CceEEEEEeCCCCEEEEecCCC
Q 032088 1 MILAVLFANSEGNILVERFNGV 22 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~ 22 (147)
+|..++|+|+.|..++.|-|.+
T Consensus 2 ~i~sl~IiNk~GglIY~r~~~~ 23 (219)
T 3cue_A 2 AIETILVINKSGGLIYQRNFTN 23 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECSS
T ss_pred eeEEEEEEeCCCCEEeehhhcc
Confidence 5899999999999999999974
No 16
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=62.27 E-value=34 Score=23.28 Aligned_cols=97 Identities=10% Similarity=0.061 Sum_probs=56.6
Q ss_pred ceEEEEEeCCCCEEEEecCCCCH----HHHHHHHH-H-HHH---HhcccCCCCCCcc-ceEEEecCEE-EEEEEeCcEEE
Q 032088 2 ILAVLFANSEGNILVERFNGVPA----EERLHWRS-F-LVK---LGADNLKGVKNEE-LLVASHKSVY-IVYTVLGDVSI 70 (147)
Q Consensus 2 I~~ili~n~~G~~~l~k~Y~~~~----~~~~~~~~-~-~~~---i~~~~~~~~~~~~-~~i~~~~~~~-ivy~~~~dl~~ 70 (147)
|.++.|+|++|++++.|-|.+.. .+...... + ++. ++.+....+++.. ..+..+++++ ..|..-.++-|
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kf 85 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF 85 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEE
Confidence 68999999999999999997621 11111111 1 111 2211101111111 1122234433 44555678989
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHhHhc
Q 032088 71 FVVGKDEYDELALAEVIFAITSAVKDACG 99 (147)
Q Consensus 71 ~~v~~~~eNel~l~e~l~~~~e~L~~~~~ 99 (147)
+++++.. ++-.+-++++.+.++.-++.-
T Consensus 86 vl~~d~~-~~~~i~~~~~~iy~~Y~~~v~ 113 (142)
T 2j3w_A 86 IMLHDVR-QEDGIKNFFTDVYDLYIKFAM 113 (142)
T ss_dssp EEEESSC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCC-CcHHHHHHHHHHHHHHHHHhc
Confidence 9998763 577788999999988877765
No 17
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=46.39 E-value=25 Score=25.50 Aligned_cols=93 Identities=10% Similarity=0.006 Sum_probs=50.1
Q ss_pred CceEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcE--EEEEEEcCCC
Q 032088 1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDV--SIFVVGKDEY 78 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl--~~~~v~~~~e 78 (147)
|+..+.|+++.|=++-+.--.. ......+.+.+..++=.. |+ ..+...++++.+-|+..+++ .|++|-..--
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~~-~~~~~~IN~LIr~VlLEE-R~----~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL 83 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGVS-DSCTGPVNALIRSVLLQE-RG----GNNSFTHEALTLKYKLDNQFELVFVVGFQKIL 83 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTTT-BSCCCHHHHHHHHTGGGC------------CCCCCEEEEEEETTTTEEEEEEESCGG
T ss_pred ceeEEEEEeCCeEEEEeecCCc-ccccchHHHHHHHhhhcc-cc----CCCceeEcCeEEEEEEeccCCEEEEEEEcccc
Confidence 7788999999999998831111 111123344444433111 21 12346689999999998865 4444444434
Q ss_pred CHHHHHHHHHHHHHHHHhHhc
Q 032088 79 DELALAEVIFAITSAVKDACG 99 (147)
Q Consensus 79 Nel~l~e~l~~~~e~L~~~~~ 99 (147)
+-.-+-++|..+...+.+.++
T Consensus 84 ~L~YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 84 TLTYVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp GHHHHHHHHHHHHHHHHHHTH
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555443
No 18
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=37.90 E-value=1e+02 Score=21.56 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=25.2
Q ss_pred CceEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHHhcc
Q 032088 1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGAD 40 (147)
Q Consensus 1 MI~~ili~n~~G~~~l~k~Y~~-~~~~~~~~~~~~~~i~~~ 40 (147)
||.-++|+..+|++++.----+ ...++ .+-+|+..++.+
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~-qiN~fIS~Lits 40 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEI-QINSFISQLITS 40 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHH-HHHHHHHHHHHS
T ss_pred CcceEEEeccCceEEEEecccCcchHHH-HHHHHHHHHhcC
Confidence 8999999999999998432112 22222 445666666644
No 19
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=34.18 E-value=62 Score=19.43 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHH
Q 032088 85 EVIFAITSAVKDACGKIPTERLFLDKYGKICLCL 118 (147)
Q Consensus 85 e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lL 118 (147)
++...++..++++.+++.++..|..-+++++..|
T Consensus 5 ~~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C~~l 38 (78)
T 1nkl_A 5 ESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKL 38 (78)
T ss_dssp HHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhC
Confidence 4567788888888887888888888887777654
No 20
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=32.99 E-value=1.1e+02 Score=20.31 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=60.5
Q ss_pred ceEEEEEeCCCCEEEEecCCCCHHHH-HHHHHHHHHHhccc---CCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCC
Q 032088 2 ILAVLFANSEGNILVERFNGVPAEER-LHWRSFLVKLGADN---LKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE 77 (147)
Q Consensus 2 I~~ili~n~~G~~~l~k~Y~~~~~~~-~~~~~~~~~i~~~~---~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~ 77 (147)
+.+.++++++|-++.+.-......++ ...-.-.....++. .-...+-+..+++.++-++.-...++.++.++++++
T Consensus 19 v~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~ 98 (125)
T 1vet_B 19 VQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKET 98 (125)
T ss_dssp EEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCC
Confidence 56789999999999987775533333 22222222222211 011122334466777655555666999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhH
Q 032088 78 YDELALAEVIFAITSAVKDA 97 (147)
Q Consensus 78 eNel~l~e~l~~~~e~L~~~ 97 (147)
.|-=.+.-=++.+++-|..-
T Consensus 99 a~lGlv~~~m~~lv~~L~~~ 118 (125)
T 1vet_B 99 VGFGMLKAKAQALVQYLEEP 118 (125)
T ss_dssp SCHHHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHHHHHhhh
Confidence 99888877788887666543
No 21
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=25.72 E-value=1.1e+02 Score=19.82 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=20.3
Q ss_pred EEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcc
Q 032088 4 AVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGAD 40 (147)
Q Consensus 4 ~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~ 40 (147)
.++++|++|+++ .++..... ...+++++.++.++
T Consensus 119 ~~~lid~~G~i~-~~~~g~~~--~~~l~~~l~~~l~~ 152 (165)
T 3or5_A 119 TSFVIDASGNVS-GVIVGPRS--KADFDRIVKMALGA 152 (165)
T ss_dssp EEEEECTTSBEE-EEECSCCC--HHHHHHHHHHHHC-
T ss_pred eEEEECCCCcEE-EEEcCCCC--HHHHHHHHHHHHhh
Confidence 578999999986 44444311 22456666666643
No 22
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=20.09 E-value=1.3e+02 Score=19.54 Aligned_cols=32 Identities=6% Similarity=-0.082 Sum_probs=26.1
Q ss_pred cCCCCHHHHHhcHHHHHHHHHHHhhCCEEeee
Q 032088 99 GKIPTERLFLDKYGKICLCLDEIVWKGLLENT 130 (147)
Q Consensus 99 ~~~v~e~~i~~n~~~v~~lLDEiid~G~i~et 130 (147)
+.+++...+-=+-.....+++.|.+.|+|.-.
T Consensus 18 ~~~is~e~l~Ise~~~~~il~~L~d~GyI~Gv 49 (102)
T 2hgc_A 18 NTPLSENDIGVTEDQFDDAVNFLKREGYIIGV 49 (102)
T ss_dssp CSCCCHHHHTSCHHHHHHHHHHHHHHTSEECC
T ss_pred CCcCCHHhcCCCHHHHHHHHHHHHHCCCccce
Confidence 33688888877888899999999999998643
No 23
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=20.08 E-value=1.1e+02 Score=18.21 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhHhcCCCCHHHHHhcHHHHH
Q 032088 85 EVIFAITSAVKDACGKIPTERLFLDKYGKIC 115 (147)
Q Consensus 85 e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~ 115 (147)
++...++..+..+++.+.++..|..-+++++
T Consensus 7 ~~C~~~v~~~~~~l~~n~t~~~I~~~l~~~C 37 (83)
T 4ddj_A 7 DICKDVVTAAGDMLKDNATEEEILVYLEKTC 37 (83)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 3444555555555555555555554444443
Done!